Multiple sequence alignment - TraesCS6A01G205100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G205100 chr6A 100.000 2795 0 0 1 2795 358149769 358152563 0.000000e+00 5162.0
1 TraesCS6A01G205100 chr6D 97.888 2415 43 4 111 2518 263007718 263010131 0.000000e+00 4170.0
2 TraesCS6A01G205100 chr6D 91.371 197 15 1 2598 2794 263010372 263010566 4.590000e-68 268.0
3 TraesCS6A01G205100 chr6D 93.636 110 4 1 2 111 263007569 263007675 8.010000e-36 161.0
4 TraesCS6A01G205100 chr6B 94.067 2090 94 14 141 2218 346805871 346803800 0.000000e+00 3145.0
5 TraesCS6A01G205100 chr4A 93.636 110 4 1 2 111 602081844 602081738 8.010000e-36 161.0
6 TraesCS6A01G205100 chr3D 94.231 104 2 2 2 105 568613912 568614011 3.730000e-34 156.0
7 TraesCS6A01G205100 chr7D 91.743 109 5 3 2 110 462351881 462351777 6.240000e-32 148.0
8 TraesCS6A01G205100 chr7D 90.476 84 8 0 1184 1267 56941238 56941321 8.180000e-21 111.0
9 TraesCS6A01G205100 chr7D 84.211 95 14 1 1178 1272 401536681 401536774 1.070000e-14 91.6
10 TraesCS6A01G205100 chr5B 91.743 109 5 2 2 110 322888917 322888813 6.240000e-32 148.0
11 TraesCS6A01G205100 chr4D 90.000 110 8 1 2 111 503640497 503640391 3.750000e-29 139.0
12 TraesCS6A01G205100 chr7A 89.091 110 9 1 2 111 74890700 74890594 1.750000e-27 134.0
13 TraesCS6A01G205100 chr5D 89.091 110 9 1 2 111 459962455 459962561 1.750000e-27 134.0
14 TraesCS6A01G205100 chr3A 89.720 107 7 2 6 111 457659972 457660075 1.750000e-27 134.0
15 TraesCS6A01G205100 chr2D 91.781 73 6 0 1196 1268 440317313 440317241 4.930000e-18 102.0
16 TraesCS6A01G205100 chr2D 85.393 89 12 1 1184 1272 175825110 175825023 1.070000e-14 91.6
17 TraesCS6A01G205100 chr1D 86.170 94 11 2 1176 1268 480894466 480894558 1.770000e-17 100.0
18 TraesCS6A01G205100 chr1D 81.731 104 17 2 1177 1280 298568648 298568547 4.960000e-13 86.1
19 TraesCS6A01G205100 chr1B 81.731 104 18 1 1177 1280 401619044 401618942 4.960000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G205100 chr6A 358149769 358152563 2794 False 5162 5162 100.000000 1 2795 1 chr6A.!!$F1 2794
1 TraesCS6A01G205100 chr6D 263007569 263010566 2997 False 1533 4170 94.298333 2 2794 3 chr6D.!!$F1 2792
