Multiple sequence alignment - TraesCS6A01G203000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G203000 chr6A 100.000 5772 0 0 1 5772 342523243 342529014 0.000000e+00 10659
1 TraesCS6A01G203000 chr6A 93.275 342 21 2 429 768 12303180 12303521 2.400000e-138 503
2 TraesCS6A01G203000 chr6D 96.793 2869 61 9 2206 5061 239805173 239808023 0.000000e+00 4759
3 TraesCS6A01G203000 chr6D 97.986 1390 26 2 784 2171 239802745 239804134 0.000000e+00 2410
4 TraesCS6A01G203000 chr6D 92.564 659 42 6 5113 5769 239808150 239808803 0.000000e+00 939
5 TraesCS6A01G203000 chr6D 92.466 438 29 1 3 436 239802304 239802741 1.770000e-174 623
6 TraesCS6A01G203000 chr6B 97.270 2601 56 8 2336 4929 366735041 366737633 0.000000e+00 4396
7 TraesCS6A01G203000 chr6B 97.294 887 21 2 1288 2171 366732994 366733880 0.000000e+00 1502
8 TraesCS6A01G203000 chr6B 90.596 436 34 5 2 436 366731753 366732182 6.490000e-159 571
9 TraesCS6A01G203000 chr6B 92.162 370 9 4 792 1160 366732194 366732544 6.670000e-139 505
10 TraesCS6A01G203000 chr6B 97.619 126 3 0 2206 2331 366734812 366734937 3.500000e-52 217
11 TraesCS6A01G203000 chr1A 94.833 329 16 1 438 765 504701272 504700944 3.990000e-141 512
12 TraesCS6A01G203000 chr1A 84.259 324 49 2 5447 5769 290333414 290333736 1.210000e-81 315
13 TraesCS6A01G203000 chrUn 94.328 335 16 3 438 771 505480 505148 1.430000e-140 510
14 TraesCS6A01G203000 chr2A 92.877 351 23 2 429 777 27650729 27651079 5.160000e-140 508
15 TraesCS6A01G203000 chr7D 93.769 337 19 2 438 772 127559511 127559175 6.670000e-139 505
16 TraesCS6A01G203000 chr7D 90.685 365 28 6 419 778 298354420 298354057 1.120000e-131 481
17 TraesCS6A01G203000 chr3B 91.389 360 27 4 427 783 798651638 798651280 1.870000e-134 490
18 TraesCS6A01G203000 chr5A 91.061 358 28 4 428 782 598260579 598260935 1.120000e-131 481
19 TraesCS6A01G203000 chr5A 84.084 333 43 9 5445 5772 619338974 619338647 4.340000e-81 313
20 TraesCS6A01G203000 chr7B 90.859 361 27 5 438 796 397442467 397442823 4.050000e-131 479
21 TraesCS6A01G203000 chr5D 84.195 329 46 5 5444 5769 434290294 434289969 1.210000e-81 315
22 TraesCS6A01G203000 chr5D 83.891 329 49 4 5445 5772 495132989 495132664 1.560000e-80 311
23 TraesCS6A01G203000 chr1D 84.259 324 49 2 5447 5769 223378242 223378564 1.210000e-81 315
24 TraesCS6A01G203000 chr1D 83.436 326 51 3 5447 5769 223378906 223379231 3.380000e-77 300
25 TraesCS6A01G203000 chr3D 84.259 324 48 3 5447 5769 514372321 514372642 4.340000e-81 313
26 TraesCS6A01G203000 chr1B 83.385 325 52 2 5447 5769 322716547 322716871 3.380000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G203000 chr6A 342523243 342529014 5771 False 10659.00 10659 100.00000 1 5772 1 chr6A.!!$F2 5771
1 TraesCS6A01G203000 chr6D 239802304 239808803 6499 False 2182.75 4759 94.95225 3 5769 4 chr6D.!!$F1 5766
2 TraesCS6A01G203000 chr6B 366731753 366737633 5880 False 1438.20 4396 94.98820 2 4929 5 chr6B.!!$F1 4927
3 TraesCS6A01G203000 chr1D 223378242 223379231 989 False 307.50 315 83.84750 5447 5769 2 chr1D.!!$F1 322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 678 0.028374 AGCGTTAACGTGTTTGGTGC 59.972 50.0 27.28 8.83 42.22 5.01 F
729 738 0.320073 GACGGTCGTGATGGTTTGGA 60.320 55.0 0.00 0.00 0.00 3.53 F
730 739 0.323629 ACGGTCGTGATGGTTTGGAT 59.676 50.0 0.00 0.00 0.00 3.41 F
2203 3087 0.930726 GGAGAGGGAGAGGGAGAGAA 59.069 60.0 0.00 0.00 0.00 2.87 F
3128 4570 1.017177 ATTTTGCATGCTGCTTGCGG 61.017 50.0 28.04 0.00 45.31 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2509 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.0 0.00 3.20 R
2254 3594 5.991606 GCTACAATGCAATATGGAGAGTACA 59.008 40.000 12.51 0.0 28.23 2.90 R
2996 4437 6.924612 GGCATATTATTCATGAATGCAACACA 59.075 34.615 27.59 6.0 43.67 3.72 R
3769 5217 2.158475 TCATCCTTCACAGGCCAAAACT 60.158 45.455 5.01 0.0 40.58 2.66 R
5210 6734 0.036875 CAAGTTCGAGCCCCCTTCTT 59.963 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.410631 AGAGAGAGAGAAGACACACGA 57.589 47.619 0.00 0.00 0.00 4.35
32 33 2.040544 CACACGATGGGGAAGGTGC 61.041 63.158 0.00 0.00 33.81 5.01
42 43 2.811317 GAAGGTGCAGGAGTCGCG 60.811 66.667 0.00 0.00 0.00 5.87
50 51 4.680537 AGGAGTCGCGGGTCCTGT 62.681 66.667 24.13 6.51 41.93 4.00
77 78 2.661537 CGTGTTGACTCGCTGCCA 60.662 61.111 0.00 0.00 0.00 4.92
100 101 0.972983 ACACCAGATCTAGCACCGCT 60.973 55.000 0.00 0.00 43.41 5.52
160 161 0.030101 CCTTGCCGCTTCGAACAAAA 59.970 50.000 0.00 0.00 0.00 2.44
161 162 1.535015 CCTTGCCGCTTCGAACAAAAA 60.535 47.619 0.00 0.00 0.00 1.94
162 163 2.393764 CTTGCCGCTTCGAACAAAAAT 58.606 42.857 0.00 0.00 0.00 1.82
163 164 1.764851 TGCCGCTTCGAACAAAAATG 58.235 45.000 0.00 0.00 0.00 2.32
214 223 1.542492 GACGGTAGAGTCAGGGAACA 58.458 55.000 0.00 0.00 40.65 3.18
377 386 3.200918 TCGATGTCGAGGGGAATGA 57.799 52.632 0.21 0.00 44.22 2.57
403 412 1.134699 AGTGTCGATGTCAATGCCGAT 60.135 47.619 0.00 0.00 33.47 4.18
416 425 6.310956 TGTCAATGCCGATGAATGAAATTTTC 59.689 34.615 2.05 2.05 36.07 2.29
457 466 9.771534 TTGCATACTAGTAATAATGTATGTGCA 57.228 29.630 13.64 13.64 42.23 4.57
458 467 9.771534 TGCATACTAGTAATAATGTATGTGCAA 57.228 29.630 14.75 3.38 42.23 4.08
462 471 8.675705 ACTAGTAATAATGTATGTGCAATGCA 57.324 30.769 2.72 2.72 35.60 3.96
478 487 7.184800 TGCAATGCACGTTTATATTAGGTAG 57.815 36.000 2.72 0.00 31.71 3.18
479 488 6.203915 TGCAATGCACGTTTATATTAGGTAGG 59.796 38.462 2.72 0.00 31.71 3.18
480 489 6.425721 GCAATGCACGTTTATATTAGGTAGGA 59.574 38.462 0.00 0.00 0.00 2.94
481 490 7.119262 GCAATGCACGTTTATATTAGGTAGGAT 59.881 37.037 0.00 0.00 0.00 3.24
482 491 9.647797 CAATGCACGTTTATATTAGGTAGGATA 57.352 33.333 0.00 0.00 0.00 2.59
523 532 8.988064 ATTAGGTAAGATATATCTGTTGCACG 57.012 34.615 16.01 0.00 37.19 5.34
524 533 5.784177 AGGTAAGATATATCTGTTGCACGG 58.216 41.667 16.01 0.00 37.19 4.94
525 534 5.304614 AGGTAAGATATATCTGTTGCACGGT 59.695 40.000 16.01 0.00 37.19 4.83
526 535 5.405571 GGTAAGATATATCTGTTGCACGGTG 59.594 44.000 16.01 3.15 37.19 4.94
