Multiple sequence alignment - TraesCS6A01G202600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G202600 chr6A 100.000 2297 0 0 1 2297 338477752 338480048 0 4242
1 TraesCS6A01G202600 chrUn 97.416 1896 48 1 1 1896 45099059 45100953 0 3229
2 TraesCS6A01G202600 chrUn 97.554 1881 45 1 1 1880 261514799 261512919 0 3217
3 TraesCS6A01G202600 chrUn 97.023 1881 50 2 1 1880 186162049 186163924 0 3158
4 TraesCS6A01G202600 chr5B 97.416 1896 48 1 1 1896 130613168 130615062 0 3229
5 TraesCS6A01G202600 chr5B 97.500 1880 46 1 1 1880 130608144 130610022 0 3210
6 TraesCS6A01G202600 chr5B 97.079 1883 52 1 1 1880 130570492 130568610 0 3169
7 TraesCS6A01G202600 chr2D 97.557 1883 43 1 1 1880 644701527 644703409 0 3219
8 TraesCS6A01G202600 chr2D 95.923 417 16 1 1882 2297 17963828 17964244 0 675
9 TraesCS6A01G202600 chr3A 97.394 1880 49 0 1 1880 66032047 66030168 0 3201
10 TraesCS6A01G202600 chr7B 97.340 1880 50 0 1 1880 743035434 743033555 0 3195
11 TraesCS6A01G202600 chr7B 96.635 416 13 1 1883 2297 743110083 743110498 0 689
12 TraesCS6A01G202600 chr7B 96.154 416 14 2 1883 2297 743069664 743069250 0 678
13 TraesCS6A01G202600 chr7D 96.875 416 12 1 1883 2297 382010806 382011221 0 695
14 TraesCS6A01G202600 chr4D 96.635 416 13 1 1883 2297 123581938 123581523 0 689
15 TraesCS6A01G202600 chr7A 96.394 416 14 1 1883 2297 120922483 120922898 0 684
16 TraesCS6A01G202600 chr6B 96.394 416 14 1 1883 2297 525681524 525681109 0 684
17 TraesCS6A01G202600 chr5A 96.394 416 14 1 1883 2297 16619913 16620328 0 684
18 TraesCS6A01G202600 chr3D 96.394 416 14 1 1883 2297 202615304 202614889 0 684


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G202600 chr6A 338477752 338480048 2296 False 4242.0 4242 100.000 1 2297 1 chr6A.!!$F1 2296
1 TraesCS6A01G202600 chrUn 45099059 45100953 1894 False 3229.0 3229 97.416 1 1896 1 chrUn.!!$F1 1895
2 TraesCS6A01G202600 chrUn 261512919 261514799 1880 True 3217.0 3217 97.554 1 1880 1 chrUn.!!$R1 1879
3 TraesCS6A01G202600 chrUn 186162049 186163924 1875 False 3158.0 3158 97.023 1 1880 1 chrUn.!!$F2 1879
4 TraesCS6A01G202600 chr5B 130608144 130615062 6918 False 3219.5 3229 97.458 1 1896 2 chr5B.!!$F1 1895
5 TraesCS6A01G202600 chr5B 130568610 130570492 1882 True 3169.0 3169 97.079 1 1880 1 chr5B.!!$R1 1879
6 TraesCS6A01G202600 chr2D 644701527 644703409 1882 False 3219.0 3219 97.557 1 1880 1 chr2D.!!$F2 1879
7 TraesCS6A01G202600 chr3A 66030168 66032047 1879 True 3201.0 3201 97.394 1 1880 1 chr3A.!!$R1 1879
8 TraesCS6A01G202600 chr7B 743033555 743035434 1879 True 3195.0 3195 97.340 1 1880 1 chr7B.!!$R1 1879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 5867 0.81361 CTTGCACGTGTGGTTCTGGA 60.814 55.0 18.38 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 7202 0.031994 AAGGCGAAAACATGTGTGCC 59.968 50.0 18.18 18.18 42.76 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.980573 TGGCTTGGATTACTTAGTGTTGT 58.019 39.130 0.00 0.00 0.00 3.32
184 185 2.513666 CGCAAGGCCGGCTAATCA 60.514 61.111 28.56 0.00 0.00 2.57
256 257 3.247411 CCGAACGCTATTATGAATGTGCA 59.753 43.478 0.00 0.00 0.00 4.57
272 273 2.297880 TGTGCAACCGACACTACACTAT 59.702 45.455 0.00 0.00 38.86 2.12
402 406 5.358442 GCTCTTTCGCTCTATAGGGATATCA 59.642 44.000 2.98 0.00 43.51 2.15
495 5522 2.233271 CTCCCGCCAATTCTATTGCAT 58.767 47.619 0.00 0.00 0.00 3.96
497 5524 1.955778 CCCGCCAATTCTATTGCATCA 59.044 47.619 0.00 0.00 0.00 3.07
498 5525 2.559668 CCCGCCAATTCTATTGCATCAT 59.440 45.455 0.00 0.00 0.00 2.45
577 5604 4.348168 AGAAAGGGCGGTAGATGATAATGT 59.652 41.667 0.00 0.00 0.00 2.71
585 5612 5.611374 CGGTAGATGATAATGTGAAAGGGT 58.389 41.667 0.00 0.00 0.00 4.34
621 5648 7.766283 GCTTGATAGTAAAGCCAAAGAAAGAT 58.234 34.615 0.00 0.00 43.45 2.40
641 5668 3.517296 TGCCCCAAGACAAGATACAAA 57.483 42.857 0.00 0.00 0.00 2.83
785 5812 1.075542 CGCTAGTTCACGCAAATCCA 58.924 50.000 0.00 0.00 0.00 3.41
799 5826 5.240623 ACGCAAATCCAAAGAAGTTATCACA 59.759 36.000 0.00 0.00 0.00 3.58
840 5867 0.813610 CTTGCACGTGTGGTTCTGGA 60.814 55.000 18.38 0.00 0.00 3.86
845 5872 2.863346 CGTGTGGTTCTGGACGGGA 61.863 63.158 0.00 0.00 0.00 5.14
906 5933 1.269831 GGCGCACCTCTCCTAACTATG 60.270 57.143 10.83 0.00 0.00 2.23
1196 6223 7.135741 AGAAAGTCTGAATTTTCCACGGAAGT 61.136 38.462 4.47 0.00 35.31 3.01
1232 6259 9.851686 ATATTTGATCTTAGGTGCATTTCACTA 57.148 29.630 0.00 0.00 44.98 2.74
1358 6385 1.140852 CGATCCACTTTCCCCATAGCA 59.859 52.381 0.00 0.00 0.00 3.49
1380 6407 1.550327 AAGGCTGTGTCTCGATCTCA 58.450 50.000 0.00 0.00 0.00 3.27
1408 6435 4.379603 CGCGAAAGATAAGATACGGGAGAT 60.380 45.833 0.00 0.00 36.20 2.75
1414 6441 2.191981 AAGATACGGGAGATGGGGTT 57.808 50.000 0.00 0.00 0.00 4.11
1626 6653 0.757561 TCACACGTTCTCCAGGTCCA 60.758 55.000 0.00 0.00 0.00 4.02
1721 6748 2.775384 TGGACACCTACCACTTTTCACT 59.225 45.455 0.00 0.00 32.03 3.41
1862 6889 1.077429 GAATGAAGAAGGCCGCCCT 60.077 57.895 5.55 0.00 45.77 5.19
1866 6893 3.249189 AAGAAGGCCGCCCTGTCA 61.249 61.111 5.55 0.00 41.90 3.58
1880 6907 4.023193 CGCCCTGTCAAAAGAATTAACACT 60.023 41.667 0.00 0.00 0.00 3.55
1881 6908 5.507315 CGCCCTGTCAAAAGAATTAACACTT 60.507 40.000 0.00 0.00 0.00 3.16
1884 6911 7.661040 CCCTGTCAAAAGAATTAACACTTCAT 58.339 34.615 0.00 0.00 0.00 2.57
1896 6923 2.561569 ACACTTCATAATAGCCGCCAC 58.438 47.619 0.00 0.00 0.00 5.01
1897 6924 2.093181 ACACTTCATAATAGCCGCCACA 60.093 45.455 0.00 0.00 0.00 4.17
1898 6925 2.942376 CACTTCATAATAGCCGCCACAA 59.058 45.455 0.00 0.00 0.00 3.33
1899 6926 3.565482 CACTTCATAATAGCCGCCACAAT 59.435 43.478 0.00 0.00 0.00 2.71
1900 6927 4.754618 CACTTCATAATAGCCGCCACAATA 59.245 41.667 0.00 0.00 0.00 1.90
1901 6928 5.238432 CACTTCATAATAGCCGCCACAATAA 59.762 40.000 0.00 0.00 0.00 1.40
1902 6929 5.470098 ACTTCATAATAGCCGCCACAATAAG 59.530 40.000 0.00 0.00 0.00 1.73
1903 6930 5.222079 TCATAATAGCCGCCACAATAAGA 57.778 39.130 0.00 0.00 0.00 2.10
1904 6931 5.616270 TCATAATAGCCGCCACAATAAGAA 58.384 37.500 0.00 0.00 0.00 2.52
1905 6932 6.058833 TCATAATAGCCGCCACAATAAGAAA 58.941 36.000 0.00 0.00 0.00 2.52
1906 6933 4.900635 AATAGCCGCCACAATAAGAAAG 57.099 40.909 0.00 0.00 0.00 2.62
1907 6934 2.489938 AGCCGCCACAATAAGAAAGA 57.510 45.000 0.00 0.00 0.00 2.52
1908 6935 2.790433 AGCCGCCACAATAAGAAAGAA 58.210 42.857 0.00 0.00 0.00 2.52
1909 6936 2.749621 AGCCGCCACAATAAGAAAGAAG 59.250 45.455 0.00 0.00 0.00 2.85
1910 6937 2.732282 GCCGCCACAATAAGAAAGAAGC 60.732 50.000 0.00 0.00 0.00 3.86
