Multiple sequence alignment - TraesCS6A01G204500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G204500 chr6A 100.000 4460 0 0 1 4460 356696456 356700915 0.000000e+00 8237.0
1 TraesCS6A01G204500 chr6A 94.363 479 27 0 10 488 356723602 356724080 0.000000e+00 736.0
2 TraesCS6A01G204500 chr6A 93.983 482 29 0 10 491 356738553 356739034 0.000000e+00 730.0
3 TraesCS6A01G204500 chr6A 92.901 493 30 3 1 491 356783395 356783884 0.000000e+00 712.0
4 TraesCS6A01G204500 chr3B 98.600 3929 52 3 534 4460 290769746 290773673 0.000000e+00 6948.0
5 TraesCS6A01G204500 chr3B 91.089 101 7 2 392 491 717011745 717011844 7.780000e-28 135.0
6 TraesCS6A01G204500 chr7B 97.082 3153 86 1 1314 4460 59089063 59085911 0.000000e+00 5308.0
7 TraesCS6A01G204500 chr7B 99.468 188 1 0 1025 1212 59089580 59089393 4.270000e-90 342.0
8 TraesCS6A01G204500 chr7B 94.495 109 6 0 254 362 605284942 605285050 7.670000e-38 169.0
9 TraesCS6A01G204500 chr7B 93.458 107 7 0 254 360 605292849 605292955 4.620000e-35 159.0
10 TraesCS6A01G204500 chr1D 86.041 1705 215 12 2753 4451 403934730 403936417 0.000000e+00 1808.0
11 TraesCS6A01G204500 chr1D 83.951 81 12 1 572 652 157979250 157979329 4.780000e-10 76.8
12 TraesCS6A01G204500 chr2D 85.103 1705 231 14 2753 4451 460354815 460353128 0.000000e+00 1720.0
13 TraesCS6A01G204500 chr2D 87.762 1381 161 6 3073 4451 386727753 386726379 0.000000e+00 1607.0
14 TraesCS6A01G204500 chr2D 82.202 1871 298 19 552 2389 460357048 460355180 0.000000e+00 1578.0
15 TraesCS6A01G204500 chr2D 83.601 1555 238 11 2912 4455 236141098 236142646 0.000000e+00 1443.0
16 TraesCS6A01G204500 chr2D 81.134 1023 143 27 547 1521 236138718 236139738 0.000000e+00 774.0
17 TraesCS6A01G204500 chr2D 80.622 836 148 7 1565 2389 236139742 236140574 6.290000e-178 634.0
18 TraesCS6A01G204500 chr2D 89.831 59 6 0 623 681 236138757 236138815 4.780000e-10 76.8
19 TraesCS6A01G204500 chr2B 85.505 1504 202 9 2950 4451 458089753 458088264 0.000000e+00 1555.0
20 TraesCS6A01G204500 chr1A 81.818 1870 290 31 554 2383 449788161 449786302 0.000000e+00 1524.0
21 TraesCS6A01G204500 chr1A 86.381 1028 130 7 3194 4218 449759541 449758521 0.000000e+00 1114.0
22 TraesCS6A01G204500 chr1A 79.733 449 76 6 2753 3198 449785953 449785517 1.200000e-80 311.0
23 TraesCS6A01G204500 chr1A 100.000 33 0 0 493 525 439929999 439930031 1.340000e-05 62.1
24 TraesCS6A01G204500 chr2A 85.110 1182 168 6 3276 4455 483427781 483428956 0.000000e+00 1201.0
25 TraesCS6A01G204500 chr2A 96.680 482 16 0 10 491 48955186 48955667 0.000000e+00 802.0
26 TraesCS6A01G204500 chr2A 95.349 86 4 0 409 494 642822849 642822764 2.160000e-28 137.0
27 TraesCS6A01G204500 chr2A 95.349 86 4 0 409 494 642831064 642830979 2.160000e-28 137.0
28 TraesCS6A01G204500 chr3A 78.580 1578 263 47 559 2079 468253957 468255516 0.000000e+00 972.0
29 TraesCS6A01G204500 chr3A 97.561 82 2 0 410 491 258634128 258634209 1.670000e-29 141.0
30 TraesCS6A01G204500 chr7A 93.168 483 28 3 10 491 423533555 423534033 0.000000e+00 704.0
31 TraesCS6A01G204500 chr5A 89.888 356 33 3 14 368 113302981 113302628 5.260000e-124 455.0
32 TraesCS6A01G204500 chr4D 89.310 290 30 1 1 290 202772454 202772166 3.280000e-96 363.0
33 TraesCS6A01G204500 chr6D 88.356 292 31 2 1 290 289682144 289681854 9.180000e-92 348.0
34 TraesCS6A01G204500 chr6D 88.276 290 31 2 1 290 378697587 378697873 1.190000e-90 344.0
35 TraesCS6A01G204500 chr1B 95.146 103 5 0 260 362 522461786 522461684 3.570000e-36 163.0
36 TraesCS6A01G204500 chr7D 80.526 190 33 1 988 1173 76594387 76594576 4.650000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G204500 chr6A 356696456 356700915 4459 False 8237.00 8237 100.0000 1 4460 1 chr6A.!!$F1 4459
1 TraesCS6A01G204500 chr3B 290769746 290773673 3927 False 6948.00 6948 98.6000 534 4460 1 chr3B.!!$F1 3926
2 TraesCS6A01G204500 chr7B 59085911 59089580 3669 True 2825.00 5308 98.2750 1025 4460 2 chr7B.!!$R1 3435
3 TraesCS6A01G204500 chr1D 403934730 403936417 1687 False 1808.00 1808 86.0410 2753 4451 1 chr1D.!!$F2 1698
4 TraesCS6A01G204500 chr2D 460353128 460357048 3920 True 1649.00 1720 83.6525 552 4451 2 chr2D.!!$R2 3899
5 TraesCS6A01G204500 chr2D 386726379 386727753 1374 True 1607.00 1607 87.7620 3073 4451 1 chr2D.!!$R1 1378
6 TraesCS6A01G204500 chr2D 236138718 236142646 3928 False 731.95 1443 83.7970 547 4455 4 chr2D.!!$F1 3908
7 TraesCS6A01G204500 chr2B 458088264 458089753 1489 True 1555.00 1555 85.5050 2950 4451 1 chr2B.!!$R1 1501
8 TraesCS6A01G204500 chr1A 449758521 449759541 1020 True 1114.00 1114 86.3810 3194 4218 1 chr1A.!!$R1 1024
9 TraesCS6A01G204500 chr1A 449785517 449788161 2644 True 917.50 1524 80.7755 554 3198 2 chr1A.!!$R2 2644
10 TraesCS6A01G204500 chr2A 483427781 483428956 1175 False 1201.00 1201 85.1100 3276 4455 1 chr2A.!!$F2 1179
11 TraesCS6A01G204500 chr3A 468253957 468255516 1559 False 972.00 972 78.5800 559 2079 1 chr3A.!!$F2 1520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.031178 CCTTTTGTGCTGCTTCGCTT 59.969 50.000 0.00 0.0 0.00 4.68 F
469 470 0.248990 TTTGTGCTGCTTCGCTTTGG 60.249 50.000 0.00 0.0 0.00 3.28 F
472 473 0.455633 GTGCTGCTTCGCTTTGGATG 60.456 55.000 0.00 0.0 0.00 3.51 F
487 488 0.602372 GGATGCGCCAAGATCCTCTC 60.602 60.000 15.35 0.0 36.04 3.20 F
537 538 1.000896 AAATTGGGCTGGGACCGAG 60.001 57.895 0.00 0.0 29.56 4.63 F
2325 2612 1.180029 CTTGCCAGCCAATTAGTGCT 58.820 50.000 0.00 0.0 38.67 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1406 1678 0.799917 CTCCGGCGAGATATCATGCG 60.800 60.000 9.30 6.87 38.52 4.73 R
1920 2192 1.676678 GCGGCTCATCCCACTCACTA 61.677 60.000 0.00 0.00 0.00 2.74 R
2032 2304 2.324330 CGAAACGCCATGGCAGACA 61.324 57.895 34.93 0.00 42.06 3.41 R
2319 2606 2.679996 TCCGCCTCTGCAGCACTA 60.680 61.111 9.47 0.00 37.32 2.74 R
2391 2732 3.073062 TCTCTTTTCCCAAAGTAGCAGCT 59.927 43.478 0.00 0.00 40.47 4.24 R
4080 4476 4.588951 TCAATCTTGGTCATAGTAGGCGAT 59.411 41.667 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.359975 TGCGCCGTCAGAGAGAGA 60.360 61.111 4.18 0.00 0.00 3.10
18 19 2.402572 TGCGCCGTCAGAGAGAGAG 61.403 63.158 4.18 0.00 0.00 3.20
19 20 2.109739 GCGCCGTCAGAGAGAGAGA 61.110 63.158 0.00 0.00 0.00 3.10