527 536 3.995199 AGATATATCTGTTGCACGGTGG 58.005 45.455 14.60 0.00 35.42 4.61
528 537 3.388024 AGATATATCTGTTGCACGGTGGT 59.612 43.478 14.60 0.00 35.42 4.16
529 538 4.587262 AGATATATCTGTTGCACGGTGGTA 59.413 41.667 14.60 0.00 35.42 3.25
530 539 3.838244 ATATCTGTTGCACGGTGGTAT 57.162 42.857 10.60 0.00 0.00 2.73
531 540 2.489938 ATCTGTTGCACGGTGGTATT 57.510 45.000 10.60 0.00 0.00 1.89
532 541 2.264005 TCTGTTGCACGGTGGTATTT 57.736 45.000 10.60 0.00 0.00 1.40
533 542 1.876799 TCTGTTGCACGGTGGTATTTG 59.123 47.619 10.60 0.00 0.00 2.32
534 543 1.876799 CTGTTGCACGGTGGTATTTGA 59.123 47.619 10.60 0.00 0.00 2.69
535 544 2.487762 CTGTTGCACGGTGGTATTTGAT 59.512 45.455 10.60 0.00 0.00 2.57
536 545 3.676093 TGTTGCACGGTGGTATTTGATA 58.324 40.909 10.60 0.00 0.00 2.15
537 546 4.072839 TGTTGCACGGTGGTATTTGATAA 58.927 39.130 10.60 0.00 0.00 1.75
538 547 4.155099 TGTTGCACGGTGGTATTTGATAAG 59.845 41.667 10.60 0.00 0.00 1.73
539 548 4.209307 TGCACGGTGGTATTTGATAAGA 57.791 40.909 10.60 0.00 0.00 2.10
540 549 4.776349 TGCACGGTGGTATTTGATAAGAT 58.224 39.130 10.60 0.00 0.00 2.40
541 550 5.919755 TGCACGGTGGTATTTGATAAGATA 58.080 37.500 10.60 0.00 0.00 1.98
542 551 6.530120 TGCACGGTGGTATTTGATAAGATAT 58.470 36.000 10.60 0.00 0.00 1.63
543 552 6.649141 TGCACGGTGGTATTTGATAAGATATC 59.351 38.462 10.60 0.00 0.00 1.63
544 553 6.649141 GCACGGTGGTATTTGATAAGATATCA 59.351 38.462 10.60 0.00 0.00 2.15
545 554 7.172532 GCACGGTGGTATTTGATAAGATATCAA 59.827 37.037 10.60 8.36 36.37 2.57
546 555 9.219603 CACGGTGGTATTTGATAAGATATCAAT 57.780 33.333 12.21 0.00 37.79 2.57
547 556 9.793259 ACGGTGGTATTTGATAAGATATCAATT 57.207 29.630 12.21 11.29 37.79 2.32
558 567 9.650371 TGATAAGATATCAATTTCTTTTTCGCG 57.350 29.630 0.00 0.00 34.22 5.87
559 568 9.107367 GATAAGATATCAATTTCTTTTTCGCGG 57.893 33.333 6.13 0.00 34.22 6.46
560 569 5.821204 AGATATCAATTTCTTTTTCGCGGG 58.179 37.500 6.13 0.00 0.00 6.13
561 570 5.588648 AGATATCAATTTCTTTTTCGCGGGA 59.411 36.000 6.13 0.00 0.00 5.14
562 571 3.992260 TCAATTTCTTTTTCGCGGGAA 57.008 38.095 11.32 11.32 0.00 3.97
563 572 4.513198 TCAATTTCTTTTTCGCGGGAAT 57.487 36.364 16.24 0.00 30.88 3.01
564 573 4.233789 TCAATTTCTTTTTCGCGGGAATG 58.766 39.130 16.24 8.61 30.88 2.67
565 574 2.715737 TTTCTTTTTCGCGGGAATGG 57.284 45.000 16.24 9.09 30.88 3.16
566 575 1.611519 TTCTTTTTCGCGGGAATGGT 58.388 45.000 16.24 0.00 30.88 3.55
567 576 2.476126 TCTTTTTCGCGGGAATGGTA 57.524 45.000 16.24 0.00 30.88 3.25
568 577 2.993937 TCTTTTTCGCGGGAATGGTAT 58.006 42.857 16.24 0.00 30.88 2.73
569 578 2.680841 TCTTTTTCGCGGGAATGGTATG 59.319 45.455 16.24 4.21 30.88 2.39
570 579 2.404923 TTTTCGCGGGAATGGTATGA 57.595 45.000 16.24 0.00 30.88 2.15
571 580 2.631160 TTTCGCGGGAATGGTATGAT 57.369 45.000 16.24 0.00 30.88 2.45
572 581 3.755112 TTTCGCGGGAATGGTATGATA 57.245 42.857 16.24 0.00 30.88 2.15
573 582 3.973206 TTCGCGGGAATGGTATGATAT 57.027 42.857 11.32 0.00 0.00 1.63
574 583 3.973206 TCGCGGGAATGGTATGATATT 57.027 42.857 6.13 0.00 0.00 1.28
575 584 5.408880 TTCGCGGGAATGGTATGATATTA 57.591 39.130 11.32 0.00 0.00 0.98
576 585 5.408880 TCGCGGGAATGGTATGATATTAA 57.591 39.130 6.13 0.00 0.00 1.40
577 586 5.984725 TCGCGGGAATGGTATGATATTAAT 58.015 37.500 6.13 0.00 0.00 1.40
578 587 6.411376 TCGCGGGAATGGTATGATATTAATT 58.589 36.000 6.13 0.00 0.00 1.40
579 588 7.557724 TCGCGGGAATGGTATGATATTAATTA 58.442 34.615 6.13 0.00 0.00 1.40
580 589 7.493320 TCGCGGGAATGGTATGATATTAATTAC 59.507 37.037 6.13 0.00 0.00 1.89
581 590 7.279090 CGCGGGAATGGTATGATATTAATTACA 59.721 37.037 0.00 0.00 0.00 2.41
582 591 9.120538 GCGGGAATGGTATGATATTAATTACAT 57.879 33.333 0.00 3.08 0.00 2.29
603 612 5.993891 CATGACAGATTTCATGGGATAACG 58.006 41.667 5.36 0.00 46.29 3.18
604 613 5.097742 TGACAGATTTCATGGGATAACGT 57.902 39.130 0.00 0.00 0.00 3.99
605 614 5.496556 TGACAGATTTCATGGGATAACGTT 58.503 37.500 5.88 5.88 0.00 3.99
606 615 5.353956 TGACAGATTTCATGGGATAACGTTG 59.646 40.000 11.99 0.00 0.00 4.10
607 616 5.496556 ACAGATTTCATGGGATAACGTTGA 58.503 37.500 11.99 0.00 0.00 3.18
608 617 5.586243 ACAGATTTCATGGGATAACGTTGAG 59.414 40.000 11.99 0.00 0.00 3.02
609 618 5.586243 CAGATTTCATGGGATAACGTTGAGT 59.414 40.000 11.99 0.00 0.00 3.41
610 619 5.817816 AGATTTCATGGGATAACGTTGAGTC 59.182 40.000 11.99 6.35 0.00 3.36
611 620 4.545208 TTCATGGGATAACGTTGAGTCA 57.455 40.909 11.99 4.93 0.00 3.41
612 621 4.545208 TCATGGGATAACGTTGAGTCAA 57.455 40.909 11.99 0.08 0.00 3.18
613 622 4.900684 TCATGGGATAACGTTGAGTCAAA 58.099 39.130 11.99 0.00 0.00 2.69
614 623 5.309638 TCATGGGATAACGTTGAGTCAAAA 58.690 37.500 11.99 0.00 0.00 2.44
615 624 5.943416 TCATGGGATAACGTTGAGTCAAAAT 59.057 36.000 11.99 0.00 0.00 1.82
616 625 5.621197 TGGGATAACGTTGAGTCAAAATG 57.379 39.130 11.99 3.39 0.00 2.32
617 626 5.067273 TGGGATAACGTTGAGTCAAAATGT 58.933 37.500 11.99 4.04 0.00 2.71
618 627 5.049060 TGGGATAACGTTGAGTCAAAATGTG 60.049 40.000 11.99 0.00 0.00 3.21
619 628 5.048991 GGGATAACGTTGAGTCAAAATGTGT 60.049 40.000 11.99 0.00 0.00 3.72
620 629 6.435428 GGATAACGTTGAGTCAAAATGTGTT 58.565 36.000 11.99 9.82 0.00 3.32
621 630 6.915843 GGATAACGTTGAGTCAAAATGTGTTT 59.084 34.615 11.99 0.00 0.00 2.83
622 631 8.071368 GGATAACGTTGAGTCAAAATGTGTTTA 58.929 33.333 11.99 0.00 0.00 2.01
623 632 9.607285 GATAACGTTGAGTCAAAATGTGTTTAT 57.393 29.630 11.99 2.63 0.00 1.40
626 635 8.776680 ACGTTGAGTCAAAATGTGTTTATAAC 57.223 30.769 7.25 0.00 0.00 1.89
627 636 8.399425 ACGTTGAGTCAAAATGTGTTTATAACA 58.601 29.630 7.25 0.00 39.52 2.41
628 637 9.227490 CGTTGAGTCAAAATGTGTTTATAACAA 57.773 29.630 7.25 0.00 44.16 2.83
633 642 8.987890 AGTCAAAATGTGTTTATAACAAATGGC 58.012 29.630 0.00 0.00 44.16 4.40
634 643 8.768955 GTCAAAATGTGTTTATAACAAATGGCA 58.231 29.630 0.00 0.00 44.16 4.92
635 644 8.986847 TCAAAATGTGTTTATAACAAATGGCAG 58.013 29.630 0.00 0.00 44.16 4.85
636 645 8.772705 CAAAATGTGTTTATAACAAATGGCAGT 58.227 29.630 0.00 0.00 44.16 4.40
637 646 9.988815 AAAATGTGTTTATAACAAATGGCAGTA 57.011 25.926 0.00 0.00 44.16 2.74
638 647 9.638239 AAATGTGTTTATAACAAATGGCAGTAG 57.362 29.630 0.00 0.00 44.16 2.57
