Multiple sequence alignment - TraesCS6A01G202400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G202400 chr6A 100.000 4673 0 0 1 4673 338195281 338190609 0.000000e+00 8630.0
1 TraesCS6A01G202400 chr6A 96.364 55 2 0 1194 1248 338193901 338193847 1.790000e-14 91.6
2 TraesCS6A01G202400 chr1B 91.163 3225 177 50 1416 4582 282853451 282850277 0.000000e+00 4277.0
3 TraesCS6A01G202400 chr1B 91.747 521 33 8 680 1200 282853953 282853443 0.000000e+00 715.0
4 TraesCS6A01G202400 chr1B 99.367 158 1 0 1249 1406 47635576 47635733 2.130000e-73 287.0
5 TraesCS6A01G202400 chr2B 91.732 2056 95 21 2667 4673 491566982 491564953 0.000000e+00 2785.0
6 TraesCS6A01G202400 chr2B 91.790 1279 72 18 1416 2689 491568243 491566993 0.000000e+00 1749.0
7 TraesCS6A01G202400 chr2B 87.449 1227 107 18 1 1200 491569441 491568235 0.000000e+00 1369.0
8 TraesCS6A01G202400 chr2B 98.193 166 3 0 1249 1414 576787038 576787203 1.640000e-74 291.0
9 TraesCS6A01G202400 chr7A 92.565 1910 86 16 2808 4673 287637877 287635980 0.000000e+00 2689.0
10 TraesCS6A01G202400 chr7A 93.443 1281 74 2 1417 2689 287639350 287638072 0.000000e+00 1892.0
11 TraesCS6A01G202400 chr7A 89.761 586 42 7 615 1200 287639910 287639343 0.000000e+00 734.0
12 TraesCS6A01G202400 chr7A 87.097 558 62 10 1 558 287640485 287639938 1.430000e-174 623.0
13 TraesCS6A01G202400 chr7A 78.017 837 138 21 1896 2689 188027503 188028336 7.030000e-133 484.0
14 TraesCS6A01G202400 chr7A 91.667 348 28 1 2688 3035 266647261 266646915 9.090000e-132 481.0
15 TraesCS6A01G202400 chr5B 90.768 2058 111 28 2667 4673 360596868 360598897 0.000000e+00 2675.0
16 TraesCS6A01G202400 chr5B 90.718 1282 85 17 1416 2689 360595602 360596857 0.000000e+00 1677.0
17 TraesCS6A01G202400 chr5B 87.418 1224 109 25 1 1197 360594402 360595607 0.000000e+00 1365.0
18 TraesCS6A01G202400 chr5B 99.375 160 1 0 1249 1408 75535608 75535767 1.640000e-74 291.0
19 TraesCS6A01G202400 chr5B 89.103 156 12 4 922 1074 117937018 117937171 6.170000e-44 189.0
20 TraesCS6A01G202400 chr5B 90.083 121 11 1 653 772 415050338 415050458 6.260000e-34 156.0
21 TraesCS6A01G202400 chr5B 100.000 28 0 0 1194 1221 138775731 138775704 8.000000e-03 52.8
22 TraesCS6A01G202400 chr5B 100.000 28 0 0 1194 1221 485910001 485909974 8.000000e-03 52.8
23 TraesCS6A01G202400 chr1A 94.424 1596 64 12 2808 4386 186717097 186715510 0.000000e+00 2431.0
24 TraesCS6A01G202400 chr1A 94.362 1277 66 2 1417 2689 186718566 186717292 0.000000e+00 1954.0
25 TraesCS6A01G202400 chr1A 89.779 587 38 9 615 1200 186719124 186718559 0.000000e+00 732.0
26 TraesCS6A01G202400 chr1A 88.530 558 54 10 1 558 186719699 186719152 0.000000e+00 667.0
27 TraesCS6A01G202400 chr1A 99.371 159 1 0 1249 1407 580496656 580496814 5.920000e-74 289.0
