Multiple sequence alignment - TraesCS6A01G205900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G205900 chr6A 100.000 2429 0 0 1 2429 360193722 360196150 0.000000e+00 4486.0
1 TraesCS6A01G205900 chr6A 84.529 446 50 7 848 1277 87298831 87298389 8.030000e-115 424.0
2 TraesCS6A01G205900 chr6A 91.729 266 20 2 124 387 376699787 376699522 3.820000e-98 368.0
3 TraesCS6A01G205900 chr6A 96.774 124 4 0 1 124 571155212 571155335 8.800000e-50 207.0
4 TraesCS6A01G205900 chr6A 96.748 123 4 0 2 124 184527370 184527248 3.170000e-49 206.0
5 TraesCS6A01G205900 chr2D 95.088 1140 55 1 1291 2429 407454075 407455214 0.000000e+00 1794.0
6 TraesCS6A01G205900 chr2D 92.720 989 58 7 308 1296 622710987 622711961 0.000000e+00 1415.0
7 TraesCS6A01G205900 chr2D 93.556 419 18 2 886 1296 407453494 407453911 1.230000e-172 616.0
8 TraesCS6A01G205900 chr2D 94.536 366 18 1 335 698 407438635 407439000 4.530000e-157 564.0
9 TraesCS6A01G205900 chr2D 93.382 136 9 0 1291 1426 622712125 622712260 4.100000e-48 202.0
10 TraesCS6A01G205900 chr2D 93.600 125 8 0 765 889 407439742 407439866 1.150000e-43 187.0
11 TraesCS6A01G205900 chr2D 100.000 37 0 0 780 816 106627779 106627743 4.330000e-08 69.4
12 TraesCS6A01G205900 chr4D 95.154 1135 52 2 1296 2429 328701246 328700114 0.000000e+00 1788.0
13 TraesCS6A01G205900 chr4D 94.490 363 20 0 886 1248 328704140 328703778 5.860000e-156 560.0
14 TraesCS6A01G205900 chr4D 90.647 417 31 6 335 747 46140184 46139772 4.570000e-152 547.0
15 TraesCS6A01G205900 chr4D 88.010 417 43 5 335 747 45005730 45005317 1.010000e-133 486.0
16 TraesCS6A01G205900 chr4D 95.133 226 9 2 124 347 328719738 328719513 2.970000e-94 355.0
17 TraesCS6A01G205900 chr4D 96.800 125 4 0 765 889 328718072 328717948 2.450000e-50 209.0
18 TraesCS6A01G205900 chr4D 96.748 123 4 0 2 124 287521436 287521558 3.170000e-49 206.0
19 TraesCS6A01G205900 chr4D 100.000 37 0 0 780 816 46139697 46139661 4.330000e-08 69.4
20 TraesCS6A01G205900 chr3A 94.401 1143 54 4 1291 2425 697840851 697841991 0.000000e+00 1748.0
21 TraesCS6A01G205900 chr3A 93.865 1141 68 2 1291 2429 152000319 151999179 0.000000e+00 1718.0
22 TraesCS6A01G205900 chr3A 92.586 580 32 5 124 692 697838996 697839575 0.000000e+00 822.0
23 TraesCS6A01G205900 chr3A 95.923 466 19 0 1962 2427 11774632 11774167 0.000000e+00 756.0
24 TraesCS6A01G205900 chr3A 95.335 343 16 0 954 1296 152000825 152000483 1.640000e-151 545.0
25 TraesCS6A01G205900 chr3A 95.045 222 9 2 124 343 744948533 744948754 4.970000e-92 348.0
26 TraesCS6A01G205900 chr3A 95.676 185 8 0 765 949 697840446 697840630 5.080000e-77 298.0
27 TraesCS6A01G205900 chr3A 96.748 123 3 1 2 124 198448608 198448729 1.140000e-48 204.0
28 TraesCS6A01G205900 chr4A 93.070 1140 78 1 1291 2429 407815448 407816587 0.000000e+00 1666.0
29 TraesCS6A01G205900 chr4A 91.615 966 74 4 335 1296 407814322 407815284 0.000000e+00 1328.0
30 TraesCS6A01G205900 chr4A 90.637 267 20 4 125 386 690206309 690206575 1.380000e-92 350.0
31 TraesCS6A01G205900 chr4A 92.366 131 8 1 1291 1421 657666177 657666049 4.120000e-43 185.0
32 TraesCS6A01G205900 chr1A 94.275 1083 59 3 1349 2429 16474745 16473664 0.000000e+00 1653.0
33 TraesCS6A01G205900 chr1A 94.872 39 2 0 778 816 570975032 570974994 7.250000e-06 62.1
34 TraesCS6A01G205900 chr7B 92.514 1082 79 2 1349 2429 346799476 346800556 0.000000e+00 1548.0
35 TraesCS6A01G205900 chr7B 95.513 468 21 0 1962 2429 62055738 62056205 0.000000e+00 749.0
36 TraesCS6A01G205900 chr7B 95.111 225 9 2 125 347 26705566 26705790 1.070000e-93 353.0
37 TraesCS6A01G205900 chr2B 89.978 928 68 2 350 1277 795407810 795408712 0.000000e+00 1175.0
38 TraesCS6A01G205900 chr2B 92.432 555 38 4 1421 1972 795317409 795316856 0.000000e+00 789.0