639 648 7.753309 TGTGTTTATAACAAATGGCAGTAGT 57.247 32.000 0.00 0.00 44.16 2.73
640 649 7.589395 TGTGTTTATAACAAATGGCAGTAGTG 58.411 34.615 0.00 0.00 44.16 2.74
641 650 7.027161 GTGTTTATAACAAATGGCAGTAGTGG 58.973 38.462 0.00 0.00 44.16 4.00
642 651 6.151985 TGTTTATAACAAATGGCAGTAGTGGG 59.848 38.462 0.00 0.00 38.72 4.61
643 652 2.675658 AACAAATGGCAGTAGTGGGT 57.324 45.000 0.00 0.00 0.00 4.51
644 653 3.799432 AACAAATGGCAGTAGTGGGTA 57.201 42.857 0.00 0.00 0.00 3.69
645 654 3.799432 ACAAATGGCAGTAGTGGGTAA 57.201 42.857 0.00 0.00 0.00 2.85
646 655 4.316025 ACAAATGGCAGTAGTGGGTAAT 57.684 40.909 0.00 0.00 0.00 1.89
647 656 4.672899 ACAAATGGCAGTAGTGGGTAATT 58.327 39.130 0.00 0.00 0.00 1.40
648 657 5.822204 ACAAATGGCAGTAGTGGGTAATTA 58.178 37.500 0.00 0.00 0.00 1.40
649 658 5.885912 ACAAATGGCAGTAGTGGGTAATTAG 59.114 40.000 0.00 0.00 0.00 1.73
650 659 5.968676 AATGGCAGTAGTGGGTAATTAGA 57.031 39.130 0.00 0.00 0.00 2.10
651 660 5.552870 ATGGCAGTAGTGGGTAATTAGAG 57.447 43.478 0.00 0.00 0.00 2.43
652 661 3.134081 TGGCAGTAGTGGGTAATTAGAGC 59.866 47.826 0.00 0.00 0.00 4.09
653 662 3.381949 GCAGTAGTGGGTAATTAGAGCG 58.618 50.000 0.00 0.00 0.00 5.03
654 663 3.181478 GCAGTAGTGGGTAATTAGAGCGT 60.181 47.826 0.00 0.00 0.00 5.07
655 664 4.679905 GCAGTAGTGGGTAATTAGAGCGTT 60.680 45.833 0.00 0.00 0.00 4.84
656 665 5.450965 GCAGTAGTGGGTAATTAGAGCGTTA 60.451 44.000 0.00 0.00 0.00 3.18
657 666 6.567050 CAGTAGTGGGTAATTAGAGCGTTAA 58.433 40.000 0.00 0.00 0.00 2.01
658 667 6.474751 CAGTAGTGGGTAATTAGAGCGTTAAC 59.525 42.308 0.00 0.00 0.00 2.01
659 668 4.427312 AGTGGGTAATTAGAGCGTTAACG 58.573 43.478 23.40 23.40 43.27 3.18
660 669 4.082026 AGTGGGTAATTAGAGCGTTAACGT 60.082 41.667 27.28 15.14 42.22 3.99
661 670 4.032104 GTGGGTAATTAGAGCGTTAACGTG 59.968 45.833 27.28 2.98 42.22 4.49
662 671 4.176271 GGGTAATTAGAGCGTTAACGTGT 58.824 43.478 27.28 16.18 42.22 4.49
663 672 4.627035 GGGTAATTAGAGCGTTAACGTGTT 59.373 41.667 27.28 14.48 42.22 3.32
664 673 5.120674 GGGTAATTAGAGCGTTAACGTGTTT 59.879 40.000 27.28 13.78 42.22 2.83
665 674 6.011277 GGTAATTAGAGCGTTAACGTGTTTG 58.989 40.000 27.28 0.73 42.22 2.93
666 675 4.657075 ATTAGAGCGTTAACGTGTTTGG 57.343 40.909 27.28 0.00 42.22 3.28
667 676 1.944032 AGAGCGTTAACGTGTTTGGT 58.056 45.000 27.28 5.14 42.22 3.67
668 677 1.595794 AGAGCGTTAACGTGTTTGGTG 59.404 47.619 27.28 0.00 42.22 4.17
669 678 0.028374 AGCGTTAACGTGTTTGGTGC 59.972 50.000 27.28 8.83 42.22 5.01
670 679 0.028374 GCGTTAACGTGTTTGGTGCT 59.972 50.000 27.28 0.00 42.22 4.40
671 680 1.918543 GCGTTAACGTGTTTGGTGCTC 60.919 52.381 27.28 4.16 42.22 4.26
672 681 1.328069 CGTTAACGTGTTTGGTGCTCA 59.672 47.619 19.75 0.00 34.11 4.26
673 682 2.223066 CGTTAACGTGTTTGGTGCTCAA 60.223 45.455 19.75 0.00 34.11 3.02
674 683 3.103007 GTTAACGTGTTTGGTGCTCAAC 58.897 45.455 0.00 0.00 34.67 3.18
675 684 1.169577 AACGTGTTTGGTGCTCAACA 58.830 45.000 0.00 0.00 34.67 3.33
676 685 1.388547 ACGTGTTTGGTGCTCAACAT 58.611 45.000 0.00 0.00 34.67 2.71
677 686 1.748493 ACGTGTTTGGTGCTCAACATT 59.252 42.857 0.00 0.00 34.67 2.71
678 687 2.118683 CGTGTTTGGTGCTCAACATTG 58.881 47.619 0.00 0.00 34.67 2.82
679 688 2.472816 GTGTTTGGTGCTCAACATTGG 58.527 47.619 0.00 0.00 34.67 3.16
680 689 2.100584 GTGTTTGGTGCTCAACATTGGA 59.899 45.455 0.00 0.00 34.67 3.53
681 690 2.361757 TGTTTGGTGCTCAACATTGGAG 59.638 45.455 0.00 0.00 34.67 3.86
690 699 4.424061 CTCAACATTGGAGCGATTTCAA 57.576 40.909 0.00 0.00 0.00 2.69
691 700 4.159377 TCAACATTGGAGCGATTTCAAC 57.841 40.909 0.00 0.00 0.00 3.18
692 701 3.057596 TCAACATTGGAGCGATTTCAACC 60.058 43.478 0.00 0.00 0.00 3.77
693 702 1.468520 ACATTGGAGCGATTTCAACCG 59.531 47.619 0.00 0.00 0.00 4.44
702 711 4.992381 GCGATTTCAACCGCTAGATAAT 57.008 40.909 0.00 0.00 46.96 1.28
704 713 6.648725 GCGATTTCAACCGCTAGATAATAT 57.351 37.500 0.00 0.00 46.96 1.28
705 714 6.470160 GCGATTTCAACCGCTAGATAATATG 58.530 40.000 0.00 0.00 46.96 1.78
706 715 6.310467 GCGATTTCAACCGCTAGATAATATGA 59.690 38.462 0.00 0.00 46.96 2.15
707 716 7.010552 GCGATTTCAACCGCTAGATAATATGAT 59.989 37.037 0.00 0.00 46.96 2.45
708 717 8.873830 CGATTTCAACCGCTAGATAATATGATT 58.126 33.333 0.00 0.00 0.00 2.57
711 720 9.554395 TTTCAACCGCTAGATAATATGATTTGA 57.446 29.630 0.00 0.00 0.00 2.69
712 721 8.534333 TCAACCGCTAGATAATATGATTTGAC 57.466 34.615 0.00 0.00 0.00 3.18
713 722 7.328493 TCAACCGCTAGATAATATGATTTGACG 59.672 37.037 0.00 0.00 0.00 4.35
714 723 6.100004 ACCGCTAGATAATATGATTTGACGG 58.900 40.000 0.00 0.00 40.13 4.79
715 724 6.100004 CCGCTAGATAATATGATTTGACGGT 58.900 40.000 0.00 0.00 0.00 4.83
716 725 6.253727 CCGCTAGATAATATGATTTGACGGTC 59.746 42.308 0.00 0.00 0.00 4.79
717 726 6.021390 CGCTAGATAATATGATTTGACGGTCG 60.021 42.308 3.34 0.00 0.00 4.79
718 727 6.807230 GCTAGATAATATGATTTGACGGTCGT 59.193 38.462 3.34 0.00 0.00 4.34
719 728 7.201359 GCTAGATAATATGATTTGACGGTCGTG 60.201 40.741 0.00 0.00 0.00 4.35
720 729 6.745116 AGATAATATGATTTGACGGTCGTGA 58.255 36.000 0.00 0.00 0.00 4.35
721 730 7.378966 AGATAATATGATTTGACGGTCGTGAT 58.621 34.615 0.00 0.00 0.00 3.06
722 731 5.657470 AATATGATTTGACGGTCGTGATG 57.343 39.130 0.00 0.00 0.00 3.07
723 732 1.720805 TGATTTGACGGTCGTGATGG 58.279 50.000 0.00 0.00 0.00 3.51
724 733 1.001520 TGATTTGACGGTCGTGATGGT 59.998 47.619 0.00 0.00 0.00 3.55
725 734 2.073816 GATTTGACGGTCGTGATGGTT 58.926 47.619 0.00 0.00 0.00 3.67
726 735 1.956297 TTTGACGGTCGTGATGGTTT 58.044 45.000 0.00 0.00 0.00 3.27
727 736 1.222300 TTGACGGTCGTGATGGTTTG 58.778 50.000 0.00 0.00 0.00 2.93
728 737 0.601576 TGACGGTCGTGATGGTTTGG 60.602 55.000 0.00 0.00 0.00 3.28
729 738 0.320073 GACGGTCGTGATGGTTTGGA 60.320 55.000 0.00 0.00 0.00 3.53
730 739 0.323629 ACGGTCGTGATGGTTTGGAT 59.676 50.000 0.00 0.00 0.00 3.41
731 740 1.006832 CGGTCGTGATGGTTTGGATC 58.993 55.000 0.00 0.00 0.00 3.36
732 741 1.405526 CGGTCGTGATGGTTTGGATCT 60.406 52.381 0.00 0.00 0.00 2.75
733 742 2.009774 GGTCGTGATGGTTTGGATCTG 58.990 52.381 0.00 0.00 0.00 2.90
734 743 2.615493 GGTCGTGATGGTTTGGATCTGT 60.615 50.000 0.00 0.00 0.00 3.41