28 TraesCS6A01G202400 chr2A 91.124 1611 92 27 3098 4673 385902123 385903717 0.000000e+00 2135.0
29 TraesCS6A01G202400 chr2A 95.632 435 18 1 2668 3102 385698978 385699411 0.000000e+00 697.0
30 TraesCS6A01G202400 chr2A 98.773 163 1 1 1250 1412 739277530 739277369 5.920000e-74 289.0
31 TraesCS6A01G202400 chr2A 81.349 252 7 9 4450 4673 192623392 192623631 8.040000e-38 169.0
32 TraesCS6A01G202400 chr2A 96.875 32 0 1 1194 1225 63822602 63822632 8.000000e-03 52.8
33 TraesCS6A01G202400 chr1D 92.201 1013 40 7 3693 4673 456924212 456925217 0.000000e+00 1397.0
34 TraesCS6A01G202400 chr1D 92.833 293 16 1 3098 3385 456923923 456924215 2.010000e-113 420.0
35 TraesCS6A01G202400 chr3A 90.721 1013 49 14 3692 4673 521925268 521924270 0.000000e+00 1308.0
36 TraesCS6A01G202400 chr3A 85.766 822 89 10 1896 2689 207242734 207241913 0.000000e+00 845.0
37 TraesCS6A01G202400 chr3A 93.238 562 31 3 2830 3385 521925824 521925264 0.000000e+00 821.0
38 TraesCS6A01G202400 chr3D 86.114 821 86 11 1896 2689 169887167 169886348 0.000000e+00 859.0
39 TraesCS6A01G202400 chr3D 80.992 363 33 14 706 1040 157825502 157825856 6.000000e-64 255.0
40 TraesCS6A01G202400 chr7D 91.727 411 22 11 548 953 546760731 546760328 1.140000e-155 560.0
41 TraesCS6A01G202400 chr7D 78.349 836 136 21 1896 2689 183321355 183320523 2.510000e-137 499.0
42 TraesCS6A01G202400 chr7D 79.968 634 99 18 3963 4582 84434188 84434807 4.290000e-120 442.0
43 TraesCS6A01G202400 chr7D 82.848 309 38 11 778 1079 436397811 436398111 3.590000e-66 263.0
44 TraesCS6A01G202400 chr7B 78.667 825 133 20 1896 2679 152052584 152051762 4.170000e-140 508.0
45 TraesCS6A01G202400 chr7B 98.182 165 2 1 1249 1413 678620611 678620774 2.130000e-73 287.0
46 TraesCS6A01G202400 chr7B 85.433 254 7 7 4450 4673 140695345 140695092 2.170000e-58 237.0
47 TraesCS6A01G202400 chr3B 91.954 348 27 1 2688 3035 829046681 829047027 1.950000e-133 486.0
48 TraesCS6A01G202400 chr3B 88.125 160 14 4 922 1078 678843644 678843487 7.980000e-43 185.0
49 TraesCS6A01G202400 chr4A 91.667 348 28 1 2688 3035 116142115 116141769 9.090000e-132 481.0
50 TraesCS6A01G202400 chr4A 98.773 163 2 0 1249 1411 37307766 37307928 1.640000e-74 291.0
51 TraesCS6A01G202400 chr4A 100.000 32 0 0 1194 1225 38576835 38576804 5.050000e-05 60.2
52 TraesCS6A01G202400 chr4A 100.000 31 0 0 1194 1224 37307898 37307928 1.820000e-04 58.4
53 TraesCS6A01G202400 chr6B 83.677 533 47 17 632 1139 191363746 191363229 2.550000e-127 466.0
54 TraesCS6A01G202400 chr6B 80.441 363 34 15 706 1040 195459492 195459845 4.670000e-60 243.0
55 TraesCS6A01G202400 chr6B 100.000 28 0 0 1194 1221 530985707 530985680 8.000000e-03 52.8
56 TraesCS6A01G202400 chrUn 98.780 164 2 0 1249 1412 112608263 112608426 4.570000e-75 292.0
