Multiple sequence alignment - TraesCS6A01G205000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G205000 chr6A 100.000 6774 0 0 1 6774 357877989 357871216 0.000000e+00 12510
1 TraesCS6A01G205000 chr6A 97.143 210 6 0 1 210 357863999 357863790 8.360000e-94 355
2 TraesCS6A01G205000 chr6A 96.635 208 7 0 3 210 357842569 357842362 5.030000e-91 346
3 TraesCS6A01G205000 chr7A 97.637 3005 69 2 3770 6774 79802154 79799152 0.000000e+00 5155
4 TraesCS6A01G205000 chr7A 97.415 3017 63 4 3770 6774 669442678 669445691 0.000000e+00 5125
5 TraesCS6A01G205000 chr7A 95.994 2147 80 4 1626 3769 415069770 415067627 0.000000e+00 3483
6 TraesCS6A01G205000 chr7A 96.921 1364 37 4 3770 5131 168657496 168658856 0.000000e+00 2281
7 TraesCS6A01G205000 chr7A 94.776 1340 61 6 3768 5106 293798511 293797180 0.000000e+00 2078
8 TraesCS6A01G205000 chr7A 95.993 1073 42 1 5139 6210 293797179 293796107 0.000000e+00 1742
9 TraesCS6A01G205000 chr7A 87.061 1453 126 25 208 1649 415071110 415069709 0.000000e+00 1585
10 TraesCS6A01G205000 chr7A 96.190 210 8 0 1 210 166323476 166323267 1.810000e-90 344
11 TraesCS6A01G205000 chr3A 97.208 3009 80 3 3769 6774 704171685 704174692 0.000000e+00 5088
12 TraesCS6A01G205000 chr3A 94.571 1492 61 9 5301 6774 401135041 401133552 0.000000e+00 2289
13 TraesCS6A01G205000 chr3A 95.017 1164 47 4 1626 2789 170410078 170408926 0.000000e+00 1818
14 TraesCS6A01G205000 chr3A 85.233 623 54 24 211 826 170431926 170431335 2.090000e-169 606
15 TraesCS6A01G205000 chr3A 96.209 211 7 1 1 210 124627640 124627430 1.810000e-90 344
16 TraesCS6A01G205000 chr3A 94.709 189 10 0 5117 5305 411837524 411837712 1.850000e-75 294
17 TraesCS6A01G205000 chrUn 97.363 2920 68 6 3770 6689 310740777 310743687 0.000000e+00 4957
18 TraesCS6A01G205000 chrUn 91.672 1513 118 5 2260 3769 77231087 77232594 0.000000e+00 2089
19 TraesCS6A01G205000 chr6D 97.438 2147 49 4 1626 3769 438848315 438850458 0.000000e+00 3655
20 TraesCS6A01G205000 chr6D 93.838 1493 68 10 5301 6774 163426191 163424704 0.000000e+00 2226
21 TraesCS6A01G205000 chr6D 95.498 844 37 1 807 1649 438847533 438848376 0.000000e+00 1347
22 TraesCS6A01G205000 chr6D 88.424 622 39 21 211 826 438847038 438847632 0.000000e+00 719
23 TraesCS6A01G205000 chr3D 97.205 2147 51 6 1626 3769 378785244 378787384 0.000000e+00 3624
24 TraesCS6A01G205000 chr3D 96.740 2147 64 4 1626 3769 314547402 314545259 0.000000e+00 3572
25 TraesCS6A01G205000 chr3D 95.622 2147 68 7 1626 3769 138017443 138015320 0.000000e+00 3421
26 TraesCS6A01G205000 chr3D 87.759 1446 117 26 211 1649 138018774 138017382 0.000000e+00 1635
27 TraesCS6A01G205000 chr3D 95.065 993 32 5 5798 6774 588695778 588694787 0.000000e+00 1546
28 TraesCS6A01G205000 chr3D 95.076 853 37 3 799 1649 378784453 378785302 0.000000e+00 1338
29 TraesCS6A01G205000 chr3D 96.021 779 31 0 869 1647 314548121 314547343 0.000000e+00 1267
30 TraesCS6A01G205000 chr3D 88.571 665 34 9 203 865 378783936 378784560 0.000000e+00 769
31 TraesCS6A01G205000 chr3D 87.973 582 40 19 250 826 314548641 314548085 0.000000e+00 660
32 TraesCS6A01G205000 chr5B 96.460 2147 70 4 1626 3769 283501435 283499292 0.000000e+00 3539
33 TraesCS6A01G205000 chr5B 94.582 849 44 2 802 1649 283502221 283501374 0.000000e+00 1312
34 TraesCS6A01G205000 chr5B 86.697 669 46 10 211 878 283502732 283502106 0.000000e+00 702
35 TraesCS6A01G205000 chr5B 84.405 513 53 16 203 712 648478127 648478615 4.750000e-131 479
36 TraesCS6A01G205000 chr2D 93.528 1777 92 16 1626 3400 280060215 280058460 0.000000e+00 2623
37 TraesCS6A01G205000 chr2D 94.973 1293 56 7 4018 5305 5130210 5131498 0.000000e+00 2019
38 TraesCS6A01G205000 chr4A 96.617 1537 44 5 3770 5305 707657614 707656085 0.000000e+00 2543
39 TraesCS6A01G205000 chr4A 87.824 501 37 9 203 702 654479126 654479603 3.550000e-157 566
40 TraesCS6A01G205000 chr4A 87.800 500 38 9 203 702 654450324 654450800 1.280000e-156 564
41 TraesCS6A01G205000 chr4A 96.651 209 6 1 3 210 373050743 373050951 5.030000e-91 346
42 TraesCS6A01G205000 chr1B 96.501 1486 47 3 1626 3110 451061773 451060292 0.000000e+00 2451
43 TraesCS6A01G205000 chr1B 95.309 810 37 1 841 1649 451062521 451061712 0.000000e+00 1284
44 TraesCS6A01G205000 chr1B 86.453 406 26 13 435 839 451062822 451062445 1.050000e-112 418
45 TraesCS6A01G205000 chr1B 94.712 208 9 2 215 422 451067227 451067022 8.470000e-84 322
46 TraesCS6A01G205000 chr4D 95.044 1493 41 14 5301 6774 500897730 500899208 0.000000e+00 2316
47 TraesCS6A01G205000 chr4D 94.709 1493 49 12 5301 6774 500974317 500975798 0.000000e+00 2292
48 TraesCS6A01G205000 chr4D 94.575 1493 51 13 5301 6774 500935583 500937064 0.000000e+00 2281
49 TraesCS6A01G205000 chr4D 94.166 1337 56 11 5301 6617 457301630 457302964 0.000000e+00 2017
50 TraesCS6A01G205000 chr4D 96.209 211 7 1 1 210 284471161 284471371 1.810000e-90 344
51 TraesCS6A01G205000 chr2A 93.325 1558 72 8 3770 5305 559844818 559846365 0.000000e+00 2272
52 TraesCS6A01G205000 chr2A 80.123 488 39 27 250 734 74696207 74696639 1.830000e-80 311
53 TraesCS6A01G205000 chr2A 86.364 264 34 2 5036 5297 358578782 358579045 3.090000e-73 287
54 TraesCS6A01G205000 chr5D 91.540 1513 120 5 2260 3769 434387507 434386000 0.000000e+00 2078
55 TraesCS6A01G205000 chr7D 94.091 1117 47 7 5301 6400 473981706 473980592 0.000000e+00 1679
56 TraesCS6A01G205000 chr7D 90.986 355 30 2 4953 5305 12706253 12706607 1.710000e-130 477
57 TraesCS6A01G205000 chr7D 96.682 211 6 1 1 210 179333097 179333307 3.890000e-92 350
58 TraesCS6A01G205000 chr5A 86.285 1451 136 28 210 1649 565280592 565279194 0.000000e+00 1519
59 TraesCS6A01G205000 chr5A 96.190 210 8 0 1 210 400755364 400755155 1.810000e-90 344
60 TraesCS6A01G205000 chr7B 95.280 805 33 5 4500 5302 459350511 459351312 0.000000e+00 1271
61 TraesCS6A01G205000 chr1D 92.614 853 59 2 759 1611 394804620 394803772 0.000000e+00 1223
62 TraesCS6A01G205000 chr1D 96.172 209 8 0 2 210 204922160 204922368 6.510000e-90 342
63 TraesCS6A01G205000 chr3B 92.136 852 64 2 799 1649 729779906 729780755 0.000000e+00 1199
64 TraesCS6A01G205000 chr2B 94.259 540 30 1 841 1379 682688086 682687547 0.000000e+00 824
65 TraesCS6A01G205000 chr2B 86.645 629 38 13 215 839 682688596 682688010 0.000000e+00 654


