Multiple sequence alignment - TraesCS6A01G205400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G205400 chr6A 100.000 2438 0 0 1 2438 358963551 358961114 0.000000e+00 4503
1 TraesCS6A01G205400 chr2B 95.723 2034 73 6 1 2025 325636138 325638166 0.000000e+00 3262
2 TraesCS6A01G205400 chr2B 94.985 2034 80 7 1 2025 484104268 484106288 0.000000e+00 3171
3 TraesCS6A01G205400 chr2A 95.428 2034 83 3 1 2025 77801150 77803182 0.000000e+00 3232
4 TraesCS6A01G205400 chr2A 94.985 2034 81 4 1 2025 382857306 382855285 0.000000e+00 3171
5 TraesCS6A01G205400 chr1D 95.285 2036 84 5 1 2026 176359478 176361511 0.000000e+00 3217
6 TraesCS6A01G205400 chr1D 94.595 2035 97 7 1 2025 356879924 356881955 0.000000e+00 3136
7 TraesCS6A01G205400 chr4B 95.105 2043 80 7 1 2027 364054536 364052498 0.000000e+00 3201
8 TraesCS6A01G205400 chr6D 95.037 2035 89 5 1 2025 462400418 462398386 0.000000e+00 3188
9 TraesCS6A01G205400 chr6D 94.889 2035 90 7 1 2025 452072718 452070688 0.000000e+00 3169
10 TraesCS6A01G205400 chr5A 95.034 2034 90 5 1 2025 472508527 472510558 0.000000e+00 3186
11 TraesCS6A01G205400 chr5A 94.887 841 34 1 1194 2025 426748730 426749570 0.000000e+00 1306
12 TraesCS6A01G205400 chr3D 94.425 1130 48 2 905 2025 90829302 90830425 0.000000e+00 1724
13 TraesCS6A01G205400 chr1A 93.446 473 22 2 1563 2026 499753003 499753475 0.000000e+00 693
14 TraesCS6A01G205400 chr4D 92.138 407 27 4 1621 2025 439686102 439686505 9.780000e-159 569
15 TraesCS6A01G205400 chr6B 87.166 187 14 2 2062 2248 404374439 404374263 1.140000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G205400 chr6A 358961114 358963551 2437 True 4503 4503 100.000 1 2438 1 chr6A.!!$R1 2437
1 TraesCS6A01G205400 chr2B 325636138 325638166 2028 False 3262 3262 95.723 1 2025 1 chr2B.!!$F1 2024
2 TraesCS6A01G205400 chr2B 484104268 484106288 2020 False 3171 3171 94.985 1 2025 1 chr2B.!!$F2 2024
3 TraesCS6A01G205400 chr2A 77801150 77803182 2032 False 3232 3232 95.428 1 2025 1 chr2A.!!$F1 2024
4 TraesCS6A01G205400 chr2A 382855285 382857306 2021 True 3171 3171 94.985 1 2025 1 chr2A.!!$R1 2024
5 TraesCS6A01G205400 chr1D 176359478 176361511 2033 False 3217 3217 95.285 1 2026 1 chr1D.!!$F1 2025
6 TraesCS6A01G205400 chr1D 356879924 356881955 2031 False 3136 3136 94.595 1 2025 1 chr1D.!!$F2 2024
7 TraesCS6A01G205400 chr4B 364052498 364054536 2038 True 3201 3201 95.105 1 2027 1 chr4B.!!$R1 2026
8 TraesCS6A01G205400 chr6D 462398386 462400418 2032 True 3188 3188 95.037 1 2025 1 chr6D.!!$R2 2024
9 TraesCS6A01G205400 chr6D 452070688 452072718 2030 True 3169 3169 94.889 1 2025 1 chr6D.!!$R1 2024
10 TraesCS6A01G205400 chr5A 472508527 472510558 2031 False 3186 3186 95.034 1 2025 1 chr5A.!!$F2 2024
11 TraesCS6A01G205400 chr5A 426748730 426749570 840 False 1306 1306 94.887 1194 2025 1 chr5A.!!$F1 831
12 TraesCS6A01G205400 chr3D 90829302 90830425 1123 False 1724 1724 94.425 905 2025 1 chr3D.!!$F1 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 758 1.064825 AAGTTGTGACACCTAGGGGG 58.935 55.0 17.43 8.65 41.89 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 2417 0.035056 AGGGTGCGGGAGAGATTTTG 60.035 55.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.036408 GGTAAGCATTGAAAAATCCAGCATTC 59.964 38.462 0.00 0.00 0.00 2.67
212 213 6.015519 TCCAATTTCTGATTGAACGGATTGTT 60.016 34.615 0.56 0.00 45.61 2.83
226 227 8.842280 TGAACGGATTGTTAAGAAAATTAGTGT 58.158 29.630 0.00 0.00 42.09 3.55
256 257 2.525105 AAAATATTGTCTGCCGGGGT 57.475 45.000 2.18 0.00 0.00 4.95
268 270 1.342672 GCCGGGGTAAAGGAGATCCA 61.343 60.000 2.18 0.00 38.89 3.41
332 335 9.908152 ATGTCGGTCTTTAAAATTCCTAAAAAG 57.092 29.630 0.00 0.00 0.00 2.27
481 485 6.662414 TCGTGATATTCACTGTTTCAATCC 57.338 37.500 6.13 0.00 44.85 3.01
552 556 3.222173 TGTGTGCCACAATTCTAAGGT 57.778 42.857 0.00 0.00 41.69 3.50
710 714 9.605951 AATATAAATATTTGGGAAGATGCCTGT 57.394 29.630 11.05 0.00 28.99 4.00
725 729 3.088532 TGCCTGTATCCCAAATTGTGAC 58.911 45.455 0.00 0.00 0.00 3.67
726 730 2.097466 GCCTGTATCCCAAATTGTGACG 59.903 50.000 0.00 0.00 0.00 4.35
751 757 2.951229 AAAGTTGTGACACCTAGGGG 57.049 50.000 10.33 10.33 38.88 4.79
752 758 1.064825 AAGTTGTGACACCTAGGGGG 58.935 55.000 17.43 8.65 41.89 5.40
773 781 3.079578 GGGGACAACTGTTAACTAAGGC 58.920 50.000 7.22 0.00 0.00 4.35
822 830 6.485830 AATTCTTGGGACGAAGATCTGATA 57.514 37.500 0.00 0.00 31.98 2.15
892 900 3.130280 TCTCGCAACATGATATGCCAT 57.870 42.857 0.00 0.00 39.39 4.40
951 959 2.343101 TCGGTTCGGTCTGCTTATTTG 58.657 47.619 0.00 0.00 0.00 2.32
1056 1064 6.479972 AAGATATGGAAGTTATCGTGTCCA 57.520 37.500 0.00 0.00 44.07 4.02
1120 1129 1.216977 CCATGTCGGGTTACGCTCA 59.783 57.895 0.00 0.00 43.86 4.26
1293 1302 2.125188 GCTGGAGAGGCAGTGCTC 60.125 66.667 16.11 10.51 0.00 4.26
1425 1434 2.092968 AGTGCACAAGGAGACAACTCAA 60.093 45.455 21.04 0.00 44.22 3.02
1658 1673 6.407752 GGAGGAAACGGGAAGATTGACTATTA 60.408 42.308 0.00 0.00 0.00 0.98
1677 1692 2.183478 ACGAAGATGTGTTGATGGCA 57.817 45.000 0.00 0.00 0.00 4.92
1711 1726 8.402472 CGGCTCTTAAATTTGGTATAACATTGA 58.598 33.333 0.00 0.00 0.00 2.57
1755 1770 8.691661 ATTGCCTTATTATTAACTCGGACAAT 57.308 30.769 0.00 0.00 0.00 2.71
1758 1773 8.644216 TGCCTTATTATTAACTCGGACAATCTA 58.356 33.333 0.00 0.00 0.00 1.98
1759 1774 9.485206 GCCTTATTATTAACTCGGACAATCTAA 57.515 33.333 0.00 0.00 0.00 2.10
1869 1893 5.710984 ACTAGATTCGAACACTGTAACAGG 58.289 41.667 0.00 0.00 35.51 4.00
2052 2077 6.246420 CTTGATAACAAGGTCCAAACTGAG 57.754 41.667 4.87 0.00 46.67 3.35
2053 2078 4.651778 TGATAACAAGGTCCAAACTGAGG 58.348 43.478 0.00 0.00 0.00 3.86
2054 2079 2.364972 AACAAGGTCCAAACTGAGGG 57.635 50.000 0.00 0.00 0.00 4.30
2055 2080 0.478507 ACAAGGTCCAAACTGAGGGG 59.521 55.000 0.00 0.00 0.00 4.79
2056 2081 0.478507 CAAGGTCCAAACTGAGGGGT 59.521 55.000 0.00 0.00 0.00 4.95
2057 2082 0.478507 AAGGTCCAAACTGAGGGGTG 59.521 55.000 0.00 0.00 0.00 4.61
2058 2083 0.697854 AGGTCCAAACTGAGGGGTGT 60.698 55.000 0.00 0.00 0.00 4.16
2059 2084 0.537371 GGTCCAAACTGAGGGGTGTG 60.537 60.000 0.00 0.00 0.00 3.82
2060 2085 0.537371 GTCCAAACTGAGGGGTGTGG 60.537 60.000 0.00 0.00 43.94 4.17
2061 2086 1.903404 CCAAACTGAGGGGTGTGGC 60.903 63.158 0.00 0.00 37.72 5.01
2062 2087 2.113139 AAACTGAGGGGTGTGGCG 59.887 61.111 0.00 0.00 0.00 5.69
2063 2088 2.448582 AAACTGAGGGGTGTGGCGA 61.449 57.895 0.00 0.00 0.00 5.54
2064 2089 2.397413 AAACTGAGGGGTGTGGCGAG 62.397 60.000 0.00 0.00 0.00 5.03
2065 2090 3.314331 CTGAGGGGTGTGGCGAGT 61.314 66.667 0.00 0.00 0.00 4.18
2066 2091 3.302347 CTGAGGGGTGTGGCGAGTC 62.302 68.421 0.00 0.00 0.00 3.36
2067 2092 2.997897 GAGGGGTGTGGCGAGTCT 60.998 66.667 0.00 0.00 0.00 3.24
2068 2093 2.526873 AGGGGTGTGGCGAGTCTT 60.527 61.111 0.00 0.00 0.00 3.01
2069 2094 2.113243 GAGGGGTGTGGCGAGTCTTT 62.113 60.000 0.00 0.00 0.00 2.52
2070 2095 0.834687 AGGGGTGTGGCGAGTCTTTA 60.835 55.000 0.00 0.00 0.00 1.85