20 21 2.013807 CGCCGTCAGAGAGAGAGAG 58.986 63.158 0.00 0.00 0.00 3.20
21 22 0.461163 CGCCGTCAGAGAGAGAGAGA 60.461 60.000 0.00 0.00 0.00 3.10
22 23 1.299541 GCCGTCAGAGAGAGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
23 24 1.134521 GCCGTCAGAGAGAGAGAGAGA 60.135 57.143 0.00 0.00 0.00 3.10
24 25 2.550978 CCGTCAGAGAGAGAGAGAGAC 58.449 57.143 0.00 0.00 0.00 3.36
25 26 2.550978 CGTCAGAGAGAGAGAGAGACC 58.449 57.143 0.00 0.00 0.00 3.85
26 27 2.093711 CGTCAGAGAGAGAGAGAGACCA 60.094 54.545 0.00 0.00 0.00 4.02
27 28 3.535561 GTCAGAGAGAGAGAGAGACCAG 58.464 54.545 0.00 0.00 0.00 4.00
28 29 3.055094 GTCAGAGAGAGAGAGAGACCAGT 60.055 52.174 0.00 0.00 0.00 4.00
29 30 3.055167 TCAGAGAGAGAGAGAGACCAGTG 60.055 52.174 0.00 0.00 0.00 3.66
30 31 2.017049 GAGAGAGAGAGAGACCAGTGC 58.983 57.143 0.00 0.00 0.00 4.40
31 32 1.102978 GAGAGAGAGAGACCAGTGCC 58.897 60.000 0.00 0.00 0.00 5.01
32 33 0.679640 AGAGAGAGAGACCAGTGCCG 60.680 60.000 0.00 0.00 0.00 5.69
33 34 0.963355 GAGAGAGAGACCAGTGCCGT 60.963 60.000 0.00 0.00 0.00 5.68
34 35 1.214062 GAGAGAGACCAGTGCCGTG 59.786 63.158 0.00 0.00 0.00 4.94
35 36 2.433318 GAGAGACCAGTGCCGTGC 60.433 66.667 0.00 0.00 0.00 5.34
36 37 3.941657 GAGAGACCAGTGCCGTGCC 62.942 68.421 0.00 0.00 0.00 5.01
39 40 4.643387 GACCAGTGCCGTGCCCTT 62.643 66.667 0.00 0.00 0.00 3.95
40 41 4.954970 ACCAGTGCCGTGCCCTTG 62.955 66.667 0.00 0.00 0.00 3.61
41 42 4.954970 CCAGTGCCGTGCCCTTGT 62.955 66.667 0.00 0.00 0.00 3.16
42 43 3.357079 CAGTGCCGTGCCCTTGTC 61.357 66.667 0.00 0.00 0.00 3.18
43 44 4.643387 AGTGCCGTGCCCTTGTCC 62.643 66.667 0.00 0.00 0.00 4.02
47 48 4.636435 CCGTGCCCTTGTCCCGTT 62.636 66.667 0.00 0.00 0.00 4.44
48 49 2.344500 CGTGCCCTTGTCCCGTTA 59.656 61.111 0.00 0.00 0.00 3.18
49 50 2.030958 CGTGCCCTTGTCCCGTTAC 61.031 63.158 0.00 0.00 0.00 2.50
50 51 1.673337 GTGCCCTTGTCCCGTTACC 60.673 63.158 0.00 0.00 0.00 2.85
51 52 2.045634 GCCCTTGTCCCGTTACCC 60.046 66.667 0.00 0.00 0.00 3.69
52 53 2.672908 CCCTTGTCCCGTTACCCC 59.327 66.667 0.00 0.00 0.00 4.95
53 54 1.921857 CCCTTGTCCCGTTACCCCT 60.922 63.158 0.00 0.00 0.00 4.79
54 55 1.600638 CCTTGTCCCGTTACCCCTC 59.399 63.158 0.00 0.00 0.00 4.30
55 56 1.217244 CTTGTCCCGTTACCCCTCG 59.783 63.158 0.00 0.00 0.00 4.63
56 57 2.234913 CTTGTCCCGTTACCCCTCGG 62.235 65.000 0.00 0.00 45.42 4.63
57 58 4.152964 GTCCCGTTACCCCTCGGC 62.153 72.222 0.00 0.00 44.63 5.54
60 61 3.846430 CCGTTACCCCTCGGCCTC 61.846 72.222 0.00 0.00 40.28 4.70
61 62 3.846430 CGTTACCCCTCGGCCTCC 61.846 72.222 0.00 0.00 0.00 4.30
62 63 2.365237 GTTACCCCTCGGCCTCCT 60.365 66.667 0.00 0.00 0.00 3.69
63 64 2.042230 TTACCCCTCGGCCTCCTC 60.042 66.667 0.00 0.00 0.00 3.71
64 65 3.691297 TTACCCCTCGGCCTCCTCC 62.691 68.421 0.00 0.00 0.00 4.30
68 69 4.824515 CCTCGGCCTCCTCCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
69 70 3.213402 CTCGGCCTCCTCCTCGTC 61.213 72.222 0.00 0.00 0.00 4.20
72 73 3.069318 GGCCTCCTCCTCGTCGTT 61.069 66.667 0.00 0.00 0.00 3.85
73 74 2.182030 GCCTCCTCCTCGTCGTTG 59.818 66.667 0.00 0.00 0.00 4.10
74 75 2.885861 CCTCCTCCTCGTCGTTGG 59.114 66.667 0.00 0.00 0.00 3.77
75 76 1.677966 CCTCCTCCTCGTCGTTGGA 60.678 63.158 8.83 8.83 0.00 3.53
76 77 1.658686 CCTCCTCCTCGTCGTTGGAG 61.659 65.000 21.56 21.56 46.91 3.86
77 78 0.961358 CTCCTCCTCGTCGTTGGAGT 60.961 60.000 24.27 0.00 46.17 3.85
78 79 0.959372 TCCTCCTCGTCGTTGGAGTC 60.959 60.000 24.27 0.00 46.17 3.36
79 80 0.961358 CCTCCTCGTCGTTGGAGTCT 60.961 60.000 24.27 0.00 46.17 3.24
80 81 1.678123 CCTCCTCGTCGTTGGAGTCTA 60.678 57.143 24.27 0.00 46.17 2.59
81 82 1.666700 CTCCTCGTCGTTGGAGTCTAG 59.333 57.143 20.76 4.71 43.49 2.43
82 83 0.099082 CCTCGTCGTTGGAGTCTAGC 59.901 60.000 0.00 0.00 0.00 3.42
83 84 0.099082 CTCGTCGTTGGAGTCTAGCC 59.901 60.000 0.00 0.00 0.00 3.93
84 85 0.607217 TCGTCGTTGGAGTCTAGCCA 60.607 55.000 0.00 0.00 0.00 4.75
85 86 0.456312 CGTCGTTGGAGTCTAGCCAC 60.456 60.000 0.00 0.00 34.56 5.01
86 87 0.108756 GTCGTTGGAGTCTAGCCACC 60.109 60.000 0.00 0.00 34.56 4.61
87 88 1.218316 CGTTGGAGTCTAGCCACCC 59.782 63.158 0.00 0.00 34.56 4.61
88 89 1.218316 GTTGGAGTCTAGCCACCCG 59.782 63.158 0.00 0.00 34.56 5.28
89 90 1.229082 TTGGAGTCTAGCCACCCGT 60.229 57.895 0.00 0.00 34.56 5.28
90 91 1.255667 TTGGAGTCTAGCCACCCGTC 61.256 60.000 0.00 0.00 34.56 4.79
91 92 2.424733 GGAGTCTAGCCACCCGTCC 61.425 68.421 0.00 0.00 0.00 4.79
92 93 1.681327 GAGTCTAGCCACCCGTCCA 60.681 63.158 0.00 0.00 0.00 4.02
93 94 1.668101 GAGTCTAGCCACCCGTCCAG 61.668 65.000 0.00 0.00 0.00 3.86
94 95 3.075005 TCTAGCCACCCGTCCAGC 61.075 66.667 0.00 0.00 0.00 4.85
95 96 3.390521 CTAGCCACCCGTCCAGCA 61.391 66.667 0.00 0.00 0.00 4.41
96 97 3.376935 CTAGCCACCCGTCCAGCAG 62.377 68.421 0.00 0.00 0.00 4.24
99 100 4.087892 CCACCCGTCCAGCAGGAG 62.088 72.222 0.00 0.00 46.92 3.69
100 101 4.087892 CACCCGTCCAGCAGGAGG 62.088 72.222 10.66 10.66 46.92 4.30
121 122 3.499737 CCGCCACCATGAACGCTC 61.500 66.667 0.00 0.00 0.00 5.03
122 123 3.853330 CGCCACCATGAACGCTCG 61.853 66.667 0.00 0.00 0.00 5.03
123 124 4.166011 GCCACCATGAACGCTCGC 62.166 66.667 0.00 0.00 0.00 5.03
124 125 2.741985 CCACCATGAACGCTCGCA 60.742 61.111 0.00 0.00 0.00 5.10
125 126 2.743752 CCACCATGAACGCTCGCAG 61.744 63.158 0.00 0.00 0.00 5.18
126 127 2.434884 ACCATGAACGCTCGCAGG 60.435 61.111 0.00 0.00 0.00 4.85
127 128 2.125552 CCATGAACGCTCGCAGGA 60.126 61.111 0.00 0.00 0.00 3.86
128 129 2.169789 CCATGAACGCTCGCAGGAG 61.170 63.158 0.00 0.00 43.46 3.69
174 175 4.847444 GAGCAAGCTCCTCCGCCC 62.847 72.222 10.92 0.00 37.11 6.13
197 198 4.634133 TCCGTTCGCGCTGTCGTT 62.634 61.111 5.56 0.00 39.70 3.85
198 199 3.698463 CCGTTCGCGCTGTCGTTT 61.698 61.111 5.56 0.00 39.70 3.60
199 200 2.494728 CGTTCGCGCTGTCGTTTG 60.495 61.111 5.56 0.00 38.14 2.93
200 201 2.791331 GTTCGCGCTGTCGTTTGC 60.791 61.111 5.56 0.00 38.14 3.68
201 202 2.964925 TTCGCGCTGTCGTTTGCT 60.965 55.556 5.56 0.00 38.14 3.91
202 203 2.938823 TTCGCGCTGTCGTTTGCTC 61.939 57.895 5.56 0.00 38.14 4.26
203 204 4.759893 CGCGCTGTCGTTTGCTCG 62.760 66.667 5.56 0.00 38.14 5.03
204 205 4.430423 GCGCTGTCGTTTGCTCGG 62.430 66.667 0.00 0.00 38.14 4.63
205 206 2.733218 CGCTGTCGTTTGCTCGGA 60.733 61.111 0.00 0.00 0.00 4.55