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G205000 chr6A 357871216 357877989 6773 True 12510.000000 12510 100.000000 1 6774 1 chr6A.!!$R3 6773
1 TraesCS6A01G205000 chr7A 79799152 79802154 3002 True 5155.000000 5155 97.637000 3770 6774 1 chr7A.!!$R1 3004
2 TraesCS6A01G205000 chr7A 669442678 669445691 3013 False 5125.000000 5125 97.415000 3770 6774 1 chr7A.!!$F2 3004
3 TraesCS6A01G205000 chr7A 415067627 415071110 3483 True 2534.000000 3483 91.527500 208 3769 2 chr7A.!!$R4 3561
4 TraesCS6A01G205000 chr7A 168657496 168658856 1360 False 2281.000000 2281 96.921000 3770 5131 1 chr7A.!!$F1 1361
5 TraesCS6A01G205000 chr7A 293796107 293798511 2404 True 1910.000000 2078 95.384500 3768 6210 2 chr7A.!!$R3 2442
6 TraesCS6A01G205000 chr3A 704171685 704174692 3007 False 5088.000000 5088 97.208000 3769 6774 1 chr3A.!!$F2 3005
7 TraesCS6A01G205000 chr3A 401133552 401135041 1489 True 2289.000000 2289 94.571000 5301 6774 1 chr3A.!!$R4 1473
8 TraesCS6A01G205000 chr3A 170408926 170410078 1152 True 1818.000000 1818 95.017000 1626 2789 1 chr3A.!!$R2 1163
9 TraesCS6A01G205000 chr3A 170431335 170431926 591 True 606.000000 606 85.233000 211 826 1 chr3A.!!$R3 615
10 TraesCS6A01G205000 chrUn 310740777 310743687 2910 False 4957.000000 4957 97.363000 3770 6689 1 chrUn.!!$F2 2919
11 TraesCS6A01G205000 chrUn 77231087 77232594 1507 False 2089.000000 2089 91.672000 2260 3769 1 chrUn.!!$F1 1509
12 TraesCS6A01G205000 chr6D 163424704 163426191 1487 True 2226.000000 2226 93.838000 5301 6774 1 chr6D.!!$R1 1473
13 TraesCS6A01G205000 chr6D 438847038 438850458 3420 False 1907.000000 3655 93.786667 211 3769 3 chr6D.!!$F1 3558
14 TraesCS6A01G205000 chr3D 138015320 138018774 3454 True 2528.000000 3421 91.690500 211 3769 2 chr3D.!!$R2 3558
15 TraesCS6A01G205000 chr3D 378783936 378787384 3448 False 1910.333333 3624 93.617333 203 3769 3 chr3D.!!$F1 3566
16 TraesCS6A01G205000 chr3D 314545259 314548641 3382 True 1833.000000 3572 93.578000 250 3769 3 chr3D.!!$R3 3519
17 TraesCS6A01G205000 chr3D 588694787 588695778 991 True 1546.000000 1546 95.065000 5798 6774 1 chr3D.!!$R1 976
18 TraesCS6A01G205000 chr5B 283499292 283502732 3440 True 1851.000000 3539 92.579667 211 3769 3 chr5B.!!$R1 3558
19 TraesCS6A01G205000 chr2D 280058460 280060215 1755 True 2623.000000 2623 93.528000 1626 3400 1 chr2D.!!$R1 1774
20 TraesCS6A01G205000 chr2D 5130210 5131498 1288 False 2019.000000 2019 94.973000 4018 5305 1 chr2D.!!$F1 1287
21 TraesCS6A01G205000 chr4A 707656085 707657614 1529 True 2543.000000 2543 96.617000 3770 5305 1 chr4A.!!$R1 1535
22 TraesCS6A01G205000 chr1B 451060292 451062822 2530 True 1384.333333 2451 92.754333 435 3110 3 chr1B.!!$R2 2675
23 TraesCS6A01G205000 chr4D 500897730 500899208 1478 False 2316.000000 2316 95.044000 5301 6774 1 chr4D.!!$F3 1473
24 TraesCS6A01G205000 chr4D 500974317 500975798 1481 False 2292.000000 2292 94.709000 5301 6774 1 chr4D.!!$F5 1473
25 TraesCS6A01G205000 chr4D 500935583 500937064 1481 False 2281.000000 2281 94.575000 5301 6774 1 chr4D.!!$F4 1473
26 TraesCS6A01G205000 chr4D 457301630 457302964 1334 False 2017.000000 2017 94.166000 5301 6617 1 chr4D.!!$F2 1316
27 TraesCS6A01G205000 chr2A 559844818 559846365 1547 False 2272.000000 2272 93.325000 3770 5305 1 chr2A.!!$F3 1535
28 TraesCS6A01G205000 chr5D 434386000 434387507 1507 True 2078.000000 2078 91.540000 2260 3769 1 chr5D.!!$R1 1509
29 TraesCS6A01G205000 chr7D 473980592 473981706 1114 True 1679.000000 1679 94.091000 5301 6400 1 chr7D.!!$R1 1099
30 TraesCS6A01G205000 chr5A 565279194 565280592 1398 True 1519.000000 1519 86.285000 210 1649 1 chr5A.!!$R2 1439
31 TraesCS6A01G205000 chr7B 459350511 459351312 801 False 1271.000000 1271 95.280000 4500 5302 1 chr7B.!!$F1 802
32 TraesCS6A01G205000 chr1D 394803772 394804620 848 True 1223.000000 1223 92.614000 759 1611 1 chr1D.!!$R1 852
33 TraesCS6A01G205000 chr3B 729779906 729780755 849 False 1199.000000 1199 92.136000 799 1649 1 chr3B.!!$F1 850
34 TraesCS6A01G205000 chr2B 682687547 682688596 1049 True 739.000000 824 90.452000 215 1379 2 chr2B.!!$R1 1164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.185901 TTTGGCTGGTGGAAAGCTCT 59.814 50.000 0.00 0.0 40.64 4.09 F
151 152 1.064003 TTGGCTGGTGGAAAGCTCTA 58.936 50.000 0.00 0.0 40.64 2.43 F
155 156 1.065126 GCTGGTGGAAAGCTCTATGGT 60.065 52.381 0.00 0.0 37.69 3.55 F
1939 2015 0.330431 AGGAGGAGGAGGAGGAGGAT 60.330 60.000 0.00 0.0 0.00 3.24 F
2736 2814 0.035056 CGGGAGATTCAAAGGGCAGT 60.035 55.000 0.00 0.0 0.00 4.40 F
3976 4059 0.178903 TGGTCACTAGCAACCTCCCT 60.179 55.000 13.64 0.0 36.47 4.20 F
4010 4093 2.741985 CCGCGTGGCAATCTGACA 60.742 61.111 0.00 0.0 29.15 3.58 F
4483 4571 3.069729 GGTGCGGGAATACTCTAGAACAT 59.930 47.826 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1979 0.467290 CCTCCTCCTCTTCCTCCTCG 60.467 65.000 0.00 0.0 0.00 4.63 R
1924 1994 1.076513 GGTCTATCCTCCTCCTCCTCC 59.923 61.905 0.00 0.0 0.00 4.30 R
2062 2138 6.292150 CCTATTAGGATCACTCTTTTGGACC 58.708 44.000 3.41 0.0 37.67 4.46 R
3466 3545 0.397564 TCTGCCTCAACATCACTGCA 59.602 50.000 0.00 0.0 0.00 4.41 R
4023 4106 0.834612 AATCGAATTGGACCGGGCTA 59.165 50.000 7.57 0.0 0.00 3.93 R
5342 5474 0.903942 GAATGATTGCCAAAGCCCCA 59.096 50.000 0.00 0.0 38.69 4.96 R
5771 5903 1.760875 GACCGCACTCCCCCATCTA 60.761 63.158 0.00 0.0 0.00 1.98 R
6459 6611 1.071314 TGGTGGTTTCCATGGGGAGT 61.071 55.000 13.02 0.0 46.01 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.546195 CGAACCTTACTCCTCGTCTG 57.454 55.000 0.00 0.00 0.00 3.51
20 21 2.082231 CGAACCTTACTCCTCGTCTGA 58.918 52.381 0.00 0.00 0.00 3.27
21 22 2.486982 CGAACCTTACTCCTCGTCTGAA 59.513 50.000 0.00 0.00 0.00 3.02
22 23 3.057736 CGAACCTTACTCCTCGTCTGAAA 60.058 47.826 0.00 0.00 0.00 2.69
23 24 4.558095 CGAACCTTACTCCTCGTCTGAAAA 60.558 45.833 0.00 0.00 0.00 2.29
24 25 4.522722 ACCTTACTCCTCGTCTGAAAAG 57.477 45.455 0.00 0.00 0.00 2.27
25 26 3.896272 ACCTTACTCCTCGTCTGAAAAGT 59.104 43.478 0.00 0.00 0.00 2.66
26 27 4.022155 ACCTTACTCCTCGTCTGAAAAGTC 60.022 45.833 0.00 0.00 0.00 3.01
27 28 4.218852 CCTTACTCCTCGTCTGAAAAGTCT 59.781 45.833 0.00 0.00 0.00 3.24
28 29 3.651803 ACTCCTCGTCTGAAAAGTCTG 57.348 47.619 0.00 0.00 0.00 3.51