57 TraesCS6A01G202400 chrUn 100.000 32 0 0 1194 1225 112608395 112608426 5.050000e-05 60.2
58 TraesCS6A01G202400 chr4B 86.517 267 33 3 1416 1680 321637858 321637593 1.640000e-74 291.0
59 TraesCS6A01G202400 chr4B 98.182 165 3 0 1249 1413 413121356 413121192 5.920000e-74 289.0
60 TraesCS6A01G202400 chr4B 87.500 160 15 4 922 1078 422774629 422774472 3.720000e-41 180.0
61 TraesCS6A01G202400 chr5A 86.792 212 22 3 1419 1629 345359515 345359309 1.010000e-56 231.0
62 TraesCS6A01G202400 chr5A 100.000 28 0 0 1194 1221 502582643 502582670 8.000000e-03 52.8
63 TraesCS6A01G202400 chr4D 84.252 254 10 9 4450 4673 357311235 357311488 2.190000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G202400 chr6A 338190609 338195281 4672 True 4360.800000 8630 98.182000 1 4673 2 chr6A.!!$R1 4672
1 TraesCS6A01G202400 chr1B 282850277 282853953 3676 True 2496.000000 4277 91.455000 680 4582 2 chr1B.!!$R1 3902
2 TraesCS6A01G202400 chr2B 491564953 491569441 4488 True 1967.666667 2785 90.323667 1 4673 3 chr2B.!!$R1 4672
3 TraesCS6A01G202400 chr7A 287635980 287640485 4505 True 1484.500000 2689 90.716500 1 4673 4 chr7A.!!$R2 4672
4 TraesCS6A01G202400 chr7A 188027503 188028336 833 False 484.000000 484 78.017000 1896 2689 1 chr7A.!!$F1 793
5 TraesCS6A01G202400 chr5B 360594402 360598897 4495 False 1905.666667 2675 89.634667 1 4673 3 chr5B.!!$F4 4672
6 TraesCS6A01G202400 chr1A 186715510 186719699 4189 True 1446.000000 2431 91.773750 1 4386 4 chr1A.!!$R1 4385
7 TraesCS6A01G202400 chr2A 385902123 385903717 1594 False 2135.000000 2135 91.124000 3098 4673 1 chr2A.!!$F4 1575
8 TraesCS6A01G202400 chr1D 456923923 456925217 1294 False 908.500000 1397 92.517000 3098 4673 2 chr1D.!!$F1 1575
9 TraesCS6A01G202400 chr3A 521924270 521925824 1554 True 1064.500000 1308 91.979500 2830 4673 2 chr3A.!!$R2 1843
10 TraesCS6A01G202400 chr3A 207241913 207242734 821 True 845.000000 845 85.766000 1896 2689 1 chr3A.!!$R1 793
11 TraesCS6A01G202400 chr3D 169886348 169887167 819 True 859.000000 859 86.114000 1896 2689 1 chr3D.!!$R1 793
12 TraesCS6A01G202400 chr7D 183320523 183321355 832 True 499.000000 499 78.349000 1896 2689 1 chr7D.!!$R1 793
13 TraesCS6A01G202400 chr7D 84434188 84434807 619 False 442.000000 442 79.968000 3963 4582 1 chr7D.!!$F1 619
14 TraesCS6A01G202400 chr7B 152051762 152052584 822 True 508.000000 508 78.667000 1896 2679 1 chr7B.!!$R2 783
15 TraesCS6A01G202400 chr6B 191363229 191363746 517 True 466.000000 466 83.677000 632 1139 1 chr6B.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.033796 CCCTCATTCACCACAGCCAT 60.034 55.0 0.00 0.00 0.00 4.40 F
470 471 0.036022 GCCTTCAGGTGCACTTCTCT 59.964 55.0 17.98 1.64 37.57 3.10 F
1278 1373 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.00 0.00 34.10 3.16 F