206 207 2.094659 CGCTGTCGTTTGCTCGGAT 61.095 57.895 0.00 0.00 0.00 4.18
207 208 1.710339 GCTGTCGTTTGCTCGGATC 59.290 57.895 0.00 0.00 0.00 3.36
208 209 1.696832 GCTGTCGTTTGCTCGGATCC 61.697 60.000 0.00 0.00 0.00 3.36
209 210 1.413767 CTGTCGTTTGCTCGGATCCG 61.414 60.000 28.62 28.62 41.35 4.18
210 211 2.165301 GTCGTTTGCTCGGATCCGG 61.165 63.158 32.79 23.49 40.25 5.14
211 212 2.125673 CGTTTGCTCGGATCCGGT 60.126 61.111 32.79 0.00 40.25 5.28
212 213 2.452813 CGTTTGCTCGGATCCGGTG 61.453 63.158 32.79 25.07 40.25 4.94
213 214 2.435938 TTTGCTCGGATCCGGTGC 60.436 61.111 32.79 32.09 40.25 5.01
214 215 3.969250 TTTGCTCGGATCCGGTGCC 62.969 63.158 33.40 21.52 40.25 5.01
239 240 3.781307 CGGATCCACCCGGCTTCA 61.781 66.667 13.41 0.00 45.43 3.02
240 241 2.124695 GGATCCACCCGGCTTCAC 60.125 66.667 6.95 0.00 0.00 3.18
241 242 2.670148 GGATCCACCCGGCTTCACT 61.670 63.158 6.95 0.00 0.00 3.41
242 243 1.450312 GATCCACCCGGCTTCACTG 60.450 63.158 0.00 0.00 0.00 3.66
243 244 2.185310 GATCCACCCGGCTTCACTGT 62.185 60.000 0.00 0.00 0.00 3.55
244 245 1.779061 ATCCACCCGGCTTCACTGTT 61.779 55.000 0.00 0.00 0.00 3.16
245 246 1.966451 CCACCCGGCTTCACTGTTC 60.966 63.158 0.00 0.00 0.00 3.18
246 247 1.966451 CACCCGGCTTCACTGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
247 248 2.359975 CCCGGCTTCACTGTTCCC 60.360 66.667 0.00 0.00 0.00 3.97
248 249 2.742372 CCGGCTTCACTGTTCCCG 60.742 66.667 0.00 0.00 38.71 5.14
249 250 2.742372 CGGCTTCACTGTTCCCGG 60.742 66.667 0.00 0.00 35.54 5.73
250 251 3.056328 GGCTTCACTGTTCCCGGC 61.056 66.667 0.00 0.00 0.00 6.13
251 252 3.423154 GCTTCACTGTTCCCGGCG 61.423 66.667 0.00 0.00 0.00 6.46
252 253 3.423154 CTTCACTGTTCCCGGCGC 61.423 66.667 0.00 0.00 0.00 6.53
253 254 3.883744 CTTCACTGTTCCCGGCGCT 62.884 63.158 7.64 0.00 0.00 5.92
254 255 4.680237 TCACTGTTCCCGGCGCTG 62.680 66.667 9.96 9.96 0.00 5.18
269 270 3.207669 CTGCCGGAGCCATGCTTC 61.208 66.667 5.05 0.00 39.88 3.86
270 271 3.982316 CTGCCGGAGCCATGCTTCA 62.982 63.158 5.05 0.00 39.88 3.02
271 272 2.751436 GCCGGAGCCATGCTTCAA 60.751 61.111 5.05 0.00 39.88 2.69
272 273 2.768492 GCCGGAGCCATGCTTCAAG 61.768 63.158 5.05 0.00 39.88 3.02
273 274 1.377725 CCGGAGCCATGCTTCAAGT 60.378 57.895 0.00 0.00 39.88 3.16
274 275 1.372087 CCGGAGCCATGCTTCAAGTC 61.372 60.000 0.00 0.00 39.88 3.01
275 276 1.372087 CGGAGCCATGCTTCAAGTCC 61.372 60.000 0.00 0.00 39.88 3.85
276 277 1.034292 GGAGCCATGCTTCAAGTCCC 61.034 60.000 0.00 0.00 39.88 4.46
277 278 1.000396 AGCCATGCTTCAAGTCCCC 60.000 57.895 0.00 0.00 33.89 4.81
278 279 2.409870 GCCATGCTTCAAGTCCCCG 61.410 63.158 0.00 0.00 0.00 5.73
279 280 1.299648 CCATGCTTCAAGTCCCCGA 59.700 57.895 0.00 0.00 0.00 5.14
280 281 1.026718 CCATGCTTCAAGTCCCCGAC 61.027 60.000 0.00 0.00 0.00 4.79
281 282 1.079127 ATGCTTCAAGTCCCCGACG 60.079 57.895 0.00 0.00 37.67 5.12
282 283 3.119096 GCTTCAAGTCCCCGACGC 61.119 66.667 0.00 0.00 37.67 5.19
283 284 2.434359 CTTCAAGTCCCCGACGCC 60.434 66.667 0.00 0.00 37.67 5.68
284 285 3.234630 CTTCAAGTCCCCGACGCCA 62.235 63.158 0.00 0.00 37.67 5.69
285 286 2.725203 CTTCAAGTCCCCGACGCCAA 62.725 60.000 0.00 0.00 37.67 4.52
286 287 2.725203 TTCAAGTCCCCGACGCCAAG 62.725 60.000 0.00 0.00 37.67 3.61
287 288 4.699522 AAGTCCCCGACGCCAAGC 62.700 66.667 0.00 0.00 37.67 4.01
292 293 4.379243 CCCGACGCCAAGCTCTGT 62.379 66.667 0.00 0.00 0.00 3.41
293 294 2.811317 CCGACGCCAAGCTCTGTC 60.811 66.667 0.00 0.00 0.00 3.51
294 295 3.175240 CGACGCCAAGCTCTGTCG 61.175 66.667 13.17 13.17 46.57 4.35
295 296 3.482783 GACGCCAAGCTCTGTCGC 61.483 66.667 0.00 0.00 0.00 5.19
297 298 4.749310 CGCCAAGCTCTGTCGCCT 62.749 66.667 0.00 0.00 0.00 5.52
298 299 2.817396 GCCAAGCTCTGTCGCCTC 60.817 66.667 0.00 0.00 0.00 4.70
299 300 2.125350 CCAAGCTCTGTCGCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
300 301 2.507992 CAAGCTCTGTCGCCTCCG 60.508 66.667 0.00 0.00 0.00 4.63
301 302 3.764466 AAGCTCTGTCGCCTCCGG 61.764 66.667 0.00 0.00 34.56 5.14
311 312 4.516195 GCCTCCGGCTTCGACCTC 62.516 72.222 0.00 0.00 46.69 3.85
312 313 3.839432 CCTCCGGCTTCGACCTCC 61.839 72.222 0.00 0.00 35.61 4.30
313 314 2.756283 CTCCGGCTTCGACCTCCT 60.756 66.667 0.00 0.00 35.61 3.69
314 315 2.754658 TCCGGCTTCGACCTCCTC 60.755 66.667 0.00 0.00 35.61 3.71
315 316 3.839432 CCGGCTTCGACCTCCTCC 61.839 72.222 0.00 0.00 35.61 4.30
316 317 3.839432 CGGCTTCGACCTCCTCCC 61.839 72.222 0.00 0.00 35.61 4.30
317 318 2.364448 GGCTTCGACCTCCTCCCT 60.364 66.667 0.00 0.00 0.00 4.20
318 319 2.428085 GGCTTCGACCTCCTCCCTC 61.428 68.421 0.00 0.00 0.00 4.30
319 320 2.776913 GCTTCGACCTCCTCCCTCG 61.777 68.421 0.00 0.00 0.00 4.63
320 321 2.754658 TTCGACCTCCTCCCTCGC 60.755 66.667 0.00 0.00 0.00 5.03
339 340 4.168291 CGGCTCCTTCCCTGCCTC 62.168 72.222 0.00 0.00 44.09 4.70
340 341 3.803162 GGCTCCTTCCCTGCCTCC 61.803 72.222 0.00 0.00 43.05 4.30
341 342 3.011517 GCTCCTTCCCTGCCTCCA 61.012 66.667 0.00 0.00 0.00 3.86
342 343 2.993853 CTCCTTCCCTGCCTCCAC 59.006 66.667 0.00 0.00 0.00 4.02
343 344 2.610859 TCCTTCCCTGCCTCCACC 60.611 66.667 0.00 0.00 0.00 4.61
344 345 4.101448 CCTTCCCTGCCTCCACCG 62.101 72.222 0.00 0.00 0.00 4.94
345 346 4.785453 CTTCCCTGCCTCCACCGC 62.785 72.222 0.00 0.00 0.00 5.68
368 369 4.790962 CACCATGGCGCTCCTGCT 62.791 66.667 13.04 0.00 36.97 4.24
369 370 3.083349 ACCATGGCGCTCCTGCTA 61.083 61.111 13.04 0.00 36.97 3.49
370 371 2.429058 CCATGGCGCTCCTGCTAT 59.571 61.111 7.64 0.00 36.38 2.97
371 372 3.651645 CATGGCGCTCCTGCTATG 58.348 61.111 7.64 0.00 45.39 2.23
372 373 2.281345 ATGGCGCTCCTGCTATGC 60.281 61.111 7.64 0.00 34.49 3.14
373 374 2.815945 ATGGCGCTCCTGCTATGCT 61.816 57.895 7.64 0.00 34.49 3.79
374 375 2.203126 GGCGCTCCTGCTATGCTT 60.203 61.111 7.64 0.00 36.97 3.91
375 376 2.541120 GGCGCTCCTGCTATGCTTG 61.541 63.158 7.64 0.00 36.97 4.01
376 377 3.020627 CGCTCCTGCTATGCTTGC 58.979 61.111 0.00 0.00 36.97 4.01
377 378 1.523258 CGCTCCTGCTATGCTTGCT 60.523 57.895 0.00 0.00 36.97 3.91
378 379 0.249615 CGCTCCTGCTATGCTTGCTA 60.250 55.000 0.00 0.00 36.97 3.49
379 380 1.224965 GCTCCTGCTATGCTTGCTAC 58.775 55.000 0.00 0.00 36.03 3.58
380 381 1.876322 CTCCTGCTATGCTTGCTACC 58.124 55.000 0.00 0.00 0.00 3.18
381 382 0.104855 TCCTGCTATGCTTGCTACCG 59.895 55.000 0.00 0.00 0.00 4.02