29 30 2.288518 ACTCCTCGTCTGAAAAGTCTGC 60.289 50.000 0.00 0.00 0.00 4.26
30 31 1.686587 TCCTCGTCTGAAAAGTCTGCA 59.313 47.619 0.00 0.00 0.00 4.41
31 32 2.102420 TCCTCGTCTGAAAAGTCTGCAA 59.898 45.455 0.00 0.00 0.00 4.08
32 33 2.221981 CCTCGTCTGAAAAGTCTGCAAC 59.778 50.000 0.00 0.00 0.00 4.17
33 34 2.866156 CTCGTCTGAAAAGTCTGCAACA 59.134 45.455 0.00 0.00 0.00 3.33
34 35 3.466836 TCGTCTGAAAAGTCTGCAACAT 58.533 40.909 0.00 0.00 0.00 2.71
35 36 4.627058 TCGTCTGAAAAGTCTGCAACATA 58.373 39.130 0.00 0.00 0.00 2.29
36 37 5.053811 TCGTCTGAAAAGTCTGCAACATAA 58.946 37.500 0.00 0.00 0.00 1.90
37 38 5.700832 TCGTCTGAAAAGTCTGCAACATAAT 59.299 36.000 0.00 0.00 0.00 1.28
38 39 6.871492 TCGTCTGAAAAGTCTGCAACATAATA 59.129 34.615 0.00 0.00 0.00 0.98
39 40 6.955963 CGTCTGAAAAGTCTGCAACATAATAC 59.044 38.462 0.00 0.00 0.00 1.89
40 41 6.955963 GTCTGAAAAGTCTGCAACATAATACG 59.044 38.462 0.00 0.00 0.00 3.06
41 42 6.649141 TCTGAAAAGTCTGCAACATAATACGT 59.351 34.615 0.00 0.00 0.00 3.57
42 43 7.172532 TCTGAAAAGTCTGCAACATAATACGTT 59.827 33.333 0.00 0.00 0.00 3.99
43 44 7.075121 TGAAAAGTCTGCAACATAATACGTTG 58.925 34.615 0.00 0.00 45.25 4.10
49 50 3.065019 CAACATAATACGTTGCAGCCC 57.935 47.619 0.00 0.00 37.53 5.19
50 51 2.411628 ACATAATACGTTGCAGCCCA 57.588 45.000 0.00 0.00 0.00 5.36
51 52 2.717390 ACATAATACGTTGCAGCCCAA 58.283 42.857 0.00 0.00 0.00 4.12
52 53 3.085533 ACATAATACGTTGCAGCCCAAA 58.914 40.909 0.00 0.00 34.68 3.28
53 54 3.508012 ACATAATACGTTGCAGCCCAAAA 59.492 39.130 0.00 0.00 34.68 2.44
54 55 4.021894 ACATAATACGTTGCAGCCCAAAAA 60.022 37.500 0.00 0.00 34.68 1.94
55 56 2.432206 ATACGTTGCAGCCCAAAAAC 57.568 45.000 0.00 0.00 34.68 2.43
56 57 3.611697 CGTTGCAGCCCAAAAACG 58.388 55.556 1.06 1.06 39.35 3.60
57 58 1.948635 CGTTGCAGCCCAAAAACGG 60.949 57.895 6.99 0.00 41.16 4.44
63 64 4.336581 GCCCAAAAACGGCTCAAC 57.663 55.556 0.00 0.00 43.48 3.18
64 65 1.439644 GCCCAAAAACGGCTCAACA 59.560 52.632 0.00 0.00 43.48 3.33
65 66 0.874175 GCCCAAAAACGGCTCAACAC 60.874 55.000 0.00 0.00 43.48 3.32
66 67 0.457851 CCCAAAAACGGCTCAACACA 59.542 50.000 0.00 0.00 0.00 3.72
67 68 1.068434 CCCAAAAACGGCTCAACACAT 59.932 47.619 0.00 0.00 0.00 3.21
68 69 2.126467 CCAAAAACGGCTCAACACATG 58.874 47.619 0.00 0.00 0.00 3.21
69 70 2.126467 CAAAAACGGCTCAACACATGG 58.874 47.619 0.00 0.00 0.00 3.66
70 71 1.686355 AAAACGGCTCAACACATGGA 58.314 45.000 0.00 0.00 0.00 3.41
71 72 1.686355 AAACGGCTCAACACATGGAA 58.314 45.000 0.00 0.00 0.00 3.53
72 73 1.909700 AACGGCTCAACACATGGAAT 58.090 45.000 0.00 0.00 0.00 3.01
73 74 2.779755 ACGGCTCAACACATGGAATA 57.220 45.000 0.00 0.00 0.00 1.75
74 75 3.281727 ACGGCTCAACACATGGAATAT 57.718 42.857 0.00 0.00 0.00 1.28
75 76 2.945008 ACGGCTCAACACATGGAATATG 59.055 45.455 0.00 0.00 0.00 1.78
76 77 2.287188 CGGCTCAACACATGGAATATGC 60.287 50.000 0.00 0.00 0.00 3.14
77 78 2.954318 GGCTCAACACATGGAATATGCT 59.046 45.455 0.00 0.00 0.00 3.79
78 79 3.243301 GGCTCAACACATGGAATATGCTG 60.243 47.826 0.00 0.00 0.00 4.41
79 80 3.243301 GCTCAACACATGGAATATGCTGG 60.243 47.826 0.00 0.00 0.00 4.85
80 81 2.689471 TCAACACATGGAATATGCTGGC 59.311 45.455 0.00 0.00 0.00 4.85
81 82 2.427812 CAACACATGGAATATGCTGGCA 59.572 45.455 0.00 0.00 0.00 4.92
82 83 2.737544 ACACATGGAATATGCTGGCAA 58.262 42.857 0.00 0.00 0.00 4.52
83 84 3.302161 ACACATGGAATATGCTGGCAAT 58.698 40.909 0.00 0.00 0.00 3.56
84 85 4.472496 ACACATGGAATATGCTGGCAATA 58.528 39.130 0.00 0.00 0.00 1.90
85 86 5.081728 ACACATGGAATATGCTGGCAATAT 58.918 37.500 0.00 0.00 0.00 1.28
86 87 6.247676 ACACATGGAATATGCTGGCAATATA 58.752 36.000 0.00 0.00 0.00 0.86
87 88 6.720748 ACACATGGAATATGCTGGCAATATAA 59.279 34.615 0.00 0.00 0.00 0.98
88 89 7.031372 CACATGGAATATGCTGGCAATATAAC 58.969 38.462 0.00 0.00 0.00 1.89
89 90 6.720748 ACATGGAATATGCTGGCAATATAACA 59.279 34.615 0.00 0.00 0.00 2.41
90 91 6.573664 TGGAATATGCTGGCAATATAACAC 57.426 37.500 0.00 0.00 0.00 3.32
91 92 6.067350 TGGAATATGCTGGCAATATAACACA 58.933 36.000 0.00 0.00 0.00 3.72
92 93 6.207221 TGGAATATGCTGGCAATATAACACAG 59.793 38.462 0.00 0.00 0.00 3.66
93 94 6.207417 GGAATATGCTGGCAATATAACACAGT 59.793 38.462 0.00 0.00 0.00 3.55
94 95 7.390440 GGAATATGCTGGCAATATAACACAGTA 59.610 37.037 0.00 0.00 0.00 2.74
95 96 7.912056 ATATGCTGGCAATATAACACAGTAG 57.088 36.000 0.00 0.00 0.00 2.57
96 97 5.351948 TGCTGGCAATATAACACAGTAGA 57.648 39.130 0.00 0.00 0.00 2.59
97 98 5.359756 TGCTGGCAATATAACACAGTAGAG 58.640 41.667 0.00 0.00 0.00 2.43
98 99 4.212214 GCTGGCAATATAACACAGTAGAGC 59.788 45.833 0.00 0.00 0.00 4.09
99 100 5.351948 TGGCAATATAACACAGTAGAGCA 57.648 39.130 0.00 0.00 0.00 4.26
100 101 5.739959 TGGCAATATAACACAGTAGAGCAA 58.260 37.500 0.00 0.00 0.00 3.91
101 102 5.817296 TGGCAATATAACACAGTAGAGCAAG 59.183 40.000 0.00 0.00 0.00 4.01
102 103 6.049149 GGCAATATAACACAGTAGAGCAAGA 58.951 40.000 0.00 0.00 0.00 3.02
103 104 6.538742 GGCAATATAACACAGTAGAGCAAGAA 59.461 38.462 0.00 0.00 0.00 2.52
104 105 7.402640 GCAATATAACACAGTAGAGCAAGAAC 58.597 38.462 0.00 0.00 0.00 3.01
105 106 7.278868 GCAATATAACACAGTAGAGCAAGAACT 59.721 37.037 0.00 0.00 0.00 3.01
106 107 8.598924 CAATATAACACAGTAGAGCAAGAACTG 58.401 37.037 6.89 6.89 44.89 3.16
107 108 4.672587 AACACAGTAGAGCAAGAACTGA 57.327 40.909 13.34 0.00 42.59 3.41
108 109 4.672587 ACACAGTAGAGCAAGAACTGAA 57.327 40.909 13.34 0.00 42.59 3.02
109 110 5.220710 ACACAGTAGAGCAAGAACTGAAT 57.779 39.130 13.34 1.40 42.59 2.57
110 111 6.346477 ACACAGTAGAGCAAGAACTGAATA 57.654 37.500 13.34 0.00 42.59 1.75
111 112 6.759272 ACACAGTAGAGCAAGAACTGAATAA 58.241 36.000 13.34 0.00 42.59 1.40
112 113 7.390027 ACACAGTAGAGCAAGAACTGAATAAT 58.610 34.615 13.34 0.00 42.59 1.28
113 114 7.332926 ACACAGTAGAGCAAGAACTGAATAATG 59.667 37.037 13.34 5.49 42.59 1.90
114 115 6.314896 ACAGTAGAGCAAGAACTGAATAATGC 59.685 38.462 13.34 0.00 42.59 3.56
115 116 6.538021 CAGTAGAGCAAGAACTGAATAATGCT 59.462 38.462 0.00 0.00 45.98 3.79
116 117 7.708322 CAGTAGAGCAAGAACTGAATAATGCTA 59.292 37.037 0.00 0.00 43.59 3.49
117 118 8.428063 AGTAGAGCAAGAACTGAATAATGCTAT 58.572 33.333 0.00 0.00 43.59 2.97
118 119 7.727331 AGAGCAAGAACTGAATAATGCTATC 57.273 36.000 0.00 0.00 43.59 2.08
119 120 7.278135 AGAGCAAGAACTGAATAATGCTATCA 58.722 34.615 0.00 0.00 43.59 2.15
120 121 7.226325 AGAGCAAGAACTGAATAATGCTATCAC 59.774 37.037 0.00 0.00 43.59 3.06