2071 2096 0.391263 GGGGTGTGGCGAGTCTTTAG 60.391 60.000 0.00 0.00 0.00 1.85
2072 2097 0.391263 GGGTGTGGCGAGTCTTTAGG 60.391 60.000 0.00 0.00 0.00 2.69
2073 2098 0.606604 GGTGTGGCGAGTCTTTAGGA 59.393 55.000 0.00 0.00 0.00 2.94
2074 2099 1.404315 GGTGTGGCGAGTCTTTAGGAG 60.404 57.143 0.00 0.00 0.00 3.69
2075 2100 0.246635 TGTGGCGAGTCTTTAGGAGC 59.753 55.000 0.00 0.00 0.00 4.70
2076 2101 0.246635 GTGGCGAGTCTTTAGGAGCA 59.753 55.000 0.00 0.00 0.00 4.26
2077 2102 1.134670 GTGGCGAGTCTTTAGGAGCAT 60.135 52.381 0.00 0.00 0.00 3.79
2078 2103 1.137086 TGGCGAGTCTTTAGGAGCATC 59.863 52.381 0.00 0.00 0.00 3.91
2079 2104 1.410882 GGCGAGTCTTTAGGAGCATCT 59.589 52.381 0.00 0.00 33.73 2.90
2080 2105 2.544903 GGCGAGTCTTTAGGAGCATCTC 60.545 54.545 0.00 0.00 33.73 2.75
2081 2106 2.360801 GCGAGTCTTTAGGAGCATCTCT 59.639 50.000 0.00 0.00 33.73 3.10
2082 2107 3.566322 GCGAGTCTTTAGGAGCATCTCTA 59.434 47.826 0.00 0.00 33.73 2.43
2083 2108 4.555906 GCGAGTCTTTAGGAGCATCTCTAC 60.556 50.000 0.00 0.00 33.73 2.59
2084 2109 4.819630 CGAGTCTTTAGGAGCATCTCTACT 59.180 45.833 0.00 0.00 39.87 2.57
2085 2110 5.049680 CGAGTCTTTAGGAGCATCTCTACTC 60.050 48.000 0.00 0.00 37.18 2.59
2086 2111 6.013554 AGTCTTTAGGAGCATCTCTACTCT 57.986 41.667 0.00 0.00 37.18 3.24
2087 2112 6.062095 AGTCTTTAGGAGCATCTCTACTCTC 58.938 44.000 0.00 0.00 37.18 3.20
2088 2113 5.825679 GTCTTTAGGAGCATCTCTACTCTCA 59.174 44.000 0.00 0.00 37.18 3.27
2089 2114 6.320164 GTCTTTAGGAGCATCTCTACTCTCAA 59.680 42.308 0.00 0.00 37.18 3.02
2090 2115 6.545666 TCTTTAGGAGCATCTCTACTCTCAAG 59.454 42.308 0.00 0.00 37.18 3.02
2091 2116 3.565307 AGGAGCATCTCTACTCTCAAGG 58.435 50.000 0.00 0.00 26.12 3.61
2092 2117 2.035832 GGAGCATCTCTACTCTCAAGGC 59.964 54.545 0.00 0.00 33.73 4.35
2093 2118 2.692557 GAGCATCTCTACTCTCAAGGCA 59.307 50.000 0.00 0.00 0.00 4.75
2094 2119 2.694628 AGCATCTCTACTCTCAAGGCAG 59.305 50.000 0.00 0.00 0.00 4.85
2095 2120 2.802774 GCATCTCTACTCTCAAGGCAGC 60.803 54.545 0.00 0.00 0.00 5.25
2096 2121 2.222227 TCTCTACTCTCAAGGCAGCA 57.778 50.000 0.00 0.00 0.00 4.41
2097 2122 2.098614 TCTCTACTCTCAAGGCAGCAG 58.901 52.381 0.00 0.00 0.00 4.24
2098 2123 0.534412 TCTACTCTCAAGGCAGCAGC 59.466 55.000 0.00 0.00 41.10 5.25
2099 2124 0.805322 CTACTCTCAAGGCAGCAGCG 60.805 60.000 0.00 0.00 43.41 5.18
2100 2125 1.250840 TACTCTCAAGGCAGCAGCGA 61.251 55.000 0.00 0.00 43.41 4.93
2101 2126 1.375140 CTCTCAAGGCAGCAGCGAA 60.375 57.895 0.00 0.00 43.41 4.70
2102 2127 1.633852 CTCTCAAGGCAGCAGCGAAC 61.634 60.000 0.00 0.00 43.41 3.95
2103 2128 1.962822 CTCAAGGCAGCAGCGAACA 60.963 57.895 0.00 0.00 43.41 3.18
2104 2129 1.302752 TCAAGGCAGCAGCGAACAT 60.303 52.632 0.00 0.00 43.41 2.71
2105 2130 0.036483 TCAAGGCAGCAGCGAACATA 60.036 50.000 0.00 0.00 43.41 2.29
2106 2131 0.376152 CAAGGCAGCAGCGAACATAG 59.624 55.000 0.00 0.00 43.41 2.23
2107 2132 1.372087 AAGGCAGCAGCGAACATAGC 61.372 55.000 0.00 0.00 43.41 2.97
2109 2134 1.372087 GGCAGCAGCGAACATAGCTT 61.372 55.000 0.00 0.00 44.06 3.74
2110 2135 1.290203 GCAGCAGCGAACATAGCTTA 58.710 50.000 0.00 0.00 44.06 3.09
2111 2136 1.665679 GCAGCAGCGAACATAGCTTAA 59.334 47.619 0.00 0.00 44.06 1.85
2112 2137 2.289002 GCAGCAGCGAACATAGCTTAAT 59.711 45.455 0.00 0.00 44.06 1.40
2113 2138 3.242870 GCAGCAGCGAACATAGCTTAATT 60.243 43.478 0.00 0.00 44.06 1.40
2114 2139 4.521943 CAGCAGCGAACATAGCTTAATTC 58.478 43.478 0.00 0.00 44.06 2.17
2115 2140 3.246226 AGCAGCGAACATAGCTTAATTCG 59.754 43.478 16.97 16.97 44.06 3.34
2120 2145 5.643339 CGAACATAGCTTAATTCGCTTCT 57.357 39.130 11.43 0.00 37.70 2.85
2121 2146 6.037423 CGAACATAGCTTAATTCGCTTCTT 57.963 37.500 11.43 0.00 37.70 2.52
2122 2147 5.898606 CGAACATAGCTTAATTCGCTTCTTG 59.101 40.000 11.43 6.49 37.70 3.02
2123 2148 6.237835 CGAACATAGCTTAATTCGCTTCTTGA 60.238 38.462 11.43 0.00 37.70 3.02
2124 2149 7.517417 CGAACATAGCTTAATTCGCTTCTTGAT 60.517 37.037 11.43 0.57 37.70 2.57
2125 2150 6.952743 ACATAGCTTAATTCGCTTCTTGATG 58.047 36.000 7.38 7.37 38.86 3.07
2126 2151 4.284378 AGCTTAATTCGCTTCTTGATGC 57.716 40.909 0.00 0.00 32.98 3.91
2127 2152 3.065925 AGCTTAATTCGCTTCTTGATGCC 59.934 43.478 3.46 0.00 32.98 4.40
2128 2153 3.065925 GCTTAATTCGCTTCTTGATGCCT 59.934 43.478 3.46 0.00 0.00 4.75
2129 2154 4.595116 CTTAATTCGCTTCTTGATGCCTG 58.405 43.478 3.46 0.00 0.00 4.85
2130 2155 0.737219 ATTCGCTTCTTGATGCCTGC 59.263 50.000 3.46 0.00 0.00 4.85
2131 2156 0.606130 TTCGCTTCTTGATGCCTGCA 60.606 50.000 0.00 0.00 0.00 4.41
2132 2157 0.606130 TCGCTTCTTGATGCCTGCAA 60.606 50.000 0.00 0.00 0.00 4.08
2133 2158 0.241749 CGCTTCTTGATGCCTGCAAA 59.758 50.000 0.00 0.00 0.00 3.68
2134 2159 1.731424 CGCTTCTTGATGCCTGCAAAG 60.731 52.381 0.00 0.00 0.00 2.77
2135 2160 1.403780 GCTTCTTGATGCCTGCAAAGG 60.404 52.381 0.00 0.00 0.00 3.11
2136 2161 1.891150 CTTCTTGATGCCTGCAAAGGT 59.109 47.619 0.00 0.00 0.00 3.50
2137 2162 1.538047 TCTTGATGCCTGCAAAGGTC 58.462 50.000 0.00 0.00 0.00 3.85
2138 2163 1.202915 TCTTGATGCCTGCAAAGGTCA 60.203 47.619 0.00 0.00 0.00 4.02
2139 2164 1.822990 CTTGATGCCTGCAAAGGTCAT 59.177 47.619 0.00 0.00 0.00 3.06
2140 2165 1.179152 TGATGCCTGCAAAGGTCATG 58.821 50.000 0.00 0.00 0.00 3.07
2141 2166 0.458669 GATGCCTGCAAAGGTCATGG 59.541 55.000 0.00 0.00 0.00 3.66
2142 2167 0.251922 ATGCCTGCAAAGGTCATGGT 60.252 50.000 0.00 0.00 0.00 3.55
2143 2168 1.180456 TGCCTGCAAAGGTCATGGTG 61.180 55.000 0.00 0.00 0.00 4.17
2144 2169 0.895100 GCCTGCAAAGGTCATGGTGA 60.895 55.000 0.00 0.00 0.00 4.02
2145 2170 1.171308 CCTGCAAAGGTCATGGTGAG 58.829 55.000 0.00 0.00 0.00 3.51
2146 2171 1.546323 CCTGCAAAGGTCATGGTGAGT 60.546 52.381 0.00 0.00 0.00 3.41
2147 2172 1.808945 CTGCAAAGGTCATGGTGAGTC 59.191 52.381 0.00 0.00 0.00 3.36
2148 2173 1.168714 GCAAAGGTCATGGTGAGTCC 58.831 55.000 0.00 0.00 0.00 3.85
2156 2181 4.034246 TGGTGAGTCCATCTCCGG 57.966 61.111 0.00 0.00 43.36 5.14
2157 2182 1.685765 TGGTGAGTCCATCTCCGGG 60.686 63.158 0.00 0.00 43.36 5.73
2158 2183 1.686110 GGTGAGTCCATCTCCGGGT 60.686 63.158 0.00 0.00 42.12 5.28
2159 2184 0.396695 GGTGAGTCCATCTCCGGGTA 60.397 60.000 0.00 0.00 42.12 3.69
2160 2185 1.481871 GTGAGTCCATCTCCGGGTAA 58.518 55.000 0.00 0.00 42.12 2.85
2161 2186 1.136500 GTGAGTCCATCTCCGGGTAAC 59.864 57.143 0.00 0.00 42.12 2.50
2162 2187 1.272816 TGAGTCCATCTCCGGGTAACA 60.273 52.381 0.00 0.00 42.12 2.41
2163 2188 1.136500 GAGTCCATCTCCGGGTAACAC 59.864 57.143 0.00 0.00 37.22 3.32
2164 2189 1.192428 GTCCATCTCCGGGTAACACT 58.808 55.000 0.00 0.00 39.74 3.55
2165 2190 1.134788 GTCCATCTCCGGGTAACACTG 60.135 57.143 0.00 0.00 39.74 3.66
2166 2191 1.191535 CCATCTCCGGGTAACACTGA 58.808 55.000 0.00 0.00 39.74 3.41
2167 2192 1.762957 CCATCTCCGGGTAACACTGAT 59.237 52.381 0.00 0.00 39.74 2.90
2168 2193 2.483714 CCATCTCCGGGTAACACTGATG 60.484 54.545 0.00 3.55 39.74 3.07
2169 2194 0.535335 TCTCCGGGTAACACTGATGC 59.465 55.000 0.00 0.00 39.74 3.91
2170 2195 0.462047 CTCCGGGTAACACTGATGCC 60.462 60.000 0.00 0.00 39.74 4.40