382 383 1.502163 CCTGCTATGCTTGCTACCGC 61.502 60.000 0.00 0.00 0.00 5.68
383 384 0.811219 CTGCTATGCTTGCTACCGCA 60.811 55.000 0.00 0.00 46.24 5.69
391 392 2.345991 TGCTACCGCACCTCCAAC 59.654 61.111 0.00 0.00 42.25 3.77
392 393 2.214216 TGCTACCGCACCTCCAACT 61.214 57.895 0.00 0.00 42.25 3.16
393 394 1.741770 GCTACCGCACCTCCAACTG 60.742 63.158 0.00 0.00 35.78 3.16
394 395 1.741770 CTACCGCACCTCCAACTGC 60.742 63.158 0.00 0.00 0.00 4.40
395 396 3.248446 TACCGCACCTCCAACTGCC 62.248 63.158 0.00 0.00 0.00 4.85
399 400 3.579302 CACCTCCAACTGCCCCCA 61.579 66.667 0.00 0.00 0.00 4.96
400 401 3.260100 ACCTCCAACTGCCCCCAG 61.260 66.667 0.00 0.00 44.80 4.45
401 402 4.748144 CCTCCAACTGCCCCCAGC 62.748 72.222 0.00 0.00 43.02 4.85
402 403 3.655211 CTCCAACTGCCCCCAGCT 61.655 66.667 0.00 0.00 43.02 4.24
403 404 3.933048 CTCCAACTGCCCCCAGCTG 62.933 68.421 6.78 6.78 43.02 4.24
404 405 3.970410 CCAACTGCCCCCAGCTGA 61.970 66.667 17.39 0.00 43.02 4.26
405 406 2.357836 CAACTGCCCCCAGCTGAT 59.642 61.111 17.39 0.00 43.02 2.90
406 407 2.050350 CAACTGCCCCCAGCTGATG 61.050 63.158 17.39 5.70 43.02 3.07
407 408 2.233566 AACTGCCCCCAGCTGATGA 61.234 57.895 17.39 0.00 43.02 2.92
408 409 2.124403 CTGCCCCCAGCTGATGAC 60.124 66.667 17.39 2.34 42.76 3.06
409 410 2.934932 TGCCCCCAGCTGATGACA 60.935 61.111 17.39 5.27 44.23 3.58
410 411 2.280404 CTGCCCCCAGCTGATGACAT 62.280 60.000 17.39 0.00 42.76 3.06
411 412 1.826921 GCCCCCAGCTGATGACATG 60.827 63.158 17.39 0.00 38.99 3.21
412 413 1.152819 CCCCCAGCTGATGACATGG 60.153 63.158 17.39 5.54 0.00 3.66
413 414 1.826921 CCCCAGCTGATGACATGGC 60.827 63.158 17.39 0.00 0.00 4.40
414 415 1.077285 CCCAGCTGATGACATGGCA 60.077 57.895 17.39 2.18 0.00 4.92
415 416 1.101635 CCCAGCTGATGACATGGCAG 61.102 60.000 17.39 5.13 0.00 4.85
417 418 3.117372 GCTGATGACATGGCAGCC 58.883 61.111 15.58 3.66 46.94 4.85
418 419 1.453379 GCTGATGACATGGCAGCCT 60.453 57.895 15.58 0.00 46.94 4.58
419 420 1.445716 GCTGATGACATGGCAGCCTC 61.446 60.000 15.58 3.73 46.94 4.70
420 421 0.180642 CTGATGACATGGCAGCCTCT 59.819 55.000 15.58 0.00 0.00 3.69
421 422 0.107361 TGATGACATGGCAGCCTCTG 60.107 55.000 15.58 12.74 34.12 3.35
422 423 0.107312 GATGACATGGCAGCCTCTGT 60.107 55.000 14.15 16.01 33.43 3.41
423 424 0.330604 ATGACATGGCAGCCTCTGTT 59.669 50.000 14.15 0.00 33.43 3.16
424 425 0.321919 TGACATGGCAGCCTCTGTTC 60.322 55.000 14.15 10.51 33.43 3.18
425 426 1.364626 GACATGGCAGCCTCTGTTCG 61.365 60.000 14.15 0.00 33.43 3.95
426 427 1.376424 CATGGCAGCCTCTGTTCGT 60.376 57.895 14.15 0.00 33.43 3.85
427 428 0.957395 CATGGCAGCCTCTGTTCGTT 60.957 55.000 14.15 0.00 33.43 3.85
428 429 0.957395 ATGGCAGCCTCTGTTCGTTG 60.957 55.000 14.15 0.00 33.43 4.10
429 430 1.301716 GGCAGCCTCTGTTCGTTGA 60.302 57.895 3.29 0.00 33.43 3.18
430 431 1.569479 GGCAGCCTCTGTTCGTTGAC 61.569 60.000 3.29 0.00 33.43 3.18
431 432 1.569479 GCAGCCTCTGTTCGTTGACC 61.569 60.000 0.00 0.00 33.43 4.02
432 433 0.249868 CAGCCTCTGTTCGTTGACCA 60.250 55.000 0.00 0.00 0.00 4.02
433 434 0.249911 AGCCTCTGTTCGTTGACCAC 60.250 55.000 0.00 0.00 0.00 4.16
434 435 1.228657 GCCTCTGTTCGTTGACCACC 61.229 60.000 0.00 0.00 0.00 4.61
435 436 0.944311 CCTCTGTTCGTTGACCACCG 60.944 60.000 0.00 0.00 0.00 4.94
436 437 0.031585 CTCTGTTCGTTGACCACCGA 59.968 55.000 0.00 0.00 0.00 4.69
437 438 0.031585 TCTGTTCGTTGACCACCGAG 59.968 55.000 0.00 0.00 34.16 4.63
438 439 0.031585 CTGTTCGTTGACCACCGAGA 59.968 55.000 0.00 0.00 34.16 4.04
439 440 0.460722 TGTTCGTTGACCACCGAGAA 59.539 50.000 0.00 0.00 34.16 2.87
440 441 0.857287 GTTCGTTGACCACCGAGAAC 59.143 55.000 0.00 0.00 34.16 3.01
441 442 0.249573 TTCGTTGACCACCGAGAACC 60.250 55.000 0.00 0.00 34.16 3.62
442 443 2.019951 CGTTGACCACCGAGAACCG 61.020 63.158 0.00 0.00 38.18 4.44
443 444 1.364901 GTTGACCACCGAGAACCGA 59.635 57.895 0.00 0.00 41.76 4.69
444 445 0.666577 GTTGACCACCGAGAACCGAG 60.667 60.000 0.00 0.00 41.76 4.63
445 446 1.812686 TTGACCACCGAGAACCGAGG 61.813 60.000 0.00 0.00 41.76 4.63
446 447 3.644399 GACCACCGAGAACCGAGGC 62.644 68.421 0.00 0.00 41.76 4.70
447 448 4.452733 CCACCGAGAACCGAGGCC 62.453 72.222 0.00 0.00 41.76 5.19
448 449 4.452733 CACCGAGAACCGAGGCCC 62.453 72.222 0.00 0.00 41.76 5.80
449 450 4.698625 ACCGAGAACCGAGGCCCT 62.699 66.667 0.00 0.00 41.76 5.19
450 451 3.391382 CCGAGAACCGAGGCCCTT 61.391 66.667 0.00 0.00 41.76 3.95
451 452 2.663196 CGAGAACCGAGGCCCTTT 59.337 61.111 0.00 0.00 41.76 3.11
452 453 1.003718 CGAGAACCGAGGCCCTTTT 60.004 57.895 0.00 0.00 41.76 2.27
453 454 1.298859 CGAGAACCGAGGCCCTTTTG 61.299 60.000 0.00 0.00 41.76 2.44
454 455 0.250770 GAGAACCGAGGCCCTTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
455 456 0.537371 AGAACCGAGGCCCTTTTGTG 60.537 55.000 0.00 0.00 0.00 3.33
456 457 2.142357 GAACCGAGGCCCTTTTGTGC 62.142 60.000 0.00 0.00 0.00 4.57
457 458 2.282462 CCGAGGCCCTTTTGTGCT 60.282 61.111 0.00 0.00 0.00 4.40
458 459 2.629656 CCGAGGCCCTTTTGTGCTG 61.630 63.158 0.00 0.00 0.00 4.41
459 460 2.653115 GAGGCCCTTTTGTGCTGC 59.347 61.111 0.00 0.00 0.00 5.25
460 461 1.905354 GAGGCCCTTTTGTGCTGCT 60.905 57.895 0.00 0.00 0.00 4.24
461 462 1.458209 AGGCCCTTTTGTGCTGCTT 60.458 52.632 0.00 0.00 0.00 3.91
462 463 1.005748 GGCCCTTTTGTGCTGCTTC 60.006 57.895 0.00 0.00 0.00 3.86
463 464 1.372128 GCCCTTTTGTGCTGCTTCG 60.372 57.895 0.00 0.00 0.00 3.79
464 465 1.372128 CCCTTTTGTGCTGCTTCGC 60.372 57.895 0.00 0.00 0.00 4.70
465 466 1.656441 CCTTTTGTGCTGCTTCGCT 59.344 52.632 0.00 0.00 0.00 4.93
466 467 0.031178 CCTTTTGTGCTGCTTCGCTT 59.969 50.000 0.00 0.00 0.00 4.68
467 468 1.536709 CCTTTTGTGCTGCTTCGCTTT 60.537 47.619 0.00 0.00 0.00 3.51
468 469 1.519758 CTTTTGTGCTGCTTCGCTTTG 59.480 47.619 0.00 0.00 0.00 2.77
469 470 0.248990 TTTGTGCTGCTTCGCTTTGG 60.249 50.000 0.00 0.00 0.00 3.28
470 471 1.100463 TTGTGCTGCTTCGCTTTGGA 61.100 50.000 0.00 0.00 0.00 3.53
471 472 0.890542 TGTGCTGCTTCGCTTTGGAT 60.891 50.000 0.00 0.00 0.00 3.41
472 473 0.455633 GTGCTGCTTCGCTTTGGATG 60.456 55.000 0.00 0.00 0.00 3.51
473 474 1.515736 GCTGCTTCGCTTTGGATGC 60.516 57.895 0.00 0.00 37.54 3.91
484 485 3.323622 TGGATGCGCCAAGATCCT 58.676 55.556 21.19 0.00 45.87 3.24
485 486 1.146930 TGGATGCGCCAAGATCCTC 59.853 57.895 21.19 1.54 45.87 3.71