1911 6938 2.487762 CCGCCACAATAAGAAAGAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
1912 6939 3.057596 CCGCCACAATAAGAAAGAAGCAA 60.058 43.478 0.00 0.00 0.00 3.91
1913 6940 4.161333 CGCCACAATAAGAAAGAAGCAAG 58.839 43.478 0.00 0.00 0.00 4.01
1914 6941 3.922850 GCCACAATAAGAAAGAAGCAAGC 59.077 43.478 0.00 0.00 0.00 4.01
1915 6942 4.161333 CCACAATAAGAAAGAAGCAAGCG 58.839 43.478 0.00 0.00 0.00 4.68
1916 6943 4.083324 CCACAATAAGAAAGAAGCAAGCGA 60.083 41.667 0.00 0.00 0.00 4.93
1917 6944 5.451908 CACAATAAGAAAGAAGCAAGCGAA 58.548 37.500 0.00 0.00 0.00 4.70
1918 6945 5.914635 CACAATAAGAAAGAAGCAAGCGAAA 59.085 36.000 0.00 0.00 0.00 3.46
1919 6946 6.583806 CACAATAAGAAAGAAGCAAGCGAAAT 59.416 34.615 0.00 0.00 0.00 2.17
1920 6947 7.750458 CACAATAAGAAAGAAGCAAGCGAAATA 59.250 33.333 0.00 0.00 0.00 1.40
1921 6948 7.965107 ACAATAAGAAAGAAGCAAGCGAAATAG 59.035 33.333 0.00 0.00 0.00 1.73
1922 6949 4.348198 AGAAAGAAGCAAGCGAAATAGC 57.652 40.909 0.00 0.00 37.41 2.97
1956 6983 3.747976 GCCGCGCCCAACAATTCT 61.748 61.111 0.00 0.00 0.00 2.40
1957 6984 2.961768 CCGCGCCCAACAATTCTT 59.038 55.556 0.00 0.00 0.00 2.52
1958 6985 1.928706 GCCGCGCCCAACAATTCTTA 61.929 55.000 0.00 0.00 0.00 2.10
1959 6986 0.738389 CCGCGCCCAACAATTCTTAT 59.262 50.000 0.00 0.00 0.00 1.73
1960 6987 1.134175 CCGCGCCCAACAATTCTTATT 59.866 47.619 0.00 0.00 0.00 1.40
1961 6988 2.450160 CGCGCCCAACAATTCTTATTC 58.550 47.619 0.00 0.00 0.00 1.75
1962 6989 2.159448 CGCGCCCAACAATTCTTATTCA 60.159 45.455 0.00 0.00 0.00 2.57
1963 6990 3.179048 GCGCCCAACAATTCTTATTCAC 58.821 45.455 0.00 0.00 0.00 3.18
1964 6991 3.425404 CGCCCAACAATTCTTATTCACG 58.575 45.455 0.00 0.00 0.00 4.35
1965 6992 3.730662 CGCCCAACAATTCTTATTCACGG 60.731 47.826 0.00 0.00 0.00 4.94
1966 6993 3.428862 GCCCAACAATTCTTATTCACGGG 60.429 47.826 0.00 0.00 0.00 5.28
1967 6994 4.013728 CCCAACAATTCTTATTCACGGGA 58.986 43.478 0.00 0.00 29.47 5.14
1968 6995 4.461081 CCCAACAATTCTTATTCACGGGAA 59.539 41.667 0.72 0.72 37.45 3.97
1969 6996 5.047660 CCCAACAATTCTTATTCACGGGAAA 60.048 40.000 3.14 0.00 36.43 3.13
1970 6997 6.092748 CCAACAATTCTTATTCACGGGAAAG 58.907 40.000 3.14 0.00 36.43 2.62
1971 6998 5.310720 ACAATTCTTATTCACGGGAAAGC 57.689 39.130 3.14 0.00 36.43 3.51
1972 6999 4.157840 ACAATTCTTATTCACGGGAAAGCC 59.842 41.667 3.14 0.00 36.43 4.35
1973 7000 3.426787 TTCTTATTCACGGGAAAGCCA 57.573 42.857 3.14 0.00 36.43 4.75
1974 7001 3.426787 TCTTATTCACGGGAAAGCCAA 57.573 42.857 3.14 0.00 36.43 4.52
1975 7002 3.078837 TCTTATTCACGGGAAAGCCAAC 58.921 45.455 3.14 0.00 36.43 3.77
1976 7003 1.828979 TATTCACGGGAAAGCCAACC 58.171 50.000 3.14 0.00 36.43 3.77
1982 7009 3.030415 GGGAAAGCCAACCGAAAGA 57.970 52.632 0.00 0.00 35.15 2.52
1983 7010 1.545841 GGGAAAGCCAACCGAAAGAT 58.454 50.000 0.00 0.00 35.15 2.40
1984 7011 1.893137 GGGAAAGCCAACCGAAAGATT 59.107 47.619 0.00 0.00 35.15 2.40
1985 7012 2.094700 GGGAAAGCCAACCGAAAGATTC 60.095 50.000 0.00 0.00 35.15 2.52
1986 7013 5.508645 GGGAAAGCCAACCGAAAGATTCG 62.509 52.174 5.56 5.56 43.95 3.34
2001 7028 7.144007 GAAAGATTCGATTCAGACTTCGTAG 57.856 40.000 9.78 0.00 36.74 3.51
2002 7029 6.438259 AAGATTCGATTCAGACTTCGTAGA 57.562 37.500 9.78 0.00 36.74 2.59
2003 7030 6.055231 AGATTCGATTCAGACTTCGTAGAG 57.945 41.667 9.78 0.00 38.43 2.43
2004 7031 3.677190 TCGATTCAGACTTCGTAGAGC 57.323 47.619 0.00 0.00 38.43 4.09
2005 7032 2.355132 TCGATTCAGACTTCGTAGAGCC 59.645 50.000 0.00 0.00 38.43 4.70
2006 7033 2.722071 GATTCAGACTTCGTAGAGCCG 58.278 52.381 0.00 0.00 38.43 5.52
2007 7034 0.809385 TTCAGACTTCGTAGAGCCGG 59.191 55.000 0.00 0.00 38.43 6.13
2008 7035 0.322277 TCAGACTTCGTAGAGCCGGT 60.322 55.000 1.90 0.00 38.43 5.28
2009 7036 0.179161 CAGACTTCGTAGAGCCGGTG 60.179 60.000 1.90 0.00 38.43 4.94
2010 7037 1.516603 GACTTCGTAGAGCCGGTGC 60.517 63.158 1.90 0.00 38.43 5.01
2020 7047 3.275338 GCCGGTGCTGCTGCTATC 61.275 66.667 17.00 7.20 40.48 2.08
2021 7048 2.503061 CCGGTGCTGCTGCTATCT 59.497 61.111 17.00 0.00 40.48 1.98
2022 7049 1.742146 CCGGTGCTGCTGCTATCTA 59.258 57.895 17.00 0.00 40.48 1.98
2023 7050 0.598680 CCGGTGCTGCTGCTATCTAC 60.599 60.000 17.00 5.83 40.48 2.59
2024 7051 0.103026 CGGTGCTGCTGCTATCTACA 59.897 55.000 17.00 0.00 40.48 2.74
2025 7052 1.269988 CGGTGCTGCTGCTATCTACAT 60.270 52.381 17.00 0.00 40.48 2.29
2026 7053 2.029918 CGGTGCTGCTGCTATCTACATA 60.030 50.000 17.00 0.00 40.48 2.29
2027 7054 3.583806 GGTGCTGCTGCTATCTACATAG 58.416 50.000 17.00 0.00 40.48 2.23
2028 7055 3.583806 GTGCTGCTGCTATCTACATAGG 58.416 50.000 17.00 0.00 40.48 2.57
2029 7056 2.564504 TGCTGCTGCTATCTACATAGGG 59.435 50.000 17.00 0.00 40.48 3.53
2030 7057 2.676463 GCTGCTGCTATCTACATAGGGC 60.676 54.545 8.53 0.00 33.61 5.19
2031 7058 1.902508 TGCTGCTATCTACATAGGGCC 59.097 52.381 0.00 0.00 33.61 5.80
2032 7059 2.183679 GCTGCTATCTACATAGGGCCT 58.816 52.381 12.58 12.58 33.61 5.19
2033 7060 2.569404 GCTGCTATCTACATAGGGCCTT 59.431 50.000 13.45 0.00 33.61 4.35
2034 7061 3.368948 GCTGCTATCTACATAGGGCCTTC 60.369 52.174 13.45 0.00 33.61 3.46
2035 7062 3.173965 TGCTATCTACATAGGGCCTTCC 58.826 50.000 13.45 0.00 33.61 3.46
2047 7074 3.400054 CCTTCCCCCACTCCCGTC 61.400 72.222 0.00 0.00 0.00 4.79
2048 7075 3.400054 CTTCCCCCACTCCCGTCC 61.400 72.222 0.00 0.00 0.00 4.79
2060 7087 4.157120 CCGTCCCGGGGTGCTAAG 62.157 72.222 23.50 2.35 44.15 2.18
2061 7088 4.157120 CGTCCCGGGGTGCTAAGG 62.157 72.222 23.50 1.04 0.00 2.69
2062 7089 3.793888 GTCCCGGGGTGCTAAGGG 61.794 72.222 23.50 0.00 45.10 3.95
2065 7092 3.335729 CCGGGGTGCTAAGGGGTT 61.336 66.667 0.00 0.00 0.00 4.11
2066 7093 2.761160 CGGGGTGCTAAGGGGTTT 59.239 61.111 0.00 0.00 0.00 3.27
2067 7094 1.076014 CGGGGTGCTAAGGGGTTTT 59.924 57.895 0.00 0.00 0.00 2.43
2068 7095 1.248101 CGGGGTGCTAAGGGGTTTTG 61.248 60.000 0.00 0.00 0.00 2.44
2069 7096 0.178944 GGGGTGCTAAGGGGTTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
2070 7097 1.712056 GGGTGCTAAGGGGTTTTGTT 58.288 50.000 0.00 0.00 0.00 2.83
2071 7098 2.043992 GGGTGCTAAGGGGTTTTGTTT 58.956 47.619 0.00 0.00 0.00 2.83
2072 7099 2.436542 GGGTGCTAAGGGGTTTTGTTTT 59.563 45.455 0.00 0.00 0.00 2.43
2073 7100 3.642377 GGGTGCTAAGGGGTTTTGTTTTA 59.358 43.478 0.00 0.00 0.00 1.52
2074 7101 4.262292 GGGTGCTAAGGGGTTTTGTTTTAG 60.262 45.833 0.00 0.00 0.00 1.85
2075 7102 4.262292 GGTGCTAAGGGGTTTTGTTTTAGG 60.262 45.833 0.00 0.00 0.00 2.69
2076 7103 4.585581 GTGCTAAGGGGTTTTGTTTTAGGA 59.414 41.667 0.00 0.00 0.00 2.94