2171 2196 1.813753 CCGGGTAACACTGATGCCG 60.814 63.158 0.00 0.00 39.74 5.69
2172 2197 1.079405 CGGGTAACACTGATGCCGT 60.079 57.895 0.00 0.00 39.74 5.68
2173 2198 1.358725 CGGGTAACACTGATGCCGTG 61.359 60.000 0.00 0.00 38.32 4.94
2174 2199 0.036765 GGGTAACACTGATGCCGTGA 60.037 55.000 0.00 0.00 36.29 4.35
2175 2200 1.609580 GGGTAACACTGATGCCGTGAA 60.610 52.381 0.00 0.00 36.29 3.18
2176 2201 1.463444 GGTAACACTGATGCCGTGAAC 59.537 52.381 0.00 0.00 36.29 3.18
2177 2202 2.139917 GTAACACTGATGCCGTGAACA 58.860 47.619 0.00 0.00 36.29 3.18
2178 2203 1.674359 AACACTGATGCCGTGAACAA 58.326 45.000 0.00 0.00 36.29 2.83
2179 2204 1.229428 ACACTGATGCCGTGAACAAG 58.771 50.000 0.00 0.00 36.29 3.16
2180 2205 1.202639 ACACTGATGCCGTGAACAAGA 60.203 47.619 0.00 0.00 36.29 3.02
2181 2206 2.079158 CACTGATGCCGTGAACAAGAT 58.921 47.619 0.00 0.00 34.35 2.40
2182 2207 2.485426 CACTGATGCCGTGAACAAGATT 59.515 45.455 0.00 0.00 34.35 2.40
2183 2208 3.058016 CACTGATGCCGTGAACAAGATTT 60.058 43.478 0.00 0.00 34.35 2.17
2184 2209 4.154015 CACTGATGCCGTGAACAAGATTTA 59.846 41.667 0.00 0.00 34.35 1.40
2185 2210 4.943705 ACTGATGCCGTGAACAAGATTTAT 59.056 37.500 0.00 0.00 0.00 1.40
2186 2211 5.415701 ACTGATGCCGTGAACAAGATTTATT 59.584 36.000 0.00 0.00 0.00 1.40
2187 2212 5.879237 TGATGCCGTGAACAAGATTTATTC 58.121 37.500 0.00 0.00 0.00 1.75
2188 2213 4.695217 TGCCGTGAACAAGATTTATTCC 57.305 40.909 0.00 0.00 0.00 3.01
2189 2214 3.442273 TGCCGTGAACAAGATTTATTCCC 59.558 43.478 0.00 0.00 0.00 3.97
2190 2215 3.181490 GCCGTGAACAAGATTTATTCCCC 60.181 47.826 0.00 0.00 0.00 4.81
2191 2216 4.013728 CCGTGAACAAGATTTATTCCCCA 58.986 43.478 0.00 0.00 0.00 4.96
2192 2217 4.096382 CCGTGAACAAGATTTATTCCCCAG 59.904 45.833 0.00 0.00 0.00 4.45
2193 2218 4.096382 CGTGAACAAGATTTATTCCCCAGG 59.904 45.833 0.00 0.00 0.00 4.45
2194 2219 5.261216 GTGAACAAGATTTATTCCCCAGGA 58.739 41.667 0.00 0.00 0.00 3.86
2195 2220 5.714806 GTGAACAAGATTTATTCCCCAGGAA 59.285 40.000 0.00 0.00 46.39 3.36
2203 2228 3.051012 TTCCCCAGGAATATGCCCA 57.949 52.632 0.00 0.00 36.71 5.36
2204 2229 1.544764 TTCCCCAGGAATATGCCCAT 58.455 50.000 0.00 0.00 36.71 4.00
2205 2230 1.544764 TCCCCAGGAATATGCCCATT 58.455 50.000 0.00 0.00 0.00 3.16
2206 2231 1.865595 TCCCCAGGAATATGCCCATTT 59.134 47.619 0.00 0.00 0.00 2.32
2207 2232 1.972795 CCCCAGGAATATGCCCATTTG 59.027 52.381 0.00 0.00 0.00 2.32
2208 2233 1.972795 CCCAGGAATATGCCCATTTGG 59.027 52.381 0.00 0.00 37.09 3.28
2227 2252 4.587584 TGGGGACAACGTTTTATTTTCC 57.412 40.909 0.00 0.00 37.44 3.13
2228 2253 4.216708 TGGGGACAACGTTTTATTTTCCT 58.783 39.130 0.00 0.00 37.44 3.36
2229 2254 4.278919 TGGGGACAACGTTTTATTTTCCTC 59.721 41.667 0.00 0.00 37.44 3.71
2230 2255 4.521639 GGGGACAACGTTTTATTTTCCTCT 59.478 41.667 0.00 0.00 0.00 3.69
2231 2256 5.335426 GGGGACAACGTTTTATTTTCCTCTC 60.335 44.000 0.00 0.00 0.00 3.20
2232 2257 5.239963 GGGACAACGTTTTATTTTCCTCTCA 59.760 40.000 0.00 0.00 0.00 3.27
2233 2258 6.072119 GGGACAACGTTTTATTTTCCTCTCAT 60.072 38.462 0.00 0.00 0.00 2.90
2234 2259 7.021790 GGACAACGTTTTATTTTCCTCTCATC 58.978 38.462 0.00 0.00 0.00 2.92
2235 2260 7.094762 GGACAACGTTTTATTTTCCTCTCATCT 60.095 37.037 0.00 0.00 0.00 2.90
2236 2261 7.807680 ACAACGTTTTATTTTCCTCTCATCTC 58.192 34.615 0.00 0.00 0.00 2.75
2237 2262 6.986904 ACGTTTTATTTTCCTCTCATCTCC 57.013 37.500 0.00 0.00 0.00 3.71
2238 2263 6.472887 ACGTTTTATTTTCCTCTCATCTCCA 58.527 36.000 0.00 0.00 0.00 3.86
2239 2264 6.940298 ACGTTTTATTTTCCTCTCATCTCCAA 59.060 34.615 0.00 0.00 0.00 3.53
2240 2265 7.119846 ACGTTTTATTTTCCTCTCATCTCCAAG 59.880 37.037 0.00 0.00 0.00 3.61
2241 2266 7.334421 CGTTTTATTTTCCTCTCATCTCCAAGA 59.666 37.037 0.00 0.00 0.00 3.02
2242 2267 8.454894 GTTTTATTTTCCTCTCATCTCCAAGAC 58.545 37.037 0.00 0.00 0.00 3.01
2243 2268 3.876274 TTTCCTCTCATCTCCAAGACG 57.124 47.619 0.00 0.00 0.00 4.18
2244 2269 1.769026 TCCTCTCATCTCCAAGACGG 58.231 55.000 0.00 0.00 0.00 4.79
2245 2270 1.285078 TCCTCTCATCTCCAAGACGGA 59.715 52.381 0.00 0.00 43.61 4.69
2246 2271 1.407258 CCTCTCATCTCCAAGACGGAC 59.593 57.143 0.00 0.00 39.64 4.79
2247 2272 2.374184 CTCTCATCTCCAAGACGGACT 58.626 52.381 0.00 0.00 39.64 3.85
2248 2273 2.357637 CTCTCATCTCCAAGACGGACTC 59.642 54.545 0.00 0.00 39.64 3.36
2249 2274 2.025793 TCTCATCTCCAAGACGGACTCT 60.026 50.000 0.00 0.00 39.64 3.24
2250 2275 2.757868 CTCATCTCCAAGACGGACTCTT 59.242 50.000 0.00 0.00 39.64 2.85
2251 2276 3.948473 CTCATCTCCAAGACGGACTCTTA 59.052 47.826 0.00 0.00 39.64 2.10
2252 2277 4.341487 TCATCTCCAAGACGGACTCTTAA 58.659 43.478 0.00 0.00 39.64 1.85
2253 2278 4.770531 TCATCTCCAAGACGGACTCTTAAA 59.229 41.667 0.00 0.00 39.64 1.52
2254 2279 4.785511 TCTCCAAGACGGACTCTTAAAG 57.214 45.455 0.00 0.00 39.64 1.85
2255 2280 3.056749 TCTCCAAGACGGACTCTTAAAGC 60.057 47.826 0.00 0.00 39.64 3.51
2256 2281 2.631062 TCCAAGACGGACTCTTAAAGCA 59.369 45.455 0.00 0.00 39.64 3.91
2257 2282 3.260884 TCCAAGACGGACTCTTAAAGCAT 59.739 43.478 0.00 0.00 39.64 3.79
2258 2283 4.003648 CCAAGACGGACTCTTAAAGCATT 58.996 43.478 0.00 0.00 37.08 3.56
2259 2284 4.093556 CCAAGACGGACTCTTAAAGCATTC 59.906 45.833 0.00 0.00 37.08 2.67
2260 2285 3.512680 AGACGGACTCTTAAAGCATTCG 58.487 45.455 0.00 0.00 0.00 3.34
2261 2286 2.000447 ACGGACTCTTAAAGCATTCGC 59.000 47.619 0.00 0.00 38.99 4.70
2262 2287 1.999735 CGGACTCTTAAAGCATTCGCA 59.000 47.619 0.00 0.00 42.27 5.10
2263 2288 2.609459 CGGACTCTTAAAGCATTCGCAT 59.391 45.455 0.00 0.00 42.27 4.73
2264 2289 3.802139 CGGACTCTTAAAGCATTCGCATA 59.198 43.478 0.00 0.00 42.27 3.14
2265 2290 4.318121 CGGACTCTTAAAGCATTCGCATAC 60.318 45.833 0.00 0.00 42.27 2.39
2266 2291 4.318121 GGACTCTTAAAGCATTCGCATACG 60.318 45.833 0.00 0.00 42.27 3.06
2267 2292 3.001330 ACTCTTAAAGCATTCGCATACGC 59.999 43.478 0.00 0.00 42.27 4.42
2268 2293 3.194861 TCTTAAAGCATTCGCATACGCT 58.805 40.909 0.00 0.00 42.27 5.07
2269 2294 3.621268 TCTTAAAGCATTCGCATACGCTT 59.379 39.130 0.00 0.00 46.26 4.68
2270 2295 4.806775 TCTTAAAGCATTCGCATACGCTTA 59.193 37.500 0.00 0.00 43.64 3.09
2271 2296 3.319238 AAAGCATTCGCATACGCTTAC 57.681 42.857 0.00 0.00 43.64 2.34
2272 2297 0.852777 AGCATTCGCATACGCTTACG 59.147 50.000 0.00 0.00 43.30 3.18
2273 2298 0.718220 GCATTCGCATACGCTTACGC 60.718 55.000 0.00 0.00 39.91 4.42
2274 2299 0.574922 CATTCGCATACGCTTACGCA 59.425 50.000 0.00 0.00 45.53 5.24
2275 2300 0.852777 ATTCGCATACGCTTACGCAG 59.147 50.000 0.00 0.00 45.53 5.18
2276 2301 0.179158 TTCGCATACGCTTACGCAGA 60.179 50.000 0.00 0.00 45.53 4.26
2277 2302 0.030235 TCGCATACGCTTACGCAGAT 59.970 50.000 0.00 0.00 45.53 2.90
2278 2303 1.264826 TCGCATACGCTTACGCAGATA 59.735 47.619 0.00 0.00 45.53 1.98
2279 2304 1.382419 CGCATACGCTTACGCAGATAC 59.618 52.381 0.00 0.00 45.53 2.24
2280 2305 1.719780 GCATACGCTTACGCAGATACC 59.280 52.381 0.00 0.00 45.53 2.73
2281 2306 1.976728 CATACGCTTACGCAGATACCG 59.023 52.381 0.00 0.00 45.53 4.02
2282 2307 0.308684 TACGCTTACGCAGATACCGG 59.691 55.000 0.00 0.00 45.53 5.28