486 487 1.340399 TGGATGCGCCAAGATCCTCT 61.340 55.000 21.19 0.00 45.87 3.69
487 488 0.602372 GGATGCGCCAAGATCCTCTC 60.602 60.000 15.35 0.00 36.04 3.20
488 489 0.602372 GATGCGCCAAGATCCTCTCC 60.602 60.000 4.18 0.00 0.00 3.71
489 490 2.279784 GCGCCAAGATCCTCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
490 491 2.786495 GCGCCAAGATCCTCTCCGA 61.786 63.158 0.00 0.00 0.00 4.55
491 492 1.361993 CGCCAAGATCCTCTCCGAG 59.638 63.158 0.00 0.00 0.00 4.63
492 493 1.103987 CGCCAAGATCCTCTCCGAGA 61.104 60.000 0.00 0.00 0.00 4.04
493 494 1.115467 GCCAAGATCCTCTCCGAGAA 58.885 55.000 0.00 0.00 0.00 2.87
494 495 1.202475 GCCAAGATCCTCTCCGAGAAC 60.202 57.143 0.00 0.00 0.00 3.01
495 496 2.103373 CCAAGATCCTCTCCGAGAACA 58.897 52.381 0.00 0.00 0.00 3.18
496 497 2.497675 CCAAGATCCTCTCCGAGAACAA 59.502 50.000 0.00 0.00 0.00 2.83
497 498 3.055819 CCAAGATCCTCTCCGAGAACAAA 60.056 47.826 0.00 0.00 0.00 2.83
498 499 4.563580 CCAAGATCCTCTCCGAGAACAAAA 60.564 45.833 0.00 0.00 0.00 2.44
499 500 4.464069 AGATCCTCTCCGAGAACAAAAG 57.536 45.455 0.00 0.00 0.00 2.27
500 501 2.457366 TCCTCTCCGAGAACAAAAGC 57.543 50.000 0.00 0.00 0.00 3.51
501 502 1.971357 TCCTCTCCGAGAACAAAAGCT 59.029 47.619 0.00 0.00 0.00 3.74
502 503 2.368875 TCCTCTCCGAGAACAAAAGCTT 59.631 45.455 0.00 0.00 0.00 3.74
503 504 3.142174 CCTCTCCGAGAACAAAAGCTTT 58.858 45.455 5.69 5.69 0.00 3.51
504 505 4.039973 TCCTCTCCGAGAACAAAAGCTTTA 59.960 41.667 13.10 0.00 0.00 1.85
505 506 4.390297 CCTCTCCGAGAACAAAAGCTTTAG 59.610 45.833 13.10 2.77 0.00 1.85
506 507 4.315803 TCTCCGAGAACAAAAGCTTTAGG 58.684 43.478 13.10 10.52 0.00 2.69
507 508 4.039973 TCTCCGAGAACAAAAGCTTTAGGA 59.960 41.667 13.10 11.16 0.00 2.94
508 509 4.062991 TCCGAGAACAAAAGCTTTAGGAC 58.937 43.478 13.10 5.30 0.00 3.85
509 510 3.188667 CCGAGAACAAAAGCTTTAGGACC 59.811 47.826 13.10 5.78 0.00 4.46
510 511 4.065789 CGAGAACAAAAGCTTTAGGACCT 58.934 43.478 13.10 9.94 0.00 3.85
511 512 5.235516 CGAGAACAAAAGCTTTAGGACCTA 58.764 41.667 13.10 0.00 0.00 3.08
512 513 5.120363 CGAGAACAAAAGCTTTAGGACCTAC 59.880 44.000 13.10 0.31 0.00 3.18
513 514 5.937111 AGAACAAAAGCTTTAGGACCTACA 58.063 37.500 13.10 0.00 0.00 2.74
514 515 6.362248 AGAACAAAAGCTTTAGGACCTACAA 58.638 36.000 13.10 0.00 0.00 2.41
515 516 7.004691 AGAACAAAAGCTTTAGGACCTACAAT 58.995 34.615 13.10 0.00 0.00 2.71
516 517 6.819397 ACAAAAGCTTTAGGACCTACAATC 57.181 37.500 13.10 0.00 0.00 2.67
517 518 6.543735 ACAAAAGCTTTAGGACCTACAATCT 58.456 36.000 13.10 0.00 0.00 2.40
518 519 6.431234 ACAAAAGCTTTAGGACCTACAATCTG 59.569 38.462 13.10 4.24 0.00 2.90
519 520 6.374417 AAAGCTTTAGGACCTACAATCTGA 57.626 37.500 10.72 0.00 0.00 3.27
520 521 6.374417 AAGCTTTAGGACCTACAATCTGAA 57.626 37.500 0.00 0.00 0.00 3.02
521 522 6.374417 AGCTTTAGGACCTACAATCTGAAA 57.626 37.500 0.00 0.00 0.00 2.69
522 523 6.963322 AGCTTTAGGACCTACAATCTGAAAT 58.037 36.000 0.00 0.00 0.00 2.17
523 524 7.406104 AGCTTTAGGACCTACAATCTGAAATT 58.594 34.615 0.00 0.00 0.00 1.82
524 525 7.337942 AGCTTTAGGACCTACAATCTGAAATTG 59.662 37.037 0.00 0.00 35.29 2.32
525 526 7.415653 GCTTTAGGACCTACAATCTGAAATTGG 60.416 40.741 0.00 0.00 33.56 3.16
526 527 4.860022 AGGACCTACAATCTGAAATTGGG 58.140 43.478 0.00 0.00 33.56 4.12
527 528 3.381590 GGACCTACAATCTGAAATTGGGC 59.618 47.826 3.12 0.00 33.56 5.36
528 529 4.273318 GACCTACAATCTGAAATTGGGCT 58.727 43.478 3.12 0.00 33.56 5.19
529 530 4.019174 ACCTACAATCTGAAATTGGGCTG 58.981 43.478 3.12 0.00 33.56 4.85
530 531 3.382546 CCTACAATCTGAAATTGGGCTGG 59.617 47.826 3.12 0.00 33.56 4.85
531 532 2.181975 ACAATCTGAAATTGGGCTGGG 58.818 47.619 3.12 0.00 33.56 4.45
532 533 2.225343 ACAATCTGAAATTGGGCTGGGA 60.225 45.455 3.12 0.00 33.56 4.37
537 538 1.000896 AAATTGGGCTGGGACCGAG 60.001 57.895 0.00 0.00 29.56 4.63
700 704 2.352457 CTCGATCCGGCGTTCTCG 60.352 66.667 6.01 11.21 40.37 4.04
1462 1734 2.772191 AGGCAGTGGGTGGTGTCA 60.772 61.111 0.00 0.00 0.00 3.58
1572 1844 3.444916 GAAGCCGTTCATCGAGTATCAA 58.555 45.455 0.00 0.00 42.86 2.57
1920 2192 1.414181 CTGGACTCTGTGGCGGATTAT 59.586 52.381 0.00 0.00 0.00 1.28
2032 2304 1.677552 CCTGCGGTTGTTCCTAGGT 59.322 57.895 9.08 0.00 35.13 3.08
2319 2606 1.409251 TTGTGCCTTGCCAGCCAATT 61.409 50.000 0.00 0.00 31.91 2.32
2325 2612 1.180029 CTTGCCAGCCAATTAGTGCT 58.820 50.000 0.00 0.00 38.67 4.40
2880 3273 2.587322 TACCAATTGAGGGCGAGCGG 62.587 60.000 7.12 0.00 0.00 5.52
3120 3513 3.019564 GGCCTTCTGCTCATGTATTGTT 58.980 45.455 0.00 0.00 40.92 2.83
4080 4476 3.394274 TCACTTGGTCAAATGAGAGGGAA 59.606 43.478 0.00 0.00 0.00 3.97
4393 4797 2.731572 CATGGAGCCAAAGGAAGACAT 58.268 47.619 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.134521 TCTCTCTCTCTCTCTGACGGC 60.135 57.143 0.00 0.00 0.00 5.68
7 8 3.055167 CACTGGTCTCTCTCTCTCTCTGA 60.055 52.174 0.00 0.00 0.00 3.27
8 9 3.273434 CACTGGTCTCTCTCTCTCTCTG 58.727 54.545 0.00 0.00 0.00 3.35
9 10 2.356125 GCACTGGTCTCTCTCTCTCTCT 60.356 54.545 0.00 0.00 0.00 3.10
10 11 2.017049 GCACTGGTCTCTCTCTCTCTC 58.983 57.143 0.00 0.00 0.00 3.20
11 12 1.340991 GGCACTGGTCTCTCTCTCTCT 60.341 57.143 0.00 0.00 0.00 3.10
12 13 1.102978 GGCACTGGTCTCTCTCTCTC 58.897 60.000 0.00 0.00 0.00 3.20
13 14 0.679640 CGGCACTGGTCTCTCTCTCT 60.680 60.000 0.00 0.00 0.00 3.10
14 15 0.963355 ACGGCACTGGTCTCTCTCTC 60.963 60.000 0.00 0.00 0.00 3.20
15 16 1.075836 ACGGCACTGGTCTCTCTCT 59.924 57.895 0.00 0.00 0.00 3.10
16 17 1.214062 CACGGCACTGGTCTCTCTC 59.786 63.158 0.00 0.00 0.00 3.20
17 18 2.936912 GCACGGCACTGGTCTCTCT 61.937 63.158 0.00 0.00 0.00 3.10
18 19 2.433318 GCACGGCACTGGTCTCTC 60.433 66.667 0.00 0.00 0.00 3.20
19 20 4.008933 GGCACGGCACTGGTCTCT 62.009 66.667 0.00 0.00 0.00 3.10
22 23 4.643387 AAGGGCACGGCACTGGTC 62.643 66.667 1.22 0.00 43.87 4.02
23 24 4.954970 CAAGGGCACGGCACTGGT 62.955 66.667 1.22 0.00 43.87 4.00
24 25 4.954970 ACAAGGGCACGGCACTGG 62.955 66.667 1.22 1.31 43.87 4.00
25 26 3.357079 GACAAGGGCACGGCACTG 61.357 66.667 1.22 0.01 43.87 3.66
30 31 3.242897 TAACGGGACAAGGGCACGG 62.243 63.158 0.00 0.00 0.00 4.94
31 32 2.030958 GTAACGGGACAAGGGCACG 61.031 63.158 0.00 0.00 0.00 5.34
32 33 1.673337 GGTAACGGGACAAGGGCAC 60.673 63.158 0.00 0.00 0.00 5.01
33 34 2.751688 GGTAACGGGACAAGGGCA 59.248 61.111 0.00 0.00 0.00 5.36