2077 7104 5.069383 GTGCTAAGGGGTTTTGTTTTAGGAA 59.931 40.000 0.00 0.00 0.00 3.36
2078 7105 5.069383 TGCTAAGGGGTTTTGTTTTAGGAAC 59.931 40.000 0.00 0.00 0.00 3.62
2079 7106 5.069383 GCTAAGGGGTTTTGTTTTAGGAACA 59.931 40.000 0.00 0.00 0.00 3.18
2080 7107 6.407187 GCTAAGGGGTTTTGTTTTAGGAACAA 60.407 38.462 0.55 0.55 38.26 2.83
2081 7108 5.347620 AGGGGTTTTGTTTTAGGAACAAC 57.652 39.130 4.01 0.00 39.57 3.32
2082 7109 4.114073 GGGGTTTTGTTTTAGGAACAACG 58.886 43.478 4.01 0.00 39.57 4.10
2083 7110 4.114073 GGGTTTTGTTTTAGGAACAACGG 58.886 43.478 4.01 0.00 39.57 4.44
2084 7111 3.552699 GGTTTTGTTTTAGGAACAACGGC 59.447 43.478 4.01 0.00 39.57 5.68
2085 7112 2.759538 TTGTTTTAGGAACAACGGCG 57.240 45.000 4.80 4.80 35.45 6.46
2086 7113 0.945813 TGTTTTAGGAACAACGGCGG 59.054 50.000 13.24 0.00 0.00 6.13
2087 7114 0.946528 GTTTTAGGAACAACGGCGGT 59.053 50.000 13.24 0.00 0.00 5.68
2088 7115 0.945813 TTTTAGGAACAACGGCGGTG 59.054 50.000 25.44 25.44 0.00 4.94
2089 7116 0.179051 TTTAGGAACAACGGCGGTGT 60.179 50.000 27.16 27.16 0.00 4.16
2090 7117 0.179051 TTAGGAACAACGGCGGTGTT 60.179 50.000 40.00 40.00 0.00 3.32
2091 7118 0.179051 TAGGAACAACGGCGGTGTTT 60.179 50.000 39.50 28.42 0.00 2.83
2092 7119 1.033202 AGGAACAACGGCGGTGTTTT 61.033 50.000 39.50 28.45 0.00 2.43
2093 7120 0.868177 GGAACAACGGCGGTGTTTTG 60.868 55.000 39.50 22.89 0.00 2.44
2094 7121 1.476235 GAACAACGGCGGTGTTTTGC 61.476 55.000 39.50 25.42 0.00 3.68
2095 7122 1.939769 AACAACGGCGGTGTTTTGCT 61.940 50.000 35.29 15.72 0.00 3.91
2096 7123 1.943693 CAACGGCGGTGTTTTGCTG 60.944 57.895 18.46 0.00 43.17 4.41
2097 7124 2.115911 AACGGCGGTGTTTTGCTGA 61.116 52.632 13.24 0.00 39.91 4.26
2098 7125 2.051345 CGGCGGTGTTTTGCTGAC 60.051 61.111 0.00 0.00 39.91 3.51
2099 7126 2.051345 GGCGGTGTTTTGCTGACG 60.051 61.111 0.00 0.00 0.00 4.35
2100 7127 2.725815 GCGGTGTTTTGCTGACGC 60.726 61.111 0.00 0.00 40.19 5.19
2101 7128 2.051345 CGGTGTTTTGCTGACGCC 60.051 61.111 7.06 7.06 42.78 5.68
2102 7129 2.542907 CGGTGTTTTGCTGACGCCT 61.543 57.895 12.93 0.00 43.76 5.52
2103 7130 1.282875 GGTGTTTTGCTGACGCCTC 59.717 57.895 9.16 0.00 42.88 4.70
2104 7131 1.082756 GTGTTTTGCTGACGCCTCG 60.083 57.895 0.00 0.00 34.43 4.63
2105 7132 1.227409 TGTTTTGCTGACGCCTCGA 60.227 52.632 0.00 0.00 34.43 4.04
2106 7133 0.812014 TGTTTTGCTGACGCCTCGAA 60.812 50.000 0.00 0.00 34.43 3.71
2107 7134 0.517316 GTTTTGCTGACGCCTCGAAT 59.483 50.000 0.00 0.00 34.43 3.34
2108 7135 0.796312 TTTTGCTGACGCCTCGAATC 59.204 50.000 0.00 0.00 34.43 2.52
2109 7136 0.320334 TTTGCTGACGCCTCGAATCA 60.320 50.000 0.00 0.00 34.43 2.57
2110 7137 0.320334 TTGCTGACGCCTCGAATCAA 60.320 50.000 0.00 0.00 34.43 2.57
2111 7138 1.014044 TGCTGACGCCTCGAATCAAC 61.014 55.000 0.00 0.00 34.43 3.18
2112 7139 1.991430 CTGACGCCTCGAATCAACG 59.009 57.895 0.00 0.00 0.00 4.10
2113 7140 2.014093 CTGACGCCTCGAATCAACGC 62.014 60.000 0.00 0.00 0.00 4.84
2114 7141 1.805945 GACGCCTCGAATCAACGCT 60.806 57.895 0.00 0.00 0.00 5.07
2115 7142 1.352156 GACGCCTCGAATCAACGCTT 61.352 55.000 0.00 0.00 0.00 4.68
2116 7143 0.949105 ACGCCTCGAATCAACGCTTT 60.949 50.000 0.00 0.00 0.00 3.51
2117 7144 0.165944 CGCCTCGAATCAACGCTTTT 59.834 50.000 0.00 0.00 0.00 2.27
2118 7145 1.606606 GCCTCGAATCAACGCTTTTG 58.393 50.000 0.00 0.00 0.00 2.44
2119 7146 1.069227 GCCTCGAATCAACGCTTTTGT 60.069 47.619 0.00 0.00 0.00 2.83
2120 7147 2.604614 GCCTCGAATCAACGCTTTTGTT 60.605 45.455 0.00 0.00 0.00 2.83
2128 7155 3.821937 CAACGCTTTTGTTGTGACATG 57.178 42.857 0.00 0.00 43.28 3.21
2129 7156 1.838913 ACGCTTTTGTTGTGACATGC 58.161 45.000 0.00 0.00 35.29 4.06
2130 7157 1.405105 ACGCTTTTGTTGTGACATGCT 59.595 42.857 0.00 0.00 35.29 3.79
2131 7158 2.616376 ACGCTTTTGTTGTGACATGCTA 59.384 40.909 0.00 0.00 35.29 3.49
2132 7159 3.066064 ACGCTTTTGTTGTGACATGCTAA 59.934 39.130 0.00 0.00 35.29 3.09
2133 7160 3.665409 CGCTTTTGTTGTGACATGCTAAG 59.335 43.478 0.00 0.00 35.29 2.18
2134 7161 4.610945 GCTTTTGTTGTGACATGCTAAGT 58.389 39.130 0.00 0.00 35.29 2.24
2135 7162 5.043248 GCTTTTGTTGTGACATGCTAAGTT 58.957 37.500 0.00 0.00 35.29 2.66
2136 7163 5.519927 GCTTTTGTTGTGACATGCTAAGTTT 59.480 36.000 0.00 0.00 35.29 2.66
2137 7164 6.035975 GCTTTTGTTGTGACATGCTAAGTTTT 59.964 34.615 0.00 0.00 35.29 2.43
2138 7165 7.518731 TTTTGTTGTGACATGCTAAGTTTTC 57.481 32.000 0.00 0.00 35.29 2.29
2139 7166 6.449635 TTGTTGTGACATGCTAAGTTTTCT 57.550 33.333 0.00 0.00 35.29 2.52
2140 7167 6.060028 TGTTGTGACATGCTAAGTTTTCTC 57.940 37.500 0.00 0.00 0.00 2.87
2141 7168 5.008613 TGTTGTGACATGCTAAGTTTTCTCC 59.991 40.000 0.00 0.00 0.00 3.71
2142 7169 4.072131 TGTGACATGCTAAGTTTTCTCCC 58.928 43.478 0.00 0.00 0.00 4.30
2143 7170 3.440522 GTGACATGCTAAGTTTTCTCCCC 59.559 47.826 0.00 0.00 0.00 4.81
2144 7171 3.330701 TGACATGCTAAGTTTTCTCCCCT 59.669 43.478 0.00 0.00 0.00 4.79
2145 7172 4.534500 TGACATGCTAAGTTTTCTCCCCTA 59.466 41.667 0.00 0.00 0.00 3.53
2146 7173 5.191722 TGACATGCTAAGTTTTCTCCCCTAT 59.808 40.000 0.00 0.00 0.00 2.57
2147 7174 6.079712 ACATGCTAAGTTTTCTCCCCTATT 57.920 37.500 0.00 0.00 0.00 1.73
2148 7175 5.888161 ACATGCTAAGTTTTCTCCCCTATTG 59.112 40.000 0.00 0.00 0.00 1.90
2149 7176 4.270008 TGCTAAGTTTTCTCCCCTATTGC 58.730 43.478 0.00 0.00 0.00 3.56
2150 7177 4.018415 TGCTAAGTTTTCTCCCCTATTGCT 60.018 41.667 0.00 0.00 0.00 3.91
2151 7178 5.190925 TGCTAAGTTTTCTCCCCTATTGCTA 59.809 40.000 0.00 0.00 0.00 3.49
2152 7179 5.760743 GCTAAGTTTTCTCCCCTATTGCTAG 59.239 44.000 0.00 0.00 0.00 3.42
2153 7180 5.780958 AAGTTTTCTCCCCTATTGCTAGT 57.219 39.130 0.00 0.00 0.00 2.57
2154 7181 6.886178 AAGTTTTCTCCCCTATTGCTAGTA 57.114 37.500 0.00 0.00 0.00 1.82
2155 7182 6.487299 AGTTTTCTCCCCTATTGCTAGTAG 57.513 41.667 0.00 0.00 0.00 2.57
2156 7183 5.367060 AGTTTTCTCCCCTATTGCTAGTAGG 59.633 44.000 0.00 0.00 38.75 3.18
2157 7184 4.554553 TTCTCCCCTATTGCTAGTAGGT 57.445 45.455 0.00 0.00 37.58 3.08
2158 7185 4.554553 TCTCCCCTATTGCTAGTAGGTT 57.445 45.455 0.00 0.00 37.58 3.50
2159 7186 4.223953 TCTCCCCTATTGCTAGTAGGTTG 58.776 47.826 0.00 0.00 37.58 3.77
2160 7187 4.078805 TCTCCCCTATTGCTAGTAGGTTGA 60.079 45.833 0.00 1.22 37.58 3.18
2161 7188 4.827789 TCCCCTATTGCTAGTAGGTTGAT 58.172 43.478 0.00 0.00 37.58 2.57
2162 7189 4.593206 TCCCCTATTGCTAGTAGGTTGATG 59.407 45.833 0.00 0.00 37.58 3.07
2163 7190 4.263068 CCCCTATTGCTAGTAGGTTGATGG 60.263 50.000 0.00 0.00 37.58 3.51
2164 7191 4.263068 CCCTATTGCTAGTAGGTTGATGGG 60.263 50.000 0.00 0.00 37.58 4.00