2283 2308 1.660575 CGCTTACGCAGATACCGGG 60.661 63.158 6.32 0.00 35.30 5.73
2284 2309 1.954651 GCTTACGCAGATACCGGGC 60.955 63.158 6.32 0.00 35.78 6.13
2300 2325 2.895372 GCGGTCCGCGGATCAATT 60.895 61.111 35.82 0.00 44.55 2.32
2301 2326 2.882366 GCGGTCCGCGGATCAATTC 61.882 63.158 35.82 20.00 44.55 2.17
2302 2327 2.585869 CGGTCCGCGGATCAATTCG 61.586 63.158 35.82 23.96 0.00 3.34
2303 2328 2.244651 GGTCCGCGGATCAATTCGG 61.245 63.158 33.13 0.00 42.96 4.30
2305 2330 1.745890 TCCGCGGATCAATTCGGAT 59.254 52.632 27.28 0.00 44.99 4.18
2306 2331 0.599991 TCCGCGGATCAATTCGGATG 60.600 55.000 27.28 0.00 44.99 3.51
2307 2332 0.880278 CCGCGGATCAATTCGGATGT 60.880 55.000 24.07 0.00 44.23 3.06
2308 2333 0.937304 CGCGGATCAATTCGGATGTT 59.063 50.000 0.00 0.00 0.00 2.71
2309 2334 1.070577 CGCGGATCAATTCGGATGTTC 60.071 52.381 0.00 0.00 0.00 3.18
2310 2335 1.070577 GCGGATCAATTCGGATGTTCG 60.071 52.381 0.00 0.00 0.00 3.95
2311 2336 2.469826 CGGATCAATTCGGATGTTCGA 58.530 47.619 0.00 0.00 37.38 3.71
2317 2342 2.849081 TTCGGATGTTCGAAAGCCC 58.151 52.632 0.00 0.00 44.70 5.19
2318 2343 1.017177 TTCGGATGTTCGAAAGCCCG 61.017 55.000 20.54 20.54 44.70 6.13
2319 2344 2.791927 GGATGTTCGAAAGCCCGC 59.208 61.111 0.00 0.00 0.00 6.13
2320 2345 2.038269 GGATGTTCGAAAGCCCGCA 61.038 57.895 0.00 0.00 0.00 5.69
2321 2346 1.582610 GGATGTTCGAAAGCCCGCAA 61.583 55.000 0.00 0.00 0.00 4.85
2322 2347 0.239879 GATGTTCGAAAGCCCGCAAA 59.760 50.000 0.00 0.00 0.00 3.68
2323 2348 0.039527 ATGTTCGAAAGCCCGCAAAC 60.040 50.000 0.00 0.00 0.00 2.93
2324 2349 1.371267 GTTCGAAAGCCCGCAAACC 60.371 57.895 0.00 0.00 0.00 3.27
2325 2350 2.899044 TTCGAAAGCCCGCAAACCG 61.899 57.895 0.00 0.00 0.00 4.44
2335 2360 3.687340 CGCAAACCGGACATAAACC 57.313 52.632 9.46 0.00 0.00 3.27
2336 2361 0.875728 CGCAAACCGGACATAAACCA 59.124 50.000 9.46 0.00 0.00 3.67
2337 2362 1.135803 CGCAAACCGGACATAAACCAG 60.136 52.381 9.46 0.00 0.00 4.00
2338 2363 2.156098 GCAAACCGGACATAAACCAGA 58.844 47.619 9.46 0.00 0.00 3.86
2339 2364 2.161609 GCAAACCGGACATAAACCAGAG 59.838 50.000 9.46 0.00 0.00 3.35
2340 2365 2.747446 CAAACCGGACATAAACCAGAGG 59.253 50.000 9.46 0.00 0.00 3.69
2341 2366 1.946984 ACCGGACATAAACCAGAGGA 58.053 50.000 9.46 0.00 0.00 3.71
2342 2367 2.478292 ACCGGACATAAACCAGAGGAT 58.522 47.619 9.46 0.00 0.00 3.24
2343 2368 2.844348 ACCGGACATAAACCAGAGGATT 59.156 45.455 9.46 0.00 0.00 3.01
2344 2369 3.265995 ACCGGACATAAACCAGAGGATTT 59.734 43.478 9.46 0.00 0.00 2.17
2345 2370 4.263771 ACCGGACATAAACCAGAGGATTTT 60.264 41.667 9.46 0.00 0.00 1.82
2346 2371 4.335594 CCGGACATAAACCAGAGGATTTTC 59.664 45.833 0.00 0.00 0.00 2.29
2347 2372 4.335594 CGGACATAAACCAGAGGATTTTCC 59.664 45.833 0.00 0.00 36.58 3.13
2348 2373 4.335594 GGACATAAACCAGAGGATTTTCCG 59.664 45.833 0.00 0.00 42.75 4.30
2349 2374 4.918588 ACATAAACCAGAGGATTTTCCGT 58.081 39.130 0.00 0.00 42.75 4.69
2350 2375 4.941873 ACATAAACCAGAGGATTTTCCGTC 59.058 41.667 0.00 0.00 42.75 4.79
2351 2376 3.790089 AAACCAGAGGATTTTCCGTCT 57.210 42.857 0.00 0.00 42.75 4.18
2352 2377 2.770164 ACCAGAGGATTTTCCGTCTG 57.230 50.000 12.36 12.36 42.75 3.51
2353 2378 2.029838 CCAGAGGATTTTCCGTCTGG 57.970 55.000 18.95 18.95 45.95 3.86
2355 2380 2.622436 CAGAGGATTTTCCGTCTGGAC 58.378 52.381 11.84 0.00 46.45 4.02
2356 2381 2.234908 CAGAGGATTTTCCGTCTGGACT 59.765 50.000 11.84 0.00 46.45 3.85
2357 2382 2.234908 AGAGGATTTTCCGTCTGGACTG 59.765 50.000 0.00 0.00 46.45 3.51
2358 2383 1.087501 GGATTTTCCGTCTGGACTGC 58.912 55.000 0.00 0.00 46.45 4.40
2359 2384 1.339151 GGATTTTCCGTCTGGACTGCT 60.339 52.381 0.00 0.00 46.45 4.24
2360 2385 1.734465 GATTTTCCGTCTGGACTGCTG 59.266 52.381 0.00 0.00 46.45 4.41
2361 2386 0.884704 TTTTCCGTCTGGACTGCTGC 60.885 55.000 0.00 0.00 46.45 5.25
2362 2387 2.731691 TTTCCGTCTGGACTGCTGCC 62.732 60.000 0.00 0.00 46.45 4.85
2363 2388 4.007644 CCGTCTGGACTGCTGCCA 62.008 66.667 0.00 6.59 37.49 4.92
2364 2389 2.740055 CGTCTGGACTGCTGCCAC 60.740 66.667 0.00 0.00 0.00 5.01
2365 2390 2.740055 GTCTGGACTGCTGCCACG 60.740 66.667 0.00 0.00 0.00 4.94
2366 2391 3.233980 TCTGGACTGCTGCCACGT 61.234 61.111 0.00 0.00 0.00 4.49
2367 2392 1.906333 TCTGGACTGCTGCCACGTA 60.906 57.895 0.00 0.00 0.00 3.57
2368 2393 1.738099 CTGGACTGCTGCCACGTAC 60.738 63.158 0.00 0.00 0.00 3.67
2369 2394 2.809601 GGACTGCTGCCACGTACG 60.810 66.667 15.01 15.01 0.00 3.67
2370 2395 3.479269 GACTGCTGCCACGTACGC 61.479 66.667 16.72 0.00 0.00 4.42
2371 2396 4.293648 ACTGCTGCCACGTACGCA 62.294 61.111 16.72 8.97 34.41 5.24
2372 2397 2.815211 CTGCTGCCACGTACGCAT 60.815 61.111 16.72 0.00 35.25 4.73
2373 2398 2.802667 CTGCTGCCACGTACGCATC 61.803 63.158 16.72 6.79 35.25 3.91
2374 2399 3.564027 GCTGCCACGTACGCATCC 61.564 66.667 16.72 1.92 35.25 3.51
2375 2400 3.254654 CTGCCACGTACGCATCCG 61.255 66.667 16.72 0.00 35.25 4.18
2376 2401 3.693382 CTGCCACGTACGCATCCGA 62.693 63.158 16.72 0.00 35.25 4.55
2377 2402 3.252484 GCCACGTACGCATCCGAC 61.252 66.667 16.72 0.00 38.29 4.79
2378 2403 2.179767 CCACGTACGCATCCGACA 59.820 61.111 16.72 0.00 38.29 4.35
2379 2404 2.156446 CCACGTACGCATCCGACAC 61.156 63.158 16.72 0.00 38.29 3.67
2380 2405 2.156446 CACGTACGCATCCGACACC 61.156 63.158 16.72 0.00 38.29 4.16
2381 2406 2.947621 CGTACGCATCCGACACCG 60.948 66.667 0.52 0.00 38.29 4.94
2382 2407 2.180017 GTACGCATCCGACACCGT 59.820 61.111 0.00 0.00 38.29 4.83
2383 2408 2.156446 GTACGCATCCGACACCGTG 61.156 63.158 0.00 0.00 38.29 4.94
2384 2409 3.345209 TACGCATCCGACACCGTGG 62.345 63.158 3.03 0.00 38.29 4.94
2385 2410 4.429212 CGCATCCGACACCGTGGA 62.429 66.667 3.03 0.00 38.95 4.02
2386 2411 2.813908 GCATCCGACACCGTGGAC 60.814 66.667 3.03 0.00 37.02 4.02
2387 2412 2.654289 CATCCGACACCGTGGACA 59.346 61.111 3.03 0.00 37.02 4.02
2388 2413 1.736645 CATCCGACACCGTGGACAC 60.737 63.158 3.03 0.00 37.02 3.67
2389 2414 2.204461 ATCCGACACCGTGGACACA 61.204 57.895 3.03 0.00 37.02 3.72
2390 2415 2.430382 ATCCGACACCGTGGACACAC 62.430 60.000 3.03 0.00 44.23 3.82
2391 2416 2.415843 CGACACCGTGGACACACT 59.584 61.111 3.03 0.00 45.50 3.55
2392 2417 1.660575 CGACACCGTGGACACACTC 60.661 63.158 3.03 0.00 45.50 3.51
2393 2418 1.440060 GACACCGTGGACACACTCA 59.560 57.895 3.03 0.00 45.50 3.41
2394 2419 0.179094 GACACCGTGGACACACTCAA 60.179 55.000 3.03 0.00 45.50 3.02
2395 2420 0.250793 ACACCGTGGACACACTCAAA 59.749 50.000 3.03 0.00 45.50 2.69
2396 2421 1.339247 ACACCGTGGACACACTCAAAA 60.339 47.619 3.03 0.00 45.50 2.44
2397 2422 1.946768 CACCGTGGACACACTCAAAAT 59.053 47.619 3.12 0.00 45.50 1.82
2398 2423 2.032030 CACCGTGGACACACTCAAAATC 60.032 50.000 3.12 0.00 45.50 2.17
2399 2424 2.158813 ACCGTGGACACACTCAAAATCT 60.159 45.455 3.12 0.00 45.50 2.40
2400 2425 2.480419 CCGTGGACACACTCAAAATCTC 59.520 50.000 3.12 0.00 45.50 2.75
2401 2426 3.393800 CGTGGACACACTCAAAATCTCT 58.606 45.455 3.12 0.00 45.50 3.10
2402 2427 3.430218 CGTGGACACACTCAAAATCTCTC 59.570 47.826 3.12 0.00 45.50 3.20
2403 2428 3.748568 GTGGACACACTCAAAATCTCTCC 59.251 47.826 0.00 0.00 44.29 3.71