34 35 2.045634 GGGTAACGGGACAAGGGC 60.046 66.667 0.00 0.00 37.60 5.19
35 36 1.907222 GAGGGGTAACGGGACAAGGG 61.907 65.000 0.00 0.00 37.60 3.95
36 37 1.600638 GAGGGGTAACGGGACAAGG 59.399 63.158 0.00 0.00 37.60 3.61
37 38 1.217244 CGAGGGGTAACGGGACAAG 59.783 63.158 0.00 0.00 37.60 3.16
38 39 2.285024 CCGAGGGGTAACGGGACAA 61.285 63.158 0.00 0.00 37.60 3.18
39 40 2.681064 CCGAGGGGTAACGGGACA 60.681 66.667 0.00 0.00 37.60 4.02
40 41 4.152964 GCCGAGGGGTAACGGGAC 62.153 72.222 0.00 0.00 34.97 4.46
43 44 3.846430 GAGGCCGAGGGGTAACGG 61.846 72.222 0.00 0.00 34.97 4.44
44 45 3.846430 GGAGGCCGAGGGGTAACG 61.846 72.222 0.00 0.00 34.97 3.18
45 46 2.365237 AGGAGGCCGAGGGGTAAC 60.365 66.667 0.00 0.00 34.97 2.50
46 47 2.042230 GAGGAGGCCGAGGGGTAA 60.042 66.667 0.00 0.00 34.97 2.85
47 48 4.153330 GGAGGAGGCCGAGGGGTA 62.153 72.222 0.00 0.00 34.97 3.69
51 52 4.824515 ACGAGGAGGAGGCCGAGG 62.825 72.222 0.00 0.00 0.00 4.63
52 53 3.213402 GACGAGGAGGAGGCCGAG 61.213 72.222 0.00 0.00 0.00 4.63
55 56 3.069318 AACGACGAGGAGGAGGCC 61.069 66.667 0.00 0.00 0.00 5.19
56 57 2.182030 CAACGACGAGGAGGAGGC 59.818 66.667 0.00 0.00 0.00 4.70
57 58 1.658686 CTCCAACGACGAGGAGGAGG 61.659 65.000 24.02 7.92 46.11 4.30
58 59 1.803943 CTCCAACGACGAGGAGGAG 59.196 63.158 24.02 18.35 46.11 3.69
59 60 3.998156 CTCCAACGACGAGGAGGA 58.002 61.111 24.02 14.33 46.11 3.71
62 63 1.735386 CTAGACTCCAACGACGAGGA 58.265 55.000 0.00 7.75 0.00 3.71
63 64 0.099082 GCTAGACTCCAACGACGAGG 59.901 60.000 0.00 2.99 0.00 4.63
64 65 0.099082 GGCTAGACTCCAACGACGAG 59.901 60.000 0.00 0.00 0.00 4.18
65 66 0.607217 TGGCTAGACTCCAACGACGA 60.607 55.000 0.00 0.00 0.00 4.20
66 67 0.456312 GTGGCTAGACTCCAACGACG 60.456 60.000 0.00 0.00 35.01 5.12
67 68 0.108756 GGTGGCTAGACTCCAACGAC 60.109 60.000 12.00 0.00 35.01 4.34
68 69 1.255667 GGGTGGCTAGACTCCAACGA 61.256 60.000 18.34 0.00 42.17 3.85
69 70 1.218316 GGGTGGCTAGACTCCAACG 59.782 63.158 18.34 0.00 42.17 4.10
70 71 1.218316 CGGGTGGCTAGACTCCAAC 59.782 63.158 18.34 6.69 40.54 3.77
71 72 1.229082 ACGGGTGGCTAGACTCCAA 60.229 57.895 18.34 0.00 35.01 3.53
72 73 1.681327 GACGGGTGGCTAGACTCCA 60.681 63.158 18.34 1.01 0.00 3.86
73 74 2.424733 GGACGGGTGGCTAGACTCC 61.425 68.421 8.28 8.28 0.00 3.85
74 75 1.668101 CTGGACGGGTGGCTAGACTC 61.668 65.000 0.00 0.00 0.00 3.36
75 76 1.682684 CTGGACGGGTGGCTAGACT 60.683 63.158 0.00 0.00 0.00 3.24
76 77 2.893398 CTGGACGGGTGGCTAGAC 59.107 66.667 0.00 0.00 0.00 2.59
77 78 3.075005 GCTGGACGGGTGGCTAGA 61.075 66.667 0.00 0.00 0.00 2.43
78 79 3.376935 CTGCTGGACGGGTGGCTAG 62.377 68.421 0.00 0.00 0.00 3.42
79 80 3.390521 CTGCTGGACGGGTGGCTA 61.391 66.667 0.00 0.00 0.00 3.93
82 83 4.087892 CTCCTGCTGGACGGGTGG 62.088 72.222 8.48 0.00 46.11 4.61
83 84 4.087892 CCTCCTGCTGGACGGGTG 62.088 72.222 8.48 0.00 46.11 4.61
104 105 3.499737 GAGCGTTCATGGTGGCGG 61.500 66.667 0.00 0.00 0.00 6.13
105 106 3.853330 CGAGCGTTCATGGTGGCG 61.853 66.667 0.00 0.00 0.00 5.69
106 107 4.166011 GCGAGCGTTCATGGTGGC 62.166 66.667 0.00 0.00 34.10 5.01
107 108 2.741985 TGCGAGCGTTCATGGTGG 60.742 61.111 0.00 0.00 0.00 4.61
108 109 2.743752 CCTGCGAGCGTTCATGGTG 61.744 63.158 0.00 0.00 0.00 4.17
109 110 2.434884 CCTGCGAGCGTTCATGGT 60.435 61.111 0.00 0.00 0.00 3.55
110 111 2.125552 TCCTGCGAGCGTTCATGG 60.126 61.111 0.00 0.00 0.00 3.66
111 112 3.392431 CTCCTGCGAGCGTTCATG 58.608 61.111 0.00 0.00 0.00 3.07
157 158 4.847444 GGGCGGAGGAGCTTGCTC 62.847 72.222 13.69 13.69 37.29 4.26
180 181 4.634133 AACGACAGCGCGAACGGA 62.634 61.111 12.10 0.00 42.48 4.69
181 182 3.698463 AAACGACAGCGCGAACGG 61.698 61.111 12.10 0.00 42.48 4.44
182 183 2.494728 CAAACGACAGCGCGAACG 60.495 61.111 12.10 17.83 42.48 3.95
183 184 2.791331 GCAAACGACAGCGCGAAC 60.791 61.111 12.10 0.00 42.48 3.95
184 185 2.938823 GAGCAAACGACAGCGCGAA 61.939 57.895 12.10 0.00 42.48 4.70
185 186 3.403057 GAGCAAACGACAGCGCGA 61.403 61.111 12.10 0.00 42.48 5.87
186 187 4.759893 CGAGCAAACGACAGCGCG 62.760 66.667 0.00 0.00 46.40 6.86
187 188 4.430423 CCGAGCAAACGACAGCGC 62.430 66.667 0.00 0.00 42.48 5.92
188 189 2.014093 GATCCGAGCAAACGACAGCG 62.014 60.000 0.00 0.00 44.79 5.18
189 190 1.696832 GGATCCGAGCAAACGACAGC 61.697 60.000 0.00 0.00 35.09 4.40
190 191 1.413767 CGGATCCGAGCAAACGACAG 61.414 60.000 30.62 0.00 42.83 3.51
191 192 1.445410 CGGATCCGAGCAAACGACA 60.445 57.895 30.62 0.00 42.83 4.35
192 193 2.165301 CCGGATCCGAGCAAACGAC 61.165 63.158 35.42 0.00 42.83 4.34
193 194 2.183300 CCGGATCCGAGCAAACGA 59.817 61.111 35.42 0.00 42.83 3.85
194 195 2.125673 ACCGGATCCGAGCAAACG 60.126 61.111 35.42 18.46 42.83 3.60
195 196 2.750888 GCACCGGATCCGAGCAAAC 61.751 63.158 35.42 13.95 42.83 2.93
196 197 2.435938 GCACCGGATCCGAGCAAA 60.436 61.111 35.42 0.00 42.83 3.68
197 198 4.467084 GGCACCGGATCCGAGCAA 62.467 66.667 35.72 0.00 42.83 3.91
223 224 2.124695 GTGAAGCCGGGTGGATCC 60.125 66.667 7.07 4.20 37.49 3.36
224 225 1.450312 CAGTGAAGCCGGGTGGATC 60.450 63.158 7.07 0.91 37.49 3.36
225 226 1.779061 AACAGTGAAGCCGGGTGGAT 61.779 55.000 7.07 0.00 37.49 3.41
226 227 2.391724 GAACAGTGAAGCCGGGTGGA 62.392 60.000 7.07 0.00 37.49 4.02
227 228 1.966451 GAACAGTGAAGCCGGGTGG 60.966 63.158 7.07 0.00 38.77 4.61
228 229 1.966451 GGAACAGTGAAGCCGGGTG 60.966 63.158 7.07 0.00 0.00 4.61
229 230 2.430367 GGAACAGTGAAGCCGGGT 59.570 61.111 0.00 0.00 0.00 5.28
230 231 2.359975 GGGAACAGTGAAGCCGGG 60.360 66.667 2.18 0.00 0.00 5.73
231 232 2.742372 CGGGAACAGTGAAGCCGG 60.742 66.667 0.00 0.00 0.00 6.13
232 233 2.742372 CCGGGAACAGTGAAGCCG 60.742 66.667 0.00 0.00 0.00 5.52
233 234 3.056328 GCCGGGAACAGTGAAGCC 61.056 66.667 2.18 0.00 0.00 4.35
234 235 3.423154 CGCCGGGAACAGTGAAGC 61.423 66.667 2.18 0.00 0.00 3.86
235 236 3.423154 GCGCCGGGAACAGTGAAG 61.423 66.667 2.18 0.00 0.00 3.02
236 237 3.936203 AGCGCCGGGAACAGTGAA 61.936 61.111 2.29 0.00 0.00 3.18
237 238 4.680237 CAGCGCCGGGAACAGTGA 62.680 66.667 2.29 0.00 0.00 3.41
252 253 3.207669 GAAGCATGGCTCCGGCAG 61.208 66.667 0.00 0.00 42.43 4.85
253 254 3.565961 TTGAAGCATGGCTCCGGCA 62.566 57.895 0.00 0.00 38.25 5.69
254 255 2.751436 TTGAAGCATGGCTCCGGC 60.751 61.111 0.00 0.00 38.25 6.13
255 256 1.372087 GACTTGAAGCATGGCTCCGG 61.372 60.000 0.00 0.00 38.25 5.14