39 TraesCS6A01G205900 chr2B 90.000 450 32 11 125 568 311737556 311737998 9.740000e-159 569.0
40 TraesCS6A01G205900 chr2B 94.690 226 10 2 124 347 710351198 710351423 1.380000e-92 350.0
41 TraesCS6A01G205900 chr2A 89.282 933 74 3 346 1277 762023366 762024273 0.000000e+00 1146.0
42 TraesCS6A01G205900 chr2A 92.793 555 36 4 1421 1972 762079974 762080527 0.000000e+00 800.0
43 TraesCS6A01G205900 chr6B 90.440 795 73 3 335 1127 310606688 310605895 0.000000e+00 1044.0
44 TraesCS6A01G205900 chr6B 92.405 553 41 1 1421 1972 310605584 310605032 0.000000e+00 787.0
45 TraesCS6A01G205900 chr7D 91.065 526 34 2 780 1296 475101232 475100711 0.000000e+00 699.0
46 TraesCS6A01G205900 chr6D 87.580 467 38 7 848 1296 69198059 69197595 7.690000e-145 523.0
47 TraesCS6A01G205900 chr6D 95.968 124 5 0 1 124 445382404 445382527 4.100000e-48 202.0
48 TraesCS6A01G205900 chr3B 95.111 225 9 2 125 347 40890526 40890750 1.070000e-93 353.0
49 TraesCS6A01G205900 chr5A 97.561 123 3 0 2 124 527991693 527991815 6.800000e-51 211.0
50 TraesCS6A01G205900 chr5A 96.748 123 4 0 2 124 484465917 484465795 3.170000e-49 206.0
51 TraesCS6A01G205900 chr5A 96.748 123 4 0 2 124 499649324 499649446 3.170000e-49 206.0
52 TraesCS6A01G205900 chr7A 96.748 123 4 0 2 124 222559639 222559761 3.170000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G205900 chr6A 360193722 360196150 2428 False 4486.0 4486 100.0000 1 2429 1 chr6A.!!$F1 2428
1 TraesCS6A01G205900 chr2D 407453494 407455214 1720 False 1205.0 1794 94.3220 886 2429 2 chr2D.!!$F2 1543
2 TraesCS6A01G205900 chr2D 622710987 622712260 1273 False 808.5 1415 93.0510 308 1426 2 chr2D.!!$F3 1118
3 TraesCS6A01G205900 chr2D 407438635 407439866 1231 False 375.5 564 94.0680 335 889 2 chr2D.!!$F1 554
4 TraesCS6A01G205900 chr4D 328700114 328704140 4026 True 1174.0 1788 94.8220 886 2429 2 chr4D.!!$R3 1543
5 TraesCS6A01G205900 chr4D 46139661 46140184 523 True 308.2 547 95.3235 335 816 2 chr4D.!!$R2 481
6 TraesCS6A01G205900 chr4D 328717948 328719738 1790 True 282.0 355 95.9665 124 889 2 chr4D.!!$R4 765
7 TraesCS6A01G205900 chr3A 151999179 152000825 1646 True 1131.5 1718 94.6000 954 2429 2 chr3A.!!$R2 1475
8 TraesCS6A01G205900 chr3A 697838996 697841991 2995 False 956.0 1748 94.2210 124 2425 3 chr3A.!!$F3 2301
9 TraesCS6A01G205900 chr4A 407814322 407816587 2265 False 1497.0 1666 92.3425 335 2429 2 chr4A.!!$F2 2094
10 TraesCS6A01G205900 chr1A 16473664 16474745 1081 True 1653.0 1653 94.2750 1349 2429 1 chr1A.!!$R1 1080
11 TraesCS6A01G205900 chr7B 346799476 346800556 1080 False 1548.0 1548 92.5140 1349 2429 1 chr7B.!!$F3 1080
12 TraesCS6A01G205900 chr2B 795407810 795408712 902 False 1175.0 1175 89.9780 350 1277 1 chr2B.!!$F3 927
13 TraesCS6A01G205900 chr2B 795316856 795317409 553 True 789.0 789 92.4320 1421 1972 1 chr2B.!!$R1 551
14 TraesCS6A01G205900 chr2A 762023366 762024273 907 False 1146.0 1146 89.2820 346 1277 1 chr2A.!!$F1 931
15 TraesCS6A01G205900 chr2A 762079974 762080527 553 False 800.0 800 92.7930 1421 1972 1 chr2A.!!$F2 551
16 TraesCS6A01G205900 chr6B 310605032 310606688 1656 True 915.5 1044 91.4225 335 1972 2 chr6B.!!$R1 1637
17 TraesCS6A01G205900 chr7D 475100711 475101232 521 True 699.0 699 91.0650 780 1296 1 chr7D.!!$R1 516


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.114364 GGGCAAGGGAAAGAAAGGGA 59.886 55.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 6267 1.426251 ATGGACACCTCCTGCACCAA 61.426 55.0 0.0 0.0 37.48 3.67 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.386867 AATTGCCAAGCTCTTCATGATG 57.613 40.909 0.00 0.00 0.00 3.07
22 23 1.100510 TGCCAAGCTCTTCATGATGC 58.899 50.000 0.00 1.83 0.00 3.91
23 24 1.340697 TGCCAAGCTCTTCATGATGCT 60.341 47.619 11.13 11.13 37.37 3.79