1323 1418 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.0 7.38 0.00 33.79 3.16 F
1366 1461 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.0 0.00 0.00 0.00 4.95 F
1385 1480 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.0 0.00 0.00 41.52 2.85 F
1395 1490 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.0 0.00 0.00 34.99 4.45 F
3354 3652 0.247814 GATGTCGGATTGCAAGCACG 60.248 55.0 17.68 16.80 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 1399 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.0 40.08 4.58 R
1347 1442 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.0 0.00 1.28 R
2945 3218 0.173255 CGCAATCCAACCATTCCCAC 59.827 55.000 0.00 0.0 0.00 4.61 R
3105 3397 1.760192 CTGCTGGAATCCTCTTTGGG 58.240 55.000 0.00 0.0 36.20 4.12 R
3336 3634 0.955428 ACGTGCTTGCAATCCGACAT 60.955 50.000 16.32 0.0 0.00 3.06 R
3354 3652 1.338020 GCCACATAAGCAATGCCCTAC 59.662 52.381 0.00 0.0 39.39 3.18 R
3454 3752 8.884323 ACCATCTAGCATCATCTAGGATTTTAA 58.116 33.333 0.00 0.0 37.30 1.52 R
4288 4619 4.569719 ACATGTTTCCTTACCTGTAGGG 57.430 45.455 2.53 0.0 40.27 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.644606 CCTCTGCCAGCACACCCT 61.645 66.667 0.00 0.00 0.00 4.34
97 98 0.172352 GCCACACTTCTCTCTCCTCG 59.828 60.000 0.00 0.00 0.00 4.63
109 110 2.021457 CTCTCCTCGGTTCTCTCTTCC 58.979 57.143 0.00 0.00 0.00 3.46
129 130 0.033796 CCCTCATTCACCACAGCCAT 60.034 55.000 0.00 0.00 0.00 4.40
143 144 2.761465 GCCATAGCCCCAGGAGCTT 61.761 63.158 0.00 0.00 41.83 3.74
157 158 2.159819 GAGCTTCGCAGTCCCTGTCA 62.160 60.000 0.00 0.00 33.43 3.58
177 178 2.275715 AGGAGATCCATGGCCTCCCA 62.276 60.000 32.22 9.66 45.77 4.37
200 201 3.023949 GCTCATCTGCCCAGGTCGT 62.024 63.158 0.00 0.00 0.00 4.34
300 301 1.079543 CAGGGAGTCGTCTTGGCTG 60.080 63.158 0.00 0.00 0.00 4.85
419 420 0.104855 GTGCATGACCTCGCATCCTA 59.895 55.000 0.00 0.00 40.89 2.94
430 431 2.176273 GCATCCTAGGTGCGTGCTG 61.176 63.158 17.01 4.17 32.29 4.41
465 466 3.560251 ACGGCCTTCAGGTGCACT 61.560 61.111 17.98 0.00 37.57 4.40
466 467 2.281761 CGGCCTTCAGGTGCACTT 60.282 61.111 17.98 6.12 37.57 3.16
467 468 2.328099 CGGCCTTCAGGTGCACTTC 61.328 63.158 17.98 0.06 37.57 3.01
469 470 0.957888 GGCCTTCAGGTGCACTTCTC 60.958 60.000 17.98 0.00 37.57 2.87
470 471 0.036022 GCCTTCAGGTGCACTTCTCT 59.964 55.000 17.98 1.64 37.57 3.10
471 472 1.943507 GCCTTCAGGTGCACTTCTCTC 60.944 57.143 17.98 0.00 37.57 3.20
474 475 2.300956 TCAGGTGCACTTCTCTCTCT 57.699 50.000 17.98 0.00 0.00 3.10
476 477 2.170166 CAGGTGCACTTCTCTCTCTCT 58.830 52.381 17.98 0.00 0.00 3.10
477 478 2.164219 CAGGTGCACTTCTCTCTCTCTC 59.836 54.545 17.98 0.00 0.00 3.20
478 479 2.041620 AGGTGCACTTCTCTCTCTCTCT 59.958 50.000 17.98 0.00 0.00 3.10
480 481 3.347216 GTGCACTTCTCTCTCTCTCTCT 58.653 50.000 10.32 0.00 0.00 3.10