256 257 1.372087 GGACTTGAAGCATGGCTCCG 61.372 60.000 0.00 0.00 38.25 4.63
257 258 1.034292 GGGACTTGAAGCATGGCTCC 61.034 60.000 0.00 0.00 38.25 4.70
258 259 1.034292 GGGGACTTGAAGCATGGCTC 61.034 60.000 0.00 0.00 38.25 4.70
259 260 1.000396 GGGGACTTGAAGCATGGCT 60.000 57.895 0.00 0.00 42.56 4.75
260 261 2.409870 CGGGGACTTGAAGCATGGC 61.410 63.158 0.00 0.00 0.00 4.40
261 262 1.026718 GTCGGGGACTTGAAGCATGG 61.027 60.000 0.00 0.00 0.00 3.66
262 263 1.361668 CGTCGGGGACTTGAAGCATG 61.362 60.000 0.00 0.00 0.00 4.06
263 264 1.079127 CGTCGGGGACTTGAAGCAT 60.079 57.895 0.00 0.00 0.00 3.79
264 265 2.342279 CGTCGGGGACTTGAAGCA 59.658 61.111 0.00 0.00 0.00 3.91
265 266 3.119096 GCGTCGGGGACTTGAAGC 61.119 66.667 0.00 0.00 32.92 3.86
266 267 2.434359 GGCGTCGGGGACTTGAAG 60.434 66.667 0.00 0.00 0.00 3.02
267 268 2.725203 CTTGGCGTCGGGGACTTGAA 62.725 60.000 0.00 0.00 0.00 2.69
268 269 3.234630 CTTGGCGTCGGGGACTTGA 62.235 63.158 0.00 0.00 0.00 3.02
269 270 2.742372 CTTGGCGTCGGGGACTTG 60.742 66.667 0.00 0.00 0.00 3.16
270 271 4.699522 GCTTGGCGTCGGGGACTT 62.700 66.667 0.00 0.00 0.00 3.01
275 276 4.379243 ACAGAGCTTGGCGTCGGG 62.379 66.667 0.00 0.00 0.00 5.14
276 277 2.811317 GACAGAGCTTGGCGTCGG 60.811 66.667 0.00 0.00 0.00 4.79
281 282 2.817396 GAGGCGACAGAGCTTGGC 60.817 66.667 0.00 0.00 37.29 4.52
282 283 2.125350 GGAGGCGACAGAGCTTGG 60.125 66.667 0.00 0.00 37.29 3.61
283 284 2.507992 CGGAGGCGACAGAGCTTG 60.508 66.667 0.00 0.00 37.29 4.01
284 285 3.764466 CCGGAGGCGACAGAGCTT 61.764 66.667 0.00 0.00 46.14 3.74
296 297 2.756283 AGGAGGTCGAAGCCGGAG 60.756 66.667 5.05 0.00 36.24 4.63
297 298 2.754658 GAGGAGGTCGAAGCCGGA 60.755 66.667 5.05 0.00 36.24 5.14
298 299 3.839432 GGAGGAGGTCGAAGCCGG 61.839 72.222 0.00 0.00 36.24 6.13
299 300 3.839432 GGGAGGAGGTCGAAGCCG 61.839 72.222 0.00 0.00 37.07 5.52
300 301 2.364448 AGGGAGGAGGTCGAAGCC 60.364 66.667 0.00 0.00 0.00 4.35
301 302 2.776913 CGAGGGAGGAGGTCGAAGC 61.777 68.421 0.00 0.00 35.70 3.86
302 303 2.776913 GCGAGGGAGGAGGTCGAAG 61.777 68.421 0.00 0.00 35.70 3.79
303 304 2.754658 GCGAGGGAGGAGGTCGAA 60.755 66.667 0.00 0.00 35.70 3.71
324 325 3.011517 TGGAGGCAGGGAAGGAGC 61.012 66.667 0.00 0.00 0.00 4.70
325 326 2.674220 GGTGGAGGCAGGGAAGGAG 61.674 68.421 0.00 0.00 0.00 3.69
326 327 2.610859 GGTGGAGGCAGGGAAGGA 60.611 66.667 0.00 0.00 0.00 3.36
327 328 4.101448 CGGTGGAGGCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
328 329 4.785453 GCGGTGGAGGCAGGGAAG 62.785 72.222 0.00 0.00 0.00 3.46
360 361 1.224965 GTAGCAAGCATAGCAGGAGC 58.775 55.000 0.00 0.00 42.56 4.70
361 362 1.871408 CGGTAGCAAGCATAGCAGGAG 60.871 57.143 0.00 0.00 0.00 3.69
362 363 0.104855 CGGTAGCAAGCATAGCAGGA 59.895 55.000 0.00 0.00 0.00 3.86
363 364 1.502163 GCGGTAGCAAGCATAGCAGG 61.502 60.000 0.00 0.00 44.35 4.85
364 365 1.937391 GCGGTAGCAAGCATAGCAG 59.063 57.895 0.00 0.00 44.35 4.24
365 366 4.124910 GCGGTAGCAAGCATAGCA 57.875 55.556 0.00 0.00 44.35 3.49
375 376 1.741770 CAGTTGGAGGTGCGGTAGC 60.742 63.158 0.00 0.00 45.41 3.58
376 377 1.741770 GCAGTTGGAGGTGCGGTAG 60.742 63.158 0.00 0.00 0.00 3.18
377 378 2.345991 GCAGTTGGAGGTGCGGTA 59.654 61.111 0.00 0.00 0.00 4.02
378 379 4.643387 GGCAGTTGGAGGTGCGGT 62.643 66.667 0.00 0.00 40.82 5.68
382 383 3.574074 CTGGGGGCAGTTGGAGGTG 62.574 68.421 0.00 0.00 0.00 4.00
383 384 3.260100 CTGGGGGCAGTTGGAGGT 61.260 66.667 0.00 0.00 0.00 3.85
384 385 4.748144 GCTGGGGGCAGTTGGAGG 62.748 72.222 0.00 0.00 41.35 4.30
385 386 3.655211 AGCTGGGGGCAGTTGGAG 61.655 66.667 0.00 0.00 44.79 3.86
386 387 3.970410 CAGCTGGGGGCAGTTGGA 61.970 66.667 5.57 0.00 44.79 3.53
387 388 3.292481 ATCAGCTGGGGGCAGTTGG 62.292 63.158 15.13 0.00 44.79 3.77
388 389 2.050350 CATCAGCTGGGGGCAGTTG 61.050 63.158 15.13 0.00 44.79 3.16
389 390 2.233566 TCATCAGCTGGGGGCAGTT 61.234 57.895 15.13 0.00 44.79 3.16
390 391 2.611800 TCATCAGCTGGGGGCAGT 60.612 61.111 15.13 0.00 44.79 4.40
391 392 2.124403 GTCATCAGCTGGGGGCAG 60.124 66.667 15.13 0.00 44.79 4.85
392 393 2.311070 ATGTCATCAGCTGGGGGCA 61.311 57.895 15.13 14.34 44.79 5.36
393 394 1.826921 CATGTCATCAGCTGGGGGC 60.827 63.158 15.13 8.56 42.19 5.80
394 395 1.152819 CCATGTCATCAGCTGGGGG 60.153 63.158 15.13 3.79 0.00 5.40
395 396 1.826921 GCCATGTCATCAGCTGGGG 60.827 63.158 15.13 6.54 0.00 4.96
396 397 1.077285 TGCCATGTCATCAGCTGGG 60.077 57.895 15.13 6.20 0.00 4.45
397 398 1.725557 GCTGCCATGTCATCAGCTGG 61.726 60.000 15.13 0.00 46.93 4.85
398 399 1.728069 GCTGCCATGTCATCAGCTG 59.272 57.895 15.81 7.63 46.93 4.24
399 400 4.237445 GCTGCCATGTCATCAGCT 57.763 55.556 15.81 0.00 46.93 4.24
401 402 0.180642 AGAGGCTGCCATGTCATCAG 59.819 55.000 22.65 0.00 0.00 2.90
402 403 0.107361 CAGAGGCTGCCATGTCATCA 60.107 55.000 22.65 0.00 0.00 3.07
403 404 0.107312 ACAGAGGCTGCCATGTCATC 60.107 55.000 22.65 8.40 34.37 2.92
404 405 0.330604 AACAGAGGCTGCCATGTCAT 59.669 50.000 24.12 11.34 34.37 3.06
405 406 0.321919 GAACAGAGGCTGCCATGTCA 60.322 55.000 24.12 0.00 34.37 3.58
406 407 1.364626 CGAACAGAGGCTGCCATGTC 61.365 60.000 24.12 13.04 34.37 3.06
407 408 1.376424 CGAACAGAGGCTGCCATGT 60.376 57.895 22.65 21.12 34.37 3.21
408 409 0.957395 AACGAACAGAGGCTGCCATG 60.957 55.000 22.65 20.45 34.37 3.66
409 410 0.957395 CAACGAACAGAGGCTGCCAT 60.957 55.000 22.65 5.96 34.37 4.40
410 411 1.597854 CAACGAACAGAGGCTGCCA 60.598 57.895 22.65 0.00 34.37 4.92
411 412 1.301716 TCAACGAACAGAGGCTGCC 60.302 57.895 11.65 11.65 34.37 4.85
412 413 1.569479 GGTCAACGAACAGAGGCTGC 61.569 60.000 0.00 0.00 34.37 5.25
413 414 0.249868 TGGTCAACGAACAGAGGCTG 60.250 55.000 0.00 0.00 37.52 4.85
414 415 0.249911 GTGGTCAACGAACAGAGGCT 60.250 55.000 0.00 0.00 26.03 4.58
415 416 1.228657 GGTGGTCAACGAACAGAGGC 61.229 60.000 0.00 0.00 26.03 4.70
416 417 0.944311 CGGTGGTCAACGAACAGAGG 60.944 60.000 1.73 0.00 45.97 3.69
417 418 2.517598 CGGTGGTCAACGAACAGAG 58.482 57.895 1.73 0.00 45.97 3.35
418 419 4.742274 CGGTGGTCAACGAACAGA 57.258 55.556 1.73 0.00 45.97 3.41
424 425 2.019951 CGGTTCTCGGTGGTCAACG 61.020 63.158 1.50 1.50 44.11 4.10
425 426 0.666577 CTCGGTTCTCGGTGGTCAAC 60.667 60.000 0.00 0.00 39.77 3.18
426 427 1.663739 CTCGGTTCTCGGTGGTCAA 59.336 57.895 0.00 0.00 39.77 3.18
427 428 2.273179 CCTCGGTTCTCGGTGGTCA 61.273 63.158 0.00 0.00 39.77 4.02