24 25 1.065701 GCCAAGCTCTTCATGATGCTG 59.934 52.381 15.80 11.14 35.79 4.41
25 26 2.640184 CCAAGCTCTTCATGATGCTGA 58.360 47.619 15.80 4.30 35.79 4.26
26 27 3.014623 CCAAGCTCTTCATGATGCTGAA 58.985 45.455 15.80 0.00 35.79 3.02
27 28 3.442625 CCAAGCTCTTCATGATGCTGAAA 59.557 43.478 15.80 0.00 34.86 2.69
28 29 4.098044 CCAAGCTCTTCATGATGCTGAAAT 59.902 41.667 15.80 2.05 34.86 2.17
29 30 5.274718 CAAGCTCTTCATGATGCTGAAATC 58.725 41.667 15.80 0.00 34.86 2.17
30 31 3.560481 AGCTCTTCATGATGCTGAAATCG 59.440 43.478 14.77 0.00 34.86 3.34
31 32 3.558829 GCTCTTCATGATGCTGAAATCGA 59.441 43.478 0.00 0.00 34.86 3.59
32 33 4.552378 GCTCTTCATGATGCTGAAATCGAC 60.552 45.833 0.00 0.00 34.86 4.20
33 34 3.553105 TCTTCATGATGCTGAAATCGACG 59.447 43.478 0.00 0.00 34.86 5.12
34 35 3.163630 TCATGATGCTGAAATCGACGA 57.836 42.857 0.00 0.00 0.00 4.20
35 36 3.520569 TCATGATGCTGAAATCGACGAA 58.479 40.909 0.00 0.00 0.00 3.85
36 37 3.553105 TCATGATGCTGAAATCGACGAAG 59.447 43.478 0.00 0.00 0.00 3.79
37 38 2.270923 TGATGCTGAAATCGACGAAGG 58.729 47.619 0.00 0.00 0.00 3.46
38 39 2.271800 GATGCTGAAATCGACGAAGGT 58.728 47.619 0.00 0.00 0.00 3.50
39 40 3.119280 TGATGCTGAAATCGACGAAGGTA 60.119 43.478 0.00 0.00 0.00 3.08
40 41 2.876091 TGCTGAAATCGACGAAGGTAG 58.124 47.619 0.00 0.00 0.00 3.18
41 42 2.490509 TGCTGAAATCGACGAAGGTAGA 59.509 45.455 0.00 0.00 32.19 2.59
42 43 3.057104 TGCTGAAATCGACGAAGGTAGAA 60.057 43.478 0.00 0.00 31.39 2.10
43 44 3.924686 GCTGAAATCGACGAAGGTAGAAA 59.075 43.478 0.00 0.00 31.39 2.52
44 45 4.567159 GCTGAAATCGACGAAGGTAGAAAT 59.433 41.667 0.00 0.00 31.39 2.17
45 46 5.276442 GCTGAAATCGACGAAGGTAGAAATC 60.276 44.000 0.00 0.00 31.39 2.17
46 47 5.716094 TGAAATCGACGAAGGTAGAAATCA 58.284 37.500 0.00 0.00 31.39 2.57
47 48 6.160684 TGAAATCGACGAAGGTAGAAATCAA 58.839 36.000 0.00 0.00 31.39 2.57
48 49 6.310467 TGAAATCGACGAAGGTAGAAATCAAG 59.690 38.462 0.00 0.00 31.39 3.02
49 50 5.578005 ATCGACGAAGGTAGAAATCAAGA 57.422 39.130 0.00 0.00 31.39 3.02
50 51 5.381174 TCGACGAAGGTAGAAATCAAGAA 57.619 39.130 0.00 0.00 0.00 2.52
51 52 5.775686 TCGACGAAGGTAGAAATCAAGAAA 58.224 37.500 0.00 0.00 0.00 2.52
52 53 6.218019 TCGACGAAGGTAGAAATCAAGAAAA 58.782 36.000 0.00 0.00 0.00 2.29
53 54 6.365247 TCGACGAAGGTAGAAATCAAGAAAAG 59.635 38.462 0.00 0.00 0.00 2.27
54 55 6.145696 CGACGAAGGTAGAAATCAAGAAAAGT 59.854 38.462 0.00 0.00 0.00 2.66
55 56 7.327761 CGACGAAGGTAGAAATCAAGAAAAGTA 59.672 37.037 0.00 0.00 0.00 2.24
56 57 8.535690 ACGAAGGTAGAAATCAAGAAAAGTAG 57.464 34.615 0.00 0.00 0.00 2.57
57 58 7.117956 ACGAAGGTAGAAATCAAGAAAAGTAGC 59.882 37.037 0.00 0.00 0.00 3.58
58 59 7.117812 CGAAGGTAGAAATCAAGAAAAGTAGCA 59.882 37.037 0.00 0.00 0.00 3.49
59 60 8.691661 AAGGTAGAAATCAAGAAAAGTAGCAA 57.308 30.769 0.00 0.00 0.00 3.91
60 61 8.329203 AGGTAGAAATCAAGAAAAGTAGCAAG 57.671 34.615 0.00 0.00 0.00 4.01
61 62 7.939588 AGGTAGAAATCAAGAAAAGTAGCAAGT 59.060 33.333 0.00 0.00 0.00 3.16
62 63 8.017946 GGTAGAAATCAAGAAAAGTAGCAAGTG 58.982 37.037 0.00 0.00 0.00 3.16
63 64 7.573968 AGAAATCAAGAAAAGTAGCAAGTGT 57.426 32.000 0.00 0.00 0.00 3.55
64 65 8.000780 AGAAATCAAGAAAAGTAGCAAGTGTT 57.999 30.769 0.00 0.00 0.00 3.32
65 66 7.917505 AGAAATCAAGAAAAGTAGCAAGTGTTG 59.082 33.333 0.00 0.00 0.00 3.33
66 67 6.942532 ATCAAGAAAAGTAGCAAGTGTTGA 57.057 33.333 0.00 0.00 0.00 3.18
67 68 6.942532 TCAAGAAAAGTAGCAAGTGTTGAT 57.057 33.333 0.00 0.00 0.00 2.57
68 69 6.728200 TCAAGAAAAGTAGCAAGTGTTGATG 58.272 36.000 0.00 0.00 0.00 3.07
69 70 5.695851 AGAAAAGTAGCAAGTGTTGATGG 57.304 39.130 0.00 0.00 0.00 3.51
70 71 5.133221 AGAAAAGTAGCAAGTGTTGATGGT 58.867 37.500 0.00 0.00 0.00 3.55
71 72 5.594317 AGAAAAGTAGCAAGTGTTGATGGTT 59.406 36.000 0.00 0.00 0.00 3.67