2 TraesCS6A01G205100 chr6B 346803800 346805871 2071 True 3145 3145 94.067000 141 2218 1 chr6B.!!$R1 2077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 2.35776 TTTGCCCGCCAGTACGTC 60.358 61.111 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 1855 0.251354 GGAAGCTCCTGATGTGCTCA 59.749 55.0 0.0 0.0 42.76 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.357760 TTTGCCCGCCAGTACGTC 60.358 61.111 0.00 0.00 0.00 4.34
260 304 9.672086 TTTCTCAGTTTAACATTATTTTCACCG 57.328 29.630 0.00 0.00 0.00 4.94
1152 1208 7.609532 TCATTTCCAGTTTGTTTTGGTTTTGAT 59.390 29.630 0.00 0.00 35.89 2.57
1258 1314 5.446031 GGGACGTCTTATGTTTAGAAACG 57.554 43.478 16.46 0.00 41.74 3.60
1460 1516 3.117888 TCAGTGAGGAAACAAAAGGCTCT 60.118 43.478 0.00 0.00 0.00 4.09
1640 1696 4.262635 CGTGAAAGGCCATACTGGATCTAT 60.263 45.833 5.01 0.00 40.96 1.98
1649 1705 5.923114 GCCATACTGGATCTATGTATATGCG 59.077 44.000 0.00 0.00 40.96 4.73
1657 1713 3.780902 TCTATGTATATGCGGAATGGCG 58.219 45.455 0.00 0.00 35.06 5.69
1768 1824 4.168760 GTTGCTCATGGTATCACAAAAGC 58.831 43.478 0.00 0.00 34.46 3.51
1799 1855 1.133199 CAGAGATCCAGAGTAGGGCCT 60.133 57.143 12.58 12.58 0.00 5.19
1840 1896 3.698040 CTCCAAGCACAAGCAATATCCTT 59.302 43.478 0.00 0.00 45.49 3.36
2208 2267 1.254026 ACCCTCTTGATTCGTCGTGA 58.746 50.000 0.00 0.00 0.00 4.35
2257 2316 2.110627 GAGCCGGCATCATCAGCT 59.889 61.111 31.54 3.33 36.25 4.24
2276 2335 2.798445 TACGAGGCCTTCCCAGAGCA 62.798 60.000 6.77 0.00 35.39 4.26
2283 2342 0.392729 CCTTCCCAGAGCAAGAGCAG 60.393 60.000 0.00 0.00 45.49 4.24
2290 2349 0.319383 AGAGCAAGAGCAGTGTGTCG 60.319 55.000 0.00 0.00 45.49 4.35
2295 2354 0.249489 AAGAGCAGTGTGTCGGTGAC 60.249 55.000 0.00 0.00 0.00 3.67
2323 2382 0.174845 GCCACGTATGTACTGCCTCA 59.825 55.000 0.00 0.00 0.00 3.86
2332 2391 0.247736 GTACTGCCTCAGTCCAGGTG 59.752 60.000 2.39 0.00 41.21 4.00
2343 2402 3.650942 TCAGTCCAGGTGGAGTTAAATGT 59.349 43.478 3.40 0.00 45.26 2.71
2347 2406 5.072600 AGTCCAGGTGGAGTTAAATGTACAA 59.927 40.000 0.00 0.00 45.26 2.41
2360 2419 9.138596 AGTTAAATGTACAAAACCACCACTATT 57.861 29.630 0.00 0.00 0.00 1.73
2376 2435 2.745821 ACTATTGTGTCACGACTAGCGA 59.254 45.455 12.46 0.00 44.57 4.93
2392 2451 8.700644 ACGACTAGCGAAAAATCATCATATAAC 58.299 33.333 12.46 0.00 44.57 1.89
2398 2457 8.773645 AGCGAAAAATCATCATATAACGATTCA 58.226 29.630 0.00 0.00 0.00 2.57
2483 2545 3.572255 ACGTTTTGATGTGGCAAATAGGT 59.428 39.130 0.00 0.00 37.57 3.08