428 429 2.572284 CCTCGGTTCTCGGTGGTC 59.428 66.667 0.00 0.00 39.77 4.02
429 430 3.692406 GCCTCGGTTCTCGGTGGT 61.692 66.667 0.00 0.00 39.77 4.16
430 431 4.452733 GGCCTCGGTTCTCGGTGG 62.453 72.222 0.00 0.00 39.77 4.61
431 432 4.452733 GGGCCTCGGTTCTCGGTG 62.453 72.222 0.84 0.00 39.77 4.94
432 433 4.698625 AGGGCCTCGGTTCTCGGT 62.699 66.667 0.00 0.00 39.77 4.69
433 434 2.465055 AAAAGGGCCTCGGTTCTCGG 62.465 60.000 6.46 0.00 39.77 4.63
434 435 1.003718 AAAAGGGCCTCGGTTCTCG 60.004 57.895 6.46 0.00 40.90 4.04
435 436 0.250770 ACAAAAGGGCCTCGGTTCTC 60.251 55.000 6.46 0.00 0.00 2.87
436 437 0.537371 CACAAAAGGGCCTCGGTTCT 60.537 55.000 6.46 0.00 0.00 3.01
437 438 1.956802 CACAAAAGGGCCTCGGTTC 59.043 57.895 6.46 0.00 0.00 3.62
438 439 2.200337 GCACAAAAGGGCCTCGGTT 61.200 57.895 6.46 0.00 0.00 4.44
439 440 2.597510 GCACAAAAGGGCCTCGGT 60.598 61.111 6.46 2.12 0.00 4.69
440 441 2.282462 AGCACAAAAGGGCCTCGG 60.282 61.111 6.46 1.36 0.00 4.63
441 442 2.956987 CAGCACAAAAGGGCCTCG 59.043 61.111 6.46 0.40 0.00 4.63
442 443 1.466851 AAGCAGCACAAAAGGGCCTC 61.467 55.000 6.46 0.00 0.00 4.70
443 444 1.458209 AAGCAGCACAAAAGGGCCT 60.458 52.632 0.00 0.00 0.00 5.19
444 445 1.005748 GAAGCAGCACAAAAGGGCC 60.006 57.895 0.00 0.00 0.00 5.80
445 446 1.372128 CGAAGCAGCACAAAAGGGC 60.372 57.895 0.00 0.00 0.00 5.19
446 447 4.950744 CGAAGCAGCACAAAAGGG 57.049 55.556 0.00 0.00 0.00 3.95
467 468 1.146930 GAGGATCTTGGCGCATCCA 59.853 57.895 22.33 4.06 44.85 3.41
468 469 4.055654 GAGGATCTTGGCGCATCC 57.944 61.111 14.93 14.93 39.24 3.51
484 485 4.039973 TCCTAAAGCTTTTGTTCTCGGAGA 59.960 41.667 18.47 2.97 0.00 3.71
485 486 4.152580 GTCCTAAAGCTTTTGTTCTCGGAG 59.847 45.833 18.47 4.95 0.00 4.63
486 487 4.062991 GTCCTAAAGCTTTTGTTCTCGGA 58.937 43.478 18.47 9.08 0.00 4.55
487 488 3.188667 GGTCCTAAAGCTTTTGTTCTCGG 59.811 47.826 18.47 7.02 0.00 4.63
488 489 4.065789 AGGTCCTAAAGCTTTTGTTCTCG 58.934 43.478 18.47 2.41 29.11 4.04
489 490 5.995897 TGTAGGTCCTAAAGCTTTTGTTCTC 59.004 40.000 18.47 4.96 36.91 2.87
490 491 5.937111 TGTAGGTCCTAAAGCTTTTGTTCT 58.063 37.500 18.47 13.26 36.91 3.01
491 492 6.628919 TTGTAGGTCCTAAAGCTTTTGTTC 57.371 37.500 18.47 9.86 36.91 3.18
492 493 7.004691 AGATTGTAGGTCCTAAAGCTTTTGTT 58.995 34.615 18.47 0.00 36.91 2.83
493 494 6.431234 CAGATTGTAGGTCCTAAAGCTTTTGT 59.569 38.462 18.47 1.93 36.91 2.83
494 495 6.655003 TCAGATTGTAGGTCCTAAAGCTTTTG 59.345 38.462 18.47 15.38 36.91 2.44
495 496 6.779860 TCAGATTGTAGGTCCTAAAGCTTTT 58.220 36.000 18.47 0.00 36.91 2.27
496 497 6.374417 TCAGATTGTAGGTCCTAAAGCTTT 57.626 37.500 17.30 17.30 36.91 3.51
497 498 6.374417 TTCAGATTGTAGGTCCTAAAGCTT 57.626 37.500 0.00 0.00 36.91 3.74
498 499 6.374417 TTTCAGATTGTAGGTCCTAAAGCT 57.626 37.500 0.00 3.34 39.57 3.74
499 500 7.415653 CCAATTTCAGATTGTAGGTCCTAAAGC 60.416 40.741 0.00 1.08 0.00 3.51
500 501 7.067494 CCCAATTTCAGATTGTAGGTCCTAAAG 59.933 40.741 0.00 0.00 0.00 1.85
501 502 6.889722 CCCAATTTCAGATTGTAGGTCCTAAA 59.110 38.462 0.00 0.00 0.00 1.85
502 503 6.423182 CCCAATTTCAGATTGTAGGTCCTAA 58.577 40.000 0.00 0.00 0.00 2.69
503 504 5.631481 GCCCAATTTCAGATTGTAGGTCCTA 60.631 44.000 0.00 0.00 0.00 2.94
504 505 4.860022 CCCAATTTCAGATTGTAGGTCCT 58.140 43.478 0.00 0.00 0.00 3.85
505 506 3.381590 GCCCAATTTCAGATTGTAGGTCC 59.618 47.826 0.00 0.00 0.00 4.46
506 507 4.096984 CAGCCCAATTTCAGATTGTAGGTC 59.903 45.833 0.00 0.00 0.00 3.85
507 508 4.019174 CAGCCCAATTTCAGATTGTAGGT 58.981 43.478 0.00 0.00 0.00 3.08
508 509 3.382546 CCAGCCCAATTTCAGATTGTAGG 59.617 47.826 0.00 0.00 0.00 3.18
509 510 3.382546 CCCAGCCCAATTTCAGATTGTAG 59.617 47.826 0.00 0.00 0.00 2.74
510 511 3.011144 TCCCAGCCCAATTTCAGATTGTA 59.989 43.478 0.00 0.00 0.00 2.41
511 512 2.181975 CCCAGCCCAATTTCAGATTGT 58.818 47.619 0.00 0.00 0.00 2.71
512 513 2.167075 GTCCCAGCCCAATTTCAGATTG 59.833 50.000 0.00 0.00 0.00 2.67
513 514 2.460669 GTCCCAGCCCAATTTCAGATT 58.539 47.619 0.00 0.00 0.00 2.40
514 515 1.342374 GGTCCCAGCCCAATTTCAGAT 60.342 52.381 0.00 0.00 0.00 2.90
515 516 0.039618 GGTCCCAGCCCAATTTCAGA 59.960 55.000 0.00 0.00 0.00 3.27
516 517 1.315257 CGGTCCCAGCCCAATTTCAG 61.315 60.000 0.00 0.00 0.00 3.02
517 518 1.304052 CGGTCCCAGCCCAATTTCA 60.304 57.895 0.00 0.00 0.00 2.69
518 519 1.001393 TCGGTCCCAGCCCAATTTC 60.001 57.895 0.00 0.00 0.00 2.17
519 520 1.000896 CTCGGTCCCAGCCCAATTT 60.001 57.895 0.00 0.00 0.00 1.82
520 521 2.677228 CTCGGTCCCAGCCCAATT 59.323 61.111 0.00 0.00 0.00 2.32
521 522 4.115199 GCTCGGTCCCAGCCCAAT 62.115 66.667 0.00 0.00 0.00 3.16
527 528 4.200283 GAGAGCGCTCGGTCCCAG 62.200 72.222 30.39 0.00 42.97 4.45
528 529 4.742649 AGAGAGCGCTCGGTCCCA 62.743 66.667 30.39 0.00 45.98 4.37
529 530 4.200283 CAGAGAGCGCTCGGTCCC 62.200 72.222 30.39 17.80 45.98 4.46
530 531 4.863925 GCAGAGAGCGCTCGGTCC 62.864 72.222 30.39 20.10 45.98 4.46
531 532 4.863925 GGCAGAGAGCGCTCGGTC 62.864 72.222 30.39 23.11 45.98 4.79
543 544 4.447989 GCAGAGAGCGCAGGCAGA 62.448 66.667 11.47 0.00 43.41 4.26
700 704 1.079127 TGGCGACTTTAGAGCAGGC 60.079 57.895 0.00 0.00 0.00 4.85
734 758 2.203877 ACGGACAGGGGGCTGTTA 60.204 61.111 0.00 0.00 37.74 2.41
1406 1678 0.799917 CTCCGGCGAGATATCATGCG 60.800 60.000 9.30 6.87 38.52 4.73
1462 1734 2.743718 CGACACCCACTCTGGCTT 59.256 61.111 0.00 0.00 35.79 4.35
1572 1844 1.751924 CGGAAGAAGAGACGGATTCCT 59.248 52.381 0.30 0.00 37.80 3.36
1797 2069 1.830145 CGAGGGAATGGAATCCGGT 59.170 57.895 0.00 0.00 40.62 5.28
1920 2192 1.676678 GCGGCTCATCCCACTCACTA 61.677 60.000 0.00 0.00 0.00 2.74
2032 2304 2.324330 CGAAACGCCATGGCAGACA 61.324 57.895 34.93 0.00 42.06 3.41
2319 2606 2.679996 TCCGCCTCTGCAGCACTA 60.680 61.111 9.47 0.00 37.32 2.74
2337 2624 3.426309 ATCTGGGGCAATCAGGCGG 62.426 63.158 0.00 0.00 45.36 6.13
2391 2732 3.073062 TCTCTTTTCCCAAAGTAGCAGCT 59.927 43.478 0.00 0.00 40.47 4.24
2880 3273 0.387239 GCGAATCACAAGCCAACACC 60.387 55.000 0.00 0.00 0.00 4.16
3120 3513 1.229820 TGGGGGAGCCAGCTTCTTA 60.230 57.895 0.00 0.00 0.00 2.10
4080 4476 4.588951 TCAATCTTGGTCATAGTAGGCGAT 59.411 41.667 0.00 0.00 0.00 4.58
4393 4797 5.183713 CAGCCATGAGGACTTTTATGTTTCA 59.816 40.000 0.00 0.00 36.89 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.