121 122 7.052873 AGCAAGAACTGAATAATGCTATCACT 58.947 34.615 0.00 0.00 41.92 3.41
122 123 8.206867 AGCAAGAACTGAATAATGCTATCACTA 58.793 33.333 0.00 0.00 41.92 2.74
123 124 8.279103 GCAAGAACTGAATAATGCTATCACTAC 58.721 37.037 0.00 0.00 0.00 2.73
124 125 9.317936 CAAGAACTGAATAATGCTATCACTACA 57.682 33.333 0.00 0.00 0.00 2.74
126 127 9.486497 AGAACTGAATAATGCTATCACTACATG 57.514 33.333 0.00 0.00 0.00 3.21
127 128 7.664082 ACTGAATAATGCTATCACTACATGC 57.336 36.000 0.00 0.00 0.00 4.06
128 129 7.219322 ACTGAATAATGCTATCACTACATGCA 58.781 34.615 0.00 0.00 38.05 3.96
129 130 7.881751 ACTGAATAATGCTATCACTACATGCAT 59.118 33.333 0.00 0.00 44.86 3.96
130 131 9.374838 CTGAATAATGCTATCACTACATGCATA 57.625 33.333 0.00 0.00 42.57 3.14
131 132 9.895138 TGAATAATGCTATCACTACATGCATAT 57.105 29.630 0.00 0.00 42.57 1.78
135 136 6.806388 TGCTATCACTACATGCATATTTGG 57.194 37.500 0.00 0.00 0.00 3.28
136 137 5.181811 TGCTATCACTACATGCATATTTGGC 59.818 40.000 0.00 0.00 0.00 4.52
137 138 5.413833 GCTATCACTACATGCATATTTGGCT 59.586 40.000 0.00 0.00 0.00 4.75
138 139 5.700722 ATCACTACATGCATATTTGGCTG 57.299 39.130 0.00 0.00 0.00 4.85
139 140 3.884693 TCACTACATGCATATTTGGCTGG 59.115 43.478 0.00 0.00 0.00 4.85
140 141 3.633525 CACTACATGCATATTTGGCTGGT 59.366 43.478 0.00 0.00 0.00 4.00
141 142 3.633525 ACTACATGCATATTTGGCTGGTG 59.366 43.478 0.00 0.00 0.00 4.17
142 143 1.758280 ACATGCATATTTGGCTGGTGG 59.242 47.619 0.00 0.00 0.00 4.61
143 144 2.033372 CATGCATATTTGGCTGGTGGA 58.967 47.619 0.00 0.00 0.00 4.02
144 145 2.228545 TGCATATTTGGCTGGTGGAA 57.771 45.000 0.00 0.00 0.00 3.53
145 146 2.533916 TGCATATTTGGCTGGTGGAAA 58.466 42.857 0.00 0.00 0.00 3.13
146 147 2.496871 TGCATATTTGGCTGGTGGAAAG 59.503 45.455 0.00 0.00 0.00 2.62
147 148 2.739609 GCATATTTGGCTGGTGGAAAGC 60.740 50.000 0.00 0.00 40.06 3.51
148 149 2.603075 TATTTGGCTGGTGGAAAGCT 57.397 45.000 0.00 0.00 40.64 3.74
149 150 1.260544 ATTTGGCTGGTGGAAAGCTC 58.739 50.000 0.00 0.00 40.64 4.09
150 151 0.185901 TTTGGCTGGTGGAAAGCTCT 59.814 50.000 0.00 0.00 40.64 4.09
151 152 1.064003 TTGGCTGGTGGAAAGCTCTA 58.936 50.000 0.00 0.00 40.64 2.43
152 153 1.289160 TGGCTGGTGGAAAGCTCTAT 58.711 50.000 0.00 0.00 40.64 1.98
153 154 1.065199 TGGCTGGTGGAAAGCTCTATG 60.065 52.381 0.00 0.00 40.64 2.23
154 155 1.673168 GCTGGTGGAAAGCTCTATGG 58.327 55.000 0.00 0.00 37.69 2.74
155 156 1.065126 GCTGGTGGAAAGCTCTATGGT 60.065 52.381 0.00 0.00 37.69 3.55
156 157 2.619074 GCTGGTGGAAAGCTCTATGGTT 60.619 50.000 0.00 0.00 37.69 3.67
157 158 3.370527 GCTGGTGGAAAGCTCTATGGTTA 60.371 47.826 0.00 0.00 37.69 2.85
158 159 4.843728 CTGGTGGAAAGCTCTATGGTTAA 58.156 43.478 0.00 0.00 35.02 2.01
159 160 5.249780 TGGTGGAAAGCTCTATGGTTAAA 57.750 39.130 0.00 0.00 35.02 1.52
160 161 5.253330 TGGTGGAAAGCTCTATGGTTAAAG 58.747 41.667 0.00 0.00 35.02 1.85
161 162 5.222048 TGGTGGAAAGCTCTATGGTTAAAGT 60.222 40.000 0.00 0.00 35.02 2.66
162 163 5.710567 GGTGGAAAGCTCTATGGTTAAAGTT 59.289 40.000 0.00 0.00 35.02 2.66
163 164 6.208797 GGTGGAAAGCTCTATGGTTAAAGTTT 59.791 38.462 0.00 0.00 35.02 2.66
164 165 7.255836 GGTGGAAAGCTCTATGGTTAAAGTTTT 60.256 37.037 0.00 0.00 35.02 2.43
165 166 7.595130 GTGGAAAGCTCTATGGTTAAAGTTTTG 59.405 37.037 0.00 0.00 35.02 2.44
166 167 6.586463 GGAAAGCTCTATGGTTAAAGTTTTGC 59.414 38.462 0.00 0.00 35.02 3.68
167 168 5.296813 AGCTCTATGGTTAAAGTTTTGCG 57.703 39.130 0.00 0.00 0.00 4.85
168 169 5.001232 AGCTCTATGGTTAAAGTTTTGCGA 58.999 37.500 0.00 0.00 0.00 5.10
169 170 5.472137 AGCTCTATGGTTAAAGTTTTGCGAA 59.528 36.000 0.00 0.00 0.00 4.70
170 171 6.016610 AGCTCTATGGTTAAAGTTTTGCGAAA 60.017 34.615 0.00 0.00 0.00 3.46
171 172 6.639279 GCTCTATGGTTAAAGTTTTGCGAAAA 59.361 34.615 0.00 0.00 0.00 2.29
172 173 7.148967 GCTCTATGGTTAAAGTTTTGCGAAAAG 60.149 37.037 0.00 0.00 0.00 2.27
185 186 2.766313 GCGAAAAGCCAATTTTTCCCT 58.234 42.857 5.85 0.00 41.24 4.20
186 187 3.920446 GCGAAAAGCCAATTTTTCCCTA 58.080 40.909 5.85 0.00 41.24 3.53
187 188 3.678072 GCGAAAAGCCAATTTTTCCCTAC 59.322 43.478 5.85 0.00 41.24 3.18
188 189 4.560716 GCGAAAAGCCAATTTTTCCCTACT 60.561 41.667 5.85 0.00 41.24 2.57
189 190 4.923281 CGAAAAGCCAATTTTTCCCTACTG 59.077 41.667 5.85 0.00 41.24 2.74
190 191 3.961480 AAGCCAATTTTTCCCTACTGC 57.039 42.857 0.00 0.00 0.00 4.40
191 192 2.888212 AGCCAATTTTTCCCTACTGCA 58.112 42.857 0.00 0.00 0.00 4.41
192 193 3.238597 AGCCAATTTTTCCCTACTGCAA 58.761 40.909 0.00 0.00 0.00 4.08
193 194 3.645687 AGCCAATTTTTCCCTACTGCAAA 59.354 39.130 0.00 0.00 0.00 3.68
194 195 3.996363 GCCAATTTTTCCCTACTGCAAAG 59.004 43.478 0.00 0.00 0.00 2.77
195 196 4.568956 CCAATTTTTCCCTACTGCAAAGG 58.431 43.478 7.65 7.65 0.00 3.11
196 197 4.283212 CCAATTTTTCCCTACTGCAAAGGA 59.717 41.667 14.94 3.27 36.08 3.36
197 198 5.221621 CCAATTTTTCCCTACTGCAAAGGAA 60.222 40.000 14.94 8.89 36.08 3.36
198 199 6.466812 CAATTTTTCCCTACTGCAAAGGAAT 58.533 36.000 14.94 5.32 38.17 3.01
199 200 7.310361 CCAATTTTTCCCTACTGCAAAGGAATA 60.310 37.037 14.94 4.95 38.17 1.75
200 201 7.978099 ATTTTTCCCTACTGCAAAGGAATAT 57.022 32.000 14.94 6.30 38.17 1.28
201 202 9.487442 AATTTTTCCCTACTGCAAAGGAATATA 57.513 29.630 14.94 2.35 38.17 0.86
202 203 9.660544 ATTTTTCCCTACTGCAAAGGAATATAT 57.339 29.630 14.94 4.13 38.17 0.86
203 204 9.487442 TTTTTCCCTACTGCAAAGGAATATATT 57.513 29.630 14.94 0.00 38.17 1.28
204 205 9.487442 TTTTCCCTACTGCAAAGGAATATATTT 57.513 29.630 14.94 0.00 38.17 1.40
205 206 9.487442 TTTCCCTACTGCAAAGGAATATATTTT 57.513 29.630 14.94 0.00 38.17 1.82
213 214 9.492973 CTGCAAAGGAATATATTTTATTTGGGG 57.507 33.333 20.70 7.27 0.00 4.96
229 230 5.622346 TTTGGGGTTTTATCACTTTTGCT 57.378 34.783 0.00 0.00 0.00 3.91
233 234 5.836358 TGGGGTTTTATCACTTTTGCTACTT 59.164 36.000 0.00 0.00 0.00 2.24
255 256 2.943033 GTTGTGCCACACTACTCACTTT 59.057 45.455 0.00 0.00 37.20 2.66
280 281 6.338214 TGCCATTAAAATGTTTCACTGCTA 57.662 33.333 2.25 0.00 34.60 3.49
374 377 3.196685 TCATTGACCACGTGATATGACCA 59.803 43.478 19.30 0.00 0.00 4.02
427 430 7.206981 CTCATTTGTAAAGAGCAGGAAAAGA 57.793 36.000 0.00 0.00 0.00 2.52
428 431 7.581213 TCATTTGTAAAGAGCAGGAAAAGAA 57.419 32.000 0.00 0.00 0.00 2.52
429 432 8.006298 TCATTTGTAAAGAGCAGGAAAAGAAA 57.994 30.769 0.00 0.00 0.00 2.52
430 433 8.474025 TCATTTGTAAAGAGCAGGAAAAGAAAA 58.526 29.630 0.00 0.00 0.00 2.29