2489 2551 1.518325 TGTGGCAAATAGGTCACGTG 58.482 50.000 9.94 9.94 46.16 4.49
2490 2552 1.070914 TGTGGCAAATAGGTCACGTGA 59.929 47.619 15.76 15.76 46.16 4.35
2491 2553 1.732259 GTGGCAAATAGGTCACGTGAG 59.268 52.381 20.73 6.41 33.20 3.51
2530 2814 2.113139 CGGACCAACCAAGCCAGT 59.887 61.111 0.00 0.00 38.90 4.00
2536 2820 1.242076 CCAACCAAGCCAGTCAGAAG 58.758 55.000 0.00 0.00 0.00 2.85
2537 2821 1.202806 CCAACCAAGCCAGTCAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
2538 2822 2.553904 CCAACCAAGCCAGTCAGAAGAT 60.554 50.000 0.00 0.00 0.00 2.40
2539 2823 2.486472 ACCAAGCCAGTCAGAAGATG 57.514 50.000 0.00 0.00 0.00 2.90
2540 2824 1.093159 CCAAGCCAGTCAGAAGATGC 58.907 55.000 0.00 0.00 0.00 3.91
2541 2825 1.093159 CAAGCCAGTCAGAAGATGCC 58.907 55.000 0.00 0.00 0.00 4.40
2542 2826 0.034670 AAGCCAGTCAGAAGATGCCC 60.035 55.000 0.00 0.00 0.00 5.36
2543 2827 1.203441 AGCCAGTCAGAAGATGCCCA 61.203 55.000 0.00 0.00 0.00 5.36
2544 2828 0.322816 GCCAGTCAGAAGATGCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
2545 2829 1.887956 GCCAGTCAGAAGATGCCCAAA 60.888 52.381 0.00 0.00 0.00 3.28
2546 2830 2.517959 CCAGTCAGAAGATGCCCAAAA 58.482 47.619 0.00 0.00 0.00 2.44
2547 2831 2.892852 CCAGTCAGAAGATGCCCAAAAA 59.107 45.455 0.00 0.00 0.00 1.94
2548 2832 3.057033 CCAGTCAGAAGATGCCCAAAAAG 60.057 47.826 0.00 0.00 0.00 2.27
2549 2833 2.560105 AGTCAGAAGATGCCCAAAAAGC 59.440 45.455 0.00 0.00 0.00 3.51
2550 2834 2.297033 GTCAGAAGATGCCCAAAAAGCA 59.703 45.455 0.00 0.00 45.94 3.91
2551 2835 2.964464 TCAGAAGATGCCCAAAAAGCAA 59.036 40.909 0.00 0.00 44.83 3.91
2552 2836 3.387374 TCAGAAGATGCCCAAAAAGCAAA 59.613 39.130 0.00 0.00 44.83 3.68
2553 2837 3.495753 CAGAAGATGCCCAAAAAGCAAAC 59.504 43.478 0.00 0.00 44.83 2.93
2554 2838 3.134442 AGAAGATGCCCAAAAAGCAAACA 59.866 39.130 0.00 0.00 44.83 2.83
2555 2839 3.116079 AGATGCCCAAAAAGCAAACAG 57.884 42.857 0.00 0.00 44.83 3.16
2556 2840 2.435437 AGATGCCCAAAAAGCAAACAGT 59.565 40.909 0.00 0.00 44.83 3.55
2557 2841 2.021355 TGCCCAAAAAGCAAACAGTG 57.979 45.000 0.00 0.00 37.28 3.66
2558 2842 1.552337 TGCCCAAAAAGCAAACAGTGA 59.448 42.857 0.00 0.00 37.28 3.41
2559 2843 1.933181 GCCCAAAAAGCAAACAGTGAC 59.067 47.619 0.00 0.00 0.00 3.67
2560 2844 2.549926 CCCAAAAAGCAAACAGTGACC 58.450 47.619 0.00 0.00 0.00 4.02