2404 2429 3.244561 TGGACACACTCAAAATCTCTCCC 60.245 47.826 0.00 0.00 0.00 4.30
2405 2430 2.996621 GACACACTCAAAATCTCTCCCG 59.003 50.000 0.00 0.00 0.00 5.14
2406 2431 1.734465 CACACTCAAAATCTCTCCCGC 59.266 52.381 0.00 0.00 0.00 6.13
2407 2432 1.347707 ACACTCAAAATCTCTCCCGCA 59.652 47.619 0.00 0.00 0.00 5.69
2408 2433 1.734465 CACTCAAAATCTCTCCCGCAC 59.266 52.381 0.00 0.00 0.00 5.34
2409 2434 1.339151 ACTCAAAATCTCTCCCGCACC 60.339 52.381 0.00 0.00 0.00 5.01
2410 2435 0.035439 TCAAAATCTCTCCCGCACCC 60.035 55.000 0.00 0.00 0.00 4.61
2411 2436 0.035056 CAAAATCTCTCCCGCACCCT 60.035 55.000 0.00 0.00 0.00 4.34
2412 2437 0.253327 AAAATCTCTCCCGCACCCTC 59.747 55.000 0.00 0.00 0.00 4.30
2413 2438 0.618968 AAATCTCTCCCGCACCCTCT 60.619 55.000 0.00 0.00 0.00 3.69
2414 2439 1.045911 AATCTCTCCCGCACCCTCTC 61.046 60.000 0.00 0.00 0.00 3.20
2415 2440 2.937959 ATCTCTCCCGCACCCTCTCC 62.938 65.000 0.00 0.00 0.00 3.71
2416 2441 3.965026 CTCTCCCGCACCCTCTCCA 62.965 68.421 0.00 0.00 0.00 3.86
2417 2442 3.775654 CTCCCGCACCCTCTCCAC 61.776 72.222 0.00 0.00 0.00 4.02
2422 2447 4.373116 GCACCCTCTCCACGCGAA 62.373 66.667 15.93 0.00 0.00 4.70
2423 2448 2.125912 CACCCTCTCCACGCGAAG 60.126 66.667 15.93 7.40 0.00 3.79
2436 2461 3.252964 CGAAGCGATTGCCACACA 58.747 55.556 0.00 0.00 44.31 3.72
2437 2462 1.796151 CGAAGCGATTGCCACACAT 59.204 52.632 0.00 0.00 44.31 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.418057 TTTTCAATGCTTACCAATTGTCCT 57.582 33.333 4.43 0.00 0.00 3.85
57 58 2.484264 CCTTCGTGTTTGGGCTAAAGAG 59.516 50.000 0.00 0.00 0.00 2.85
86 87 4.394920 AGCGTTATACACAATTGTTCCCTG 59.605 41.667 8.77 0.00 37.15 4.45
160 161 5.995282 CAGTCTGTTTTATCTACACCCACAA 59.005 40.000 0.00 0.00 0.00 3.33
212 213 9.635404 TTTTCCTTCCAGACACTAATTTTCTTA 57.365 29.630 0.00 0.00 0.00 2.10
240 241 2.158667 CCTTTACCCCGGCAGACAATAT 60.159 50.000 0.00 0.00 0.00 1.28
256 257 2.171448 GCCTTGAGCTGGATCTCCTTTA 59.829 50.000 0.00 0.00 38.99 1.85
332 335 5.452302 CGCGTCAATGATTCCTTTACAAATC 59.548 40.000 0.00 0.00 33.42 2.17
334 337 4.452795 TCGCGTCAATGATTCCTTTACAAA 59.547 37.500 5.77 0.00 0.00 2.83
552 556 7.482169 AATCGCCATCAGGATAGTATTTAGA 57.518 36.000 0.00 0.00 36.89 2.10
607 611 5.337169 GCCATAATACTTTGCCAGGTGAAAA 60.337 40.000 0.00 0.00 0.00 2.29
710 714 4.746535 TCTAGCGTCACAATTTGGGATA 57.253 40.909 4.34 0.00 29.44 2.59
725 729 3.131396 AGGTGTCACAACTTTTCTAGCG 58.869 45.455 5.12 0.00 0.00 4.26
726 730 4.691216 CCTAGGTGTCACAACTTTTCTAGC 59.309 45.833 0.00 0.00 31.86 3.42
751 757 3.682696 CCTTAGTTAACAGTTGTCCCCC 58.317 50.000 8.61 0.00 0.00 5.40
752 758 3.079578 GCCTTAGTTAACAGTTGTCCCC 58.920 50.000 8.61 0.00 0.00 4.81
773 781 6.262944 TGAAATAGGATCAATCAAATCACCCG 59.737 38.462 0.00 0.00 0.00 5.28
892 900 8.725405 TTCGTATAACTCCAAGCAATGAAATA 57.275 30.769 0.00 0.00 0.00 1.40
1056 1064 8.442384 CGCCATATAAAAATTTTGACTTTTGCT 58.558 29.630 3.73 0.00 0.00 3.91
1120 1129 5.523916 GCGTGACCTTCATATGTCTATTTGT 59.476 40.000 1.90 0.00 32.67 2.83
1293 1302 4.579340 TCTGGCAGAAGTAGTAGGTATTCG 59.421 45.833 16.28 0.00 0.00 3.34
1425 1434 5.163519 CCCCATCGAAATCTAAAGTGCATTT 60.164 40.000 0.00 0.00 34.72 2.32
1658 1673 2.079158 CTGCCATCAACACATCTTCGT 58.921 47.619 0.00 0.00 0.00 3.85
1711 1726 0.402504 TTACATCCCGCCCTTTGTGT 59.597 50.000 0.00 0.00 0.00 3.72
1713 1728 2.099405 CAATTACATCCCGCCCTTTGT 58.901 47.619 0.00 0.00 0.00 2.83
1755 1770 8.089625 TCTTCATGGTATCAATCACCTTTAGA 57.910 34.615 0.00 0.00 36.96 2.10
1758 1773 6.094048 CGTTCTTCATGGTATCAATCACCTTT 59.906 38.462 0.00 0.00 36.96 3.11
1759 1774 5.586243 CGTTCTTCATGGTATCAATCACCTT 59.414 40.000 0.00 0.00 36.96 3.50
1801 1825 5.472320 TGAAAACAGTCGTCGAAAATTGA 57.528 34.783 0.00 0.00 0.00 2.57
1869 1893 7.135467 GCTTATGAGCTACTTTATTTGCTTCC 58.865 38.462 1.49 0.00 45.65 3.46
2026 2051 3.410631 TTGGACCTTGTTATCAAGCGA 57.589 42.857 7.87 0.00 46.74 4.93
2027 2052 3.502211 AGTTTGGACCTTGTTATCAAGCG 59.498 43.478 7.87 4.77 46.74 4.68
2028 2053 4.518970 TCAGTTTGGACCTTGTTATCAAGC 59.481 41.667 7.87 0.00 46.74 4.01
2030 2055 5.070001 CCTCAGTTTGGACCTTGTTATCAA 58.930 41.667 0.00 0.00 0.00 2.57
2031 2056 4.506625 CCCTCAGTTTGGACCTTGTTATCA 60.507 45.833 0.00 0.00 0.00 2.15
2032 2057 4.010349 CCCTCAGTTTGGACCTTGTTATC 58.990 47.826 0.00 0.00 0.00 1.75
2033 2058 3.245264 CCCCTCAGTTTGGACCTTGTTAT 60.245 47.826 0.00 0.00 0.00 1.89
2034 2059 2.107552 CCCCTCAGTTTGGACCTTGTTA 59.892 50.000 0.00 0.00 0.00 2.41
2035 2060 1.133482 CCCCTCAGTTTGGACCTTGTT 60.133 52.381 0.00 0.00 0.00 2.83
2036 2061 0.478507 CCCCTCAGTTTGGACCTTGT 59.521 55.000 0.00 0.00 0.00 3.16
2037 2062 0.478507 ACCCCTCAGTTTGGACCTTG 59.521 55.000 0.00 0.00 0.00 3.61
2038 2063 0.478507 CACCCCTCAGTTTGGACCTT 59.521 55.000 0.00 0.00 0.00 3.50
2039 2064 0.697854 ACACCCCTCAGTTTGGACCT 60.698 55.000 0.00 0.00 0.00 3.85
2040 2065 0.537371 CACACCCCTCAGTTTGGACC 60.537 60.000 0.00 0.00 0.00 4.46
2041 2066 0.537371 CCACACCCCTCAGTTTGGAC 60.537 60.000 0.00 0.00 39.52 4.02
2042 2067 1.843421 CCACACCCCTCAGTTTGGA 59.157 57.895 0.00 0.00 39.52 3.53
2043 2068 1.903404 GCCACACCCCTCAGTTTGG 60.903 63.158 0.00 0.00 40.02 3.28
2044 2069 2.260869 CGCCACACCCCTCAGTTTG 61.261 63.158 0.00 0.00 0.00 2.93
2045 2070 2.113139 CGCCACACCCCTCAGTTT 59.887 61.111 0.00 0.00 0.00 2.66
2046 2071 2.847234 TCGCCACACCCCTCAGTT 60.847 61.111 0.00 0.00 0.00 3.16
2047 2072 3.314331 CTCGCCACACCCCTCAGT 61.314 66.667 0.00 0.00 0.00 3.41
2048 2073 3.302347 GACTCGCCACACCCCTCAG 62.302 68.421 0.00 0.00 0.00 3.35
2049 2074 3.311110 GACTCGCCACACCCCTCA 61.311 66.667 0.00 0.00 0.00 3.86
2050 2075 2.113243 AAAGACTCGCCACACCCCTC 62.113 60.000 0.00 0.00 0.00 4.30
2051 2076 0.834687 TAAAGACTCGCCACACCCCT 60.835 55.000 0.00 0.00 0.00 4.79
2052 2077 0.391263 CTAAAGACTCGCCACACCCC 60.391 60.000 0.00 0.00 0.00 4.95
2053 2078 0.391263 CCTAAAGACTCGCCACACCC 60.391 60.000 0.00 0.00 0.00 4.61
2054 2079 0.606604 TCCTAAAGACTCGCCACACC 59.393 55.000 0.00 0.00 0.00 4.16
2055 2080 1.997669 CTCCTAAAGACTCGCCACAC 58.002 55.000 0.00 0.00 0.00 3.82
2056 2081 0.246635 GCTCCTAAAGACTCGCCACA 59.753 55.000 0.00 0.00 0.00 4.17
2057 2082 0.246635 TGCTCCTAAAGACTCGCCAC 59.753 55.000 0.00 0.00 0.00 5.01
2058 2083 1.137086 GATGCTCCTAAAGACTCGCCA 59.863 52.381 0.00 0.00 0.00 5.69
2059 2084 1.410882 AGATGCTCCTAAAGACTCGCC 59.589 52.381 0.00 0.00 0.00 5.54
2060 2085 2.360801 AGAGATGCTCCTAAAGACTCGC 59.639 50.000 0.00 0.00 0.00 5.03
2061 2086 4.819630 AGTAGAGATGCTCCTAAAGACTCG 59.180 45.833 0.00 0.00 0.00 4.18
2062 2087 6.062095 AGAGTAGAGATGCTCCTAAAGACTC 58.938 44.000 0.00 0.00 32.47 3.36
2063 2088 6.013554 AGAGTAGAGATGCTCCTAAAGACT 57.986 41.667 0.00 0.00 32.47 3.24
2064 2089 5.825679 TGAGAGTAGAGATGCTCCTAAAGAC 59.174 44.000 0.00 0.00 32.47 3.01
2065 2090 6.007485 TGAGAGTAGAGATGCTCCTAAAGA 57.993 41.667 0.00 0.00 32.47 2.52
2066 2091 6.239008 CCTTGAGAGTAGAGATGCTCCTAAAG 60.239 46.154 0.00 0.00 32.47 1.85