2165 7192 4.348168 CCTATTGCTAGTAGGTTGATGGGT 59.652 45.833 0.00 0.00 35.12 4.51
2166 7193 3.906720 TTGCTAGTAGGTTGATGGGTC 57.093 47.619 0.00 0.00 0.00 4.46
2167 7194 1.754803 TGCTAGTAGGTTGATGGGTCG 59.245 52.381 0.00 0.00 0.00 4.79
2168 7195 1.538419 GCTAGTAGGTTGATGGGTCGC 60.538 57.143 0.00 0.00 0.00 5.19
2169 7196 1.754803 CTAGTAGGTTGATGGGTCGCA 59.245 52.381 0.00 0.00 0.00 5.10
2170 7197 0.249398 AGTAGGTTGATGGGTCGCAC 59.751 55.000 0.00 0.00 0.00 5.34
2171 7198 0.036765 GTAGGTTGATGGGTCGCACA 60.037 55.000 0.00 0.00 0.00 4.57
2172 7199 0.036765 TAGGTTGATGGGTCGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2173 7200 2.332654 GGTTGATGGGTCGCACACC 61.333 63.158 0.00 0.00 45.97 4.16
2184 7211 4.041917 GCACACCCGGCACACATG 62.042 66.667 0.00 0.00 0.00 3.21
2185 7212 2.594303 CACACCCGGCACACATGT 60.594 61.111 0.00 0.00 0.00 3.21
2186 7213 2.192861 CACACCCGGCACACATGTT 61.193 57.895 0.00 0.00 0.00 2.71
2187 7214 1.454847 ACACCCGGCACACATGTTT 60.455 52.632 0.00 0.00 0.00 2.83
2188 7215 1.040339 ACACCCGGCACACATGTTTT 61.040 50.000 0.00 0.00 0.00 2.43
2189 7216 0.318614 CACCCGGCACACATGTTTTC 60.319 55.000 0.00 0.00 0.00 2.29
2190 7217 1.081509 CCCGGCACACATGTTTTCG 60.082 57.895 0.00 0.00 0.00 3.46
2191 7218 1.729131 CCGGCACACATGTTTTCGC 60.729 57.895 0.00 0.00 0.00 4.70
2192 7219 1.729131 CGGCACACATGTTTTCGCC 60.729 57.895 12.46 12.46 36.16 5.54
2193 7220 1.659794 GGCACACATGTTTTCGCCT 59.340 52.632 14.40 0.00 36.58 5.52
2194 7221 0.031994 GGCACACATGTTTTCGCCTT 59.968 50.000 14.40 0.00 36.58 4.35
2195 7222 1.130955 GCACACATGTTTTCGCCTTG 58.869 50.000 0.00 0.00 0.00 3.61
2196 7223 1.130955 CACACATGTTTTCGCCTTGC 58.869 50.000 0.00 0.00 0.00 4.01
2197 7224 1.032014 ACACATGTTTTCGCCTTGCT 58.968 45.000 0.00 0.00 0.00 3.91
2198 7225 1.408702 ACACATGTTTTCGCCTTGCTT 59.591 42.857 0.00 0.00 0.00 3.91
2199 7226 1.788308 CACATGTTTTCGCCTTGCTTG 59.212 47.619 0.00 0.00 0.00 4.01
2200 7227 1.408702 ACATGTTTTCGCCTTGCTTGT 59.591 42.857 0.00 0.00 0.00 3.16
2201 7228 1.788308 CATGTTTTCGCCTTGCTTGTG 59.212 47.619 0.00 0.00 0.00 3.33
2202 7229 0.814457 TGTTTTCGCCTTGCTTGTGT 59.186 45.000 0.00 0.00 0.00 3.72
2203 7230 1.199624 GTTTTCGCCTTGCTTGTGTG 58.800 50.000 0.00 0.00 0.00 3.82
2204 7231 0.814457 TTTTCGCCTTGCTTGTGTGT 59.186 45.000 0.00 0.00 0.00 3.72
2205 7232 0.380378 TTTCGCCTTGCTTGTGTGTC 59.620 50.000 0.00 0.00 0.00 3.67
2206 7233 1.444119 TTCGCCTTGCTTGTGTGTCC 61.444 55.000 0.00 0.00 0.00 4.02
2207 7234 2.186160 CGCCTTGCTTGTGTGTCCA 61.186 57.895 0.00 0.00 0.00 4.02
2208 7235 1.518056 CGCCTTGCTTGTGTGTCCAT 61.518 55.000 0.00 0.00 0.00 3.41
2209 7236 1.533625 GCCTTGCTTGTGTGTCCATA 58.466 50.000 0.00 0.00 0.00 2.74
2210 7237 1.885887 GCCTTGCTTGTGTGTCCATAA 59.114 47.619 0.00 0.00 0.00 1.90
2211 7238 2.351738 GCCTTGCTTGTGTGTCCATAAC 60.352 50.000 0.00 0.00 0.00 1.89
2212 7239 3.149196 CCTTGCTTGTGTGTCCATAACT 58.851 45.455 0.00 0.00 0.00 2.24
2213 7240 3.189287 CCTTGCTTGTGTGTCCATAACTC 59.811 47.826 0.00 0.00 0.00 3.01
2214 7241 3.483808 TGCTTGTGTGTCCATAACTCA 57.516 42.857 0.00 0.00 0.00 3.41
2215 7242 3.814625 TGCTTGTGTGTCCATAACTCAA 58.185 40.909 0.00 0.00 33.43 3.02
2216 7243 4.203226 TGCTTGTGTGTCCATAACTCAAA 58.797 39.130 0.00 0.00 33.43 2.69
2217 7244 4.642437 TGCTTGTGTGTCCATAACTCAAAA 59.358 37.500 0.00 0.00 33.43 2.44
2218 7245 5.301551 TGCTTGTGTGTCCATAACTCAAAAT 59.698 36.000 0.00 0.00 33.43 1.82
2219 7246 6.488344 TGCTTGTGTGTCCATAACTCAAAATA 59.512 34.615 0.00 0.00 33.43 1.40
2220 7247 7.013750 TGCTTGTGTGTCCATAACTCAAAATAA 59.986 33.333 0.00 0.00 33.43 1.40
2221 7248 7.538678 GCTTGTGTGTCCATAACTCAAAATAAG 59.461 37.037 0.00 0.00 33.43 1.73
2222 7249 8.458573 TTGTGTGTCCATAACTCAAAATAAGT 57.541 30.769 0.00 0.00 33.43 2.24
2223 7250 7.870826 TGTGTGTCCATAACTCAAAATAAGTG 58.129 34.615 0.00 0.00 33.43 3.16
2224 7251 7.717436 TGTGTGTCCATAACTCAAAATAAGTGA 59.283 33.333 0.00 0.00 33.43 3.41
2225 7252 8.015658 GTGTGTCCATAACTCAAAATAAGTGAC 58.984 37.037 0.00 0.00 33.43 3.67
2226 7253 7.174253 TGTGTCCATAACTCAAAATAAGTGACC 59.826 37.037 0.00 0.00 0.00 4.02
2227 7254 7.390718 GTGTCCATAACTCAAAATAAGTGACCT 59.609 37.037 0.00 0.00 0.00 3.85
2228 7255 8.598916 TGTCCATAACTCAAAATAAGTGACCTA 58.401 33.333 0.00 0.00 0.00 3.08
2229 7256 9.444600 GTCCATAACTCAAAATAAGTGACCTAA 57.555 33.333 0.00 0.00 0.00 2.69
2230 7257 9.444600 TCCATAACTCAAAATAAGTGACCTAAC 57.555 33.333 0.00 0.00 0.00 2.34
2231 7258 8.388103 CCATAACTCAAAATAAGTGACCTAACG 58.612 37.037 0.00 0.00 0.00 3.18
2232 7259 6.796705 AACTCAAAATAAGTGACCTAACGG 57.203 37.500 0.00 0.00 0.00 4.44
2233 7260 4.694037 ACTCAAAATAAGTGACCTAACGGC 59.306 41.667 0.00 0.00 0.00 5.68
2234 7261 4.004982 TCAAAATAAGTGACCTAACGGCC 58.995 43.478 0.00 0.00 0.00 6.13
2235 7262 2.304751 AATAAGTGACCTAACGGCCG 57.695 50.000 26.86 26.86 0.00 6.13
2236 7263 0.179092 ATAAGTGACCTAACGGCCGC 60.179 55.000 28.58 8.37 0.00 6.53
2237 7264 2.229690 TAAGTGACCTAACGGCCGCC 62.230 60.000 28.58 8.18 0.00 6.13
2250 7277 4.745751 CCGCCGCCCGACTAAACA 62.746 66.667 0.00 0.00 40.02 2.83
2251 7278 2.510691 CGCCGCCCGACTAAACAT 60.511 61.111 0.00 0.00 40.02 2.71
2252 7279 1.227031 CGCCGCCCGACTAAACATA 60.227 57.895 0.00 0.00 40.02 2.29
2253 7280 1.485032 CGCCGCCCGACTAAACATAC 61.485 60.000 0.00 0.00 40.02 2.39
2254 7281 1.156034 GCCGCCCGACTAAACATACC 61.156 60.000 0.00 0.00 0.00 2.73
2255 7282 0.176219 CCGCCCGACTAAACATACCA 59.824 55.000 0.00 0.00 0.00 3.25
2256 7283 1.405797 CCGCCCGACTAAACATACCAA 60.406 52.381 0.00 0.00 0.00 3.67
2257 7284 2.557317 CGCCCGACTAAACATACCAAT 58.443 47.619 0.00 0.00 0.00 3.16
2258 7285 3.493002 CCGCCCGACTAAACATACCAATA 60.493 47.826 0.00 0.00 0.00 1.90
2259 7286 3.739300 CGCCCGACTAAACATACCAATAG 59.261 47.826 0.00 0.00 0.00 1.73
2260 7287 4.700700 GCCCGACTAAACATACCAATAGT 58.299 43.478 0.00 0.00 0.00 2.12
2261 7288 4.748600 GCCCGACTAAACATACCAATAGTC 59.251 45.833 0.00 0.00 40.40 2.59
2262 7289 5.682990 GCCCGACTAAACATACCAATAGTCA 60.683 44.000 11.13 0.00 42.70 3.41
2263 7290 5.751990 CCCGACTAAACATACCAATAGTCAC 59.248 44.000 11.13 0.00 42.70 3.67
2264 7291 5.751990 CCGACTAAACATACCAATAGTCACC 59.248 44.000 11.13 0.00 42.70 4.02
2265 7292 6.334989 CGACTAAACATACCAATAGTCACCA 58.665 40.000 11.13 0.00 42.70 4.17
2266 7293 6.814644 CGACTAAACATACCAATAGTCACCAA 59.185 38.462 11.13 0.00 42.70 3.67
2267 7294 7.332430 CGACTAAACATACCAATAGTCACCAAA 59.668 37.037 11.13 0.00 42.70 3.28