735 744 2.673368 GTCGTGATGGTTTGGATCTGTC 59.327 50.000 0.00 0.00 0.00 3.51
736 745 2.009774 CGTGATGGTTTGGATCTGTCC 58.990 52.381 0.00 0.00 45.31 4.02
737 746 2.369394 GTGATGGTTTGGATCTGTCCC 58.631 52.381 0.00 0.00 44.41 4.46
738 747 2.025887 GTGATGGTTTGGATCTGTCCCT 60.026 50.000 0.00 0.00 44.41 4.20
739 748 2.649312 TGATGGTTTGGATCTGTCCCTT 59.351 45.455 0.00 0.00 44.41 3.95
740 749 3.075882 TGATGGTTTGGATCTGTCCCTTT 59.924 43.478 0.00 0.00 44.41 3.11
741 750 2.875296 TGGTTTGGATCTGTCCCTTTG 58.125 47.619 0.00 0.00 44.41 2.77
742 751 2.171003 GGTTTGGATCTGTCCCTTTGG 58.829 52.381 0.00 0.00 44.41 3.28
743 752 2.225017 GGTTTGGATCTGTCCCTTTGGA 60.225 50.000 0.00 0.00 44.41 3.53
744 753 3.564352 GGTTTGGATCTGTCCCTTTGGAT 60.564 47.826 0.00 0.00 44.28 3.41
745 754 3.652057 TTGGATCTGTCCCTTTGGATC 57.348 47.619 0.00 0.00 44.28 3.36
746 755 2.850833 TGGATCTGTCCCTTTGGATCT 58.149 47.619 0.00 0.00 44.28 2.75
747 756 3.192944 TGGATCTGTCCCTTTGGATCTT 58.807 45.455 0.00 0.00 44.28 2.40
748 757 3.593328 TGGATCTGTCCCTTTGGATCTTT 59.407 43.478 0.00 0.00 44.28 2.52
749 758 4.044571 TGGATCTGTCCCTTTGGATCTTTT 59.955 41.667 0.00 0.00 44.28 2.27
750 759 5.019470 GGATCTGTCCCTTTGGATCTTTTT 58.981 41.667 0.00 0.00 44.28 1.94
751 760 6.187682 GGATCTGTCCCTTTGGATCTTTTTA 58.812 40.000 0.00 0.00 44.28 1.52
752 761 6.836007 GGATCTGTCCCTTTGGATCTTTTTAT 59.164 38.462 0.00 0.00 44.28 1.40
753 762 7.998964 GGATCTGTCCCTTTGGATCTTTTTATA 59.001 37.037 0.00 0.00 44.28 0.98
754 763 9.579932 GATCTGTCCCTTTGGATCTTTTTATAT 57.420 33.333 0.00 0.00 44.28 0.86
755 764 9.942526 ATCTGTCCCTTTGGATCTTTTTATATT 57.057 29.630 0.00 0.00 44.28 1.28
756 765 9.189156 TCTGTCCCTTTGGATCTTTTTATATTG 57.811 33.333 0.00 0.00 44.28 1.90
757 766 8.305046 TGTCCCTTTGGATCTTTTTATATTGG 57.695 34.615 0.00 0.00 44.28 3.16
758 767 7.898636 TGTCCCTTTGGATCTTTTTATATTGGT 59.101 33.333 0.00 0.00 44.28 3.67
759 768 9.416284 GTCCCTTTGGATCTTTTTATATTGGTA 57.584 33.333 0.00 0.00 44.28 3.25
796 805 4.951094 AGATAGATAGTGGTAATCGCCTCC 59.049 45.833 0.00 0.00 0.00 4.30
821 830 7.398024 CATTAAATGGGATTAGAGGGACTAGG 58.602 42.308 0.00 0.00 41.55 3.02
837 846 9.767228 GAGGGACTAGGAGTATTAATTTTCTTC 57.233 37.037 0.00 0.00 41.55 2.87
846 855 8.665685 GGAGTATTAATTTTCTTCGCTTTCTCA 58.334 33.333 0.00 0.00 0.00 3.27
1225 1236 3.684305 TCTGTTCCTTGCATCGTACATTG 59.316 43.478 0.00 0.00 0.00 2.82
1257 1268 3.732721 GCTGTTCTGATGTGCACTTTTTC 59.267 43.478 19.41 10.12 0.00 2.29
1339 1672 9.932207 TGGTCTAACGAAATAATTGTAAGAAGA 57.068 29.630 0.00 0.00 0.00 2.87
1376 1709 5.241506 CCTCTTACAAATTGGACAGCTTTGA 59.758 40.000 13.09 0.00 34.69 2.69
1735 2068 7.093727 ACCTAGATTTGATAGTATGGTCATCCG 60.094 40.741 0.00 0.00 36.30 4.18
1770 2105 8.845227 TGTATAAGACTGCAAGATTTTTGACAA 58.155 29.630 0.00 0.00 37.43 3.18
2171 2507 5.294552 GGTAACTTTATGTGCTGCTTAGGAG 59.705 44.000 0.00 0.00 0.00 3.69
2173 2509 3.209410 CTTTATGTGCTGCTTAGGAGGG 58.791 50.000 2.39 0.00 0.00 4.30
2190 3074 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
2196 3080 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
2203 3087 0.930726 GGAGAGGGAGAGGGAGAGAA 59.069 60.000 0.00 0.00 0.00 2.87
2204 3088 1.133482 GGAGAGGGAGAGGGAGAGAAG 60.133 61.905 0.00 0.00 0.00 2.85
2310 3650 5.653255 AAATTGCTATATCCTGTGTCCCT 57.347 39.130 0.00 0.00 0.00 4.20
2443 3882 4.652822 GGTTCATTACCTTGTCTGTTCCT 58.347 43.478 0.00 0.00 44.10 3.36
2875 4316 5.047802 ACTGTTCATTGTATCCCTGCTTTTG 60.048 40.000 0.00 0.00 0.00 2.44
3023 4464 6.924612 TGTTGCATTCATGAATAATATGCCAC 59.075 34.615 20.32 20.25 40.56 5.01
3072 4514 6.344500 AGCCTTGTATATCAGTTTCACAGAG 58.656 40.000 0.00 0.00 0.00 3.35
3128 4570 1.017177 ATTTTGCATGCTGCTTGCGG 61.017 50.000 28.04 0.00 45.31 5.69
3160 4602 2.111043 CTGTTGGTGGCACCGTCT 59.889 61.111 30.14 0.00 42.58 4.18
3615 5063 5.047092 CCCACTTGCATTCCTTTGTTAGATT 60.047 40.000 0.00 0.00 0.00 2.40
3620 5068 8.103305 ACTTGCATTCCTTTGTTAGATTCTCTA 58.897 33.333 0.00 0.00 0.00 2.43
3769 5217 5.010719 AGACCACATTTAGAGAACTCGTTCA 59.989 40.000 11.90 0.00 41.84 3.18
3812 5260 0.033504 GAGAGCGACCAAAGTGGACA 59.966 55.000 0.18 0.00 40.96 4.02
3828 5276 9.219603 CAAAGTGGACATCAAGACTTTTCTATA 57.780 33.333 0.00 0.00 36.69 1.31
3986 5434 5.997129 TCAATGAAGTGTTCTATCAAGCACA 59.003 36.000 0.00 0.00 34.59 4.57
4238 5686 4.469586 TCAGTATAGATGTGGTTCTTGCCA 59.530 41.667 0.00 0.00 35.93 4.92
4437 5887 9.950496 GATGGATAAACATACTGAGGATAATGT 57.050 33.333 0.00 0.00 0.00 2.71
4488 5938 3.123621 GCCACAACGAGTACTGAAGAATG 59.876 47.826 0.00 0.19 0.00 2.67
4797 6247 3.257375 TGCGTGTTTCACAGGATAGTAGT 59.743 43.478 0.83 0.00 36.17 2.73
4809 6259 9.121658 TCACAGGATAGTAGTAGTAGATTTGTG 57.878 37.037 11.63 11.63 0.00 3.33
4856 6306 6.758416 GGGATTTTTATTTTGATGGCTCTCAC 59.242 38.462 0.00 0.00 0.00 3.51
4907 6357 0.110486 TGCAGTCCTCACTTTTCCCC 59.890 55.000 0.00 0.00 0.00 4.81
4939 6389 2.100197 GGTCCATCCTTACAAAAGCCC 58.900 52.381 0.00 0.00 0.00 5.19
4964 6414 1.609841 GGGGGTTTTACTGTCTGGTCG 60.610 57.143 0.00 0.00 0.00 4.79
4976 6426 2.693591 TGTCTGGTCGAAGTCTTTGACT 59.306 45.455 25.58 0.00 45.64 3.41
4978 6428 2.956333 TCTGGTCGAAGTCTTTGACTGA 59.044 45.455 25.58 21.10 42.59 3.41
4983 6433 4.859798 GGTCGAAGTCTTTGACTGATACTG 59.140 45.833 25.58 0.00 42.59 2.74
4986 6436 4.322049 CGAAGTCTTTGACTGATACTGGGT 60.322 45.833 0.67 0.00 42.59 4.51
4992 6442 1.977854 TGACTGATACTGGGTGCACTT 59.022 47.619 17.98 1.41 0.00 3.16
4999 6449 0.396811 ACTGGGTGCACTTGTAGGTC 59.603 55.000 17.98 0.00 0.00 3.85
5007 6457 0.170561 CACTTGTAGGTCGAGGACGG 59.829 60.000 0.00 0.00 40.21 4.79
5011 6461 4.051167 TAGGTCGAGGACGGGGCA 62.051 66.667 0.00 0.00 40.21 5.36
5036 6486 1.654220 CGTTGGTTGGGCAACTGAG 59.346 57.895 0.00 0.00 40.94 3.35
5052 6502 1.607467 GAGGTTGTTGCCAGCCCAT 60.607 57.895 0.00 0.00 42.60 4.00
5054 6504 2.568090 GTTGTTGCCAGCCCATCG 59.432 61.111 0.00 0.00 0.00 3.84
5055 6505 1.971167 GTTGTTGCCAGCCCATCGA 60.971 57.895 0.00 0.00 0.00 3.59