2067 2092 5.596361 CCTTGAGAGTAGAGATGCTCCTAAA 59.404 44.000 0.00 0.00 32.47 1.85
2068 2093 5.136828 CCTTGAGAGTAGAGATGCTCCTAA 58.863 45.833 0.00 0.00 32.47 2.69
2069 2094 4.724399 CCTTGAGAGTAGAGATGCTCCTA 58.276 47.826 0.00 0.00 32.47 2.94
2070 2095 3.565307 CCTTGAGAGTAGAGATGCTCCT 58.435 50.000 0.00 0.00 32.47 3.69
2071 2096 2.035832 GCCTTGAGAGTAGAGATGCTCC 59.964 54.545 0.00 0.00 32.47 4.70
2072 2097 2.692557 TGCCTTGAGAGTAGAGATGCTC 59.307 50.000 0.00 0.00 0.00 4.26
2073 2098 2.694628 CTGCCTTGAGAGTAGAGATGCT 59.305 50.000 0.00 0.00 0.00 3.79
2074 2099 2.802774 GCTGCCTTGAGAGTAGAGATGC 60.803 54.545 0.00 0.00 0.00 3.91
2075 2100 2.429971 TGCTGCCTTGAGAGTAGAGATG 59.570 50.000 0.00 0.00 0.00 2.90
2076 2101 2.694628 CTGCTGCCTTGAGAGTAGAGAT 59.305 50.000 0.00 0.00 0.00 2.75
2077 2102 2.098614 CTGCTGCCTTGAGAGTAGAGA 58.901 52.381 0.00 0.00 0.00 3.10
2078 2103 1.471327 GCTGCTGCCTTGAGAGTAGAG 60.471 57.143 3.85 0.00 0.00 2.43
2079 2104 0.534412 GCTGCTGCCTTGAGAGTAGA 59.466 55.000 3.85 0.00 0.00 2.59
2080 2105 0.805322 CGCTGCTGCCTTGAGAGTAG 60.805 60.000 10.24 0.00 35.36 2.57
2081 2106 1.216444 CGCTGCTGCCTTGAGAGTA 59.784 57.895 10.24 0.00 35.36 2.59
2082 2107 2.047465 CGCTGCTGCCTTGAGAGT 60.047 61.111 10.24 0.00 35.36 3.24
2083 2108 1.375140 TTCGCTGCTGCCTTGAGAG 60.375 57.895 10.24 0.00 35.36 3.20
2084 2109 1.669115 GTTCGCTGCTGCCTTGAGA 60.669 57.895 10.24 0.00 35.36 3.27
2085 2110 1.303799 ATGTTCGCTGCTGCCTTGAG 61.304 55.000 10.24 0.00 35.36 3.02
2086 2111 0.036483 TATGTTCGCTGCTGCCTTGA 60.036 50.000 10.24 0.00 35.36 3.02
2087 2112 0.376152 CTATGTTCGCTGCTGCCTTG 59.624 55.000 10.24 0.00 35.36 3.61
2088 2113 1.372087 GCTATGTTCGCTGCTGCCTT 61.372 55.000 10.24 0.00 35.36 4.35
2089 2114 1.817099 GCTATGTTCGCTGCTGCCT 60.817 57.895 10.24 0.00 35.36 4.75
2090 2115 1.372087 AAGCTATGTTCGCTGCTGCC 61.372 55.000 10.24 0.00 37.87 4.85
2091 2116 1.290203 TAAGCTATGTTCGCTGCTGC 58.710 50.000 5.34 5.34 37.87 5.25
2092 2117 4.521943 GAATTAAGCTATGTTCGCTGCTG 58.478 43.478 0.00 0.00 37.87 4.41
2093 2118 3.246226 CGAATTAAGCTATGTTCGCTGCT 59.754 43.478 12.35 0.00 37.87 4.24
2094 2119 3.535860 CGAATTAAGCTATGTTCGCTGC 58.464 45.455 12.35 0.00 37.87 5.25
2098 2123 5.643339 AGAAGCGAATTAAGCTATGTTCG 57.357 39.130 17.72 17.72 45.31 3.95
2099 2124 7.005062 TCAAGAAGCGAATTAAGCTATGTTC 57.995 36.000 8.14 3.34 45.31 3.18
2100 2125 6.985188 TCAAGAAGCGAATTAAGCTATGTT 57.015 33.333 8.14 1.22 45.31 2.71
2101 2126 6.512415 GCATCAAGAAGCGAATTAAGCTATGT 60.512 38.462 8.14 0.00 45.31 2.29
2102 2127 5.850128 GCATCAAGAAGCGAATTAAGCTATG 59.150 40.000 8.14 8.75 45.31 2.23
2103 2128 5.049129 GGCATCAAGAAGCGAATTAAGCTAT 60.049 40.000 8.14 0.00 45.31 2.97
2104 2129 4.273480 GGCATCAAGAAGCGAATTAAGCTA 59.727 41.667 8.14 0.00 45.31 3.32
2106 2131 3.065925 AGGCATCAAGAAGCGAATTAAGC 59.934 43.478 0.00 0.00 0.00 3.09
2107 2132 4.595116 CAGGCATCAAGAAGCGAATTAAG 58.405 43.478 0.00 0.00 0.00 1.85
2108 2133 3.181497 GCAGGCATCAAGAAGCGAATTAA 60.181 43.478 0.00 0.00 0.00 1.40
2109 2134 2.355756 GCAGGCATCAAGAAGCGAATTA 59.644 45.455 0.00 0.00 0.00 1.40
2110 2135 1.133790 GCAGGCATCAAGAAGCGAATT 59.866 47.619 0.00 0.00 0.00 2.17
2111 2136 0.737219 GCAGGCATCAAGAAGCGAAT 59.263 50.000 0.00 0.00 0.00 3.34
2112 2137 0.606130 TGCAGGCATCAAGAAGCGAA 60.606 50.000 0.00 0.00 0.00 4.70
2113 2138 0.606130 TTGCAGGCATCAAGAAGCGA 60.606 50.000 0.00 0.00 0.00 4.93
2114 2139 0.241749 TTTGCAGGCATCAAGAAGCG 59.758 50.000 0.00 0.00 0.00 4.68
2115 2140 1.403780 CCTTTGCAGGCATCAAGAAGC 60.404 52.381 7.16 0.00 31.53 3.86
2116 2141 1.891150 ACCTTTGCAGGCATCAAGAAG 59.109 47.619 7.16 2.31 45.56 2.85
2117 2142 1.888512 GACCTTTGCAGGCATCAAGAA 59.111 47.619 7.16 0.00 45.56 2.52
2118 2143 1.202915 TGACCTTTGCAGGCATCAAGA 60.203 47.619 7.16 0.00 45.56 3.02
2119 2144 1.250328 TGACCTTTGCAGGCATCAAG 58.750 50.000 0.00 0.00 45.56 3.02
2120 2145 1.546923 CATGACCTTTGCAGGCATCAA 59.453 47.619 0.00 0.00 45.56 2.57
2121 2146 1.179152 CATGACCTTTGCAGGCATCA 58.821 50.000 0.00 0.00 45.56 3.07
2122 2147 0.458669 CCATGACCTTTGCAGGCATC 59.541 55.000 0.00 0.00 45.56 3.91
2123 2148 0.251922 ACCATGACCTTTGCAGGCAT 60.252 50.000 0.00 0.00 45.56 4.40
2124 2149 1.153524 ACCATGACCTTTGCAGGCA 59.846 52.632 0.00 0.00 45.56 4.75
2125 2150 0.895100 TCACCATGACCTTTGCAGGC 60.895 55.000 0.00 0.00 45.56 4.85
2127 2152 1.808945 GACTCACCATGACCTTTGCAG 59.191 52.381 0.00 0.00 0.00 4.41
2128 2153 1.545428 GGACTCACCATGACCTTTGCA 60.545 52.381 0.00 0.00 38.79 4.08
2129 2154 1.168714 GGACTCACCATGACCTTTGC 58.831 55.000 0.00 0.00 38.79 3.68
2130 2155 2.566833 TGGACTCACCATGACCTTTG 57.433 50.000 0.00 0.00 44.64 2.77
2140 2165 0.396695 TACCCGGAGATGGACTCACC 60.397 60.000 0.73 0.00 46.54 4.02
2141 2166 1.136500 GTTACCCGGAGATGGACTCAC 59.864 57.143 0.73 0.00 46.54 3.51
2142 2167 1.272816 TGTTACCCGGAGATGGACTCA 60.273 52.381 0.73 0.00 46.54 3.41
2143 2168 1.136500 GTGTTACCCGGAGATGGACTC 59.864 57.143 0.73 0.00 44.24 3.36
2144 2169 1.192428 GTGTTACCCGGAGATGGACT 58.808 55.000 0.73 0.00 0.00 3.85
2145 2170 1.134788 CAGTGTTACCCGGAGATGGAC 60.135 57.143 0.73 0.00 0.00 4.02
2146 2171 1.191535 CAGTGTTACCCGGAGATGGA 58.808 55.000 0.73 0.00 0.00 3.41
2147 2172 1.191535 TCAGTGTTACCCGGAGATGG 58.808 55.000 0.73 0.00 0.00 3.51
2148 2173 2.826428 CATCAGTGTTACCCGGAGATG 58.174 52.381 0.73 0.00 0.00 2.90
2149 2174 1.139058 GCATCAGTGTTACCCGGAGAT 59.861 52.381 0.73 0.00 0.00 2.75
2150 2175 0.535335 GCATCAGTGTTACCCGGAGA 59.465 55.000 0.73 0.00 0.00 3.71
2151 2176 0.462047 GGCATCAGTGTTACCCGGAG 60.462 60.000 0.73 0.00 0.00 4.63
2152 2177 1.600107 GGCATCAGTGTTACCCGGA 59.400 57.895 0.73 0.00 0.00 5.14
2153 2178 1.813753 CGGCATCAGTGTTACCCGG 60.814 63.158 0.00 0.00 32.58 5.73
2154 2179 1.079405 ACGGCATCAGTGTTACCCG 60.079 57.895 10.91 10.91 41.31 5.28
2155 2180 0.036765 TCACGGCATCAGTGTTACCC 60.037 55.000 0.00 0.00 40.28 3.69
2156 2181 1.463444 GTTCACGGCATCAGTGTTACC 59.537 52.381 0.00 0.00 40.28 2.85
2157 2182 2.139917 TGTTCACGGCATCAGTGTTAC 58.860 47.619 0.00 0.00 40.28 2.50
2158 2183 2.535012 TGTTCACGGCATCAGTGTTA 57.465 45.000 0.00 0.00 40.28 2.41
2159 2184 1.603802 CTTGTTCACGGCATCAGTGTT 59.396 47.619 0.00 0.00 40.28 3.32
2160 2185 1.202639 TCTTGTTCACGGCATCAGTGT 60.203 47.619 0.00 0.00 40.28 3.55
2161 2186 1.511850 TCTTGTTCACGGCATCAGTG 58.488 50.000 0.00 0.00 40.71 3.66
2162 2187 2.479566 ATCTTGTTCACGGCATCAGT 57.520 45.000 0.00 0.00 0.00 3.41
2163 2188 3.837213 AAATCTTGTTCACGGCATCAG 57.163 42.857 0.00 0.00 0.00 2.90
2164 2189 5.163663 GGAATAAATCTTGTTCACGGCATCA 60.164 40.000 0.00 0.00 33.05 3.07
2165 2190 5.273944 GGAATAAATCTTGTTCACGGCATC 58.726 41.667 0.00 0.00 33.05 3.91
2166 2191 4.097892 GGGAATAAATCTTGTTCACGGCAT 59.902 41.667 0.00 0.00 33.05 4.40
2167 2192 3.442273 GGGAATAAATCTTGTTCACGGCA 59.558 43.478 0.00 0.00 33.05 5.69
2168 2193 3.181490 GGGGAATAAATCTTGTTCACGGC 60.181 47.826 0.00 0.00 35.30 5.68