72 73 4.836125 AAGTAGCAAGTGTTGATGGTTG 57.164 40.909 0.00 0.00 0.00 3.77
73 74 4.085357 AGTAGCAAGTGTTGATGGTTGA 57.915 40.909 0.00 0.00 0.00 3.18
74 75 3.815401 AGTAGCAAGTGTTGATGGTTGAC 59.185 43.478 0.00 0.00 0.00 3.18
75 76 2.653726 AGCAAGTGTTGATGGTTGACA 58.346 42.857 0.00 0.00 0.00 3.58
76 77 3.023119 AGCAAGTGTTGATGGTTGACAA 58.977 40.909 0.00 0.00 0.00 3.18
77 78 3.067180 AGCAAGTGTTGATGGTTGACAAG 59.933 43.478 0.00 0.00 0.00 3.16
78 79 3.066621 GCAAGTGTTGATGGTTGACAAGA 59.933 43.478 0.00 0.00 0.00 3.02
79 80 4.601019 CAAGTGTTGATGGTTGACAAGAC 58.399 43.478 0.00 0.00 39.46 3.01
80 81 3.214328 AGTGTTGATGGTTGACAAGACC 58.786 45.455 0.00 0.00 39.82 3.85
88 89 4.497291 TGGTTGACAAGACCACTAGTTT 57.503 40.909 0.00 0.00 42.06 2.66
89 90 4.448210 TGGTTGACAAGACCACTAGTTTC 58.552 43.478 0.00 0.00 42.06 2.78
90 91 4.080807 TGGTTGACAAGACCACTAGTTTCA 60.081 41.667 0.00 0.00 42.06 2.69
91 92 4.879545 GGTTGACAAGACCACTAGTTTCAA 59.120 41.667 0.00 0.00 37.14 2.69
92 93 5.007724 GGTTGACAAGACCACTAGTTTCAAG 59.992 44.000 0.00 0.00 37.14 3.02
93 94 5.353394 TGACAAGACCACTAGTTTCAAGT 57.647 39.130 0.00 0.00 0.00 3.16
94 95 6.474140 TGACAAGACCACTAGTTTCAAGTA 57.526 37.500 0.00 0.00 0.00 2.24
95 96 6.880484 TGACAAGACCACTAGTTTCAAGTAA 58.120 36.000 0.00 0.00 0.00 2.24
96 97 7.332557 TGACAAGACCACTAGTTTCAAGTAAA 58.667 34.615 0.00 0.00 0.00 2.01
97 98 7.825270 TGACAAGACCACTAGTTTCAAGTAAAA 59.175 33.333 0.00 0.00 0.00 1.52
98 99 8.209917 ACAAGACCACTAGTTTCAAGTAAAAG 57.790 34.615 0.00 0.00 0.00 2.27
99 100 7.282450 ACAAGACCACTAGTTTCAAGTAAAAGG 59.718 37.037 0.00 0.00 0.00 3.11
100 101 6.296803 AGACCACTAGTTTCAAGTAAAAGGG 58.703 40.000 0.00 0.00 0.00 3.95
101 102 4.825634 ACCACTAGTTTCAAGTAAAAGGGC 59.174 41.667 0.00 0.00 0.00 5.19
102 103 4.825085 CCACTAGTTTCAAGTAAAAGGGCA 59.175 41.667 0.00 0.00 0.00 5.36
103 104 5.300792 CCACTAGTTTCAAGTAAAAGGGCAA 59.699 40.000 0.00 0.00 0.00 4.52
104 105 6.438763 CACTAGTTTCAAGTAAAAGGGCAAG 58.561 40.000 0.00 0.00 0.00 4.01
105 106 4.937201 AGTTTCAAGTAAAAGGGCAAGG 57.063 40.909 0.00 0.00 0.00 3.61
106 107 3.641436 AGTTTCAAGTAAAAGGGCAAGGG 59.359 43.478 0.00 0.00 0.00 3.95
107 108 3.603965 TTCAAGTAAAAGGGCAAGGGA 57.396 42.857 0.00 0.00 0.00 4.20
108 109 3.603965 TCAAGTAAAAGGGCAAGGGAA 57.396 42.857 0.00 0.00 0.00 3.97
109 110 3.917300 TCAAGTAAAAGGGCAAGGGAAA 58.083 40.909 0.00 0.00 0.00 3.13
110 111 3.895041 TCAAGTAAAAGGGCAAGGGAAAG 59.105 43.478 0.00 0.00 0.00 2.62
111 112 3.895041 CAAGTAAAAGGGCAAGGGAAAGA 59.105 43.478 0.00 0.00 0.00 2.52
112 113 4.193240 AGTAAAAGGGCAAGGGAAAGAA 57.807 40.909 0.00 0.00 0.00 2.52
113 114 4.552674 AGTAAAAGGGCAAGGGAAAGAAA 58.447 39.130 0.00 0.00 0.00 2.52
114 115 4.588951 AGTAAAAGGGCAAGGGAAAGAAAG 59.411 41.667 0.00 0.00 0.00 2.62
115 116 2.015456 AAGGGCAAGGGAAAGAAAGG 57.985 50.000 0.00 0.00 0.00 3.11
116 117 0.115152 AGGGCAAGGGAAAGAAAGGG 59.885 55.000 0.00 0.00 0.00 3.95
117 118 0.114364 GGGCAAGGGAAAGAAAGGGA 59.886 55.000 0.00 0.00 0.00 4.20
118 119 1.482365 GGGCAAGGGAAAGAAAGGGAA 60.482 52.381 0.00 0.00 0.00 3.97
119 120 1.618837 GGCAAGGGAAAGAAAGGGAAC 59.381 52.381 0.00 0.00 0.00 3.62
177 178 3.734776 ATCAGTAGCGCGGTTTAAAAC 57.265 42.857 19.09 8.29 0.00 2.43
225 227 0.379316 GGGGTATAAAAACCGCGCTG 59.621 55.000 5.56 0.00 41.90 5.18
318 365 3.009805 TGGATAGGCCATAGTAGTAGCGA 59.990 47.826 5.01 0.00 43.33 4.93
319 366 3.628487 GGATAGGCCATAGTAGTAGCGAG 59.372 52.174 5.01 0.00 36.34 5.03
322 369 0.889306 GCCATAGTAGTAGCGAGGGG 59.111 60.000 0.00 0.00 0.00 4.79
323 370 1.822457 GCCATAGTAGTAGCGAGGGGT 60.822 57.143 0.00 0.00 0.00 4.95
325 372 3.876945 GCCATAGTAGTAGCGAGGGGTAT 60.877 52.174 0.00 0.00 0.00 2.73
327 374 5.503927 CCATAGTAGTAGCGAGGGGTATAA 58.496 45.833 0.00 0.00 0.00 0.98