486 495 5.128499 CACTTCTCTCTCTCTCTCTCTCTCT 59.872 48.000 0.00 0.00 0.00 3.10
488 497 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
490 499 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
531 540 3.440267 GTTGCAAATGCGAGCACG 58.560 55.556 0.00 0.00 45.83 5.34
579 621 3.763902 CAGTATGTGTGTTCGAGAGAGG 58.236 50.000 0.00 0.00 43.69 3.69
582 624 0.469331 TGTGTGTTCGAGAGAGGGGT 60.469 55.000 0.00 0.00 43.69 4.95
583 625 0.038159 GTGTGTTCGAGAGAGGGGTG 60.038 60.000 0.00 0.00 43.69 4.61
584 626 1.185618 TGTGTTCGAGAGAGGGGTGG 61.186 60.000 0.00 0.00 43.69 4.61
585 627 0.898789 GTGTTCGAGAGAGGGGTGGA 60.899 60.000 0.00 0.00 43.69 4.02
586 628 0.178944 TGTTCGAGAGAGGGGTGGAA 60.179 55.000 0.00 0.00 43.69 3.53
589 631 1.267121 TCGAGAGAGGGGTGGAAAAG 58.733 55.000 0.00 0.00 34.84 2.27
599 643 1.545651 GGGTGGAAAAGAGGGTGACTG 60.546 57.143 0.00 0.00 0.00 3.51
607 651 4.576330 AAAGAGGGTGACTGGAATAAGG 57.424 45.455 0.00 0.00 0.00 2.69
630 674 8.164057 AGGGGAGAAGAAAGTTATTAGTTGAT 57.836 34.615 0.00 0.00 0.00 2.57
682 738 6.801862 GCCATGTTATACTTTCAGTGTGTTTC 59.198 38.462 0.00 0.00 0.00 2.78
731 787 8.822805 AGAGTAAACTAAACTGGATCCACATAA 58.177 33.333 11.44 0.00 0.00 1.90
765 821 6.095440 GCTCCCTTGAAAGCTAATGTATTTGA 59.905 38.462 0.00 0.00 35.60 2.69
769 826 6.378280 CCTTGAAAGCTAATGTATTTGACCCT 59.622 38.462 0.00 0.00 0.00 4.34
817 896 3.181516 GCTTTCTTATGCTTGAGTGGTCG 60.182 47.826 0.00 0.00 0.00 4.79
891 979 7.148755 GGACAAGATAAATTGTGTTGCATTGTC 60.149 37.037 10.87 10.87 43.32 3.18
892 980 7.436118 ACAAGATAAATTGTGTTGCATTGTCT 58.564 30.769 0.00 0.00 41.76 3.41
893 981 8.575589 ACAAGATAAATTGTGTTGCATTGTCTA 58.424 29.630 0.00 0.00 41.76 2.59
894 982 8.853345 CAAGATAAATTGTGTTGCATTGTCTAC 58.147 33.333 0.00 0.00 0.00 2.59
895 983 8.340618 AGATAAATTGTGTTGCATTGTCTACT 57.659 30.769 0.00 0.00 0.00 2.57
896 984 8.454106 AGATAAATTGTGTTGCATTGTCTACTC 58.546 33.333 0.00 0.00 0.00 2.59
897 985 5.376854 AATTGTGTTGCATTGTCTACTCC 57.623 39.130 0.00 0.00 0.00 3.85
898 986 2.778299 TGTGTTGCATTGTCTACTCCC 58.222 47.619 0.00 0.00 0.00 4.30
906 997 2.842645 TTGTCTACTCCCCTACTCCC 57.157 55.000 0.00 0.00 0.00 4.30
929 1020 5.361857 CCCTATTGATGTGGCTCTTGATTTT 59.638 40.000 0.00 0.00 0.00 1.82
939 1030 3.509184 GGCTCTTGATTTTTGAAGCTCCT 59.491 43.478 0.00 0.00 0.00 3.69
973 1067 2.673775 TGTCTTGGGCTTCATTGGAA 57.326 45.000 0.00 0.00 0.00 3.53
1082 1176 6.150976 TGAACTATGTTAATTGGCTGTCCTTG 59.849 38.462 0.00 0.00 0.00 3.61
1109 1203 3.181493 GCAGTGTAGATTGGCATTGAAGG 60.181 47.826 0.00 0.00 0.00 3.46
1110 1204 4.264253 CAGTGTAGATTGGCATTGAAGGA 58.736 43.478 0.00 0.00 0.00 3.36
1113 1207 4.037208 GTGTAGATTGGCATTGAAGGATGG 59.963 45.833 0.00 0.00 0.00 3.51
1205 1300 8.792830 TTTTTCTATAACTGCTTCTATGCACT 57.207 30.769 0.00 0.00 38.12 4.40