2169 2194 4.013728 TGGGGAATAAATCTTGTTCACGG 58.986 43.478 0.00 0.00 35.30 4.94
2170 2195 4.096382 CCTGGGGAATAAATCTTGTTCACG 59.904 45.833 0.00 0.00 35.30 4.35
2171 2196 5.261216 TCCTGGGGAATAAATCTTGTTCAC 58.739 41.667 0.00 0.00 33.91 3.18
2172 2197 5.528600 TCCTGGGGAATAAATCTTGTTCA 57.471 39.130 0.00 0.00 33.05 3.18
2185 2210 1.544764 ATGGGCATATTCCTGGGGAA 58.455 50.000 1.29 1.29 46.39 3.97
2186 2211 1.544764 AATGGGCATATTCCTGGGGA 58.455 50.000 0.00 0.00 0.00 4.81
2187 2212 1.972795 CAAATGGGCATATTCCTGGGG 59.027 52.381 0.00 0.00 0.00 4.96
2188 2213 1.972795 CCAAATGGGCATATTCCTGGG 59.027 52.381 0.00 0.00 0.00 4.45
2201 2226 2.900716 AAAACGTTGTCCCCAAATGG 57.099 45.000 0.00 0.00 30.94 3.16
2202 2227 6.073494 GGAAAATAAAACGTTGTCCCCAAATG 60.073 38.462 0.00 0.00 30.94 2.32
2203 2228 5.992829 GGAAAATAAAACGTTGTCCCCAAAT 59.007 36.000 0.00 0.00 30.94 2.32
2204 2229 5.128991 AGGAAAATAAAACGTTGTCCCCAAA 59.871 36.000 0.00 0.00 30.94 3.28
2205 2230 4.650131 AGGAAAATAAAACGTTGTCCCCAA 59.350 37.500 0.00 0.00 0.00 4.12
2206 2231 4.216708 AGGAAAATAAAACGTTGTCCCCA 58.783 39.130 0.00 0.00 0.00 4.96
2207 2232 4.521639 AGAGGAAAATAAAACGTTGTCCCC 59.478 41.667 0.00 0.00 0.00 4.81
2208 2233 5.239963 TGAGAGGAAAATAAAACGTTGTCCC 59.760 40.000 0.00 0.00 0.00 4.46
2209 2234 6.308371 TGAGAGGAAAATAAAACGTTGTCC 57.692 37.500 0.00 2.57 0.00 4.02
2210 2235 7.807680 AGATGAGAGGAAAATAAAACGTTGTC 58.192 34.615 0.00 0.00 0.00 3.18
2211 2236 7.094762 GGAGATGAGAGGAAAATAAAACGTTGT 60.095 37.037 0.00 0.00 0.00 3.32
2212 2237 7.094805 TGGAGATGAGAGGAAAATAAAACGTTG 60.095 37.037 0.00 0.00 0.00 4.10
2213 2238 6.940298 TGGAGATGAGAGGAAAATAAAACGTT 59.060 34.615 0.00 0.00 0.00 3.99
2214 2239 6.472887 TGGAGATGAGAGGAAAATAAAACGT 58.527 36.000 0.00 0.00 0.00 3.99
2215 2240 6.985188 TGGAGATGAGAGGAAAATAAAACG 57.015 37.500 0.00 0.00 0.00 3.60
2216 2241 8.454894 GTCTTGGAGATGAGAGGAAAATAAAAC 58.545 37.037 0.00 0.00 0.00 2.43
2217 2242 7.334421 CGTCTTGGAGATGAGAGGAAAATAAAA 59.666 37.037 0.00 0.00 33.07 1.52
2218 2243 6.818644 CGTCTTGGAGATGAGAGGAAAATAAA 59.181 38.462 0.00 0.00 33.07 1.40
2219 2244 6.341316 CGTCTTGGAGATGAGAGGAAAATAA 58.659 40.000 0.00 0.00 33.07 1.40
2220 2245 5.163405 CCGTCTTGGAGATGAGAGGAAAATA 60.163 44.000 0.00 0.00 42.00 1.40
2221 2246 4.383552 CCGTCTTGGAGATGAGAGGAAAAT 60.384 45.833 0.00 0.00 42.00 1.82
2222 2247 3.055819 CCGTCTTGGAGATGAGAGGAAAA 60.056 47.826 0.00 0.00 42.00 2.29
2223 2248 2.497675 CCGTCTTGGAGATGAGAGGAAA 59.502 50.000 0.00 0.00 42.00 3.13
2224 2249 2.103373 CCGTCTTGGAGATGAGAGGAA 58.897 52.381 0.00 0.00 42.00 3.36
2225 2250 1.285078 TCCGTCTTGGAGATGAGAGGA 59.715 52.381 0.00 0.00 43.74 3.71
2226 2251 1.769026 TCCGTCTTGGAGATGAGAGG 58.231 55.000 0.00 0.00 43.74 3.69
2235 2260 2.631062 TGCTTTAAGAGTCCGTCTTGGA 59.369 45.455 0.00 0.00 45.71 3.53
2236 2261 3.040147 TGCTTTAAGAGTCCGTCTTGG 57.960 47.619 0.00 0.00 45.71 3.61
2237 2262 4.201628 CGAATGCTTTAAGAGTCCGTCTTG 60.202 45.833 0.00 0.00 45.71 3.02
2238 2263 5.673418 GCGAATGCTTTAAGAGTCCGTCTT 61.673 45.833 0.00 0.00 42.64 3.01
2239 2264 3.512680 CGAATGCTTTAAGAGTCCGTCT 58.487 45.455 0.00 0.00 36.94 4.18
2240 2265 2.029365 GCGAATGCTTTAAGAGTCCGTC 59.971 50.000 0.00 0.00 38.39 4.79
2241 2266 2.000447 GCGAATGCTTTAAGAGTCCGT 59.000 47.619 0.00 0.00 38.39 4.69
2242 2267 1.999735 TGCGAATGCTTTAAGAGTCCG 59.000 47.619 0.00 0.00 43.34 4.79
2243 2268 4.318121 CGTATGCGAATGCTTTAAGAGTCC 60.318 45.833 0.00 0.00 43.34 3.85
2244 2269 4.752224 CGTATGCGAATGCTTTAAGAGTC 58.248 43.478 0.00 0.00 43.34 3.36
2245 2270 3.001330 GCGTATGCGAATGCTTTAAGAGT 59.999 43.478 7.60 0.00 43.34 3.24
2246 2271 3.535860 GCGTATGCGAATGCTTTAAGAG 58.464 45.455 7.60 0.00 43.34 2.85
2247 2272 3.585748 GCGTATGCGAATGCTTTAAGA 57.414 42.857 7.60 0.00 43.34 2.10
2248 2273 3.940303 AAGCGTATGCGAATGCTTTAAG 58.060 40.909 7.60 0.00 46.97 1.85
2249 2274 4.549298 CGTAAGCGTATGCGAATGCTTTAA 60.549 41.667 19.07 3.84 46.97 1.52
2250 2275 3.060807 CGTAAGCGTATGCGAATGCTTTA 60.061 43.478 19.07 6.53 46.97 1.85
2251 2276 2.285602 CGTAAGCGTATGCGAATGCTTT 60.286 45.455 19.07 7.28 46.97 3.51
2267 2292 1.660575 CGCCCGGTATCTGCGTAAG 60.661 63.158 13.07 0.00 43.12 2.34
2268 2293 2.414179 CGCCCGGTATCTGCGTAA 59.586 61.111 13.07 0.00 43.12 3.18
2269 2294 3.598715 CCGCCCGGTATCTGCGTA 61.599 66.667 18.53 0.00 46.44 4.42
2284 2309 2.585869 CGAATTGATCCGCGGACCG 61.586 63.158 33.75 21.47 0.00 4.79
2285 2310 2.244651 CCGAATTGATCCGCGGACC 61.245 63.158 33.75 24.63 46.29 4.46
2286 2311 1.227147 TCCGAATTGATCCGCGGAC 60.227 57.895 33.75 23.91 46.80 4.79
2288 2313 0.880278 ACATCCGAATTGATCCGCGG 60.880 55.000 22.12 22.12 44.83 6.46
2289 2314 0.937304 AACATCCGAATTGATCCGCG 59.063 50.000 0.00 0.00 0.00 6.46
2290 2315 1.070577 CGAACATCCGAATTGATCCGC 60.071 52.381 0.00 0.00 0.00 5.54
2291 2316 2.469826 TCGAACATCCGAATTGATCCG 58.530 47.619 0.00 0.00 35.42 4.18
2292 2317 4.786609 GCTTTCGAACATCCGAATTGATCC 60.787 45.833 0.00 0.00 46.21 3.36
2293 2318 4.274865 GCTTTCGAACATCCGAATTGATC 58.725 43.478 0.00 0.00 46.21 2.92
2294 2319 3.065371 GGCTTTCGAACATCCGAATTGAT 59.935 43.478 0.00 0.00 46.21 2.57
2295 2320 2.418628 GGCTTTCGAACATCCGAATTGA 59.581 45.455 0.00 0.00 46.21 2.57
2296 2321 2.477863 GGGCTTTCGAACATCCGAATTG 60.478 50.000 0.00 0.00 46.21 2.32
2297 2322 1.743394 GGGCTTTCGAACATCCGAATT 59.257 47.619 0.00 0.00 46.21 2.17
2298 2323 1.379527 GGGCTTTCGAACATCCGAAT 58.620 50.000 0.00 0.00 46.21 3.34
2299 2324 1.017177 CGGGCTTTCGAACATCCGAA 61.017 55.000 20.73 0.00 45.45 4.30
2300 2325 1.447140 CGGGCTTTCGAACATCCGA 60.447 57.895 20.73 0.00 39.83 4.55
2301 2326 3.089784 CGGGCTTTCGAACATCCG 58.910 61.111 14.83 14.83 0.00 4.18
2302 2327 1.582610 TTGCGGGCTTTCGAACATCC 61.583 55.000 0.00 0.00 0.00 3.51
2303 2328 0.239879 TTTGCGGGCTTTCGAACATC 59.760 50.000 0.00 0.00 0.00 3.06
2304 2329 0.039527 GTTTGCGGGCTTTCGAACAT 60.040 50.000 0.00 0.00 0.00 2.71
2305 2330 1.357334 GTTTGCGGGCTTTCGAACA 59.643 52.632 0.00 0.00 0.00 3.18
2306 2331 1.371267 GGTTTGCGGGCTTTCGAAC 60.371 57.895 0.00 0.00 0.00 3.95
2307 2332 2.899044 CGGTTTGCGGGCTTTCGAA 61.899 57.895 0.00 0.00 0.00 3.71
2308 2333 3.350612 CGGTTTGCGGGCTTTCGA 61.351 61.111 0.00 0.00 0.00 3.71
2309 2334 4.398598 CCGGTTTGCGGGCTTTCG 62.399 66.667 0.00 0.00 0.00 3.46
2310 2335 2.981350 TCCGGTTTGCGGGCTTTC 60.981 61.111 0.00 0.00 35.33 2.62
2311 2336 3.292159 GTCCGGTTTGCGGGCTTT 61.292 61.111 0.00 0.00 35.33 3.51
2312 2337 2.472414 TATGTCCGGTTTGCGGGCTT 62.472 55.000 0.00 0.00 35.33 4.35
2313 2338 2.472414 TTATGTCCGGTTTGCGGGCT 62.472 55.000 0.00 0.00 35.33 5.19
2314 2339 1.587933 TTTATGTCCGGTTTGCGGGC 61.588 55.000 0.00 0.00 35.33 6.13
2315 2340 0.169451 GTTTATGTCCGGTTTGCGGG 59.831 55.000 0.00 0.00 36.54 6.13
2316 2341 0.169451 GGTTTATGTCCGGTTTGCGG 59.831 55.000 0.00 0.00 0.00 5.69
2317 2342 0.875728 TGGTTTATGTCCGGTTTGCG 59.124 50.000 0.00 0.00 0.00 4.85