5056 6506 1.675310 TTGTTGCCAGCCCATCGAG 60.675 57.895 0.00 0.00 0.00 4.04
5057 6507 2.045926 GTTGCCAGCCCATCGAGT 60.046 61.111 0.00 0.00 0.00 4.18
5060 6548 2.123248 TTGCCAGCCCATCGAGTTCA 62.123 55.000 0.00 0.00 0.00 3.18
5066 6554 1.004745 AGCCCATCGAGTTCATGGTTT 59.995 47.619 1.54 0.00 39.50 3.27
5069 6557 2.617788 CCCATCGAGTTCATGGTTTGGA 60.618 50.000 1.54 0.00 39.50 3.53
5072 6560 0.165944 CGAGTTCATGGTTTGGACGC 59.834 55.000 0.00 0.00 39.03 5.19
5081 6569 3.641986 TTTGGACGCGCGGTGTTC 61.642 61.111 35.22 21.81 0.00 3.18
5082 6570 4.893601 TTGGACGCGCGGTGTTCA 62.894 61.111 35.22 15.91 28.78 3.18
5119 6608 8.424918 TCTTAAAACAATGCCAATGAAGGTTAA 58.575 29.630 0.00 0.00 0.00 2.01
5134 6623 2.993863 AGGTTAATCCTTGGGTTGGTCT 59.006 45.455 0.00 0.00 45.67 3.85
5136 6625 4.604490 AGGTTAATCCTTGGGTTGGTCTTA 59.396 41.667 0.00 0.00 45.67 2.10
5219 6743 9.343539 GCTTATTATTATGCTATAAGAAGGGGG 57.656 37.037 15.93 4.96 38.67 5.40
5222 6746 4.910458 TTATGCTATAAGAAGGGGGCTC 57.090 45.455 0.00 0.00 0.00 4.70
5298 6822 7.735326 TTATTATGCTATAGGAAGGGGACTC 57.265 40.000 0.00 0.00 42.68 3.36
5325 6849 2.308690 GAGACCACCCGCTTATAGAGT 58.691 52.381 0.00 0.00 0.00 3.24
5336 6860 3.114065 GCTTATAGAGTAGCGCAAACGT 58.886 45.455 11.47 3.19 42.83 3.99
5340 6864 1.860676 AGAGTAGCGCAAACGTCAAA 58.139 45.000 11.47 0.00 42.83 2.69
5346 6870 0.040425 GCGCAAACGTCAAATGACCT 60.040 50.000 0.30 0.00 41.86 3.85
5361 6885 8.296713 GTCAAATGACCTAATGTGTAAATGTGT 58.703 33.333 2.04 0.00 39.07 3.72
5374 6898 9.968870 ATGTGTAAATGTGTTTTTATAACCGTT 57.031 25.926 0.00 0.00 0.00 4.44
5442 6967 9.914131 GTTTTCTTGCCTAGTATTTGAAATTCT 57.086 29.630 0.00 0.00 0.00 2.40
5554 7079 1.269723 GGCCACTAACCAAGTTTCAGC 59.730 52.381 0.00 0.00 35.76 4.26
5584 7109 6.767902 TCAGAGTAATATTGCCTTGTTCCATC 59.232 38.462 0.00 0.00 0.00 3.51
5622 7147 8.897752 GTTTTAGTGAATTATCAGATCTTGCCT 58.102 33.333 0.00 0.00 35.88 4.75
5674 7200 5.236047 TGGTTCTGAAAATTGCCAAAAATCG 59.764 36.000 0.00 0.00 0.00 3.34
5707 7233 4.519540 AATGTTGGTGGTGCATAAACTC 57.480 40.909 0.00 0.00 0.00 3.01
5709 7235 1.199097 GTTGGTGGTGCATAAACTCGG 59.801 52.381 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.410631 TCGTGTGTCTTCTCTCTCTCT 57.589 47.619 0.00 0.00 0.00 3.10
11 12 0.836400 ACCTTCCCCATCGTGTGTCT 60.836 55.000 0.00 0.00 0.00 3.41
15 16 2.351276 GCACCTTCCCCATCGTGT 59.649 61.111 0.00 0.00 0.00 4.49
20 21 1.542375 ACTCCTGCACCTTCCCCAT 60.542 57.895 0.00 0.00 0.00 4.00
32 33 4.135153 CAGGACCCGCGACTCCTG 62.135 72.222 27.38 27.38 45.97 3.86
42 43 4.131088 GAGCCGTCGACAGGACCC 62.131 72.222 24.32 10.94 42.99 4.46
77 78 0.818296 GTGCTAGATCTGGTGTCGGT 59.182 55.000 5.18 0.00 0.00 4.69
100 101 2.030412 ACGTTGGATCTGCGTGCA 59.970 55.556 8.44 0.00 37.47 4.57
127 128 1.084370 GCAAGGAATCGTCGGACCTG 61.084 60.000 1.91 0.00 32.73 4.00
214 223 1.683011 CCAACATTCCTCGGCTCCATT 60.683 52.381 0.00 0.00 0.00 3.16
282 291 1.700042 GGCGATTCTCCACCATCCCT 61.700 60.000 0.00 0.00 0.00 4.20
371 380 2.743636 TCGACACTCACCTTCATTCC 57.256 50.000 0.00 0.00 0.00 3.01
377 386 3.329386 CATTGACATCGACACTCACCTT 58.671 45.455 0.00 0.00 0.00 3.50
436 445 9.771534 TGCATTGCACATACATTATTACTAGTA 57.228 29.630 7.38 0.00 31.71 1.82
454 463 6.203915 CCTACCTAATATAAACGTGCATTGCA 59.796 38.462 7.38 7.38 35.60 4.08
455 464 6.425721 TCCTACCTAATATAAACGTGCATTGC 59.574 38.462 0.46 0.46 0.00 3.56
456 465 7.956420 TCCTACCTAATATAAACGTGCATTG 57.044 36.000 0.00 0.00 0.00 2.82
498 507 8.035394 CCGTGCAACAGATATATCTTACCTAAT 58.965 37.037 12.75 0.00 35.74 1.73
499 508 7.014905 ACCGTGCAACAGATATATCTTACCTAA 59.985 37.037 12.75 0.00 35.74 2.69
500 509 6.492429 ACCGTGCAACAGATATATCTTACCTA 59.508 38.462 12.75 0.00 35.74 3.08
501 510 5.304614 ACCGTGCAACAGATATATCTTACCT 59.695 40.000 12.75 0.00 35.74 3.08
502 511 5.405571 CACCGTGCAACAGATATATCTTACC 59.594 44.000 12.75 3.07 35.74 2.85
503 512 5.405571 CCACCGTGCAACAGATATATCTTAC 59.594 44.000 12.75 6.63 35.74 2.34
504 513 5.069914 ACCACCGTGCAACAGATATATCTTA 59.930 40.000 12.75 0.00 35.74 2.10
505 514 4.141711 ACCACCGTGCAACAGATATATCTT 60.142 41.667 12.75 2.49 35.74 2.40
506 515 3.388024 ACCACCGTGCAACAGATATATCT 59.612 43.478 9.57 9.57 35.74 1.98
507 516 3.728845 ACCACCGTGCAACAGATATATC 58.271 45.455 4.42 4.42 35.74 1.63
508 517 3.838244 ACCACCGTGCAACAGATATAT 57.162 42.857 0.00 0.00 35.74 0.86
509 518 4.948341 ATACCACCGTGCAACAGATATA 57.052 40.909 0.00 0.00 35.74 0.86
510 519 3.838244 ATACCACCGTGCAACAGATAT 57.162 42.857 0.00 0.00 35.74 1.63
511 520 3.620427 AATACCACCGTGCAACAGATA 57.380 42.857 0.00 0.00 35.74 1.98
512 521 2.487762 CAAATACCACCGTGCAACAGAT 59.512 45.455 0.00 0.00 35.74 2.90
513 522 1.876799 CAAATACCACCGTGCAACAGA 59.123 47.619 0.00 0.00 35.74 3.41
514 523 1.876799 TCAAATACCACCGTGCAACAG 59.123 47.619 0.00 0.00 35.74 3.16
515 524 1.968704 TCAAATACCACCGTGCAACA 58.031 45.000 0.00 0.00 35.74 3.33
516 525 4.393680 TCTTATCAAATACCACCGTGCAAC 59.606 41.667 0.00 0.00 0.00 4.17
517 526 4.580868 TCTTATCAAATACCACCGTGCAA 58.419 39.130 0.00 0.00 0.00 4.08
518 527 4.209307 TCTTATCAAATACCACCGTGCA 57.791 40.909 0.00 0.00 0.00 4.57
519 528 6.649141 TGATATCTTATCAAATACCACCGTGC 59.351 38.462 3.98 0.00 0.00 5.34
520 529 8.601845 TTGATATCTTATCAAATACCACCGTG 57.398 34.615 3.98 0.00 35.35 4.94
521 530 9.793259 AATTGATATCTTATCAAATACCACCGT 57.207 29.630 12.50 0.00 40.84 4.83
532 541 9.650371 CGCGAAAAAGAAATTGATATCTTATCA 57.350 29.630 0.00 0.00 34.90 2.15
533 542 9.107367 CCGCGAAAAAGAAATTGATATCTTATC 57.893 33.333 8.23 0.00 34.90 1.75
534 543 8.076178 CCCGCGAAAAAGAAATTGATATCTTAT 58.924 33.333 8.23 0.00 34.90 1.73
535 544 7.281324 TCCCGCGAAAAAGAAATTGATATCTTA 59.719 33.333 8.23 0.00 34.90 2.10
536 545 6.094881 TCCCGCGAAAAAGAAATTGATATCTT 59.905 34.615 8.23 0.00 37.49 2.40
537 546 5.588648 TCCCGCGAAAAAGAAATTGATATCT 59.411 36.000 8.23 0.00 0.00 1.98
538 547 5.816919 TCCCGCGAAAAAGAAATTGATATC 58.183 37.500 8.23 0.00 0.00 1.63
539 548 5.828299 TCCCGCGAAAAAGAAATTGATAT 57.172 34.783 8.23 0.00 0.00 1.63