2561 2845 2.192624 CCAAAAAGCAAACAGTGACCG 58.807 47.619 0.00 0.00 0.00 4.79
2562 2846 1.587946 CAAAAAGCAAACAGTGACCGC 59.412 47.619 0.00 0.00 0.00 5.68
2563 2847 1.102978 AAAAGCAAACAGTGACCGCT 58.897 45.000 0.00 0.00 33.45 5.52
2564 2848 0.663153 AAAGCAAACAGTGACCGCTC 59.337 50.000 0.00 0.00 31.17 5.03
2565 2849 1.166531 AAGCAAACAGTGACCGCTCC 61.167 55.000 0.00 0.00 31.17 4.70
2566 2850 1.598130 GCAAACAGTGACCGCTCCT 60.598 57.895 0.00 0.00 0.00 3.69
2567 2851 1.569479 GCAAACAGTGACCGCTCCTC 61.569 60.000 0.00 0.00 0.00 3.71
2568 2852 0.249868 CAAACAGTGACCGCTCCTCA 60.250 55.000 0.00 0.00 0.00 3.86
2569 2853 0.249911 AAACAGTGACCGCTCCTCAC 60.250 55.000 0.00 0.00 38.70 3.51
2570 2854 2.100879 AACAGTGACCGCTCCTCACC 62.101 60.000 0.00 0.00 39.15 4.02
2571 2855 2.997897 AGTGACCGCTCCTCACCC 60.998 66.667 0.00 0.00 39.15 4.61
2572 2856 4.083862 GTGACCGCTCCTCACCCC 62.084 72.222 0.00 0.00 33.23 4.95
2576 2860 4.787280 CCGCTCCTCACCCCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
2577 2861 2.685380 CGCTCCTCACCCCCTCTT 60.685 66.667 0.00 0.00 0.00 2.85
2578 2862 2.993853 GCTCCTCACCCCCTCTTG 59.006 66.667 0.00 0.00 0.00 3.02
2579 2863 2.993853 CTCCTCACCCCCTCTTGC 59.006 66.667 0.00 0.00 0.00 4.01
2580 2864 1.614824 CTCCTCACCCCCTCTTGCT 60.615 63.158 0.00 0.00 0.00 3.91
2581 2865 1.613630 TCCTCACCCCCTCTTGCTC 60.614 63.158 0.00 0.00 0.00 4.26
2582 2866 1.614824 CCTCACCCCCTCTTGCTCT 60.615 63.158 0.00 0.00 0.00 4.09
2583 2867 1.621672 CCTCACCCCCTCTTGCTCTC 61.622 65.000 0.00 0.00 0.00 3.20
2584 2868 1.954362 CTCACCCCCTCTTGCTCTCG 61.954 65.000 0.00 0.00 0.00 4.04
2585 2869 3.394836 ACCCCCTCTTGCTCTCGC 61.395 66.667 0.00 0.00 0.00 5.03
2586 2870 3.080121 CCCCCTCTTGCTCTCGCT 61.080 66.667 0.00 0.00 36.97 4.93
2587 2871 2.498726 CCCCTCTTGCTCTCGCTC 59.501 66.667 0.00 0.00 36.97 5.03
2588 2872 2.498726 CCCTCTTGCTCTCGCTCC 59.501 66.667 0.00 0.00 36.97 4.70
2589 2873 2.498726 CCTCTTGCTCTCGCTCCC 59.501 66.667 0.00 0.00 36.97 4.30
2590 2874 2.498726 CTCTTGCTCTCGCTCCCC 59.501 66.667 0.00 0.00 36.97 4.81
2591 2875 2.038007 TCTTGCTCTCGCTCCCCT 59.962 61.111 0.00 0.00 36.97 4.79
2592 2876 2.015227 CTCTTGCTCTCGCTCCCCTC 62.015 65.000 0.00 0.00 36.97 4.30
2593 2877 2.038007 TTGCTCTCGCTCCCCTCT 59.962 61.111 0.00 0.00 36.97 3.69
2594 2878 2.295472 CTTGCTCTCGCTCCCCTCTG 62.295 65.000 0.00 0.00 36.97 3.35