431 434 8.758715 CATTTGTAAAGAGCAGGAAAAGAAAAG 58.241 33.333 0.00 0.00 0.00 2.27
432 435 5.831997 TGTAAAGAGCAGGAAAAGAAAAGC 58.168 37.500 0.00 0.00 0.00 3.51
449 454 4.590850 AAAGCGAGCAGGAAAAGAAAAT 57.409 36.364 0.00 0.00 0.00 1.82
481 487 4.587189 GGGGGATCGAACCTCGCG 62.587 72.222 11.90 0.00 40.21 5.87
513 519 2.960129 GGCTAATACACGCGCGCT 60.960 61.111 32.58 18.29 0.00 5.92
609 617 7.664318 TGACCTGACTAAGCTATCGATTATACA 59.336 37.037 1.71 0.00 0.00 2.29
626 634 8.504005 CGATTATACAAATCCTATCACCAAACC 58.496 37.037 0.00 0.00 0.00 3.27
714 725 3.840594 CCATTCGGGTACGGCCGA 61.841 66.667 35.90 13.31 41.39 5.54
739 750 4.135153 CGCGGCCTACACAGCTCT 62.135 66.667 0.00 0.00 0.00 4.09
740 751 2.510238 GCGGCCTACACAGCTCTG 60.510 66.667 0.00 0.00 0.00 3.35
741 752 2.185350 CGGCCTACACAGCTCTGG 59.815 66.667 0.00 0.00 34.19 3.86
742 753 2.124942 GGCCTACACAGCTCTGGC 60.125 66.667 0.00 0.00 42.56 4.85
743 754 2.510238 GCCTACACAGCTCTGGCG 60.510 66.667 1.66 0.00 44.37 5.69
744 755 2.510238 CCTACACAGCTCTGGCGC 60.510 66.667 0.00 0.00 44.37 6.53
745 756 2.882777 CTACACAGCTCTGGCGCG 60.883 66.667 0.00 0.00 44.37 6.86
746 757 4.435436 TACACAGCTCTGGCGCGG 62.435 66.667 8.83 0.00 44.37 6.46
937 1006 1.651240 GCAGCATCGCCACATGACTT 61.651 55.000 0.00 0.00 0.00 3.01
1090 1160 5.983720 GTCGCAACCTCTAATATTCTAGCAA 59.016 40.000 0.00 0.00 0.00 3.91
1134 1204 4.143030 GGATGATGCGTGTGTATTCATAGC 60.143 45.833 0.00 0.00 0.00 2.97
1194 1264 9.203421 CATAGTGACTAACTACACACAATTTGA 57.797 33.333 2.79 0.00 44.20 2.69
1247 1317 3.077359 GGAAACTGCTTGTATGCTGTCT 58.923 45.455 0.00 0.00 42.73 3.41
1398 1468 2.124695 GGGGGTGCCGTGATTCTC 60.125 66.667 0.00 0.00 0.00 2.87
1415 1485 7.415765 CGTGATTCTCTGGAGTTGAAGTACTAT 60.416 40.741 0.00 0.00 0.00 2.12
1482 1552 3.132646 TGCAGCTTTGATGTTTGGAAAGT 59.867 39.130 0.00 0.00 0.00 2.66
1724 1794 6.611236 TGATGATCCTAACAGAGACATAACCA 59.389 38.462 0.00 0.00 0.00 3.67
1898 1968 8.593945 AGAGAAAGAAGAGAATAGAGACATGT 57.406 34.615 0.00 0.00 0.00 3.21
1909 1979 9.724839 GAGAATAGAGACATGTGTTTAGTAGAC 57.275 37.037 1.15 0.00 0.00 2.59
1922 1992 2.721425 AGTAGACGAGGAGGAAGAGG 57.279 55.000 0.00 0.00 0.00 3.69
1923 1993 2.198336 AGTAGACGAGGAGGAAGAGGA 58.802 52.381 0.00 0.00 0.00 3.71
1924 1994 2.171870 AGTAGACGAGGAGGAAGAGGAG 59.828 54.545 0.00 0.00 0.00 3.69
1939 2015 0.330431 AGGAGGAGGAGGAGGAGGAT 60.330 60.000 0.00 0.00 0.00 3.24
2212 2288 6.553100 TGATTTGATTGGTGTACCCTTTCTTT 59.447 34.615 0.00 0.00 34.29 2.52
2312 2390 3.330267 CCCAACTAAGCTGAGAAGTGAC 58.670 50.000 4.63 0.00 0.00 3.67
2365 2443 4.006319 GCTGATGTTATCCTAGATTGGGC 58.994 47.826 0.00 0.00 0.00 5.36
2508 2586 6.488715 AGTGGAAAATGGAAAGATAGCTTCT 58.511 36.000 0.00 0.00 35.70 2.85
2629 2707 4.289672 AGTCAGGGAGAAGGAATGCTTTAA 59.710 41.667 0.00 0.00 0.00 1.52
2636 2714 5.815222 GGAGAAGGAATGCTTTAAGAGAGTC 59.185 44.000 0.00 0.00 0.00 3.36
2685 2763 3.265995 AGGGTTTTTAGATGGGTGTCGAT 59.734 43.478 0.00 0.00 0.00 3.59
2736 2814 0.035056 CGGGAGATTCAAAGGGCAGT 60.035 55.000 0.00 0.00 0.00 4.40
2737 2815 1.467920 GGGAGATTCAAAGGGCAGTG 58.532 55.000 0.00 0.00 0.00 3.66
3074 3153 3.748083 TGGCATATGAAGCAGATCCTTC 58.252 45.455 6.97 5.12 41.21 3.46
3124 3203 4.216257 GCTGAACACCACACAAAGATATGT 59.784 41.667 0.00 0.00 0.00 2.29
3179 3258 5.456548 TGACTACGTCAATAACAACCTCA 57.543 39.130 0.00 0.00 39.78 3.86
3305 3384 7.449704 GGATGAGGATAGCATTAGAAAAATGGT 59.550 37.037 7.48 7.48 40.85 3.55
3466 3545 8.919145 CAGGACTAAAGATGAAGGTAGTTAGAT 58.081 37.037 0.00 0.00 0.00 1.98
3526 3606 6.910259 AAGAAAATAGGGAATGGAGTACCT 57.090 37.500 0.00 0.00 37.04 3.08
3637 3717 7.159372 TCACTAAGAGGTCTGGTATCAAAAAC 58.841 38.462 0.00 0.00 0.00 2.43
3680 3760 8.677148 AGTTCTACTCAGTAGCAAAATTCAAA 57.323 30.769 7.01 0.00 36.22 2.69
3741 3822 3.303938 AACAATGGGACATTGTTGACCA 58.696 40.909 29.08 10.08 46.67 4.02
3918 4001 4.065088 CGACCTTTCTTCTGAAATGGTCA 58.935 43.478 23.22 0.00 46.39 4.02
3945 4028 6.160664 ACGTTTATGACCAAAATACGTCTG 57.839 37.500 0.00 0.00 36.14 3.51
3976 4059 0.178903 TGGTCACTAGCAACCTCCCT 60.179 55.000 13.64 0.00 36.47 4.20
4010 4093 2.741985 CCGCGTGGCAATCTGACA 60.742 61.111 0.00 0.00 29.15 3.58
4416 4504 9.507280 CACATTCTACAAATTTCCATCACATAC 57.493 33.333 0.00 0.00 0.00 2.39
4483 4571 3.069729 GGTGCGGGAATACTCTAGAACAT 59.930 47.826 0.00 0.00 0.00 2.71
4541 4629 8.596271 TCACGACAAGAAAACATTGTAATCTA 57.404 30.769 5.09 0.00 40.86 1.98
4733 4824 8.687242 TCTACTTATCTGGAATAGGCATATTCG 58.313 37.037 21.22 11.17 45.62 3.34
5533 5665 6.594744 TGACATATGTAGCATCAAGGAACAT 58.405 36.000 8.71 0.00 35.16 2.71
5790 5922 2.523740 TAGATGGGGGAGTGCGGTCA 62.524 60.000 0.00 0.00 0.00 4.02
5791 5923 2.933287 ATGGGGGAGTGCGGTCAA 60.933 61.111 0.00 0.00 0.00 3.18
5804 5936 0.673644 CGGTCAAAGATGGCGGAACT 60.674 55.000 0.00 0.00 33.67 3.01
6126 6259 7.495606 CACATCAGAAATGCTAGGTACATGTTA 59.504 37.037 2.30 0.00 0.00 2.41
6308 6443 1.590932 CAATCAGGCTATCGCTGCTT 58.409 50.000 0.00 0.00 36.09 3.91
6459 6611 3.282021 GCCTCCTTACATTGCAGATCAA 58.718 45.455 0.00 0.00 39.32 2.57
6601 6753 4.403752 TCAGAGATTGACCGACATTCTGAT 59.596 41.667 10.12 0.50 38.71 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.896272 ACTTTTCAGACGAGGAGTAAGGT 59.104 43.478 0.00 0.00 0.00 3.50
5 6 5.157781 CAGACTTTTCAGACGAGGAGTAAG 58.842 45.833 0.00 0.00 0.00 2.34
12 13 2.866156 TGTTGCAGACTTTTCAGACGAG 59.134 45.455 0.00 0.00 0.00 4.18
13 14 2.899976 TGTTGCAGACTTTTCAGACGA 58.100 42.857 0.00 0.00 0.00 4.20
14 15 3.885484 ATGTTGCAGACTTTTCAGACG 57.115 42.857 0.00 0.00 0.00 4.18
15 16 6.955963 CGTATTATGTTGCAGACTTTTCAGAC 59.044 38.462 0.00 0.00 0.00 3.51
16 17 6.649141 ACGTATTATGTTGCAGACTTTTCAGA 59.351 34.615 0.00 0.00 0.00 3.27
17 18 6.831769 ACGTATTATGTTGCAGACTTTTCAG 58.168 36.000 0.00 0.00 0.00 3.02
18 19 6.795098 ACGTATTATGTTGCAGACTTTTCA 57.205 33.333 0.00 0.00 0.00 2.69
19 20 7.479070 CAACGTATTATGTTGCAGACTTTTC 57.521 36.000 14.17 0.00 38.15 2.29
29 30 2.421775 TGGGCTGCAACGTATTATGTTG 59.578 45.455 19.90 19.90 45.40 3.33
30 31 2.717390 TGGGCTGCAACGTATTATGTT 58.283 42.857 0.50 0.00 0.00 2.71
31 32 2.411628 TGGGCTGCAACGTATTATGT 57.588 45.000 0.50 0.00 0.00 2.29
32 33 3.773860 TTTGGGCTGCAACGTATTATG 57.226 42.857 0.50 0.00 0.00 1.90