328 375 5.948162 CCATAGTAGTAGCGAGGGGTATAAA 59.052 44.000 0.00 0.00 0.00 1.40
329 376 6.435277 CCATAGTAGTAGCGAGGGGTATAAAA 59.565 42.308 0.00 0.00 0.00 1.52
343 390 2.229675 ATAAAACCGGCGCTACTACC 57.770 50.000 7.64 0.00 0.00 3.18
393 442 2.294078 CCACCCCACCACTCTCTCC 61.294 68.421 0.00 0.00 0.00 3.71
403 456 1.063341 CCACTCTCTCCCTCTCATCCA 60.063 57.143 0.00 0.00 0.00 3.41
580 633 2.093500 CCTTCGTCCAGATCCAACATGA 60.093 50.000 0.00 0.00 0.00 3.07
615 668 2.224159 GCCACCCTCTTCTCCACCA 61.224 63.158 0.00 0.00 0.00 4.17
739 1374 3.461773 GGCGGCTCCTGCTACTCA 61.462 66.667 0.00 0.00 39.59 3.41
747 1382 1.478510 CTCCTGCTACTCATGGTCGTT 59.521 52.381 0.00 0.00 0.00 3.85
778 2133 3.461773 GGTAGCAGAGCGAGGGCA 61.462 66.667 0.00 0.00 43.41 5.36
829 2184 3.990318 TCGTCGGATACTAGTAGTCGA 57.010 47.619 19.75 19.75 0.00 4.20
869 2224 1.419922 CGTTCAAGATTCCGGCGTG 59.580 57.895 6.01 0.00 0.00 5.34
889 2253 4.196778 TTGCGTGCTGGTTGGGGA 62.197 61.111 0.00 0.00 0.00 4.81
928 2300 4.043596 AGGGGAGATTTACTTGCTCATCT 58.956 43.478 0.00 0.00 0.00 2.90
940 2312 4.765856 ACTTGCTCATCTGCTCTTTGATTT 59.234 37.500 0.00 0.00 0.00 2.17
951 2323 4.280677 TGCTCTTTGATTTGTTTCCCGATT 59.719 37.500 0.00 0.00 0.00 3.34
1028 2400 3.549997 GCAACTGCAATGACAACGT 57.450 47.368 3.45 0.00 41.59 3.99
1233 2703 1.697432 TCGTGGGGTGAATCTCACTTT 59.303 47.619 6.74 0.00 46.19 2.66
1324 5458 9.601810 TCTACATCAGTTATCATGTATTAGGGT 57.398 33.333 0.00 0.00 35.44 4.34
1390 5524 2.872732 AGACTTCAGAGTTGGGACGTA 58.127 47.619 0.00 0.00 35.88 3.57
1436 5704 7.280769 GTTGTCCAAGCGATTAAATTGAAAAC 58.719 34.615 0.00 0.00 0.00 2.43
1445 5713 9.271828 AGCGATTAAATTGAAAACAAAATCCTT 57.728 25.926 0.00 0.00 0.00 3.36
1550 5819 7.527568 TTGCATTGATGGCTAATGATGATTA 57.472 32.000 11.85 0.00 37.65 1.75
1605 5875 5.730550 TGCACTCGATAACCAAGTATTCTT 58.269 37.500 0.00 0.00 0.00 2.52
1665 5935 1.138266 TGCTTATTGTACGCTCCTCCC 59.862 52.381 0.00 0.00 0.00 4.30
1669 5939 4.442472 GCTTATTGTACGCTCCTCCCTTTA 60.442 45.833 0.00 0.00 0.00 1.85
1804 6081 2.362760 TTGGCCGCCATTGAGCAT 60.363 55.556 14.30 0.00 31.53 3.79
1860 6137 0.824109 TCAGCGGACAAGGGAGTATG 59.176 55.000 0.00 0.00 0.00 2.39
1862 6139 1.414181 CAGCGGACAAGGGAGTATGAT 59.586 52.381 0.00 0.00 0.00 2.45
1885 6162 4.202182 TGCGAGACATCATCATCATCAAGA 60.202 41.667 0.00 0.00 0.00 3.02
1896 6173 3.651423 TCATCATCAAGAGAGCATGGGAT 59.349 43.478 0.00 0.00 0.00 3.85
1938 6215 9.607333 AGTATCTGATTATCCTTACCTTCATCA 57.393 33.333 0.00 0.00 0.00 3.07
1948 6225 4.504864 CCTTACCTTCATCAGAACCACACA 60.505 45.833 0.00 0.00 0.00 3.72
1957 6234 4.241590 TCAGAACCACACATGCATTTTC 57.758 40.909 0.00 0.00 0.00 2.29
2100 6377 1.228956 ACCGTACCCTGCACCACTA 60.229 57.895 0.00 0.00 0.00 2.74
2111 6388 4.323417 CCTGCACCACTATCAACAAAGTA 58.677 43.478 0.00 0.00 0.00 2.24
2157 6434 5.933617 TCCATATTTCATCTCTTCACCTGG 58.066 41.667 0.00 0.00 0.00 4.45
2181 6458 3.141398 TGTCTCCGTAGTTACTTGTCGT 58.859 45.455 0.00 0.00 0.00 4.34
2408 6686 7.885399 AGAAGTAAACCTGAGCAGTATTTGATT 59.115 33.333 7.04 3.31 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.100916 GCATCATGAAGAGCTTGGCAAT 59.899 45.455 0.00 0.00 0.00 3.56
4 5 1.065701 CAGCATCATGAAGAGCTTGGC 59.934 52.381 15.44 3.74 34.61 4.52
5 6 2.640184 TCAGCATCATGAAGAGCTTGG 58.360 47.619 15.44 8.03 34.61 3.61
6 7 4.696899 TTTCAGCATCATGAAGAGCTTG 57.303 40.909 15.44 11.91 40.16 4.01
7 8 4.035324 CGATTTCAGCATCATGAAGAGCTT 59.965 41.667 15.44 4.45 40.16 3.74
8 9 3.560481 CGATTTCAGCATCATGAAGAGCT 59.440 43.478 13.08 13.08 40.16 4.09
9 10 3.558829 TCGATTTCAGCATCATGAAGAGC 59.441 43.478 0.00 4.68 40.16 4.09
10 11 4.317909 CGTCGATTTCAGCATCATGAAGAG 60.318 45.833 0.00 0.00 40.16 2.85
11 12 3.553105 CGTCGATTTCAGCATCATGAAGA 59.447 43.478 0.00 0.00 40.16 2.87