2595 2879 4.219999 GCTCTCGCTCCCCTCTGC 62.220 72.222 0.00 0.00 0.00 4.26
2596 2880 3.535962 CTCTCGCTCCCCTCTGCC 61.536 72.222 0.00 0.00 0.00 4.85
2630 2914 6.998074 TCAATCTACAAGTTGTCATCACCTTT 59.002 34.615 12.82 0.00 0.00 3.11
2633 2917 4.900635 ACAAGTTGTCATCACCTTTCAC 57.099 40.909 1.64 0.00 0.00 3.18
2641 2925 7.335422 AGTTGTCATCACCTTTCACAATATCTC 59.665 37.037 0.00 0.00 30.06 2.75
2648 2932 5.821470 CACCTTTCACAATATCTCTGCATCT 59.179 40.000 0.00 0.00 0.00 2.90
2655 2939 6.482308 TCACAATATCTCTGCATCTCATTGTG 59.518 38.462 22.47 22.47 46.60 3.33
2656 2940 6.260271 CACAATATCTCTGCATCTCATTGTGT 59.740 38.462 21.30 6.50 43.14 3.72
2685 2969 0.454957 CCTCGAACAGCCGCAAAATG 60.455 55.000 0.00 0.00 0.00 2.32
2710 2994 1.678970 GAGCCCTCCAAATGCCGTT 60.679 57.895 0.00 0.00 0.00 4.44
2730 3014 4.559300 CGTTTCGACACCCTTTCTACCTTA 60.559 45.833 0.00 0.00 0.00 2.69
2757 3041 7.032377 GTCTTTGGACAAAGTGAGATCTTTT 57.968 36.000 20.53 0.00 45.88 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.342477 GGCAGGGCCCTCTCCTTT 61.342 66.667 25.77 0.00 44.06 3.11
260 304 9.638239 TTGATTGTTCCTGAAAATATTTAGCAC 57.362 29.630 0.01 0.00 0.00 4.40
298 342 6.969828 AAAGTCTATCGACAGAATTTCACC 57.030 37.500 12.97 0.00 38.14 4.02
913 969 2.365617 GCTAGCATGGTAAGCAGGACTA 59.634 50.000 10.63 0.00 36.26 2.59
1152 1208 3.569194 TTGCCAAGTAAGTTGACTCCA 57.431 42.857 0.00 0.00 38.60 3.86
1258 1314 3.279434 CCAGCAAATAACTACACCCTCC 58.721 50.000 0.00 0.00 0.00 4.30
1361 1417 6.071391 GCTGAATCCAAAGTTATTTCCAAGGA 60.071 38.462 0.00 0.00 0.00 3.36
1460 1516 3.507162 TCTGCAGGTTGATTTTCCTCA 57.493 42.857 15.13 0.00 30.91 3.86
1640 1696 2.248280 AACGCCATTCCGCATATACA 57.752 45.000 0.00 0.00 0.00 2.29
1649 1705 4.918810 ATTCCAATTCTAACGCCATTCC 57.081 40.909 0.00 0.00 0.00 3.01
1768 1824 2.027385 TGGATCTCTGACGGTCTCATG 58.973 52.381 9.88 0.00 0.00 3.07
1799 1855 0.251354 GGAAGCTCCTGATGTGCTCA 59.749 55.000 0.00 0.00 42.76 4.26
1840 1896 2.995939 GAGATAATGCCGCAATCGATCA 59.004 45.455 0.00 0.00 38.10 2.92
2208 2267 6.879458 ACTTGTAGAAAACTCGCCATCTTAAT 59.121 34.615 0.00 0.00 0.00 1.40
2257 2316 2.058595 GCTCTGGGAAGGCCTCGTA 61.059 63.158 5.23 0.00 0.00 3.43
2276 2335 0.249489 GTCACCGACACACTGCTCTT 60.249 55.000 0.00 0.00 32.09 2.85