33 34 4.490743 GTTTTTGGGCTGCAACGTATTAT 58.509 39.130 0.50 0.00 0.00 1.28
34 35 3.609644 CGTTTTTGGGCTGCAACGTATTA 60.610 43.478 12.32 0.00 37.75 0.98
35 36 2.749776 GTTTTTGGGCTGCAACGTATT 58.250 42.857 0.50 0.00 0.00 1.89
36 37 1.335506 CGTTTTTGGGCTGCAACGTAT 60.336 47.619 12.32 0.00 37.75 3.06
37 38 0.029567 CGTTTTTGGGCTGCAACGTA 59.970 50.000 12.32 0.00 37.75 3.57
38 39 1.226831 CGTTTTTGGGCTGCAACGT 60.227 52.632 12.32 0.00 37.75 3.99
39 40 1.948635 CCGTTTTTGGGCTGCAACG 60.949 57.895 13.25 13.25 41.31 4.10
40 41 4.026226 CCGTTTTTGGGCTGCAAC 57.974 55.556 0.50 0.00 0.00 4.17
47 48 0.457851 TGTGTTGAGCCGTTTTTGGG 59.542 50.000 0.00 0.00 0.00 4.12
48 49 2.126467 CATGTGTTGAGCCGTTTTTGG 58.874 47.619 0.00 0.00 0.00 3.28
49 50 2.126467 CCATGTGTTGAGCCGTTTTTG 58.874 47.619 0.00 0.00 0.00 2.44
50 51 2.028130 TCCATGTGTTGAGCCGTTTTT 58.972 42.857 0.00 0.00 0.00 1.94
51 52 1.686355 TCCATGTGTTGAGCCGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
52 53 1.686355 TTCCATGTGTTGAGCCGTTT 58.314 45.000 0.00 0.00 0.00 3.60
53 54 1.909700 ATTCCATGTGTTGAGCCGTT 58.090 45.000 0.00 0.00 0.00 4.44
54 55 2.779755 TATTCCATGTGTTGAGCCGT 57.220 45.000 0.00 0.00 0.00 5.68
55 56 2.287188 GCATATTCCATGTGTTGAGCCG 60.287 50.000 0.00 0.00 0.00 5.52
56 57 2.954318 AGCATATTCCATGTGTTGAGCC 59.046 45.455 0.00 0.00 0.00 4.70
57 58 3.243301 CCAGCATATTCCATGTGTTGAGC 60.243 47.826 0.00 0.00 35.24 4.26
58 59 3.243301 GCCAGCATATTCCATGTGTTGAG 60.243 47.826 0.00 0.00 35.24 3.02
59 60 2.689471 GCCAGCATATTCCATGTGTTGA 59.311 45.455 0.00 0.00 35.24 3.18
60 61 2.427812 TGCCAGCATATTCCATGTGTTG 59.572 45.455 0.00 0.00 33.56 3.33
61 62 2.737544 TGCCAGCATATTCCATGTGTT 58.262 42.857 0.00 0.00 0.00 3.32
62 63 2.440517 TGCCAGCATATTCCATGTGT 57.559 45.000 0.00 0.00 0.00 3.72
63 64 5.654603 ATATTGCCAGCATATTCCATGTG 57.345 39.130 0.00 0.00 0.00 3.21
64 65 6.720748 TGTTATATTGCCAGCATATTCCATGT 59.279 34.615 0.00 0.00 0.00 3.21
65 66 7.031372 GTGTTATATTGCCAGCATATTCCATG 58.969 38.462 0.00 0.00 0.00 3.66
66 67 6.720748 TGTGTTATATTGCCAGCATATTCCAT 59.279 34.615 0.00 0.00 0.00 3.41
67 68 6.067350 TGTGTTATATTGCCAGCATATTCCA 58.933 36.000 0.00 0.00 0.00 3.53
68 69 6.207417 ACTGTGTTATATTGCCAGCATATTCC 59.793 38.462 0.00 0.00 0.00 3.01
69 70 7.206981 ACTGTGTTATATTGCCAGCATATTC 57.793 36.000 0.00 0.00 0.00 1.75
70 71 8.156820 TCTACTGTGTTATATTGCCAGCATATT 58.843 33.333 0.00 0.00 0.00 1.28
71 72 7.679783 TCTACTGTGTTATATTGCCAGCATAT 58.320 34.615 0.00 0.00 0.00 1.78
72 73 7.061566 TCTACTGTGTTATATTGCCAGCATA 57.938 36.000 0.00 0.00 0.00 3.14
73 74 5.928976 TCTACTGTGTTATATTGCCAGCAT 58.071 37.500 0.00 0.00 0.00 3.79
74 75 5.351948 TCTACTGTGTTATATTGCCAGCA 57.648 39.130 0.00 0.00 0.00 4.41
75 76 4.212214 GCTCTACTGTGTTATATTGCCAGC 59.788 45.833 0.00 0.00 0.00 4.85
76 77 5.359756 TGCTCTACTGTGTTATATTGCCAG 58.640 41.667 0.00 0.00 0.00 4.85
77 78 5.351948 TGCTCTACTGTGTTATATTGCCA 57.648 39.130 0.00 0.00 0.00 4.92
78 79 6.049149 TCTTGCTCTACTGTGTTATATTGCC 58.951 40.000 0.00 0.00 0.00 4.52
79 80 7.278868 AGTTCTTGCTCTACTGTGTTATATTGC 59.721 37.037 0.00 0.00 0.00 3.56
80 81 8.598924 CAGTTCTTGCTCTACTGTGTTATATTG 58.401 37.037 0.00 0.00 35.65 1.90
81 82 8.531982 TCAGTTCTTGCTCTACTGTGTTATATT 58.468 33.333 0.00 0.00 40.08 1.28
82 83 8.067751 TCAGTTCTTGCTCTACTGTGTTATAT 57.932 34.615 0.00 0.00 40.08 0.86
83 84 7.462571 TCAGTTCTTGCTCTACTGTGTTATA 57.537 36.000 0.00 0.00 40.08 0.98
84 85 6.346477 TCAGTTCTTGCTCTACTGTGTTAT 57.654 37.500 0.00 0.00 40.08 1.89
85 86 5.784578 TCAGTTCTTGCTCTACTGTGTTA 57.215 39.130 0.00 0.00 40.08 2.41
86 87 4.672587 TCAGTTCTTGCTCTACTGTGTT 57.327 40.909 0.00 0.00 40.08 3.32
87 88 4.672587 TTCAGTTCTTGCTCTACTGTGT 57.327 40.909 0.00 0.00 40.08 3.72
88 89 7.675870 GCATTATTCAGTTCTTGCTCTACTGTG 60.676 40.741 0.00 0.00 40.08 3.66
89 90 6.314896 GCATTATTCAGTTCTTGCTCTACTGT 59.685 38.462 0.00 0.00 40.08 3.55
90 91 6.538021 AGCATTATTCAGTTCTTGCTCTACTG 59.462 38.462 0.00 0.00 35.66 2.74
91 92 6.648192 AGCATTATTCAGTTCTTGCTCTACT 58.352 36.000 0.00 0.00 35.66 2.57
92 93 6.917217 AGCATTATTCAGTTCTTGCTCTAC 57.083 37.500 0.00 0.00 35.66 2.59
93 94 8.424133 TGATAGCATTATTCAGTTCTTGCTCTA 58.576 33.333 0.00 0.00 40.60 2.43
94 95 7.226325 GTGATAGCATTATTCAGTTCTTGCTCT 59.774 37.037 0.00 0.00 40.60 4.09
95 96 7.226325 AGTGATAGCATTATTCAGTTCTTGCTC 59.774 37.037 0.00 0.00 40.60 4.26
96 97 7.052873 AGTGATAGCATTATTCAGTTCTTGCT 58.947 34.615 0.00 0.00 42.59 3.91
97 98 7.256756 AGTGATAGCATTATTCAGTTCTTGC 57.743 36.000 0.00 0.00 0.00 4.01
98 99 9.317936 TGTAGTGATAGCATTATTCAGTTCTTG 57.682 33.333 0.00 0.00 0.00 3.02
100 101 9.486497 CATGTAGTGATAGCATTATTCAGTTCT 57.514 33.333 0.00 0.00 0.00 3.01
101 102 8.226448 GCATGTAGTGATAGCATTATTCAGTTC 58.774 37.037 0.00 0.00 0.00 3.01
102 103 7.716560 TGCATGTAGTGATAGCATTATTCAGTT 59.283 33.333 0.00 0.00 0.00 3.16
103 104 7.219322 TGCATGTAGTGATAGCATTATTCAGT 58.781 34.615 0.00 0.00 0.00 3.41
104 105 7.662604 TGCATGTAGTGATAGCATTATTCAG 57.337 36.000 0.00 0.00 0.00 3.02
105 106 9.895138 ATATGCATGTAGTGATAGCATTATTCA 57.105 29.630 10.16 0.00 42.76 2.57
109 110 8.949177 CCAAATATGCATGTAGTGATAGCATTA 58.051 33.333 10.16 0.00 42.76 1.90
110 111 7.576287 GCCAAATATGCATGTAGTGATAGCATT 60.576 37.037 10.16 0.00 42.76 3.56
111 112 6.127814 GCCAAATATGCATGTAGTGATAGCAT 60.128 38.462 10.16 0.00 46.53 3.79
112 113 5.181811 GCCAAATATGCATGTAGTGATAGCA 59.818 40.000 10.16 0.00 39.79 3.49
113 114 5.413833 AGCCAAATATGCATGTAGTGATAGC 59.586 40.000 10.16 4.42 0.00 2.97
114 115 6.128090 CCAGCCAAATATGCATGTAGTGATAG 60.128 42.308 10.16 0.00 0.00 2.08
115 116 5.706833 CCAGCCAAATATGCATGTAGTGATA 59.293 40.000 10.16 0.00 0.00 2.15
116 117 4.521639 CCAGCCAAATATGCATGTAGTGAT 59.478 41.667 10.16 0.00 0.00 3.06
117 118 3.884693 CCAGCCAAATATGCATGTAGTGA 59.115 43.478 10.16 0.00 0.00 3.41
118 119 3.633525 ACCAGCCAAATATGCATGTAGTG 59.366 43.478 10.16 4.81 0.00 2.74
119 120 3.633525 CACCAGCCAAATATGCATGTAGT 59.366 43.478 10.16 0.00 0.00 2.73
120 121 3.005050 CCACCAGCCAAATATGCATGTAG 59.995 47.826 10.16 0.00 0.00 2.74
121 122 2.957680 CCACCAGCCAAATATGCATGTA 59.042 45.455 10.16 0.00 0.00 2.29
122 123 1.758280 CCACCAGCCAAATATGCATGT 59.242 47.619 10.16 0.00 0.00 3.21
123 124 2.033372 TCCACCAGCCAAATATGCATG 58.967 47.619 10.16 0.00 0.00 4.06