2318 2343 2.156098 TCTGGTTTATGTCCGGTTTGC 58.844 47.619 0.00 0.00 33.44 3.68
2319 2344 2.747446 CCTCTGGTTTATGTCCGGTTTG 59.253 50.000 0.00 0.00 33.44 2.93
2320 2345 2.640826 TCCTCTGGTTTATGTCCGGTTT 59.359 45.455 0.00 0.00 33.44 3.27
2321 2346 2.262637 TCCTCTGGTTTATGTCCGGTT 58.737 47.619 0.00 0.00 33.44 4.44
2322 2347 1.946984 TCCTCTGGTTTATGTCCGGT 58.053 50.000 0.00 0.00 33.44 5.28
2323 2348 3.560636 AATCCTCTGGTTTATGTCCGG 57.439 47.619 0.00 0.00 0.00 5.14
2324 2349 4.335594 GGAAAATCCTCTGGTTTATGTCCG 59.664 45.833 0.00 0.00 32.53 4.79
2325 2350 4.335594 CGGAAAATCCTCTGGTTTATGTCC 59.664 45.833 0.00 0.00 33.30 4.02
2326 2351 4.941873 ACGGAAAATCCTCTGGTTTATGTC 59.058 41.667 0.00 0.00 33.30 3.06
2327 2352 4.918588 ACGGAAAATCCTCTGGTTTATGT 58.081 39.130 0.00 0.00 33.30 2.29
2328 2353 5.065218 CAGACGGAAAATCCTCTGGTTTATG 59.935 44.000 13.54 0.00 37.76 1.90
2329 2354 5.186198 CAGACGGAAAATCCTCTGGTTTAT 58.814 41.667 13.54 0.00 37.76 1.40
2330 2355 4.564821 CCAGACGGAAAATCCTCTGGTTTA 60.565 45.833 23.09 0.00 45.99 2.01
2331 2356 3.412386 CAGACGGAAAATCCTCTGGTTT 58.588 45.455 13.54 0.00 37.76 3.27
2332 2357 2.290323 CCAGACGGAAAATCCTCTGGTT 60.290 50.000 23.09 0.00 45.99 3.67
2333 2358 1.279271 CCAGACGGAAAATCCTCTGGT 59.721 52.381 23.09 5.84 45.99 4.00
2334 2359 2.029838 CCAGACGGAAAATCCTCTGG 57.970 55.000 20.53 20.53 45.95 3.86
2335 2360 2.234908 AGTCCAGACGGAAAATCCTCTG 59.765 50.000 14.05 14.05 45.20 3.35
2336 2361 2.234908 CAGTCCAGACGGAAAATCCTCT 59.765 50.000 0.00 0.00 45.20 3.69
2337 2362 2.622436 CAGTCCAGACGGAAAATCCTC 58.378 52.381 0.00 0.00 45.20 3.71
2338 2363 1.339151 GCAGTCCAGACGGAAAATCCT 60.339 52.381 1.92 0.00 45.20 3.24
2339 2364 1.087501 GCAGTCCAGACGGAAAATCC 58.912 55.000 1.92 0.00 45.20 3.01
2340 2365 1.734465 CAGCAGTCCAGACGGAAAATC 59.266 52.381 1.92 0.00 45.20 2.17
2341 2366 1.813513 CAGCAGTCCAGACGGAAAAT 58.186 50.000 1.92 0.00 45.20 1.82
2342 2367 0.884704 GCAGCAGTCCAGACGGAAAA 60.885 55.000 1.92 0.00 45.20 2.29
2343 2368 1.301716 GCAGCAGTCCAGACGGAAA 60.302 57.895 1.92 0.00 45.20 3.13
2344 2369 2.343758 GCAGCAGTCCAGACGGAA 59.656 61.111 1.92 0.00 45.20 4.30
2345 2370 3.695606 GGCAGCAGTCCAGACGGA 61.696 66.667 1.92 0.00 39.79 4.69
2346 2371 4.007644 TGGCAGCAGTCCAGACGG 62.008 66.667 0.00 0.00 36.20 4.79
2347 2372 2.740055 GTGGCAGCAGTCCAGACG 60.740 66.667 0.00 0.00 33.63 4.18
2348 2373 2.154798 TACGTGGCAGCAGTCCAGAC 62.155 60.000 0.00 0.00 33.63 3.51
2349 2374 1.906333 TACGTGGCAGCAGTCCAGA 60.906 57.895 0.00 0.00 33.63 3.86
2350 2375 1.738099 GTACGTGGCAGCAGTCCAG 60.738 63.158 0.00 0.00 33.63 3.86
2351 2376 2.342279 GTACGTGGCAGCAGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
2352 2377 2.809601 CGTACGTGGCAGCAGTCC 60.810 66.667 7.22 0.00 0.00 3.85
2353 2378 3.479269 GCGTACGTGGCAGCAGTC 61.479 66.667 17.90 0.00 0.00 3.51
2354 2379 3.589654 ATGCGTACGTGGCAGCAGT 62.590 57.895 17.90 2.61 44.71 4.40
2355 2380 2.802667 GATGCGTACGTGGCAGCAG 61.803 63.158 21.62 0.00 45.55 4.24
2356 2381 2.813474 GATGCGTACGTGGCAGCA 60.813 61.111 21.62 16.21 45.55 4.41
2357 2382 3.564027 GGATGCGTACGTGGCAGC 61.564 66.667 19.34 19.34 44.71 5.25
2358 2383 3.254654 CGGATGCGTACGTGGCAG 61.255 66.667 17.90 3.34 44.71 4.85
2359 2384 3.750155 TCGGATGCGTACGTGGCA 61.750 61.111 17.90 16.77 45.71 4.92
2360 2385 3.252484 GTCGGATGCGTACGTGGC 61.252 66.667 17.90 1.72 32.06 5.01
2361 2386 2.156446 GTGTCGGATGCGTACGTGG 61.156 63.158 17.90 2.20 32.06 4.94
2362 2387 2.156446 GGTGTCGGATGCGTACGTG 61.156 63.158 17.90 2.40 32.06 4.49
2363 2388 2.180017 GGTGTCGGATGCGTACGT 59.820 61.111 17.90 0.00 32.06 3.57
2364 2389 2.947621 CGGTGTCGGATGCGTACG 60.948 66.667 11.84 11.84 0.00 3.67
2365 2390 2.156446 CACGGTGTCGGATGCGTAC 61.156 63.158 6.49 7.34 41.39 3.67
2366 2391 2.179767 CACGGTGTCGGATGCGTA 59.820 61.111 6.49 0.00 41.39 4.42
2367 2392 4.735132 CCACGGTGTCGGATGCGT 62.735 66.667 6.49 0.00 41.39 5.24
2368 2393 4.429212 TCCACGGTGTCGGATGCG 62.429 66.667 7.45 0.00 41.39 4.73
2369 2394 2.813908 GTCCACGGTGTCGGATGC 60.814 66.667 7.45 0.00 41.39 3.91
2370 2395 1.736645 GTGTCCACGGTGTCGGATG 60.737 63.158 7.45 0.00 41.39 3.51
2371 2396 2.204461 TGTGTCCACGGTGTCGGAT 61.204 57.895 7.45 0.00 41.39 4.18
2372 2397 2.834043 TGTGTCCACGGTGTCGGA 60.834 61.111 7.45 0.00 41.39 4.55
2373 2398 2.660552 GTGTGTCCACGGTGTCGG 60.661 66.667 7.45 0.00 41.39 4.79
2374 2399 1.660575 GAGTGTGTCCACGGTGTCG 60.661 63.158 7.45 0.00 46.56 4.35
2375 2400 0.179094 TTGAGTGTGTCCACGGTGTC 60.179 55.000 7.45 0.76 46.56 3.67
2376 2401 0.250793 TTTGAGTGTGTCCACGGTGT 59.749 50.000 7.45 0.00 46.56 4.16
2377 2402 1.374560 TTTTGAGTGTGTCCACGGTG 58.625 50.000 0.00 0.00 46.56 4.94
2378 2403 2.158813 AGATTTTGAGTGTGTCCACGGT 60.159 45.455 0.00 0.00 46.56 4.83
2379 2404 2.480419 GAGATTTTGAGTGTGTCCACGG 59.520 50.000 0.00 0.00 46.56 4.94
2380 2405 3.393800 AGAGATTTTGAGTGTGTCCACG 58.606 45.455 0.00 0.00 46.56 4.94
2381 2406 3.748568 GGAGAGATTTTGAGTGTGTCCAC 59.251 47.826 0.00 0.00 42.17 4.02
2382 2407 3.244561 GGGAGAGATTTTGAGTGTGTCCA 60.245 47.826 0.00 0.00 0.00 4.02
2383 2408 3.339141 GGGAGAGATTTTGAGTGTGTCC 58.661 50.000 0.00 0.00 0.00 4.02
2384 2409 2.996621 CGGGAGAGATTTTGAGTGTGTC 59.003 50.000 0.00 0.00 0.00 3.67
2385 2410 2.872038 GCGGGAGAGATTTTGAGTGTGT 60.872 50.000 0.00 0.00 0.00 3.72
2386 2411 1.734465 GCGGGAGAGATTTTGAGTGTG 59.266 52.381 0.00 0.00 0.00 3.82
2387 2412 1.347707 TGCGGGAGAGATTTTGAGTGT 59.652 47.619 0.00 0.00 0.00 3.55
2388 2413 1.734465 GTGCGGGAGAGATTTTGAGTG 59.266 52.381 0.00 0.00 0.00 3.51
2389 2414 1.339151 GGTGCGGGAGAGATTTTGAGT 60.339 52.381 0.00 0.00 0.00 3.41
2390 2415 1.373570 GGTGCGGGAGAGATTTTGAG 58.626 55.000 0.00 0.00 0.00 3.02
2391 2416 0.035439 GGGTGCGGGAGAGATTTTGA 60.035 55.000 0.00 0.00 0.00 2.69
2392 2417 0.035056 AGGGTGCGGGAGAGATTTTG 60.035 55.000 0.00 0.00 0.00 2.44
2393 2418 0.253327 GAGGGTGCGGGAGAGATTTT 59.747 55.000 0.00 0.00 0.00 1.82
2394 2419 0.618968 AGAGGGTGCGGGAGAGATTT 60.619 55.000 0.00 0.00 0.00 2.17
2395 2420 1.002274 AGAGGGTGCGGGAGAGATT 59.998 57.895 0.00 0.00 0.00 2.40
2396 2421 1.456705 GAGAGGGTGCGGGAGAGAT 60.457 63.158 0.00 0.00 0.00 2.75
2397 2422 2.043852 GAGAGGGTGCGGGAGAGA 60.044 66.667 0.00 0.00 0.00 3.10
2398 2423 3.151022 GGAGAGGGTGCGGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
2399 2424 3.992641 TGGAGAGGGTGCGGGAGA 61.993 66.667 0.00 0.00 0.00 3.71
2400 2425 3.775654 GTGGAGAGGGTGCGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
2405 2430 4.373116 TTCGCGTGGAGAGGGTGC 62.373 66.667 5.77 0.00 0.00 5.01
2406 2431 2.125912 CTTCGCGTGGAGAGGGTG 60.126 66.667 5.77 0.00 0.00 4.61
2407 2432 4.070552 GCTTCGCGTGGAGAGGGT 62.071 66.667 8.91 0.00 0.00 4.34
2418 2443 2.202349 GTGTGGCAATCGCTTCGC 60.202 61.111 0.00 0.00 38.60 4.70
2419 2444 1.796151 ATGTGTGGCAATCGCTTCG 59.204 52.632 0.00 0.00 38.60 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.