2283 2342 0.529119 ACTTTCCGTCACCGACACAC 60.529 55.000 0.00 0.00 35.63 3.82
2290 2349 1.652563 GTGGCAACTTTCCGTCACC 59.347 57.895 0.00 0.00 37.61 4.02
2295 2354 1.153353 ACATACGTGGCAACTTTCCG 58.847 50.000 0.00 0.00 37.61 4.30
2323 2382 4.595781 TGTACATTTAACTCCACCTGGACT 59.404 41.667 0.00 0.00 39.78 3.85
2332 2391 6.040054 AGTGGTGGTTTTGTACATTTAACTCC 59.960 38.462 0.00 9.21 0.00 3.85
2360 2419 2.495409 TTTTCGCTAGTCGTGACACA 57.505 45.000 6.37 0.00 39.67 3.72
2392 2451 2.847717 CGGTGCAAAATGTCATGAATCG 59.152 45.455 0.00 0.00 0.00 3.34
2398 2457 2.884012 TCAGTTCGGTGCAAAATGTCAT 59.116 40.909 0.00 0.00 0.00 3.06
2444 2506 2.221169 ACGTGCTCAATTCTTTGCTCA 58.779 42.857 0.00 0.00 32.61 4.26
2483 2545 1.201647 GCTTAGGCACTACTCACGTGA 59.798 52.381 18.88 18.88 42.67 4.35
2489 2551 3.436496 CGTTACTGCTTAGGCACTACTC 58.564 50.000 0.00 0.00 42.67 2.59
2490 2552 2.165845 CCGTTACTGCTTAGGCACTACT 59.834 50.000 0.00 0.00 42.67 2.57
2491 2553 2.537401 CCGTTACTGCTTAGGCACTAC 58.463 52.381 0.00 0.00 42.67 2.73
2530 2814 2.596346 TGCTTTTTGGGCATCTTCTGA 58.404 42.857 0.00 0.00 34.56 3.27
2536 2820 2.545106 CACTGTTTGCTTTTTGGGCATC 59.455 45.455 0.00 0.00 39.54 3.91
2537 2821 2.170187 TCACTGTTTGCTTTTTGGGCAT 59.830 40.909 0.00 0.00 39.54 4.40
2538 2822 1.552337 TCACTGTTTGCTTTTTGGGCA 59.448 42.857 0.00 0.00 37.97 5.36
2539 2823 1.933181 GTCACTGTTTGCTTTTTGGGC 59.067 47.619 0.00 0.00 0.00 5.36
2540 2824 2.549926 GGTCACTGTTTGCTTTTTGGG 58.450 47.619 0.00 0.00 0.00 4.12
2541 2825 2.192624 CGGTCACTGTTTGCTTTTTGG 58.807 47.619 0.00 0.00 0.00 3.28
2542 2826 1.587946 GCGGTCACTGTTTGCTTTTTG 59.412 47.619 0.00 0.00 0.00 2.44
2543 2827 1.476488 AGCGGTCACTGTTTGCTTTTT 59.524 42.857 0.00 0.00 30.27 1.94
2544 2828 1.065551 GAGCGGTCACTGTTTGCTTTT 59.934 47.619 10.30 0.00 35.73 2.27
2545 2829 0.663153 GAGCGGTCACTGTTTGCTTT 59.337 50.000 10.30 0.00 35.73 3.51
2546 2830 1.166531 GGAGCGGTCACTGTTTGCTT 61.167 55.000 17.59 0.00 35.73 3.91
2547 2831 1.598130 GGAGCGGTCACTGTTTGCT 60.598 57.895 17.59 0.00 38.89 3.91
2548 2832 1.569479 GAGGAGCGGTCACTGTTTGC 61.569 60.000 17.59 0.00 0.00 3.68
2549 2833 0.249868 TGAGGAGCGGTCACTGTTTG 60.250 55.000 17.59 0.00 0.00 2.93
2550 2834 0.249911 GTGAGGAGCGGTCACTGTTT 60.250 55.000 17.59 0.00 41.05 2.83
2551 2835 1.367840 GTGAGGAGCGGTCACTGTT 59.632 57.895 17.59 0.00 41.05 3.16