124 125 2.457813 TCCACCAGCCAAATATGCAT 57.542 45.000 3.79 3.79 0.00 3.96
125 126 2.228545 TTCCACCAGCCAAATATGCA 57.771 45.000 0.00 0.00 0.00 3.96
126 127 2.739609 GCTTTCCACCAGCCAAATATGC 60.740 50.000 0.00 0.00 0.00 3.14
127 128 2.762327 AGCTTTCCACCAGCCAAATATG 59.238 45.455 0.00 0.00 38.09 1.78
128 129 3.026694 GAGCTTTCCACCAGCCAAATAT 58.973 45.455 0.00 0.00 38.09 1.28
129 130 2.041620 AGAGCTTTCCACCAGCCAAATA 59.958 45.455 0.00 0.00 38.09 1.40
130 131 1.203100 AGAGCTTTCCACCAGCCAAAT 60.203 47.619 0.00 0.00 38.09 2.32
131 132 0.185901 AGAGCTTTCCACCAGCCAAA 59.814 50.000 0.00 0.00 38.09 3.28
132 133 1.064003 TAGAGCTTTCCACCAGCCAA 58.936 50.000 0.00 0.00 38.09 4.52
133 134 1.065199 CATAGAGCTTTCCACCAGCCA 60.065 52.381 0.00 0.00 38.09 4.75
134 135 1.673168 CATAGAGCTTTCCACCAGCC 58.327 55.000 0.00 0.00 38.09 4.85
135 136 1.065126 ACCATAGAGCTTTCCACCAGC 60.065 52.381 0.00 0.00 37.56 4.85
136 137 3.356529 AACCATAGAGCTTTCCACCAG 57.643 47.619 0.00 0.00 0.00 4.00
137 138 4.919774 TTAACCATAGAGCTTTCCACCA 57.080 40.909 0.00 0.00 0.00 4.17
138 139 5.254115 ACTTTAACCATAGAGCTTTCCACC 58.746 41.667 0.00 0.00 0.00 4.61
139 140 6.819397 AACTTTAACCATAGAGCTTTCCAC 57.181 37.500 0.00 0.00 0.00 4.02
140 141 7.657336 CAAAACTTTAACCATAGAGCTTTCCA 58.343 34.615 0.00 0.00 0.00 3.53
141 142 6.586463 GCAAAACTTTAACCATAGAGCTTTCC 59.414 38.462 0.00 0.00 0.00 3.13
142 143 6.305638 CGCAAAACTTTAACCATAGAGCTTTC 59.694 38.462 0.00 0.00 0.00 2.62
143 144 6.016610 TCGCAAAACTTTAACCATAGAGCTTT 60.017 34.615 0.00 0.00 0.00 3.51
144 145 5.472137 TCGCAAAACTTTAACCATAGAGCTT 59.528 36.000 0.00 0.00 0.00 3.74
145 146 5.001232 TCGCAAAACTTTAACCATAGAGCT 58.999 37.500 0.00 0.00 0.00 4.09
146 147 5.291293 TCGCAAAACTTTAACCATAGAGC 57.709 39.130 0.00 0.00 0.00 4.09
147 148 7.148967 GCTTTTCGCAAAACTTTAACCATAGAG 60.149 37.037 0.00 0.00 38.92 2.43
148 149 6.639279 GCTTTTCGCAAAACTTTAACCATAGA 59.361 34.615 0.00 0.00 38.92 1.98
149 150 6.128929 GGCTTTTCGCAAAACTTTAACCATAG 60.129 38.462 0.00 0.00 41.67 2.23
150 151 5.692654 GGCTTTTCGCAAAACTTTAACCATA 59.307 36.000 0.00 0.00 41.67 2.74
151 152 4.509970 GGCTTTTCGCAAAACTTTAACCAT 59.490 37.500 0.00 0.00 41.67 3.55
152 153 3.866327 GGCTTTTCGCAAAACTTTAACCA 59.134 39.130 0.00 0.00 41.67 3.67
153 154 3.866327 TGGCTTTTCGCAAAACTTTAACC 59.134 39.130 0.00 0.00 41.67 2.85
154 155 5.457650 TTGGCTTTTCGCAAAACTTTAAC 57.542 34.783 0.00 0.00 41.67 2.01
155 156 6.670077 AATTGGCTTTTCGCAAAACTTTAA 57.330 29.167 0.00 0.00 41.67 1.52
156 157 6.670077 AAATTGGCTTTTCGCAAAACTTTA 57.330 29.167 0.00 0.00 41.67 1.85
157 158 5.559427 AAATTGGCTTTTCGCAAAACTTT 57.441 30.435 0.00 0.00 41.67 2.66
158 159 5.559427 AAAATTGGCTTTTCGCAAAACTT 57.441 30.435 0.00 0.00 41.67 2.66
159 160 5.448496 GGAAAAATTGGCTTTTCGCAAAACT 60.448 36.000 4.88 0.00 43.35 2.66
160 161 4.732923 GGAAAAATTGGCTTTTCGCAAAAC 59.267 37.500 4.88 0.00 43.35 2.43
161 162 4.914540 GGAAAAATTGGCTTTTCGCAAAA 58.085 34.783 4.88 0.00 43.35 2.44
162 163 4.544242 GGAAAAATTGGCTTTTCGCAAA 57.456 36.364 4.88 0.00 43.35 3.68
166 167 4.923281 CAGTAGGGAAAAATTGGCTTTTCG 59.077 41.667 4.88 0.00 43.35 3.46
167 168 4.690748 GCAGTAGGGAAAAATTGGCTTTTC 59.309 41.667 2.72 2.72 42.23 2.29
168 169 4.102367 TGCAGTAGGGAAAAATTGGCTTTT 59.898 37.500 0.00 0.00 38.73 2.27
169 170 3.645687 TGCAGTAGGGAAAAATTGGCTTT 59.354 39.130 0.00 0.00 0.00 3.51
170 171 3.238597 TGCAGTAGGGAAAAATTGGCTT 58.761 40.909 0.00 0.00 0.00 4.35
171 172 2.888212 TGCAGTAGGGAAAAATTGGCT 58.112 42.857 0.00 0.00 0.00 4.75
172 173 3.676291 TTGCAGTAGGGAAAAATTGGC 57.324 42.857 0.00 0.00 0.00 4.52
173 174 4.283212 TCCTTTGCAGTAGGGAAAAATTGG 59.717 41.667 14.83 0.00 36.32 3.16
174 175 5.467035 TCCTTTGCAGTAGGGAAAAATTG 57.533 39.130 14.83 0.00 36.32 2.32
175 176 6.686484 ATTCCTTTGCAGTAGGGAAAAATT 57.314 33.333 14.83 0.00 40.57 1.82
176 177 7.978099 ATATTCCTTTGCAGTAGGGAAAAAT 57.022 32.000 14.83 10.33 40.57 1.82
177 178 9.487442 AATATATTCCTTTGCAGTAGGGAAAAA 57.513 29.630 14.83 4.30 40.57 1.94
178 179 9.487442 AAATATATTCCTTTGCAGTAGGGAAAA 57.513 29.630 14.83 5.04 40.57 2.29
179 180 9.487442 AAAATATATTCCTTTGCAGTAGGGAAA 57.513 29.630 14.83 5.62 40.57 3.13
187 188 9.492973 CCCCAAATAAAATATATTCCTTTGCAG 57.507 33.333 15.28 11.21 0.00 4.41
188 189 8.997734 ACCCCAAATAAAATATATTCCTTTGCA 58.002 29.630 15.28 0.00 0.00 4.08
189 190 9.845740 AACCCCAAATAAAATATATTCCTTTGC 57.154 29.630 15.28 0.00 0.00 3.68
202 203 8.841300 GCAAAAGTGATAAAACCCCAAATAAAA 58.159 29.630 0.00 0.00 0.00 1.52
203 204 8.214364 AGCAAAAGTGATAAAACCCCAAATAAA 58.786 29.630 0.00 0.00 0.00 1.40
204 205 7.740805 AGCAAAAGTGATAAAACCCCAAATAA 58.259 30.769 0.00 0.00 0.00 1.40
205 206 7.309770 AGCAAAAGTGATAAAACCCCAAATA 57.690 32.000 0.00 0.00 0.00 1.40
206 207 6.186420 AGCAAAAGTGATAAAACCCCAAAT 57.814 33.333 0.00 0.00 0.00 2.32
207 208 5.622346 AGCAAAAGTGATAAAACCCCAAA 57.378 34.783 0.00 0.00 0.00 3.28
208 209 5.836358 AGTAGCAAAAGTGATAAAACCCCAA 59.164 36.000 0.00 0.00 0.00 4.12
209 210 5.390387 AGTAGCAAAAGTGATAAAACCCCA 58.610 37.500 0.00 0.00 0.00 4.96
210 211 5.977489 AGTAGCAAAAGTGATAAAACCCC 57.023 39.130 0.00 0.00 0.00 4.95
211 212 6.745116 ACAAGTAGCAAAAGTGATAAAACCC 58.255 36.000 0.00 0.00 0.00 4.11
212 213 7.704899 ACAACAAGTAGCAAAAGTGATAAAACC 59.295 33.333 0.00 0.00 0.00 3.27
213 214 8.531530 CACAACAAGTAGCAAAAGTGATAAAAC 58.468 33.333 0.00 0.00 0.00 2.43
229 230 3.133183 TGAGTAGTGTGGCACAACAAGTA 59.867 43.478 23.90 3.91 44.16 2.24
233 234 1.484653 AGTGAGTAGTGTGGCACAACA 59.515 47.619 23.90 14.08 44.16 3.33
255 256 6.054295 AGCAGTGAAACATTTTAATGGCAAA 58.946 32.000 7.33 0.00 41.43 3.68
287 289 4.021016 GTGTGTCTCTAATGGAAGAGTGGT 60.021 45.833 1.15 0.00 43.02 4.16
298 300 5.769662 TGGCATTTTTGAGTGTGTCTCTAAT 59.230 36.000 0.00 0.00 43.13 1.73
419 422 1.882623 CCTGCTCGCTTTTCTTTTCCT 59.117 47.619 0.00 0.00 0.00 3.36
420 423 1.880027 TCCTGCTCGCTTTTCTTTTCC 59.120 47.619 0.00 0.00 0.00 3.13
421 424 3.626028 TTCCTGCTCGCTTTTCTTTTC 57.374 42.857 0.00 0.00 0.00 2.29
422 425 4.097892 TCTTTTCCTGCTCGCTTTTCTTTT 59.902 37.500 0.00 0.00 0.00 2.27
423 426 3.632145 TCTTTTCCTGCTCGCTTTTCTTT 59.368 39.130 0.00 0.00 0.00 2.52
424 427 3.214328 TCTTTTCCTGCTCGCTTTTCTT 58.786 40.909 0.00 0.00 0.00 2.52
425 428 2.851195 TCTTTTCCTGCTCGCTTTTCT 58.149 42.857 0.00 0.00 0.00 2.52