540 549 5.630661 TTCCCGCGAAAAAGAAATTGATA 57.369 34.783 8.23 0.00 0.00 2.15
541 550 4.513198 TTCCCGCGAAAAAGAAATTGAT 57.487 36.364 8.23 0.00 0.00 2.57
542 551 3.992260 TTCCCGCGAAAAAGAAATTGA 57.008 38.095 8.23 0.00 0.00 2.57
543 552 3.367630 CCATTCCCGCGAAAAAGAAATTG 59.632 43.478 8.23 0.00 0.00 2.32
544 553 3.006430 ACCATTCCCGCGAAAAAGAAATT 59.994 39.130 8.23 0.00 0.00 1.82
545 554 2.560981 ACCATTCCCGCGAAAAAGAAAT 59.439 40.909 8.23 0.00 0.00 2.17
546 555 1.957877 ACCATTCCCGCGAAAAAGAAA 59.042 42.857 8.23 0.00 0.00 2.52
547 556 1.611519 ACCATTCCCGCGAAAAAGAA 58.388 45.000 8.23 2.61 0.00 2.52
548 557 2.476126 TACCATTCCCGCGAAAAAGA 57.524 45.000 8.23 0.00 0.00 2.52
549 558 2.680841 TCATACCATTCCCGCGAAAAAG 59.319 45.455 8.23 0.00 0.00 2.27
550 559 2.712709 TCATACCATTCCCGCGAAAAA 58.287 42.857 8.23 0.00 0.00 1.94
551 560 2.404923 TCATACCATTCCCGCGAAAA 57.595 45.000 8.23 0.61 0.00 2.29
552 561 2.631160 ATCATACCATTCCCGCGAAA 57.369 45.000 8.23 1.06 0.00 3.46
553 562 3.973206 ATATCATACCATTCCCGCGAA 57.027 42.857 8.23 0.00 0.00 4.70
554 563 3.973206 AATATCATACCATTCCCGCGA 57.027 42.857 8.23 0.00 0.00 5.87
555 564 6.677781 AATTAATATCATACCATTCCCGCG 57.322 37.500 0.00 0.00 0.00 6.46
556 565 8.500753 TGTAATTAATATCATACCATTCCCGC 57.499 34.615 0.00 0.00 0.00 6.13
581 590 5.684704 ACGTTATCCCATGAAATCTGTCAT 58.315 37.500 0.00 0.00 38.84 3.06
582 591 5.097742 ACGTTATCCCATGAAATCTGTCA 57.902 39.130 0.00 0.00 0.00 3.58
583 592 5.584649 TCAACGTTATCCCATGAAATCTGTC 59.415 40.000 0.00 0.00 0.00 3.51
584 593 5.496556 TCAACGTTATCCCATGAAATCTGT 58.503 37.500 0.00 0.00 0.00 3.41
585 594 5.586243 ACTCAACGTTATCCCATGAAATCTG 59.414 40.000 0.00 0.00 0.00 2.90
586 595 5.745227 ACTCAACGTTATCCCATGAAATCT 58.255 37.500 0.00 0.00 0.00 2.40
587 596 5.584649 TGACTCAACGTTATCCCATGAAATC 59.415 40.000 0.00 0.00 0.00 2.17
588 597 5.496556 TGACTCAACGTTATCCCATGAAAT 58.503 37.500 0.00 0.00 0.00 2.17
589 598 4.900684 TGACTCAACGTTATCCCATGAAA 58.099 39.130 0.00 0.00 0.00 2.69
590 599 4.545208 TGACTCAACGTTATCCCATGAA 57.455 40.909 0.00 0.00 0.00 2.57
591 600 4.545208 TTGACTCAACGTTATCCCATGA 57.455 40.909 0.00 0.00 0.00 3.07
592 601 5.621197 TTTTGACTCAACGTTATCCCATG 57.379 39.130 0.00 0.00 0.00 3.66
593 602 5.710099 ACATTTTGACTCAACGTTATCCCAT 59.290 36.000 0.00 0.00 0.00 4.00
594 603 5.049060 CACATTTTGACTCAACGTTATCCCA 60.049 40.000 0.00 0.00 0.00 4.37
595 604 5.048991 ACACATTTTGACTCAACGTTATCCC 60.049 40.000 0.00 0.00 0.00 3.85
596 605 5.997385 ACACATTTTGACTCAACGTTATCC 58.003 37.500 0.00 0.00 0.00 2.59
597 606 7.908193 AAACACATTTTGACTCAACGTTATC 57.092 32.000 0.00 0.00 0.00 1.75
600 609 9.228636 GTTATAAACACATTTTGACTCAACGTT 57.771 29.630 0.00 0.00 0.00 3.99
601 610 8.399425 TGTTATAAACACATTTTGACTCAACGT 58.601 29.630 0.00 0.00 36.25 3.99
602 611 8.775220 TGTTATAAACACATTTTGACTCAACG 57.225 30.769 0.00 0.00 36.25 4.10
607 616 8.987890 GCCATTTGTTATAAACACATTTTGACT 58.012 29.630 0.00 0.00 41.97 3.41
608 617 8.768955 TGCCATTTGTTATAAACACATTTTGAC 58.231 29.630 0.00 0.00 41.97 3.18
609 618 8.893219 TGCCATTTGTTATAAACACATTTTGA 57.107 26.923 0.00 0.00 41.97 2.69
610 619 8.772705 ACTGCCATTTGTTATAAACACATTTTG 58.227 29.630 0.00 0.00 41.97 2.44
611 620 8.900983 ACTGCCATTTGTTATAAACACATTTT 57.099 26.923 0.00 0.00 41.97 1.82
612 621 9.638239 CTACTGCCATTTGTTATAAACACATTT 57.362 29.630 0.00 0.00 41.97 2.32
613 622 8.802267 ACTACTGCCATTTGTTATAAACACATT 58.198 29.630 0.00 0.00 41.97 2.71
614 623 8.243426 CACTACTGCCATTTGTTATAAACACAT 58.757 33.333 0.00 0.00 41.97 3.21
615 624 7.308891 CCACTACTGCCATTTGTTATAAACACA 60.309 37.037 0.00 0.00 41.97 3.72
616 625 7.027161 CCACTACTGCCATTTGTTATAAACAC 58.973 38.462 0.00 0.00 41.97 3.32
617 626 6.151985 CCCACTACTGCCATTTGTTATAAACA 59.848 38.462 0.00 0.00 40.21 2.83
618 627 6.152154 ACCCACTACTGCCATTTGTTATAAAC 59.848 38.462 0.00 0.00 0.00 2.01
619 628 6.249951 ACCCACTACTGCCATTTGTTATAAA 58.750 36.000 0.00 0.00 0.00 1.40
620 629 5.822204 ACCCACTACTGCCATTTGTTATAA 58.178 37.500 0.00 0.00 0.00 0.98
621 630 5.444744 ACCCACTACTGCCATTTGTTATA 57.555 39.130 0.00 0.00 0.00 0.98
622 631 4.316025 ACCCACTACTGCCATTTGTTAT 57.684 40.909 0.00 0.00 0.00 1.89
623 632 3.799432 ACCCACTACTGCCATTTGTTA 57.201 42.857 0.00 0.00 0.00 2.41
624 633 2.675658 ACCCACTACTGCCATTTGTT 57.324 45.000 0.00 0.00 0.00 2.83
625 634 3.799432 TTACCCACTACTGCCATTTGT 57.201 42.857 0.00 0.00 0.00 2.83
626 635 6.119536 TCTAATTACCCACTACTGCCATTTG 58.880 40.000 0.00 0.00 0.00 2.32
627 636 6.321821 TCTAATTACCCACTACTGCCATTT 57.678 37.500 0.00 0.00 0.00 2.32
628 637 5.687706 GCTCTAATTACCCACTACTGCCATT 60.688 44.000 0.00 0.00 0.00 3.16
629 638 4.202367 GCTCTAATTACCCACTACTGCCAT 60.202 45.833 0.00 0.00 0.00 4.40
630 639 3.134081 GCTCTAATTACCCACTACTGCCA 59.866 47.826 0.00 0.00 0.00 4.92
631 640 3.729966 GCTCTAATTACCCACTACTGCC 58.270 50.000 0.00 0.00 0.00 4.85
632 641 3.181478 ACGCTCTAATTACCCACTACTGC 60.181 47.826 0.00 0.00 0.00 4.40
633 642 4.650754 ACGCTCTAATTACCCACTACTG 57.349 45.455 0.00 0.00 0.00 2.74
634 643 6.567959 GTTAACGCTCTAATTACCCACTACT 58.432 40.000 0.00 0.00 0.00 2.57
635 644 5.456822 CGTTAACGCTCTAATTACCCACTAC 59.543 44.000 16.05 0.00 0.00 2.73
636 645 5.125417 ACGTTAACGCTCTAATTACCCACTA 59.875 40.000 27.07 0.00 44.43 2.74
637 646 4.082026 ACGTTAACGCTCTAATTACCCACT 60.082 41.667 27.07 0.00 44.43 4.00
638 647 4.032104 CACGTTAACGCTCTAATTACCCAC 59.968 45.833 27.07 0.00 44.43 4.61
639 648 4.175516 CACGTTAACGCTCTAATTACCCA 58.824 43.478 27.07 0.00 44.43 4.51
640 649 4.176271 ACACGTTAACGCTCTAATTACCC 58.824 43.478 27.07 0.00 44.43 3.69
641 650 5.768333 AACACGTTAACGCTCTAATTACC 57.232 39.130 27.07 0.00 44.43 2.85
642 651 6.011277 CCAAACACGTTAACGCTCTAATTAC 58.989 40.000 27.07 0.00 44.43 1.89
643 652 5.695816 ACCAAACACGTTAACGCTCTAATTA 59.304 36.000 27.07 0.00 44.43 1.40
644 653 4.512571 ACCAAACACGTTAACGCTCTAATT 59.487 37.500 27.07 11.24 44.43 1.40
645 654 4.060205 ACCAAACACGTTAACGCTCTAAT 58.940 39.130 27.07 4.23 44.43 1.73
646 655 3.245754 CACCAAACACGTTAACGCTCTAA 59.754 43.478 27.07 0.00 44.43 2.10