2268 7295 9.174166 GACTAAACATACCAATAGTCACCAAAT 57.826 33.333 6.86 0.00 42.33 2.32
2269 7296 9.528489 ACTAAACATACCAATAGTCACCAAATT 57.472 29.630 0.00 0.00 0.00 1.82
2271 7298 8.415950 AAACATACCAATAGTCACCAAATTCA 57.584 30.769 0.00 0.00 0.00 2.57
2272 7299 8.593945 AACATACCAATAGTCACCAAATTCAT 57.406 30.769 0.00 0.00 0.00 2.57
2273 7300 9.693739 AACATACCAATAGTCACCAAATTCATA 57.306 29.630 0.00 0.00 0.00 2.15
2274 7301 9.866655 ACATACCAATAGTCACCAAATTCATAT 57.133 29.630 0.00 0.00 0.00 1.78
2276 7303 7.587037 ACCAATAGTCACCAAATTCATATGG 57.413 36.000 2.13 0.00 42.60 2.74
2277 7304 6.550854 ACCAATAGTCACCAAATTCATATGGG 59.449 38.462 2.13 0.00 41.17 4.00
2278 7305 6.449698 CAATAGTCACCAAATTCATATGGGC 58.550 40.000 2.13 0.00 41.17 5.36
2279 7306 4.255510 AGTCACCAAATTCATATGGGCT 57.744 40.909 2.13 0.00 41.17 5.19
2280 7307 5.387113 AGTCACCAAATTCATATGGGCTA 57.613 39.130 2.13 0.00 41.17 3.93
2281 7308 5.133221 AGTCACCAAATTCATATGGGCTAC 58.867 41.667 2.13 0.00 41.17 3.58
2282 7309 5.103940 AGTCACCAAATTCATATGGGCTACT 60.104 40.000 2.13 0.76 41.17 2.57
2283 7310 5.009010 GTCACCAAATTCATATGGGCTACTG 59.991 44.000 2.13 0.00 41.17 2.74
2284 7311 5.104151 TCACCAAATTCATATGGGCTACTGA 60.104 40.000 2.13 0.00 41.17 3.41
2285 7312 5.240183 CACCAAATTCATATGGGCTACTGAG 59.760 44.000 2.13 0.00 41.17 3.35
2286 7313 4.763793 CCAAATTCATATGGGCTACTGAGG 59.236 45.833 2.13 0.00 32.87 3.86
2287 7314 5.456619 CCAAATTCATATGGGCTACTGAGGA 60.457 44.000 2.13 0.00 32.87 3.71
2288 7315 5.495926 AATTCATATGGGCTACTGAGGAG 57.504 43.478 2.13 0.00 0.00 3.69
2289 7316 3.619900 TCATATGGGCTACTGAGGAGT 57.380 47.619 2.13 0.00 36.07 3.85
2290 7317 4.741928 TCATATGGGCTACTGAGGAGTA 57.258 45.455 2.13 0.00 33.21 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 1.153289 CCTTGCTCCTGCTGCGTAT 60.153 57.895 0.00 0.00 40.48 3.06
256 257 4.338879 ACCTACATAGTGTAGTGTCGGTT 58.661 43.478 14.12 0.00 46.68 4.44
272 273 0.980423 TGCATGCACAGGTACCTACA 59.020 50.000 18.46 13.75 0.00 2.74
495 5522 2.804697 TGTTCGACTTCGGTTGATGA 57.195 45.000 0.00 0.00 38.09 2.92
497 5524 4.182693 TGTATGTTCGACTTCGGTTGAT 57.817 40.909 0.00 0.00 38.09 2.57
498 5525 3.646611 TGTATGTTCGACTTCGGTTGA 57.353 42.857 0.00 0.00 40.29 3.18
545 5572 0.324943 CCGCCCTTTCTTTCCTCTCA 59.675 55.000 0.00 0.00 0.00 3.27
547 5574 1.555533 CTACCGCCCTTTCTTTCCTCT 59.444 52.381 0.00 0.00 0.00 3.69
577 5604 3.936203 AGACGCGGCACCCTTTCA 61.936 61.111 17.71 0.00 0.00 2.69
621 5648 3.517296 TTTGTATCTTGTCTTGGGGCA 57.483 42.857 0.00 0.00 0.00 5.36
641 5668 1.381867 TCATGTCCCCTTCCCAACAT 58.618 50.000 0.00 0.00 32.73 2.71
759 5786 1.210931 CGTGAACTAGCGGACCGAA 59.789 57.895 20.50 3.30 0.00 4.30
785 5812 4.246458 GGCTCGTCTGTGATAACTTCTTT 58.754 43.478 0.00 0.00 0.00 2.52
814 5841 1.380403 CCACACGTGCAAGTTTCCCA 61.380 55.000 17.22 0.00 0.00 4.37
906 5933 8.978874 AAAAATTATTCCAGAATAAATGGGCC 57.021 30.769 14.92 0.00 43.83 5.80
935 5962 7.068716 GGCAGAAATATGTAAAATTGTCCCTCT 59.931 37.037 0.00 0.00 0.00 3.69
1017 6044 5.829924 AGAAGCATCAAACCTCTCTTTTTCA 59.170 36.000 0.00 0.00 0.00 2.69
1196 6223 7.012327 CACCTAAGATCAAATATTTTGAGCCGA 59.988 37.037 12.98 3.12 35.61 5.54
1229 6256 6.430000 GCACCCGAACAATAATATTCCATAGT 59.570 38.462 0.00 0.00 0.00 2.12
1232 6259 4.215399 CGCACCCGAACAATAATATTCCAT 59.785 41.667 0.00 0.00 36.29 3.41
1358 6385 2.685897 GAGATCGAGACACAGCCTTAGT 59.314 50.000 0.00 0.00 0.00 2.24
1380 6407 3.844657 CGTATCTTATCTTTCGCGCGTAT 59.155 43.478 30.98 19.96 0.00 3.06
1408 6435 2.021441 AGACCCATACCATAGAACCCCA 60.021 50.000 0.00 0.00 0.00 4.96
1436 6463 3.869065 TCCGTCATGGAATTAGACCAAC 58.131 45.455 0.00 0.00 46.38 3.77
1451 6478 3.733960 CACGCCGACTCTCCGTCA 61.734 66.667 0.00 0.00 42.98 4.35
1589 6616 2.333701 GACACTGGGTCGGGGTTTGT 62.334 60.000 0.00 0.00 36.65 2.83
1626 6653 2.399607 TTGGGCACTGGGTCCCTTT 61.400 57.895 10.00 0.00 42.20 3.11
1633 6660 2.046314 CGGTAGTTGGGCACTGGG 60.046 66.667 0.00 0.00 35.97 4.45
1847 6874 3.249189 ACAGGGCGGCCTTCTTCA 61.249 61.111 30.73 0.00 0.00 3.02
1880 6907 5.616270 TCTTATTGTGGCGGCTATTATGAA 58.384 37.500 11.43 0.00 0.00 2.57
1881 6908 5.222079 TCTTATTGTGGCGGCTATTATGA 57.778 39.130 11.43 5.60 0.00 2.15
1884 6911 5.676552 TCTTTCTTATTGTGGCGGCTATTA 58.323 37.500 11.43 0.00 0.00 0.98
1887 6914 3.620427 TCTTTCTTATTGTGGCGGCTA 57.380 42.857 11.43 0.00 0.00 3.93
1892 6919 3.922850 GCTTGCTTCTTTCTTATTGTGGC 59.077 43.478 0.00 0.00 0.00 5.01
1896 6923 7.044445 GCTATTTCGCTTGCTTCTTTCTTATTG 60.044 37.037 0.00 0.00 0.00 1.90
1897 6924 6.969473 GCTATTTCGCTTGCTTCTTTCTTATT 59.031 34.615 0.00 0.00 0.00 1.40
1898 6925 6.317391 AGCTATTTCGCTTGCTTCTTTCTTAT 59.683 34.615 0.00 0.00 36.74 1.73
1899 6926 5.643777 AGCTATTTCGCTTGCTTCTTTCTTA 59.356 36.000 0.00 0.00 36.74 2.10
1900 6927 4.457257 AGCTATTTCGCTTGCTTCTTTCTT 59.543 37.500 0.00 0.00 36.74 2.52
1901 6928 4.006319 AGCTATTTCGCTTGCTTCTTTCT 58.994 39.130 0.00 0.00 36.74 2.52
1902 6929 4.348198 AGCTATTTCGCTTGCTTCTTTC 57.652 40.909 0.00 0.00 36.74 2.62
1903 6930 5.178797 TCTAGCTATTTCGCTTGCTTCTTT 58.821 37.500 0.00 0.00 41.30 2.52
1904 6931 4.759782 TCTAGCTATTTCGCTTGCTTCTT 58.240 39.130 0.00 0.00 41.30 2.52
1905 6932 4.392921 TCTAGCTATTTCGCTTGCTTCT 57.607 40.909 0.00 0.00 41.30 2.85
1906 6933 4.551797 GCTTCTAGCTATTTCGCTTGCTTC 60.552 45.833 0.00 0.00 41.30 3.86
1907 6934 3.311048 GCTTCTAGCTATTTCGCTTGCTT 59.689 43.478 0.00 0.00 41.30 3.91
1908 6935 2.869192 GCTTCTAGCTATTTCGCTTGCT 59.131 45.455 0.00 0.00 41.30 3.91
1909 6936 2.348032 CGCTTCTAGCTATTTCGCTTGC 60.348 50.000 0.00 0.00 39.60 4.01
1910 6937 2.348032 GCGCTTCTAGCTATTTCGCTTG 60.348 50.000 16.99 0.00 39.60 4.01
1911 6938 1.861575 GCGCTTCTAGCTATTTCGCTT 59.138 47.619 16.99 0.00 39.60 4.68
1912 6939 1.067821 AGCGCTTCTAGCTATTTCGCT 59.932 47.619 19.58 19.58 44.05 4.93
1913 6940 1.453900 GAGCGCTTCTAGCTATTTCGC 59.546 52.381 13.26 16.71 46.13 4.70
1914 6941 1.711298 CGAGCGCTTCTAGCTATTTCG 59.289 52.381 13.26 1.40 46.13 3.46
1915 6942 1.453900 GCGAGCGCTTCTAGCTATTTC 59.546 52.381 13.26 0.00 46.13 2.17
1916 6943 1.492720 GCGAGCGCTTCTAGCTATTT 58.507 50.000 13.26 0.00 46.13 1.40
1917 6944 3.187211 GCGAGCGCTTCTAGCTATT 57.813 52.632 13.26 0.00 46.13 1.73
1918 6945 4.955089 GCGAGCGCTTCTAGCTAT 57.045 55.556 13.26 0.00 46.13 2.97
1939 6966 1.928706 TAAGAATTGTTGGGCGCGGC 61.929 55.000 26.39 26.39 0.00 6.53
1940 6967 0.738389 ATAAGAATTGTTGGGCGCGG 59.262 50.000 8.83 0.00 0.00 6.46