426 429 3.626028 TTCTTTTCCTGCTCGCTTTTC 57.374 42.857 0.00 0.00 0.00 2.29
427 430 4.385358 TTTTCTTTTCCTGCTCGCTTTT 57.615 36.364 0.00 0.00 0.00 2.27
428 431 4.037923 TGATTTTCTTTTCCTGCTCGCTTT 59.962 37.500 0.00 0.00 0.00 3.51
429 432 3.569701 TGATTTTCTTTTCCTGCTCGCTT 59.430 39.130 0.00 0.00 0.00 4.68
430 433 3.149196 TGATTTTCTTTTCCTGCTCGCT 58.851 40.909 0.00 0.00 0.00 4.93
431 434 3.559238 TGATTTTCTTTTCCTGCTCGC 57.441 42.857 0.00 0.00 0.00 5.03
432 435 6.261118 CCTATTGATTTTCTTTTCCTGCTCG 58.739 40.000 0.00 0.00 0.00 5.03
449 454 0.030092 CCCCCACTCTCCCCTATTGA 60.030 60.000 0.00 0.00 0.00 2.57
481 487 0.819259 TAGCCGCCCTGATTGAATGC 60.819 55.000 0.00 0.00 0.00 3.56
513 519 4.080807 TGCGTCTTCCTGGATGGTTATTAA 60.081 41.667 9.46 0.00 37.07 1.40
609 617 5.255397 TGAGTGGTTTGGTGATAGGATTT 57.745 39.130 0.00 0.00 0.00 2.17
619 627 3.499745 GGGAAAGGTATGAGTGGTTTGGT 60.500 47.826 0.00 0.00 0.00 3.67
626 634 5.832539 ATGGATAGGGAAAGGTATGAGTG 57.167 43.478 0.00 0.00 0.00 3.51
742 753 4.625781 GGAGCTACGTAGGCCGCG 62.626 72.222 23.47 18.70 41.42 6.46
743 754 4.625781 CGGAGCTACGTAGGCCGC 62.626 72.222 23.47 10.42 41.42 6.53
744 755 3.962421 CCGGAGCTACGTAGGCCG 61.962 72.222 23.47 9.29 44.03 6.13
745 756 4.281947 GCCGGAGCTACGTAGGCC 62.282 72.222 23.47 8.32 41.81 5.19
746 757 4.625781 CGCCGGAGCTACGTAGGC 62.626 72.222 23.47 17.25 44.00 3.93
747 758 4.625781 GCGCCGGAGCTACGTAGG 62.626 72.222 24.06 8.98 36.60 3.18
748 759 4.958396 CGCGCCGGAGCTACGTAG 62.958 72.222 27.85 18.47 36.60 3.51
871 940 4.778143 GTAGGTGCGCAGGGTGGG 62.778 72.222 12.22 0.00 0.00 4.61
872 941 4.015406 TGTAGGTGCGCAGGGTGG 62.015 66.667 12.22 0.00 0.00 4.61
873 942 2.742372 GTGTAGGTGCGCAGGGTG 60.742 66.667 12.22 0.00 0.00 4.61
874 943 2.923035 AGTGTAGGTGCGCAGGGT 60.923 61.111 12.22 0.00 0.00 4.34
937 1006 3.464720 AGAACAGAGGAGTCAGATGGA 57.535 47.619 0.00 0.00 0.00 3.41
997 1066 2.439507 ACCTGTTGTCTGTCTCCATTGT 59.560 45.455 0.00 0.00 0.00 2.71
1008 1077 2.232452 CTCTGATTCGGACCTGTTGTCT 59.768 50.000 0.00 0.00 43.89 3.41
1078 1148 7.072263 AGCATACTCACCTTGCTAGAATATT 57.928 36.000 0.00 0.00 44.51 1.28
1085 1155 7.361457 AGTAATTAGCATACTCACCTTGCTA 57.639 36.000 0.00 0.00 44.51 3.49
1090 1160 7.950684 TCATCCTAGTAATTAGCATACTCACCT 59.049 37.037 0.00 0.00 35.34 4.00
1134 1204 3.863424 ACAAATTCGACCGCTACATACTG 59.137 43.478 0.00 0.00 0.00 2.74
1247 1317 4.039973 AGACGACTTGTTTCCATCCTAACA 59.960 41.667 0.00 0.00 32.76 2.41
1293 1363 2.937469 TAATCAAAGCCGCCAACATG 57.063 45.000 0.00 0.00 0.00 3.21
1398 1468 5.068460 CCCTCTCATAGTACTTCAACTCCAG 59.932 48.000 0.00 0.00 0.00 3.86
1415 1485 6.590656 ACCCATATATTTTGTTCCCTCTCA 57.409 37.500 0.00 0.00 0.00 3.27
1523 1593 2.290577 GCTGGGAGTTGGAGATTTCTGT 60.291 50.000 0.00 0.00 0.00 3.41
1724 1794 5.571285 AGCATCATCAGGAATAGCATCATT 58.429 37.500 0.00 0.00 0.00 2.57
1898 1968 4.914983 TCTTCCTCCTCGTCTACTAAACA 58.085 43.478 0.00 0.00 0.00 2.83
1909 1979 0.467290 CCTCCTCCTCTTCCTCCTCG 60.467 65.000 0.00 0.00 0.00 4.63
1922 1992 2.041216 GTCTATCCTCCTCCTCCTCCTC 59.959 59.091 0.00 0.00 0.00 3.71
1923 1993 2.070573 GTCTATCCTCCTCCTCCTCCT 58.929 57.143 0.00 0.00 0.00 3.69
1924 1994 1.076513 GGTCTATCCTCCTCCTCCTCC 59.923 61.905 0.00 0.00 0.00 4.30
2062 2138 6.292150 CCTATTAGGATCACTCTTTTGGACC 58.708 44.000 3.41 0.00 37.67 4.46
2212 2288 9.096160 CAAATTGTATTGCTACCAATTGCATAA 57.904 29.630 0.00 0.00 41.68 1.90
2312 2390 1.734465 CTCTTAGCCGGCTTGAACTTG 59.266 52.381 37.74 16.50 0.00 3.16
2365 2443 3.691609 GCCAATGTCTGGGTTCTTTCTAG 59.308 47.826 0.00 0.00 46.54 2.43
2508 2586 8.768501 TCAGCCTTGAAACTATAGAGAAGATA 57.231 34.615 6.78 0.00 0.00 1.98
2553 2631 8.185506 TCTTTGTCTATTTCCACTACACTACA 57.814 34.615 0.00 0.00 0.00 2.74
2629 2707 5.240403 GCCTTGAATGAAACAAAGACTCTCT 59.760 40.000 0.00 0.00 0.00 3.10
2636 2714 5.049954 CCAACATGCCTTGAATGAAACAAAG 60.050 40.000 0.00 0.00 0.00 2.77
2685 2763 1.557371 TGAATCCACGGCCAAGTATGA 59.443 47.619 2.24 0.00 0.00 2.15
3179 3258 7.335422 CCTGACTTTGCTATTAAATGACTCTGT 59.665 37.037 0.00 0.00 0.00 3.41
3305 3384 5.184864 CACTTGGTATTATGAGTTGGCCAAA 59.815 40.000 22.47 5.00 34.63 3.28
3313 3392 7.499232 GCCTTTATCACACTTGGTATTATGAGT 59.501 37.037 0.00 0.00 0.00 3.41
3466 3545 0.397564 TCTGCCTCAACATCACTGCA 59.602 50.000 0.00 0.00 0.00 4.41
3526 3606 4.211125 TGTTTCCTTGGCTATGTCAACAA 58.789 39.130 0.00 0.00 0.00 2.83
3637 3717 8.470805 AGTAGAACTCATGTACATAAGGTTCAG 58.529 37.037 28.78 12.18 35.49 3.02
3665 3745 3.004734 ACGCAGCTTTGAATTTTGCTACT 59.995 39.130 0.00 0.00 34.10 2.57
3741 3822 3.084786 GGAGCTTGTAGTTTGAAGCCAT 58.915 45.455 0.00 0.00 44.79 4.40
3918 4001 7.193377 ACGTATTTTGGTCATAAACGTCTTT 57.807 32.000 0.00 0.00 0.00 2.52
3945 4028 1.299089 GTGACCAAAACGCCACAGC 60.299 57.895 0.00 0.00 0.00 4.40
3994 4077 1.061411 CATGTCAGATTGCCACGCG 59.939 57.895 3.53 3.53 0.00 6.01
4010 4093 1.392589 CGGGCTAAATCTTGTGCCAT 58.607 50.000 5.21 0.00 46.53 4.40
4023 4106 0.834612 AATCGAATTGGACCGGGCTA 59.165 50.000 7.57 0.00 0.00 3.93
4416 4504 4.242475 TGTAGGTTGCTTGAATCTGTACG 58.758 43.478 0.00 0.00 0.00 3.67
4541 4629 7.309770 AGGAAGAATCAGTACTTGAAGAAGT 57.690 36.000 0.00 0.00 44.90 3.01
4557 4645 5.993441 CCAGATGTTTTGCAAAAGGAAGAAT 59.007 36.000 24.46 11.28 0.00 2.40
4733 4824 4.452114 GCCAATTCAATTCCCTGTTTTGAC 59.548 41.667 0.00 0.00 0.00 3.18
4929 5020 9.546428 TCCTATTACATGTATCATTTGACACAG 57.454 33.333 6.36 0.00 34.68 3.66
5150 5274 2.632028 TGCACATTGTTATTTGCAGGGT 59.368 40.909 0.00 0.00 41.27 4.34
5342 5474 0.903942 GAATGATTGCCAAAGCCCCA 59.096 50.000 0.00 0.00 38.69 4.96
5771 5903 1.760875 GACCGCACTCCCCCATCTA 60.761 63.158 0.00 0.00 0.00 1.98
5790 5922 2.040544 CGCCAGTTCCGCCATCTTT 61.041 57.895 0.00 0.00 0.00 2.52
5791 5923 2.436646 CGCCAGTTCCGCCATCTT 60.437 61.111 0.00 0.00 0.00 2.40
5804 5936 3.763356 AGATCAGCTGCGTCGCCA 61.763 61.111 15.88 1.83 0.00 5.69
6126 6259 3.181445 TGAAACATTGTAGTGCTGACCCT 60.181 43.478 0.00 0.00 0.00 4.34
6308 6443 4.067896 GTCAGTGAAGCCTCTTCATTTCA 58.932 43.478 11.79 0.00 0.00 2.69
6459 6611 1.071314 TGGTGGTTTCCATGGGGAGT 61.071 55.000 13.02 0.00 46.01 3.85
6601 6753 2.546584 GCGATGTGATAGTCCTGCATCA 60.547 50.000 0.00 0.00 36.64 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.