12 13 3.553105 TCGTCGATTTCAGCATCATGAAG 59.447 43.478 0.00 0.00 40.16 3.02
13 14 3.520569 TCGTCGATTTCAGCATCATGAA 58.479 40.909 0.00 0.00 37.41 2.57
14 15 3.163630 TCGTCGATTTCAGCATCATGA 57.836 42.857 0.00 0.00 0.00 3.07
15 16 3.302935 CCTTCGTCGATTTCAGCATCATG 60.303 47.826 0.00 0.00 0.00 3.07
16 17 2.868583 CCTTCGTCGATTTCAGCATCAT 59.131 45.455 0.00 0.00 0.00 2.45
17 18 2.270923 CCTTCGTCGATTTCAGCATCA 58.729 47.619 0.00 0.00 0.00 3.07
18 19 2.271800 ACCTTCGTCGATTTCAGCATC 58.728 47.619 0.00 0.00 0.00 3.91
19 20 2.386661 ACCTTCGTCGATTTCAGCAT 57.613 45.000 0.00 0.00 0.00 3.79
20 21 2.490509 TCTACCTTCGTCGATTTCAGCA 59.509 45.455 0.00 0.00 0.00 4.41
21 22 3.146618 TCTACCTTCGTCGATTTCAGC 57.853 47.619 0.00 0.00 0.00 4.26
22 23 5.805486 TGATTTCTACCTTCGTCGATTTCAG 59.195 40.000 0.00 0.00 0.00 3.02
23 24 5.716094 TGATTTCTACCTTCGTCGATTTCA 58.284 37.500 0.00 0.00 0.00 2.69
24 25 6.530534 TCTTGATTTCTACCTTCGTCGATTTC 59.469 38.462 0.00 0.00 0.00 2.17
25 26 6.395629 TCTTGATTTCTACCTTCGTCGATTT 58.604 36.000 0.00 0.00 0.00 2.17
26 27 5.962433 TCTTGATTTCTACCTTCGTCGATT 58.038 37.500 0.00 0.00 0.00 3.34
27 28 5.578005 TCTTGATTTCTACCTTCGTCGAT 57.422 39.130 0.00 0.00 0.00 3.59
28 29 5.381174 TTCTTGATTTCTACCTTCGTCGA 57.619 39.130 0.00 0.00 0.00 4.20
29 30 6.145696 ACTTTTCTTGATTTCTACCTTCGTCG 59.854 38.462 0.00 0.00 0.00 5.12
30 31 7.422878 ACTTTTCTTGATTTCTACCTTCGTC 57.577 36.000 0.00 0.00 0.00 4.20
31 32 7.117956 GCTACTTTTCTTGATTTCTACCTTCGT 59.882 37.037 0.00 0.00 0.00 3.85
32 33 7.117812 TGCTACTTTTCTTGATTTCTACCTTCG 59.882 37.037 0.00 0.00 0.00 3.79
33 34 8.324163 TGCTACTTTTCTTGATTTCTACCTTC 57.676 34.615 0.00 0.00 0.00 3.46
34 35 8.691661 TTGCTACTTTTCTTGATTTCTACCTT 57.308 30.769 0.00 0.00 0.00 3.50
35 36 7.939588 ACTTGCTACTTTTCTTGATTTCTACCT 59.060 33.333 0.00 0.00 0.00 3.08
36 37 8.017946 CACTTGCTACTTTTCTTGATTTCTACC 58.982 37.037 0.00 0.00 0.00 3.18
37 38 8.560374 ACACTTGCTACTTTTCTTGATTTCTAC 58.440 33.333 0.00 0.00 0.00 2.59
38 39 8.677148 ACACTTGCTACTTTTCTTGATTTCTA 57.323 30.769 0.00 0.00 0.00 2.10
39 40 7.573968 ACACTTGCTACTTTTCTTGATTTCT 57.426 32.000 0.00 0.00 0.00 2.52
40 41 7.915397 TCAACACTTGCTACTTTTCTTGATTTC 59.085 33.333 0.00 0.00 0.00 2.17
41 42 7.771183 TCAACACTTGCTACTTTTCTTGATTT 58.229 30.769 0.00 0.00 0.00 2.17
42 43 7.333528 TCAACACTTGCTACTTTTCTTGATT 57.666 32.000 0.00 0.00 0.00 2.57
43 44 6.942532 TCAACACTTGCTACTTTTCTTGAT 57.057 33.333 0.00 0.00 0.00 2.57
44 45 6.238731 CCATCAACACTTGCTACTTTTCTTGA 60.239 38.462 0.00 0.00 0.00 3.02
45 46 5.916883 CCATCAACACTTGCTACTTTTCTTG 59.083 40.000 0.00 0.00 0.00 3.02
46 47 5.594317 ACCATCAACACTTGCTACTTTTCTT 59.406 36.000 0.00 0.00 0.00 2.52
47 48 5.133221 ACCATCAACACTTGCTACTTTTCT 58.867 37.500 0.00 0.00 0.00 2.52
48 49 5.438761 ACCATCAACACTTGCTACTTTTC 57.561 39.130 0.00 0.00 0.00 2.29
49 50 5.359576 TCAACCATCAACACTTGCTACTTTT 59.640 36.000 0.00 0.00 0.00 2.27
50 51 4.887071 TCAACCATCAACACTTGCTACTTT 59.113 37.500 0.00 0.00 0.00 2.66
51 52 4.275936 GTCAACCATCAACACTTGCTACTT 59.724 41.667 0.00 0.00 0.00 2.24
52 53 3.815401 GTCAACCATCAACACTTGCTACT 59.185 43.478 0.00 0.00 0.00 2.57
53 54 3.563808 TGTCAACCATCAACACTTGCTAC 59.436 43.478 0.00 0.00 0.00 3.58
54 55 3.814625 TGTCAACCATCAACACTTGCTA 58.185 40.909 0.00 0.00 0.00 3.49
55 56 2.653726 TGTCAACCATCAACACTTGCT 58.346 42.857 0.00 0.00 0.00 3.91
56 57 3.066621 TCTTGTCAACCATCAACACTTGC 59.933 43.478 0.00 0.00 0.00 4.01
57 58 4.498009 GGTCTTGTCAACCATCAACACTTG 60.498 45.833 0.00 0.00 36.75 3.16
58 59 3.632145 GGTCTTGTCAACCATCAACACTT 59.368 43.478 0.00 0.00 36.75 3.16
59 60 3.214328 GGTCTTGTCAACCATCAACACT 58.786 45.455 0.00 0.00 36.75 3.55
60 61 2.948979 TGGTCTTGTCAACCATCAACAC 59.051 45.455 0.00 0.00 41.84 3.32