647 656 2.796031 CACCAAACACGTTAACGCTCTA 59.204 45.455 27.07 0.00 44.43 2.43
648 657 1.595794 CACCAAACACGTTAACGCTCT 59.404 47.619 27.07 9.08 44.43 4.09
649 658 1.918543 GCACCAAACACGTTAACGCTC 60.919 52.381 27.07 3.12 44.43 5.03
650 659 0.028374 GCACCAAACACGTTAACGCT 59.972 50.000 27.07 12.09 44.43 5.07
651 660 0.028374 AGCACCAAACACGTTAACGC 59.972 50.000 27.07 7.99 44.43 4.84
652 661 1.328069 TGAGCACCAAACACGTTAACG 59.672 47.619 25.68 25.68 46.33 3.18
653 662 3.103007 GTTGAGCACCAAACACGTTAAC 58.897 45.455 0.00 0.00 36.36 2.01
654 663 2.747989 TGTTGAGCACCAAACACGTTAA 59.252 40.909 0.00 0.00 36.36 2.01
655 664 2.357075 TGTTGAGCACCAAACACGTTA 58.643 42.857 0.00 0.00 36.36 3.18
656 665 1.169577 TGTTGAGCACCAAACACGTT 58.830 45.000 0.00 0.00 36.36 3.99
657 666 1.388547 ATGTTGAGCACCAAACACGT 58.611 45.000 0.00 0.00 36.36 4.49
658 667 2.118683 CAATGTTGAGCACCAAACACG 58.881 47.619 0.00 0.00 36.36 4.49
659 668 2.100584 TCCAATGTTGAGCACCAAACAC 59.899 45.455 0.00 0.00 36.36 3.32
660 669 2.361757 CTCCAATGTTGAGCACCAAACA 59.638 45.455 0.00 0.00 36.36 2.83
661 670 2.863704 GCTCCAATGTTGAGCACCAAAC 60.864 50.000 7.35 0.00 41.24 2.93
662 671 1.340889 GCTCCAATGTTGAGCACCAAA 59.659 47.619 7.35 0.00 41.24 3.28
663 672 0.961019 GCTCCAATGTTGAGCACCAA 59.039 50.000 7.35 0.00 41.24 3.67
664 673 1.236616 CGCTCCAATGTTGAGCACCA 61.237 55.000 12.22 0.00 41.64 4.17
665 674 0.955428 TCGCTCCAATGTTGAGCACC 60.955 55.000 12.22 0.00 41.64 5.01
666 675 1.089920 ATCGCTCCAATGTTGAGCAC 58.910 50.000 12.22 0.00 41.64 4.40
667 676 1.825090 AATCGCTCCAATGTTGAGCA 58.175 45.000 12.22 1.02 41.64 4.26
668 677 2.162208 TGAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
669 678 4.161333 GTTGAAATCGCTCCAATGTTGAG 58.839 43.478 0.00 0.00 0.00 3.02
670 679 3.057596 GGTTGAAATCGCTCCAATGTTGA 60.058 43.478 0.00 0.00 0.00 3.18
671 680 3.244976 GGTTGAAATCGCTCCAATGTTG 58.755 45.455 0.00 0.00 0.00 3.33
672 681 2.095263 CGGTTGAAATCGCTCCAATGTT 60.095 45.455 0.00 0.00 0.00 2.71
673 682 1.468520 CGGTTGAAATCGCTCCAATGT 59.531 47.619 0.00 0.00 0.00 2.71
674 683 2.178474 CGGTTGAAATCGCTCCAATG 57.822 50.000 0.00 0.00 0.00 2.82
682 691 7.812309 TCATATTATCTAGCGGTTGAAATCG 57.188 36.000 2.32 0.00 0.00 3.34
685 694 9.554395 TCAAATCATATTATCTAGCGGTTGAAA 57.446 29.630 2.32 0.25 0.00 2.69
686 695 8.988934 GTCAAATCATATTATCTAGCGGTTGAA 58.011 33.333 2.32 0.00 0.00 2.69
687 696 7.328493 CGTCAAATCATATTATCTAGCGGTTGA 59.672 37.037 0.39 0.39 0.00 3.18
688 697 7.411912 CCGTCAAATCATATTATCTAGCGGTTG 60.412 40.741 0.00 0.00 0.00 3.77
689 698 6.590292 CCGTCAAATCATATTATCTAGCGGTT 59.410 38.462 0.00 0.00 0.00 4.44
690 699 6.100004 CCGTCAAATCATATTATCTAGCGGT 58.900 40.000 0.00 0.00 0.00 5.68
691 700 6.100004 ACCGTCAAATCATATTATCTAGCGG 58.900 40.000 0.00 0.00 38.92 5.52
692 701 6.021390 CGACCGTCAAATCATATTATCTAGCG 60.021 42.308 0.00 0.00 0.00 4.26
693 702 6.807230 ACGACCGTCAAATCATATTATCTAGC 59.193 38.462 0.00 0.00 0.00 3.42
694 703 8.021396 TCACGACCGTCAAATCATATTATCTAG 58.979 37.037 0.00 0.00 0.00 2.43
695 704 7.878036 TCACGACCGTCAAATCATATTATCTA 58.122 34.615 0.00 0.00 0.00 1.98
696 705 6.745116 TCACGACCGTCAAATCATATTATCT 58.255 36.000 0.00 0.00 0.00 1.98
697 706 7.411912 CCATCACGACCGTCAAATCATATTATC 60.412 40.741 0.00 0.00 0.00 1.75
698 707 6.368791 CCATCACGACCGTCAAATCATATTAT 59.631 38.462 0.00 0.00 0.00 1.28
699 708 5.694458 CCATCACGACCGTCAAATCATATTA 59.306 40.000 0.00 0.00 0.00 0.98
700 709 4.511454 CCATCACGACCGTCAAATCATATT 59.489 41.667 0.00 0.00 0.00 1.28
701 710 4.058124 CCATCACGACCGTCAAATCATAT 58.942 43.478 0.00 0.00 0.00 1.78
702 711 3.118920 ACCATCACGACCGTCAAATCATA 60.119 43.478 0.00 0.00 0.00 2.15
703 712 2.279741 CCATCACGACCGTCAAATCAT 58.720 47.619 0.00 0.00 0.00 2.45
704 713 1.001520 ACCATCACGACCGTCAAATCA 59.998 47.619 0.00 0.00 0.00 2.57
705 714 1.722011 ACCATCACGACCGTCAAATC 58.278 50.000 0.00 0.00 0.00 2.17
706 715 2.178912 AACCATCACGACCGTCAAAT 57.821 45.000 0.00 0.00 0.00 2.32
707 716 1.600013 CAAACCATCACGACCGTCAAA 59.400 47.619 0.00 0.00 0.00 2.69
708 717 1.222300 CAAACCATCACGACCGTCAA 58.778 50.000 0.00 0.00 0.00 3.18
709 718 0.601576 CCAAACCATCACGACCGTCA 60.602 55.000 0.00 0.00 0.00 4.35
710 719 0.320073 TCCAAACCATCACGACCGTC 60.320 55.000 0.00 0.00 0.00 4.79
711 720 0.323629 ATCCAAACCATCACGACCGT 59.676 50.000 0.00 0.00 0.00 4.83
712 721 1.006832 GATCCAAACCATCACGACCG 58.993 55.000 0.00 0.00 0.00 4.79
713 722 2.009774 CAGATCCAAACCATCACGACC 58.990 52.381 0.00 0.00 0.00 4.79
714 723 2.673368 GACAGATCCAAACCATCACGAC 59.327 50.000 0.00 0.00 0.00 4.34
715 724 2.354704 GGACAGATCCAAACCATCACGA 60.355 50.000 0.00 0.00 45.47 4.35
716 725 2.009774 GGACAGATCCAAACCATCACG 58.990 52.381 0.00 0.00 45.47 4.35
768 777 9.869667 AGGCGATTACCACTATCTATCTATATT 57.130 33.333 0.00 0.00 0.00 1.28
769 778 9.509956 GAGGCGATTACCACTATCTATCTATAT 57.490 37.037 0.00 0.00 0.00 0.86
770 779 7.937942 GGAGGCGATTACCACTATCTATCTATA 59.062 40.741 0.00 0.00 0.00 1.31
771 780 6.773685 GGAGGCGATTACCACTATCTATCTAT 59.226 42.308 0.00 0.00 0.00 1.98
772 781 6.120905 GGAGGCGATTACCACTATCTATCTA 58.879 44.000 0.00 0.00 0.00 1.98
773 782 4.951094 GGAGGCGATTACCACTATCTATCT 59.049 45.833 0.00 0.00 0.00 1.98
774 783 4.705507 TGGAGGCGATTACCACTATCTATC 59.294 45.833 0.00 0.00 0.00 2.08
775 784 4.673968 TGGAGGCGATTACCACTATCTAT 58.326 43.478 0.00 0.00 0.00 1.98
776 785 4.108501 TGGAGGCGATTACCACTATCTA 57.891 45.455 0.00 0.00 0.00 1.98
777 786 2.958818 TGGAGGCGATTACCACTATCT 58.041 47.619 0.00 0.00 0.00 1.98
778 787 3.963428 ATGGAGGCGATTACCACTATC 57.037 47.619 0.00 0.00 36.49 2.08
779 788 5.818678 TTAATGGAGGCGATTACCACTAT 57.181 39.130 0.00 0.00 36.49 2.12
780 789 5.617528 TTTAATGGAGGCGATTACCACTA 57.382 39.130 0.00 0.00 36.49 2.74
781 790 4.497291 TTTAATGGAGGCGATTACCACT 57.503 40.909 0.00 0.00 36.49 4.00
782 791 5.108385 CATTTAATGGAGGCGATTACCAC 57.892 43.478 0.00 0.00 36.49 4.16
796 805 7.237679 TCCTAGTCCCTCTAATCCCATTTAATG 59.762 40.741 0.00 0.00 0.00 1.90