1941 6968 2.159448 TGAATAAGAATTGTTGGGCGCG 60.159 45.455 0.00 0.00 26.07 6.86
1942 6969 3.179048 GTGAATAAGAATTGTTGGGCGC 58.821 45.455 0.00 0.00 26.07 6.53
1943 6970 3.425404 CGTGAATAAGAATTGTTGGGCG 58.575 45.455 0.00 0.00 26.07 6.13
1944 6971 3.428862 CCCGTGAATAAGAATTGTTGGGC 60.429 47.826 0.00 0.00 26.07 5.36
1945 6972 4.013728 TCCCGTGAATAAGAATTGTTGGG 58.986 43.478 0.00 0.00 31.68 4.12
1946 6973 5.637006 TTCCCGTGAATAAGAATTGTTGG 57.363 39.130 0.00 0.00 26.07 3.77
1947 6974 5.572896 GCTTTCCCGTGAATAAGAATTGTTG 59.427 40.000 0.00 0.00 26.07 3.33
1948 6975 5.336451 GGCTTTCCCGTGAATAAGAATTGTT 60.336 40.000 0.00 0.00 29.71 2.83
1949 6976 4.157840 GGCTTTCCCGTGAATAAGAATTGT 59.842 41.667 0.00 0.00 0.00 2.71
1950 6977 4.157656 TGGCTTTCCCGTGAATAAGAATTG 59.842 41.667 0.00 0.00 35.87 2.32
1951 6978 4.340617 TGGCTTTCCCGTGAATAAGAATT 58.659 39.130 0.00 0.00 35.87 2.17
1952 6979 3.963129 TGGCTTTCCCGTGAATAAGAAT 58.037 40.909 0.00 0.00 35.87 2.40
1953 6980 3.426787 TGGCTTTCCCGTGAATAAGAA 57.573 42.857 0.00 0.00 35.87 2.52
1954 6981 3.078837 GTTGGCTTTCCCGTGAATAAGA 58.921 45.455 0.00 0.00 35.87 2.10
1955 6982 2.163613 GGTTGGCTTTCCCGTGAATAAG 59.836 50.000 0.00 0.00 35.87 1.73
1956 6983 2.164338 GGTTGGCTTTCCCGTGAATAA 58.836 47.619 0.00 0.00 35.87 1.40
1957 6984 1.828979 GGTTGGCTTTCCCGTGAATA 58.171 50.000 0.00 0.00 35.87 1.75
1958 6985 1.241315 CGGTTGGCTTTCCCGTGAAT 61.241 55.000 0.00 0.00 37.00 2.57
1959 6986 1.894756 CGGTTGGCTTTCCCGTGAA 60.895 57.895 0.00 0.00 37.00 3.18
1960 6987 2.281208 CGGTTGGCTTTCCCGTGA 60.281 61.111 0.00 0.00 37.00 4.35
1961 6988 1.448922 TTTCGGTTGGCTTTCCCGTG 61.449 55.000 0.00 0.00 42.30 4.94
1962 6989 1.152922 TTTCGGTTGGCTTTCCCGT 60.153 52.632 0.00 0.00 42.30 5.28
1963 6990 0.887387 TCTTTCGGTTGGCTTTCCCG 60.887 55.000 0.00 0.00 43.03 5.14
1964 6991 1.545841 ATCTTTCGGTTGGCTTTCCC 58.454 50.000 0.00 0.00 0.00 3.97
1965 6992 3.217599 GAATCTTTCGGTTGGCTTTCC 57.782 47.619 0.00 0.00 0.00 3.13
1966 6993 3.127030 ATCGAATCTTTCGGTTGGCTTTC 59.873 43.478 9.50 0.00 45.71 2.62
1967 6994 3.081804 ATCGAATCTTTCGGTTGGCTTT 58.918 40.909 9.50 0.00 45.71 3.51
1968 6995 2.711542 ATCGAATCTTTCGGTTGGCTT 58.288 42.857 9.50 0.00 45.71 4.35
1969 6996 2.403252 ATCGAATCTTTCGGTTGGCT 57.597 45.000 9.50 0.00 45.71 4.75
1974 7001 8.712778 ACGAAGTCTGAATCGAATCTTTCGGT 62.713 42.308 21.69 0.00 44.63 4.69
1977 7004 6.967767 TCTACGAAGTCTGAATCGAATCTTTC 59.032 38.462 17.60 0.00 43.93 2.62
1978 7005 6.853720 TCTACGAAGTCTGAATCGAATCTTT 58.146 36.000 17.60 1.18 43.93 2.52
1979 7006 6.438259 TCTACGAAGTCTGAATCGAATCTT 57.562 37.500 17.60 0.00 43.93 2.40
1980 7007 5.504994 GCTCTACGAAGTCTGAATCGAATCT 60.505 44.000 17.60 2.04 43.93 2.40
1981 7008 4.673311 GCTCTACGAAGTCTGAATCGAATC 59.327 45.833 17.60 0.00 43.93 2.52
1982 7009 4.498345 GGCTCTACGAAGTCTGAATCGAAT 60.498 45.833 17.60 2.90 43.93 3.34
1983 7010 3.181499 GGCTCTACGAAGTCTGAATCGAA 60.181 47.826 17.60 5.34 43.93 3.71
1984 7011 2.355132 GGCTCTACGAAGTCTGAATCGA 59.645 50.000 17.60 0.00 43.93 3.59
1985 7012 2.722071 GGCTCTACGAAGTCTGAATCG 58.278 52.381 11.24 11.24 43.93 3.34
1986 7013 2.541999 CCGGCTCTACGAAGTCTGAATC 60.542 54.545 0.00 0.00 43.93 2.52
1987 7014 1.405821 CCGGCTCTACGAAGTCTGAAT 59.594 52.381 0.00 0.00 43.93 2.57
1988 7015 0.809385 CCGGCTCTACGAAGTCTGAA 59.191 55.000 0.00 0.00 43.93 3.02
1989 7016 0.322277 ACCGGCTCTACGAAGTCTGA 60.322 55.000 0.00 0.00 43.93 3.27
1990 7017 0.179161 CACCGGCTCTACGAAGTCTG 60.179 60.000 0.00 0.00 43.93 3.51
1991 7018 1.935327 GCACCGGCTCTACGAAGTCT 61.935 60.000 0.00 0.00 38.61 3.24
1992 7019 1.516603 GCACCGGCTCTACGAAGTC 60.517 63.158 0.00 0.00 38.61 3.01
1993 7020 2.572284 GCACCGGCTCTACGAAGT 59.428 61.111 0.00 0.00 40.53 3.01
2003 7030 2.369257 TAGATAGCAGCAGCACCGGC 62.369 60.000 0.00 0.00 45.49 6.13
2004 7031 0.598680 GTAGATAGCAGCAGCACCGG 60.599 60.000 3.17 0.00 45.49 5.28
2005 7032 0.103026 TGTAGATAGCAGCAGCACCG 59.897 55.000 3.17 0.00 45.49 4.94
2006 7033 2.540265 ATGTAGATAGCAGCAGCACC 57.460 50.000 3.17 0.00 45.49 5.01
2007 7034 3.583806 CCTATGTAGATAGCAGCAGCAC 58.416 50.000 3.17 0.00 45.49 4.40
2008 7035 2.564504 CCCTATGTAGATAGCAGCAGCA 59.435 50.000 3.17 0.00 45.49 4.41
2009 7036 2.676463 GCCCTATGTAGATAGCAGCAGC 60.676 54.545 12.51 0.00 42.56 5.25
2010 7037 2.093764 GGCCCTATGTAGATAGCAGCAG 60.094 54.545 16.78 0.00 34.14 4.24
2011 7038 1.902508 GGCCCTATGTAGATAGCAGCA 59.097 52.381 16.78 0.00 34.14 4.41
2012 7039 2.183679 AGGCCCTATGTAGATAGCAGC 58.816 52.381 0.00 10.12 32.77 5.25
2013 7040 3.196685 GGAAGGCCCTATGTAGATAGCAG 59.803 52.174 0.00 0.00 31.52 4.24
2014 7041 3.173965 GGAAGGCCCTATGTAGATAGCA 58.826 50.000 0.00 0.00 31.52 3.49
2015 7042 3.897141 GGAAGGCCCTATGTAGATAGC 57.103 52.381 0.00 0.00 31.52 2.97
2045 7072 3.793888 CCCTTAGCACCCCGGGAC 61.794 72.222 26.32 11.51 39.08 4.46
2048 7075 2.435120 AAAACCCCTTAGCACCCCGG 62.435 60.000 0.00 0.00 0.00 5.73
2049 7076 1.076014 AAAACCCCTTAGCACCCCG 59.924 57.895 0.00 0.00 0.00 5.73
2050 7077 0.178944 ACAAAACCCCTTAGCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
2051 7078 1.712056 AACAAAACCCCTTAGCACCC 58.288 50.000 0.00 0.00 0.00 4.61
2052 7079 3.830744 AAAACAAAACCCCTTAGCACC 57.169 42.857 0.00 0.00 0.00 5.01
2053 7080 4.585581 TCCTAAAACAAAACCCCTTAGCAC 59.414 41.667 0.00 0.00 0.00 4.40
2054 7081 4.805744 TCCTAAAACAAAACCCCTTAGCA 58.194 39.130 0.00 0.00 0.00 3.49
2055 7082 5.069383 TGTTCCTAAAACAAAACCCCTTAGC 59.931 40.000 0.00 0.00 0.00 3.09
2056 7083 6.718522 TGTTCCTAAAACAAAACCCCTTAG 57.281 37.500 0.00 0.00 0.00 2.18
2057 7084 6.405619 CGTTGTTCCTAAAACAAAACCCCTTA 60.406 38.462 5.02 0.00 41.23 2.69
2058 7085 5.624967 CGTTGTTCCTAAAACAAAACCCCTT 60.625 40.000 5.02 0.00 41.23 3.95
2059 7086 4.142116 CGTTGTTCCTAAAACAAAACCCCT 60.142 41.667 5.02 0.00 41.23 4.79
2060 7087 4.114073 CGTTGTTCCTAAAACAAAACCCC 58.886 43.478 5.02 0.00 41.23 4.95
2061 7088 4.114073 CCGTTGTTCCTAAAACAAAACCC 58.886 43.478 5.02 0.00 41.23 4.11
2062 7089 3.552699 GCCGTTGTTCCTAAAACAAAACC 59.447 43.478 5.02 0.00 41.23 3.27
2063 7090 3.241091 CGCCGTTGTTCCTAAAACAAAAC 59.759 43.478 5.02 0.00 41.23 2.43
2064 7091 3.436496 CGCCGTTGTTCCTAAAACAAAA 58.564 40.909 5.02 0.00 41.23 2.44
2065 7092 2.223525 CCGCCGTTGTTCCTAAAACAAA 60.224 45.455 5.02 0.00 41.23 2.83
2066 7093 1.334243 CCGCCGTTGTTCCTAAAACAA 59.666 47.619 0.00 0.00 37.76 2.83