2552 2836 2.574955 GGTGAGGAGCGGTCACTGT 61.575 63.158 17.59 0.00 43.34 3.55
2553 2837 2.262915 GGTGAGGAGCGGTCACTG 59.737 66.667 17.59 0.00 43.34 3.66
2554 2838 2.997897 GGGTGAGGAGCGGTCACT 60.998 66.667 17.59 10.97 43.34 3.41
2555 2839 4.083862 GGGGTGAGGAGCGGTCAC 62.084 72.222 17.59 10.26 43.12 3.67
2559 2843 4.787280 AGAGGGGGTGAGGAGCGG 62.787 72.222 0.00 0.00 0.00 5.52
2560 2844 2.685380 AAGAGGGGGTGAGGAGCG 60.685 66.667 0.00 0.00 0.00 5.03
2561 2845 2.993853 CAAGAGGGGGTGAGGAGC 59.006 66.667 0.00 0.00 0.00 4.70
2562 2846 1.614824 AGCAAGAGGGGGTGAGGAG 60.615 63.158 0.00 0.00 0.00 3.69
2563 2847 1.613630 GAGCAAGAGGGGGTGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
2564 2848 1.614824 AGAGCAAGAGGGGGTGAGG 60.615 63.158 0.00 0.00 0.00 3.86
2565 2849 1.904032 GAGAGCAAGAGGGGGTGAG 59.096 63.158 0.00 0.00 0.00 3.51
2566 2850 1.984570 CGAGAGCAAGAGGGGGTGA 60.985 63.158 0.00 0.00 0.00 4.02
2567 2851 2.581354 CGAGAGCAAGAGGGGGTG 59.419 66.667 0.00 0.00 0.00 4.61
2579 2863 3.535962 GGCAGAGGGGAGCGAGAG 61.536 72.222 0.00 0.00 0.00 3.20
2595 2879 4.585526 TAGATTGAGCGGCGGCGG 62.586 66.667 33.02 14.77 46.35 6.13
2596 2880 3.330853 GTAGATTGAGCGGCGGCG 61.331 66.667 28.70 28.70 46.35 6.46
2630 2914 6.589135 ACAATGAGATGCAGAGATATTGTGA 58.411 36.000 14.39 0.00 36.33 3.58
2633 2917 6.862711 ACACAATGAGATGCAGAGATATTG 57.137 37.500 0.00 2.41 0.00 1.90
2641 2925 3.644823 TGCAAAACACAATGAGATGCAG 58.355 40.909 0.00 0.00 37.40 4.41
2648 2932 2.622942 GAGGACCTGCAAAACACAATGA 59.377 45.455 0.00 0.00 0.00 2.57
2655 2939 1.264288 CTGTTCGAGGACCTGCAAAAC 59.736 52.381 0.00 0.00 0.00 2.43
2656 2940 1.593196 CTGTTCGAGGACCTGCAAAA 58.407 50.000 0.00 0.00 0.00 2.44
2696 2980 0.168128 GTCGAAACGGCATTTGGAGG 59.832 55.000 0.00 0.00 35.89 4.30
2702 2986 0.536460 AAGGGTGTCGAAACGGCATT 60.536 50.000 0.00 0.00 45.01 3.56
2708 2992 3.397849 AGGTAGAAAGGGTGTCGAAAC 57.602 47.619 0.00 0.00 0.00 2.78
2710 2994 5.012354 ACAATAAGGTAGAAAGGGTGTCGAA 59.988 40.000 0.00 0.00 0.00 3.71
2749 3033 3.054361 AGCCAACGGGTGATAAAAGATCT 60.054 43.478 0.00 0.00 36.17 2.75
2751 3035 3.366052 AGCCAACGGGTGATAAAAGAT 57.634 42.857 0.00 0.00 36.17 2.40
2757 3041 2.742348 TCTCTAAGCCAACGGGTGATA 58.258 47.619 0.00 0.00 36.17 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.