810 819 9.508721 AAGAAAATTAATACTCCTAGTCCCTCT 57.491 33.333 0.00 0.00 0.00 3.69
1225 1236 5.447010 GCACATCAGAACAGCATCTTAACTC 60.447 44.000 0.00 0.00 0.00 3.01
1257 1268 1.106944 AAGGTGCCCCTCAAAACACG 61.107 55.000 0.00 0.00 41.56 4.49
1339 1672 3.907221 TGTAAGAGGACGCCCTTATACT 58.093 45.455 12.72 0.00 44.53 2.12
1376 1709 8.467598 TCTACTATAAAATTCTGTGAGAACGCT 58.532 33.333 0.00 0.00 37.00 5.07
1651 1984 5.104374 CAGGTGTAAGCAAATAATGGCAAG 58.896 41.667 0.00 0.00 36.26 4.01
1742 2075 9.846248 GTCAAAAATCTTGCAGTCTTATACAAT 57.154 29.630 0.00 0.00 0.00 2.71
1770 2105 8.971073 CCATTAGGGAAGAACATGTCTAAAATT 58.029 33.333 0.00 0.00 40.01 1.82
2171 2507 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
2173 2509 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2190 3074 7.849322 ATAATAGTTTCTTCTCTCCCTCTCC 57.151 40.000 0.00 0.00 0.00 3.71
2254 3594 5.991606 GCTACAATGCAATATGGAGAGTACA 59.008 40.000 12.51 0.00 28.23 2.90
2996 4437 6.924612 GGCATATTATTCATGAATGCAACACA 59.075 34.615 27.59 6.00 43.67 3.72
3045 4487 7.665559 TCTGTGAAACTGATATACAAGGCTTTT 59.334 33.333 0.00 0.00 40.02 2.27
3050 4492 5.525378 GCCTCTGTGAAACTGATATACAAGG 59.475 44.000 0.00 0.00 44.01 3.61
3072 4514 4.714632 TCCCATAGCAACTTAACTATGCC 58.285 43.478 4.81 0.00 42.84 4.40
3128 4570 5.335661 CCACCAACAGGCATACTTAAAGTTC 60.336 44.000 0.00 0.00 0.00 3.01
3160 4602 5.717178 AGCTGAGACATTTAGTTCTACTCCA 59.283 40.000 0.00 0.00 0.00 3.86
3769 5217 2.158475 TCATCCTTCACAGGCCAAAACT 60.158 45.455 5.01 0.00 40.58 2.66
3812 5260 9.372369 GCAACAGTAGTATAGAAAAGTCTTGAT 57.628 33.333 0.00 0.00 35.12 2.57
3828 5276 4.634012 TCACCAATAAGGCAACAGTAGT 57.366 40.909 0.00 0.00 43.14 2.73
3925 5373 2.234908 AGGTGACACTAAGGCATGAGAC 59.765 50.000 5.39 0.00 37.77 3.36
4238 5686 7.011109 GGCAACACACGACTAGTTATAATTCAT 59.989 37.037 0.00 0.00 0.00 2.57
4326 5774 4.899457 TCTTTTGGTACCTGAAGACAGAGA 59.101 41.667 19.98 9.69 46.03 3.10
4327 5775 5.215252 TCTTTTGGTACCTGAAGACAGAG 57.785 43.478 19.98 8.03 46.03 3.35
4437 5887 5.616270 TGGTGTAATTGCTAGTTTCTGTCA 58.384 37.500 0.00 0.00 0.00 3.58
4488 5938 0.390860 ATCCTCGGCTGCATCTGTAC 59.609 55.000 0.50 0.00 0.00 2.90
4618 6068 9.758021 TCTATATCCGTATAATTAGAACCCACA 57.242 33.333 0.00 0.00 0.00 4.17
4650 6100 1.144691 TGGTCAGATTGAACACCCCA 58.855 50.000 0.00 0.00 39.52 4.96
4774 6224 2.413837 ACTATCCTGTGAAACACGCAC 58.586 47.619 0.00 0.00 45.67 5.34
4797 6247 0.834612 CCCCCGCCACAAATCTACTA 59.165 55.000 0.00 0.00 0.00 1.82
4809 6259 4.678743 AGAAAAGGTGCCCCCGCC 62.679 66.667 0.00 0.00 42.11 6.13
4828 6278 8.551682 AGAGCCATCAAAATAAAAATCCCATA 57.448 30.769 0.00 0.00 0.00 2.74
4856 6306 3.253432 GGGCAAAACTGAGGACTAAACAG 59.747 47.826 0.00 0.00 37.62 3.16
4907 6357 0.039074 GATGGACCACGCGATAGAGG 60.039 60.000 15.93 8.96 41.67 3.69
4939 6389 2.747446 CAGACAGTAAAACCCCCATTCG 59.253 50.000 0.00 0.00 0.00 3.34
4949 6399 4.931661 AGACTTCGACCAGACAGTAAAA 57.068 40.909 0.00 0.00 0.00 1.52
4954 6404 3.053455 GTCAAAGACTTCGACCAGACAG 58.947 50.000 0.00 0.00 0.00 3.51
4955 6405 2.693591 AGTCAAAGACTTCGACCAGACA 59.306 45.455 2.58 0.00 40.28 3.41
4964 6414 4.932200 CACCCAGTATCAGTCAAAGACTTC 59.068 45.833 0.00 0.00 41.37 3.01
4976 6426 2.236146 CCTACAAGTGCACCCAGTATCA 59.764 50.000 14.63 0.00 0.00 2.15
4978 6428 2.236395 GACCTACAAGTGCACCCAGTAT 59.764 50.000 14.63 0.22 0.00 2.12
4983 6433 0.389948 CTCGACCTACAAGTGCACCC 60.390 60.000 14.63 0.00 0.00 4.61
4986 6436 0.601558 GTCCTCGACCTACAAGTGCA 59.398 55.000 0.00 0.00 0.00 4.57
4992 6442 2.044650 CCCCGTCCTCGACCTACA 60.045 66.667 0.00 0.00 39.71 2.74
4999 6449 4.530857 GTCCATGCCCCGTCCTCG 62.531 72.222 0.00 0.00 0.00 4.63
5052 6502 1.790755 CGTCCAAACCATGAACTCGA 58.209 50.000 0.00 0.00 0.00 4.04
5054 6504 0.165944 CGCGTCCAAACCATGAACTC 59.834 55.000 0.00 0.00 0.00 3.01
5055 6505 1.852067 GCGCGTCCAAACCATGAACT 61.852 55.000 8.43 0.00 0.00 3.01
5056 6506 1.442017 GCGCGTCCAAACCATGAAC 60.442 57.895 8.43 0.00 0.00 3.18
5057 6507 2.950673 GCGCGTCCAAACCATGAA 59.049 55.556 8.43 0.00 0.00 2.57
5144 6668 3.060020 GCCTACCTACGAGTGCGCA 62.060 63.158 5.66 5.66 42.48 6.09
5146 6670 2.412112 GGCCTACCTACGAGTGCG 59.588 66.667 0.00 0.00 44.79 5.34
5176 6700 1.832883 AGCCACCATTTTATCACGCA 58.167 45.000 0.00 0.00 0.00 5.24
5210 6734 0.036875 CAAGTTCGAGCCCCCTTCTT 59.963 55.000 0.00 0.00 0.00 2.52
5211 6735 0.836400 TCAAGTTCGAGCCCCCTTCT 60.836 55.000 0.00 0.00 0.00 2.85
5212 6736 0.391793 CTCAAGTTCGAGCCCCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
5216 6740 1.079057 GGTCTCAAGTTCGAGCCCC 60.079 63.158 0.00 0.00 32.75 5.80
5219 6743 0.670854 GGGTGGTCTCAAGTTCGAGC 60.671 60.000 0.00 0.00 32.75 5.03
5222 6746 0.320771 CTGGGGTGGTCTCAAGTTCG 60.321 60.000 0.00 0.00 0.00 3.95
5286 6810 0.977395 CAAGTTCGAGTCCCCTTCCT 59.023 55.000 0.00 0.00 0.00 3.36
5298 6822 2.027625 GCGGGTGGTCTCAAGTTCG 61.028 63.158 0.00 0.00 0.00 3.95
5325 6849 1.195900 GGTCATTTGACGTTTGCGCTA 59.804 47.619 9.73 0.00 45.65 4.26
5333 6857 7.174253 ACATTTACACATTAGGTCATTTGACGT 59.826 33.333 10.39 10.39 45.65 4.34
5336 6860 8.402798 ACACATTTACACATTAGGTCATTTGA 57.597 30.769 0.00 0.00 0.00 2.69
5372 6896 9.178427 GTACTCCACTACATATACGAAATCAAC 57.822 37.037 0.00 0.00 0.00 3.18
5374 6898 8.347771 GTGTACTCCACTACATATACGAAATCA 58.652 37.037 0.00 0.00 41.11 2.57
5402 6926 2.519013 AGAAAACATTCAGACCCCAGC 58.481 47.619 0.00 0.00 0.00 4.85
5403 6927 3.305608 GCAAGAAAACATTCAGACCCCAG 60.306 47.826 0.00 0.00 0.00 4.45
5494 7019 6.872020 ACTCTTGATGAAAAATGAAATGGCAG 59.128 34.615 0.00 0.00 0.00 4.85
5554 7079 7.338800 ACAAGGCAATATTACTCTGAAATGG 57.661 36.000 0.00 0.00 0.00 3.16
5615 7140 8.999431 CACTCTTGTAGTTAAATTTAGGCAAGA 58.001 33.333 21.04 21.04 38.76 3.02
5674 7200 6.092748 CACCACCAACATTAGAGCATAAAAC 58.907 40.000 0.00 0.00 0.00 2.43
5707 7233 4.506288 GGAATTTCAACTTTGTTTGTCCCG 59.494 41.667 0.00 0.00 0.00 5.14
5709 7235 6.976636 TTGGAATTTCAACTTTGTTTGTCC 57.023 33.333 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.