61 62 3.289407 TGGTCTTGTCAACCATCAACA 57.711 42.857 0.00 0.00 41.84 3.33
67 68 4.080807 TGAAACTAGTGGTCTTGTCAACCA 60.081 41.667 0.00 0.00 44.46 3.67
68 69 4.448210 TGAAACTAGTGGTCTTGTCAACC 58.552 43.478 0.00 0.00 37.31 3.77
69 70 5.585047 ACTTGAAACTAGTGGTCTTGTCAAC 59.415 40.000 0.00 0.00 0.00 3.18
70 71 5.741011 ACTTGAAACTAGTGGTCTTGTCAA 58.259 37.500 0.00 0.00 0.00 3.18
71 72 5.353394 ACTTGAAACTAGTGGTCTTGTCA 57.647 39.130 0.00 0.00 0.00 3.58
72 73 7.781548 TTTACTTGAAACTAGTGGTCTTGTC 57.218 36.000 0.00 0.00 0.00 3.18
73 74 7.282450 CCTTTTACTTGAAACTAGTGGTCTTGT 59.718 37.037 0.00 3.84 0.00 3.16
74 75 7.255139 CCCTTTTACTTGAAACTAGTGGTCTTG 60.255 40.741 0.00 0.00 0.00 3.02
75 76 6.771267 CCCTTTTACTTGAAACTAGTGGTCTT 59.229 38.462 0.00 0.00 0.00 3.01
76 77 6.296803 CCCTTTTACTTGAAACTAGTGGTCT 58.703 40.000 0.00 0.00 0.00 3.85
77 78 5.048921 GCCCTTTTACTTGAAACTAGTGGTC 60.049 44.000 0.00 0.00 0.00 4.02
78 79 4.825634 GCCCTTTTACTTGAAACTAGTGGT 59.174 41.667 0.00 0.00 0.00 4.16
79 80 4.825085 TGCCCTTTTACTTGAAACTAGTGG 59.175 41.667 0.00 0.00 0.00 4.00
80 81 6.385649 TTGCCCTTTTACTTGAAACTAGTG 57.614 37.500 0.00 0.00 0.00 2.74
81 82 5.535030 CCTTGCCCTTTTACTTGAAACTAGT 59.465 40.000 0.00 0.00 0.00 2.57
82 83 5.048013 CCCTTGCCCTTTTACTTGAAACTAG 60.048 44.000 0.00 0.00 0.00 2.57
83 84 4.830600 CCCTTGCCCTTTTACTTGAAACTA 59.169 41.667 0.00 0.00 0.00 2.24
84 85 3.641436 CCCTTGCCCTTTTACTTGAAACT 59.359 43.478 0.00 0.00 0.00 2.66
85 86 3.639561 TCCCTTGCCCTTTTACTTGAAAC 59.360 43.478 0.00 0.00 0.00 2.78
86 87 3.917300 TCCCTTGCCCTTTTACTTGAAA 58.083 40.909 0.00 0.00 0.00 2.69
87 88 3.603965 TCCCTTGCCCTTTTACTTGAA 57.396 42.857 0.00 0.00 0.00 2.69
88 89 3.603965 TTCCCTTGCCCTTTTACTTGA 57.396 42.857 0.00 0.00 0.00 3.02
89 90 3.895041 TCTTTCCCTTGCCCTTTTACTTG 59.105 43.478 0.00 0.00 0.00 3.16
90 91 4.193240 TCTTTCCCTTGCCCTTTTACTT 57.807 40.909 0.00 0.00 0.00 2.24
91 92 3.895704 TCTTTCCCTTGCCCTTTTACT 57.104 42.857 0.00 0.00 0.00 2.24
92 93 4.262463 CCTTTCTTTCCCTTGCCCTTTTAC 60.262 45.833 0.00 0.00 0.00 2.01
93 94 3.901222 CCTTTCTTTCCCTTGCCCTTTTA 59.099 43.478 0.00 0.00 0.00 1.52
94 95 2.705658 CCTTTCTTTCCCTTGCCCTTTT 59.294 45.455 0.00 0.00 0.00 2.27
95 96 2.329267 CCTTTCTTTCCCTTGCCCTTT 58.671 47.619 0.00 0.00 0.00 3.11
96 97 1.483118 CCCTTTCTTTCCCTTGCCCTT 60.483 52.381 0.00 0.00 0.00 3.95
97 98 0.115152 CCCTTTCTTTCCCTTGCCCT 59.885 55.000 0.00 0.00 0.00 5.19
98 99 0.114364 TCCCTTTCTTTCCCTTGCCC 59.886 55.000 0.00 0.00 0.00 5.36
99 100 1.618837 GTTCCCTTTCTTTCCCTTGCC 59.381 52.381 0.00 0.00 0.00 4.52
100 101 2.598565 AGTTCCCTTTCTTTCCCTTGC 58.401 47.619 0.00 0.00 0.00 4.01
101 102 4.038042 GTGAAGTTCCCTTTCTTTCCCTTG 59.962 45.833 0.00 0.00 0.00 3.61
102 103 4.215908 GTGAAGTTCCCTTTCTTTCCCTT 58.784 43.478 0.00 0.00 0.00 3.95
103 104 3.204382 TGTGAAGTTCCCTTTCTTTCCCT 59.796 43.478 0.00 0.00 0.00 4.20
104 105 3.318275 GTGTGAAGTTCCCTTTCTTTCCC 59.682 47.826 0.00 0.00 0.00 3.97
105 106 4.207955 AGTGTGAAGTTCCCTTTCTTTCC 58.792 43.478 0.00 0.00 0.00 3.13
106 107 6.056236 AGTAGTGTGAAGTTCCCTTTCTTTC 58.944 40.000 0.00 0.00 0.00 2.62
107 108 6.002653 AGTAGTGTGAAGTTCCCTTTCTTT 57.997 37.500 0.00 0.00 0.00 2.52
108 109 5.632034 AGTAGTGTGAAGTTCCCTTTCTT 57.368 39.130 0.00 0.00 0.00 2.52
109 110 5.246429 CCTAGTAGTGTGAAGTTCCCTTTCT 59.754 44.000 0.00 0.00 0.00 2.52
110 111 5.480205 CCTAGTAGTGTGAAGTTCCCTTTC 58.520 45.833 0.00 0.00 0.00 2.62
111 112 4.286291 CCCTAGTAGTGTGAAGTTCCCTTT 59.714 45.833 0.00 0.00 0.00 3.11
112 113 3.838903 CCCTAGTAGTGTGAAGTTCCCTT 59.161 47.826 0.00 0.00 0.00 3.95
113 114 3.077088 TCCCTAGTAGTGTGAAGTTCCCT 59.923 47.826 0.00 0.00 0.00 4.20
114 115 3.438183 TCCCTAGTAGTGTGAAGTTCCC 58.562 50.000 0.00 0.00 0.00 3.97