2067 7094 0.945813 CCGCCGTTGTTCCTAAAACA 59.054 50.000 0.00 0.00 0.00 2.83
2068 7095 0.946528 ACCGCCGTTGTTCCTAAAAC 59.053 50.000 0.00 0.00 0.00 2.43
2069 7096 0.945813 CACCGCCGTTGTTCCTAAAA 59.054 50.000 0.00 0.00 0.00 1.52
2070 7097 0.179051 ACACCGCCGTTGTTCCTAAA 60.179 50.000 0.00 0.00 0.00 1.85
2071 7098 0.179051 AACACCGCCGTTGTTCCTAA 60.179 50.000 0.00 0.00 0.00 2.69
2072 7099 0.179051 AAACACCGCCGTTGTTCCTA 60.179 50.000 0.00 0.00 0.00 2.94
2073 7100 1.033202 AAAACACCGCCGTTGTTCCT 61.033 50.000 0.00 0.00 0.00 3.36
2074 7101 0.868177 CAAAACACCGCCGTTGTTCC 60.868 55.000 0.00 0.00 0.00 3.62
2075 7102 1.476235 GCAAAACACCGCCGTTGTTC 61.476 55.000 0.00 0.00 0.00 3.18
2076 7103 1.517475 GCAAAACACCGCCGTTGTT 60.517 52.632 0.00 0.00 0.00 2.83
2077 7104 2.103340 GCAAAACACCGCCGTTGT 59.897 55.556 0.00 0.00 0.00 3.32
2078 7105 1.943693 CAGCAAAACACCGCCGTTG 60.944 57.895 0.00 0.00 0.00 4.10
2079 7106 2.115911 TCAGCAAAACACCGCCGTT 61.116 52.632 0.00 0.00 0.00 4.44
2080 7107 2.515057 TCAGCAAAACACCGCCGT 60.515 55.556 0.00 0.00 0.00 5.68
2081 7108 2.051345 GTCAGCAAAACACCGCCG 60.051 61.111 0.00 0.00 0.00 6.46
2082 7109 2.051345 CGTCAGCAAAACACCGCC 60.051 61.111 0.00 0.00 0.00 6.13
2083 7110 2.725815 GCGTCAGCAAAACACCGC 60.726 61.111 0.00 0.00 44.35 5.68
2093 7120 1.710339 GTTGATTCGAGGCGTCAGC 59.290 57.895 7.26 0.00 44.18 4.26
2094 7121 1.991430 CGTTGATTCGAGGCGTCAG 59.009 57.895 7.26 0.00 0.00 3.51
2095 7122 2.092291 GCGTTGATTCGAGGCGTCA 61.092 57.895 7.26 0.00 0.00 4.35
2096 7123 1.352156 AAGCGTTGATTCGAGGCGTC 61.352 55.000 11.81 0.00 34.29 5.19
2097 7124 0.949105 AAAGCGTTGATTCGAGGCGT 60.949 50.000 11.81 7.00 34.29 5.68
2098 7125 0.165944 AAAAGCGTTGATTCGAGGCG 59.834 50.000 11.81 0.00 34.29 5.52
2099 7126 1.069227 ACAAAAGCGTTGATTCGAGGC 60.069 47.619 10.04 10.04 0.00 4.70
2100 7127 2.969443 ACAAAAGCGTTGATTCGAGG 57.031 45.000 9.79 0.00 0.00 4.63
2109 7136 2.159254 AGCATGTCACAACAAAAGCGTT 60.159 40.909 0.00 0.00 39.30 4.84
2110 7137 1.405105 AGCATGTCACAACAAAAGCGT 59.595 42.857 0.00 0.00 39.30 5.07
2111 7138 2.124011 AGCATGTCACAACAAAAGCG 57.876 45.000 0.00 0.00 39.30 4.68
2112 7139 4.610945 ACTTAGCATGTCACAACAAAAGC 58.389 39.130 0.00 0.00 39.30 3.51
2113 7140 7.489113 AGAAAACTTAGCATGTCACAACAAAAG 59.511 33.333 0.00 0.00 39.30 2.27
2114 7141 7.319646 AGAAAACTTAGCATGTCACAACAAAA 58.680 30.769 0.00 0.00 39.30 2.44
2115 7142 6.862209 AGAAAACTTAGCATGTCACAACAAA 58.138 32.000 0.00 0.00 39.30 2.83
2116 7143 6.449635 AGAAAACTTAGCATGTCACAACAA 57.550 33.333 0.00 0.00 39.30 2.83
2117 7144 5.008613 GGAGAAAACTTAGCATGTCACAACA 59.991 40.000 0.00 0.00 40.38 3.33
2118 7145 5.452777 GGAGAAAACTTAGCATGTCACAAC 58.547 41.667 0.00 0.00 0.00 3.32
2119 7146 4.518970 GGGAGAAAACTTAGCATGTCACAA 59.481 41.667 0.00 0.00 0.00 3.33
2120 7147 4.072131 GGGAGAAAACTTAGCATGTCACA 58.928 43.478 0.00 0.00 0.00 3.58
2121 7148 3.440522 GGGGAGAAAACTTAGCATGTCAC 59.559 47.826 0.00 0.00 0.00 3.67
2122 7149 3.330701 AGGGGAGAAAACTTAGCATGTCA 59.669 43.478 0.00 0.00 0.00 3.58
2123 7150 3.956744 AGGGGAGAAAACTTAGCATGTC 58.043 45.455 0.00 0.00 0.00 3.06
2124 7151 5.717119 ATAGGGGAGAAAACTTAGCATGT 57.283 39.130 0.00 0.00 0.00 3.21
2125 7152 5.221126 GCAATAGGGGAGAAAACTTAGCATG 60.221 44.000 0.00 0.00 0.00 4.06
2126 7153 4.889995 GCAATAGGGGAGAAAACTTAGCAT 59.110 41.667 0.00 0.00 0.00 3.79
2127 7154 4.018415 AGCAATAGGGGAGAAAACTTAGCA 60.018 41.667 0.00 0.00 0.00 3.49
2128 7155 4.527944 AGCAATAGGGGAGAAAACTTAGC 58.472 43.478 0.00 0.00 0.00 3.09
2129 7156 6.890293 ACTAGCAATAGGGGAGAAAACTTAG 58.110 40.000 0.00 0.00 0.00 2.18
2130 7157 6.886178 ACTAGCAATAGGGGAGAAAACTTA 57.114 37.500 0.00 0.00 0.00 2.24
2131 7158 5.780958 ACTAGCAATAGGGGAGAAAACTT 57.219 39.130 0.00 0.00 0.00 2.66
2132 7159 5.367060 CCTACTAGCAATAGGGGAGAAAACT 59.633 44.000 0.00 0.00 36.33 2.66
2133 7160 5.130643 ACCTACTAGCAATAGGGGAGAAAAC 59.869 44.000 9.17 0.00 43.19 2.43
2134 7161 5.286221 ACCTACTAGCAATAGGGGAGAAAA 58.714 41.667 9.17 0.00 43.19 2.29
2135 7162 4.892198 ACCTACTAGCAATAGGGGAGAAA 58.108 43.478 9.17 0.00 43.19 2.52
2136 7163 4.554553 ACCTACTAGCAATAGGGGAGAA 57.445 45.455 9.17 0.00 43.19 2.87
2137 7164 4.078805 TCAACCTACTAGCAATAGGGGAGA 60.079 45.833 9.17 2.51 43.19 3.71
2138 7165 4.223953 TCAACCTACTAGCAATAGGGGAG 58.776 47.826 9.17 0.61 43.19 4.30
2139 7166 4.274794 TCAACCTACTAGCAATAGGGGA 57.725 45.455 9.17 4.43 43.19 4.81
2140 7167 4.263068 CCATCAACCTACTAGCAATAGGGG 60.263 50.000 9.17 2.54 43.19 4.79
2141 7168 4.263068 CCCATCAACCTACTAGCAATAGGG 60.263 50.000 9.17 0.00 43.19 3.53
2142 7169 4.348168 ACCCATCAACCTACTAGCAATAGG 59.652 45.833 3.84 3.84 44.29 2.57
2143 7170 5.542779 GACCCATCAACCTACTAGCAATAG 58.457 45.833 0.00 0.00 0.00 1.73
2144 7171 4.038763 CGACCCATCAACCTACTAGCAATA 59.961 45.833 0.00 0.00 0.00 1.90
2145 7172 3.181465 CGACCCATCAACCTACTAGCAAT 60.181 47.826 0.00 0.00 0.00 3.56
2146 7173 2.167693 CGACCCATCAACCTACTAGCAA 59.832 50.000 0.00 0.00 0.00 3.91
2147 7174 1.754803 CGACCCATCAACCTACTAGCA 59.245 52.381 0.00 0.00 0.00 3.49
2148 7175 1.538419 GCGACCCATCAACCTACTAGC 60.538 57.143 0.00 0.00 0.00 3.42
2149 7176 1.754803 TGCGACCCATCAACCTACTAG 59.245 52.381 0.00 0.00 0.00 2.57
2150 7177 1.479323 GTGCGACCCATCAACCTACTA 59.521 52.381 0.00 0.00 0.00 1.82
2151 7178 0.249398 GTGCGACCCATCAACCTACT 59.751 55.000 0.00 0.00 0.00 2.57
2152 7179 0.036765 TGTGCGACCCATCAACCTAC 60.037 55.000 0.00 0.00 0.00 3.18
2153 7180 0.036765 GTGTGCGACCCATCAACCTA 60.037 55.000 0.00 0.00 0.00 3.08
2154 7181 1.302511 GTGTGCGACCCATCAACCT 60.303 57.895 0.00 0.00 0.00 3.50
2155 7182 2.332654 GGTGTGCGACCCATCAACC 61.333 63.158 0.00 0.00 39.10 3.77
2156 7183 3.263941 GGTGTGCGACCCATCAAC 58.736 61.111 0.00 0.00 39.10 3.18
2167 7194 4.041917 CATGTGTGCCGGGTGTGC 62.042 66.667 2.18 0.00 0.00 4.57
2168 7195 1.733402 AAACATGTGTGCCGGGTGTG 61.733 55.000 2.18 0.00 0.00 3.82
2169 7196 1.040339 AAAACATGTGTGCCGGGTGT 61.040 50.000 2.18 0.00 0.00 4.16
2170 7197 0.318614 GAAAACATGTGTGCCGGGTG 60.319 55.000 2.18 0.00 0.00 4.61
2171 7198 1.791103 CGAAAACATGTGTGCCGGGT 61.791 55.000 2.18 0.00 0.00 5.28
2172 7199 1.081509 CGAAAACATGTGTGCCGGG 60.082 57.895 2.18 0.00 0.00 5.73
2173 7200 1.729131 GCGAAAACATGTGTGCCGG 60.729 57.895 0.00 0.00 0.00 6.13
2174 7201 1.729131 GGCGAAAACATGTGTGCCG 60.729 57.895 13.10 9.98 32.14 5.69
2175 7202 0.031994 AAGGCGAAAACATGTGTGCC 59.968 50.000 18.18 18.18 42.76 5.01