115 116 5.479124 TTTCCCTAGTAGTGTGAAGTTCC 57.521 43.478 0.00 0.00 0.00 3.62
116 117 5.699915 GGTTTTCCCTAGTAGTGTGAAGTTC 59.300 44.000 0.00 0.00 0.00 3.01
117 118 5.368816 AGGTTTTCCCTAGTAGTGTGAAGTT 59.631 40.000 0.00 0.00 43.87 2.66
118 119 4.906060 AGGTTTTCCCTAGTAGTGTGAAGT 59.094 41.667 0.00 0.00 43.87 3.01
119 120 5.485209 AGGTTTTCCCTAGTAGTGTGAAG 57.515 43.478 0.00 0.00 43.87 3.02
120 121 5.899631 AAGGTTTTCCCTAGTAGTGTGAA 57.100 39.130 0.00 0.00 45.47 3.18
121 122 6.575649 GCATAAGGTTTTCCCTAGTAGTGTGA 60.576 42.308 0.00 0.00 45.47 3.58
122 123 5.585047 GCATAAGGTTTTCCCTAGTAGTGTG 59.415 44.000 0.00 0.00 45.47 3.82
145 146 3.242123 GCGCTACTGATAAACTTCTGTGC 60.242 47.826 0.00 0.00 0.00 4.57
177 178 5.470047 CTACTAATTACAGTAGCCCCCAG 57.530 47.826 3.09 0.00 41.06 4.45
204 206 1.097232 GCGCGGTTTTTATACCCCTT 58.903 50.000 8.83 0.00 34.56 3.95
263 265 1.473278 GAGACCACTTAGTAGCAGCGT 59.527 52.381 0.00 0.00 0.00 5.07
318 365 1.153107 GCGCCGGTTTTATACCCCT 60.153 57.895 1.90 0.00 44.70 4.79
319 366 0.106521 TAGCGCCGGTTTTATACCCC 59.893 55.000 2.29 0.00 44.70 4.95
322 369 3.052745 GGTAGTAGCGCCGGTTTTATAC 58.947 50.000 2.29 0.00 0.00 1.47
323 370 2.692557 TGGTAGTAGCGCCGGTTTTATA 59.307 45.455 2.29 0.00 0.00 0.98
325 372 0.894141 TGGTAGTAGCGCCGGTTTTA 59.106 50.000 2.29 0.00 0.00 1.52
327 374 0.390735 CTTGGTAGTAGCGCCGGTTT 60.391 55.000 2.29 0.00 0.00 3.27
328 375 1.217244 CTTGGTAGTAGCGCCGGTT 59.783 57.895 2.29 0.00 0.00 4.44
329 376 2.890371 CTTGGTAGTAGCGCCGGT 59.110 61.111 2.29 0.00 0.00 5.28
362 409 2.291043 GGGTGGGAGTGTGGATCGT 61.291 63.158 0.00 0.00 0.00 3.73
508 561 4.794439 CGTGACCGATGCTCGCCA 62.794 66.667 0.72 0.00 38.82 5.69
562 615 2.094026 CAGTCATGTTGGATCTGGACGA 60.094 50.000 0.00 0.00 0.00 4.20
747 1382 4.660611 TACCCCTTGGCGTCCCCA 62.661 66.667 0.00 0.00 43.51 4.96
757 1799 2.060980 CCTCGCTCTGCTACCCCTT 61.061 63.158 0.00 0.00 0.00 3.95
763 2100 2.725312 CCTTGCCCTCGCTCTGCTA 61.725 63.158 0.00 0.00 35.36 3.49
778 2133 1.753463 CCTCGGAGTACTCGGCCTT 60.753 63.158 22.12 0.00 0.00 4.35
829 2184 2.107204 GAGCCACATCCCTTGGACATAT 59.893 50.000 0.00 0.00 36.02 1.78
869 2224 2.639286 CCAACCAGCACGCAACTC 59.361 61.111 0.00 0.00 0.00 3.01
889 2253 0.107017 CCTTCACCTTGGCGATGGAT 60.107 55.000 7.68 0.00 0.00 3.41
928 2300 3.218453 TCGGGAAACAAATCAAAGAGCA 58.782 40.909 0.00 0.00 0.00 4.26
940 2312 4.517453 AGACGAAATGAAAATCGGGAAACA 59.483 37.500 0.00 0.00 43.11 2.83
951 2323 5.971202 GCAGTTTTGAAGAGACGAAATGAAA 59.029 36.000 0.00 0.00 0.00 2.69
1022 2394 3.188159 TCCTTACTTTGCTGACGTTGT 57.812 42.857 0.00 0.00 0.00 3.32
1028 2400 2.543777 AGCGTTCCTTACTTTGCTGA 57.456 45.000 0.00 0.00 0.00 4.26
1369 5503 2.872732 ACGTCCCAACTCTGAAGTCTA 58.127 47.619 0.00 0.00 33.48 2.59
1382 5516 3.478857 ACACTGAAACAATACGTCCCA 57.521 42.857 0.00 0.00 0.00 4.37
1390 5524 5.036117 ACCTGACACTACACTGAAACAAT 57.964 39.130 0.00 0.00 0.00 2.71
1445 5713 7.330946 GCACACCGTATATGCTAATCTTATCAA 59.669 37.037 0.00 0.00 36.40 2.57
1588 5858 5.057149 CCCTGGAAGAATACTTGGTTATCG 58.943 45.833 0.00 0.00 36.39 2.92
1862 6139 3.738830 TGATGATGATGATGTCTCGCA 57.261 42.857 0.00 0.00 0.00 5.10
1919 6196 7.442666 GTGGTTCTGATGAAGGTAAGGATAATC 59.557 40.741 0.00 0.00 32.15 1.75
1938 6215 4.669206 TTGAAAATGCATGTGTGGTTCT 57.331 36.364 0.00 0.00 0.00 3.01
1990 6267 1.426251 ATGGACACCTCCTGCACCAA 61.426 55.000 0.00 0.00 37.48 3.67
2055 6332 4.212913 GCGATGCGGAGAGAGGCA 62.213 66.667 0.00 0.00 44.29 4.75
2100 6377 2.930040 CCGACGAGCATACTTTGTTGAT 59.070 45.455 0.00 0.00 0.00 2.57
2157 6434 4.792189 CGACAAGTAACTACGGAGACATTC 59.208 45.833 0.00 0.00 0.00 2.67
2209 6486 2.282745 GCAAGGAGCAGGCCAACT 60.283 61.111 5.01 0.00 44.79 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.