2176 7203 1.130955 CAAGGCGAAAACATGTGTGC 58.869 50.000 0.00 0.88 0.00 4.57
2177 7204 1.130955 GCAAGGCGAAAACATGTGTG 58.869 50.000 0.00 0.00 0.00 3.82
2178 7205 1.032014 AGCAAGGCGAAAACATGTGT 58.968 45.000 0.00 0.00 0.00 3.72
2179 7206 1.788308 CAAGCAAGGCGAAAACATGTG 59.212 47.619 0.00 0.00 0.00 3.21
2180 7207 1.408702 ACAAGCAAGGCGAAAACATGT 59.591 42.857 0.00 0.00 0.00 3.21
2181 7208 1.788308 CACAAGCAAGGCGAAAACATG 59.212 47.619 0.00 0.00 0.00 3.21
2182 7209 1.408702 ACACAAGCAAGGCGAAAACAT 59.591 42.857 0.00 0.00 0.00 2.71
2183 7210 0.814457 ACACAAGCAAGGCGAAAACA 59.186 45.000 0.00 0.00 0.00 2.83
2184 7211 1.199624 CACACAAGCAAGGCGAAAAC 58.800 50.000 0.00 0.00 0.00 2.43
2185 7212 0.814457 ACACACAAGCAAGGCGAAAA 59.186 45.000 0.00 0.00 0.00 2.29
2186 7213 0.380378 GACACACAAGCAAGGCGAAA 59.620 50.000 0.00 0.00 0.00 3.46
2187 7214 1.444119 GGACACACAAGCAAGGCGAA 61.444 55.000 0.00 0.00 0.00 4.70
2188 7215 1.891919 GGACACACAAGCAAGGCGA 60.892 57.895 0.00 0.00 0.00 5.54
2189 7216 1.518056 ATGGACACACAAGCAAGGCG 61.518 55.000 0.00 0.00 0.00 5.52
2190 7217 1.533625 TATGGACACACAAGCAAGGC 58.466 50.000 0.00 0.00 0.00 4.35
2191 7218 3.149196 AGTTATGGACACACAAGCAAGG 58.851 45.455 0.00 0.00 0.00 3.61
2192 7219 3.814842 TGAGTTATGGACACACAAGCAAG 59.185 43.478 0.00 0.00 0.00 4.01
2193 7220 3.814625 TGAGTTATGGACACACAAGCAA 58.185 40.909 0.00 0.00 0.00 3.91
2194 7221 3.483808 TGAGTTATGGACACACAAGCA 57.516 42.857 0.00 0.00 0.00 3.91
2195 7222 4.829064 TTTGAGTTATGGACACACAAGC 57.171 40.909 0.00 0.00 0.00 4.01
2196 7223 8.567948 ACTTATTTTGAGTTATGGACACACAAG 58.432 33.333 0.00 0.00 0.00 3.16
2197 7224 8.349245 CACTTATTTTGAGTTATGGACACACAA 58.651 33.333 0.00 0.00 0.00 3.33
2198 7225 7.717436 TCACTTATTTTGAGTTATGGACACACA 59.283 33.333 0.00 0.00 0.00 3.72
2199 7226 8.015658 GTCACTTATTTTGAGTTATGGACACAC 58.984 37.037 0.00 0.00 0.00 3.82
2200 7227 7.174253 GGTCACTTATTTTGAGTTATGGACACA 59.826 37.037 0.00 0.00 0.00 3.72
2201 7228 7.390718 AGGTCACTTATTTTGAGTTATGGACAC 59.609 37.037 0.00 0.00 0.00 3.67
2202 7229 7.458397 AGGTCACTTATTTTGAGTTATGGACA 58.542 34.615 0.00 0.00 0.00 4.02
2203 7230 7.923414 AGGTCACTTATTTTGAGTTATGGAC 57.077 36.000 0.00 0.00 0.00 4.02
2204 7231 9.444600 GTTAGGTCACTTATTTTGAGTTATGGA 57.555 33.333 0.00 0.00 0.00 3.41
2205 7232 8.388103 CGTTAGGTCACTTATTTTGAGTTATGG 58.612 37.037 0.00 0.00 0.00 2.74
2206 7233 8.388103 CCGTTAGGTCACTTATTTTGAGTTATG 58.612 37.037 0.00 0.00 0.00 1.90
2207 7234 7.065443 GCCGTTAGGTCACTTATTTTGAGTTAT 59.935 37.037 0.00 0.00 40.50 1.89
2208 7235 6.369615 GCCGTTAGGTCACTTATTTTGAGTTA 59.630 38.462 0.00 0.00 40.50 2.24
2209 7236 5.180680 GCCGTTAGGTCACTTATTTTGAGTT 59.819 40.000 0.00 0.00 40.50 3.01
2210 7237 4.694037 GCCGTTAGGTCACTTATTTTGAGT 59.306 41.667 0.00 0.00 40.50 3.41
2211 7238 4.094442 GGCCGTTAGGTCACTTATTTTGAG 59.906 45.833 0.00 0.00 43.06 3.02
2212 7239 4.004982 GGCCGTTAGGTCACTTATTTTGA 58.995 43.478 0.00 0.00 43.06 2.69
2213 7240 3.181514 CGGCCGTTAGGTCACTTATTTTG 60.182 47.826 19.50 0.00 43.99 2.44
2214 7241 3.004862 CGGCCGTTAGGTCACTTATTTT 58.995 45.455 19.50 0.00 43.99 1.82
2215 7242 2.624636 CGGCCGTTAGGTCACTTATTT 58.375 47.619 19.50 0.00 43.99 1.40
2216 7243 1.741394 GCGGCCGTTAGGTCACTTATT 60.741 52.381 28.70 0.00 43.99 1.40
2217 7244 0.179092 GCGGCCGTTAGGTCACTTAT 60.179 55.000 28.70 0.00 43.99 1.73
2218 7245 1.216178 GCGGCCGTTAGGTCACTTA 59.784 57.895 28.70 0.00 43.99 2.24
2219 7246 2.047560 GCGGCCGTTAGGTCACTT 60.048 61.111 28.70 0.00 43.99 3.16
2220 7247 4.078516 GGCGGCCGTTAGGTCACT 62.079 66.667 28.70 0.00 43.99 3.41
2233 7260 2.632136 TATGTTTAGTCGGGCGGCGG 62.632 60.000 9.78 10.49 0.00 6.13
2234 7261 1.227031 TATGTTTAGTCGGGCGGCG 60.227 57.895 0.51 0.51 0.00 6.46
2235 7262 1.156034 GGTATGTTTAGTCGGGCGGC 61.156 60.000 0.00 0.00 0.00 6.53
2236 7263 0.176219 TGGTATGTTTAGTCGGGCGG 59.824 55.000 0.00 0.00 0.00 6.13
2237 7264 2.012937 TTGGTATGTTTAGTCGGGCG 57.987 50.000 0.00 0.00 0.00 6.13
2238 7265 4.700700 ACTATTGGTATGTTTAGTCGGGC 58.299 43.478 0.00 0.00 0.00 6.13
2239 7266 5.751990 GTGACTATTGGTATGTTTAGTCGGG 59.248 44.000 0.00 0.00 42.13 5.14
2240 7267 5.751990 GGTGACTATTGGTATGTTTAGTCGG 59.248 44.000 0.00 0.00 42.13 4.79
2241 7268 6.334989 TGGTGACTATTGGTATGTTTAGTCG 58.665 40.000 0.00 0.00 42.13 4.18
2242 7269 8.556213 TTTGGTGACTATTGGTATGTTTAGTC 57.444 34.615 0.00 0.00 40.49 2.59
2243 7270 9.528489 AATTTGGTGACTATTGGTATGTTTAGT 57.472 29.630 0.00 0.00 0.00 2.24
2245 7272 9.521841 TGAATTTGGTGACTATTGGTATGTTTA 57.478 29.630 0.00 0.00 0.00 2.01
2246 7273 8.415950 TGAATTTGGTGACTATTGGTATGTTT 57.584 30.769 0.00 0.00 0.00 2.83
2247 7274 8.593945 ATGAATTTGGTGACTATTGGTATGTT 57.406 30.769 0.00 0.00 0.00 2.71
2248 7275 9.866655 ATATGAATTTGGTGACTATTGGTATGT 57.133 29.630 0.00 0.00 0.00 2.29
2250 7277 9.300681 CCATATGAATTTGGTGACTATTGGTAT 57.699 33.333 3.65 0.00 0.00 2.73
2251 7278 7.723616 CCCATATGAATTTGGTGACTATTGGTA 59.276 37.037 3.65 0.00 0.00 3.25
2252 7279 6.550854 CCCATATGAATTTGGTGACTATTGGT 59.449 38.462 3.65 0.00 0.00 3.67
2253 7280 6.517194 GCCCATATGAATTTGGTGACTATTGG 60.517 42.308 3.65 0.00 0.00 3.16
2254 7281 6.266103 AGCCCATATGAATTTGGTGACTATTG 59.734 38.462 3.65 0.00 0.00 1.90
2255 7282 6.376248 AGCCCATATGAATTTGGTGACTATT 58.624 36.000 3.65 0.00 0.00 1.73
2256 7283 5.957132 AGCCCATATGAATTTGGTGACTAT 58.043 37.500 3.65 0.00 0.00 2.12
2257 7284 5.387113 AGCCCATATGAATTTGGTGACTA 57.613 39.130 3.65 0.00 0.00 2.59
2258 7285 4.255510 AGCCCATATGAATTTGGTGACT 57.744 40.909 3.65 0.00 0.00 3.41
2259 7286 5.009010 CAGTAGCCCATATGAATTTGGTGAC 59.991 44.000 3.65 0.00 0.00 3.67
2260 7287 5.104151 TCAGTAGCCCATATGAATTTGGTGA 60.104 40.000 3.65 0.00 0.00 4.02
2261 7288 5.132502 TCAGTAGCCCATATGAATTTGGTG 58.867 41.667 3.65 0.00 0.00 4.17
2262 7289 5.380043 CTCAGTAGCCCATATGAATTTGGT 58.620 41.667 3.65 0.00 0.00 3.67
2263 7290 4.763793 CCTCAGTAGCCCATATGAATTTGG 59.236 45.833 3.65 0.00 0.00 3.28
2264 7291 5.624159 TCCTCAGTAGCCCATATGAATTTG 58.376 41.667 3.65 0.00 0.00 2.32
2265 7292 5.370880 ACTCCTCAGTAGCCCATATGAATTT 59.629 40.000 3.65 0.00 0.00 1.82
2266 7293 4.910304 ACTCCTCAGTAGCCCATATGAATT 59.090 41.667 3.65 0.00 0.00 2.17
2267 7294 4.497516 ACTCCTCAGTAGCCCATATGAAT 58.502 43.478 3.65 0.00 0.00 2.57
2268 7295 3.928754 ACTCCTCAGTAGCCCATATGAA 58.071 45.455 3.65 0.00 0.00 2.57
2269 7296 3.619900 ACTCCTCAGTAGCCCATATGA 57.380 47.619 3.65 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.