1206 1301 7.776933 TTTCTATAACTGCTTCTATGCACTG 57.223 36.000 0.00 0.00 38.12 3.66
1207 1302 5.847304 TCTATAACTGCTTCTATGCACTGG 58.153 41.667 0.00 0.00 38.12 4.00
1208 1303 2.119801 AACTGCTTCTATGCACTGGG 57.880 50.000 0.00 0.00 38.12 4.45
1209 1304 0.987294 ACTGCTTCTATGCACTGGGT 59.013 50.000 0.00 0.00 38.12 4.51
1210 1305 1.065854 ACTGCTTCTATGCACTGGGTC 60.066 52.381 0.00 0.00 38.12 4.46
1211 1306 1.209019 CTGCTTCTATGCACTGGGTCT 59.791 52.381 0.00 0.00 38.12 3.85
1212 1307 1.065926 TGCTTCTATGCACTGGGTCTG 60.066 52.381 0.00 0.00 38.12 3.51
1213 1308 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
1214 1309 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
1215 1310 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
1216 1311 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
1217 1312 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
1218 1313 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
1219 1314 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
1220 1315 1.239347 GCACTGGGTCTGTCCTTTTC 58.761 55.000 0.00 0.00 36.25 2.29
1221 1316 1.897560 CACTGGGTCTGTCCTTTTCC 58.102 55.000 0.00 0.00 36.25 3.13
1222 1317 1.421646 CACTGGGTCTGTCCTTTTCCT 59.578 52.381 0.00 0.00 36.25 3.36
1223 1318 2.136026 ACTGGGTCTGTCCTTTTCCTT 58.864 47.619 0.00 0.00 36.25 3.36
1224 1319 2.514160 ACTGGGTCTGTCCTTTTCCTTT 59.486 45.455 0.00 0.00 36.25 3.11
1225 1320 3.052869 ACTGGGTCTGTCCTTTTCCTTTT 60.053 43.478 0.00 0.00 36.25 2.27
1226 1321 3.960755 CTGGGTCTGTCCTTTTCCTTTTT 59.039 43.478 0.00 0.00 36.25 1.94
1227 1322 3.958147 TGGGTCTGTCCTTTTCCTTTTTC 59.042 43.478 0.00 0.00 36.25 2.29
1228 1323 3.321111 GGGTCTGTCCTTTTCCTTTTTCC 59.679 47.826 0.00 0.00 36.25 3.13
1229 1324 4.215908 GGTCTGTCCTTTTCCTTTTTCCT 58.784 43.478 0.00 0.00 0.00 3.36
1230 1325 4.038042 GGTCTGTCCTTTTCCTTTTTCCTG 59.962 45.833 0.00 0.00 0.00 3.86
1231 1326 3.636764 TCTGTCCTTTTCCTTTTTCCTGC 59.363 43.478 0.00 0.00 0.00 4.85
1232 1327 3.638627 CTGTCCTTTTCCTTTTTCCTGCT 59.361 43.478 0.00 0.00 0.00 4.24
1233 1328 4.030216 TGTCCTTTTCCTTTTTCCTGCTT 58.970 39.130 0.00 0.00 0.00 3.91
1234 1329 5.205056 TGTCCTTTTCCTTTTTCCTGCTTA 58.795 37.500 0.00 0.00 0.00 3.09
1235 1330 5.838521 TGTCCTTTTCCTTTTTCCTGCTTAT 59.161 36.000 0.00 0.00 0.00 1.73
1236 1331 7.007723 TGTCCTTTTCCTTTTTCCTGCTTATA 58.992 34.615 0.00 0.00 0.00 0.98
1237 1332 7.039993 TGTCCTTTTCCTTTTTCCTGCTTATAC 60.040 37.037 0.00 0.00 0.00 1.47
1238 1333 7.007723 TCCTTTTCCTTTTTCCTGCTTATACA 58.992 34.615 0.00 0.00 0.00 2.29
1239 1334 7.176690 TCCTTTTCCTTTTTCCTGCTTATACAG 59.823 37.037 0.00 0.00 37.42 2.74
1240 1335 7.176690 CCTTTTCCTTTTTCCTGCTTATACAGA 59.823 37.037 0.00 0.00 40.25 3.41
1241 1336 8.650143 TTTTCCTTTTTCCTGCTTATACAGAT 57.350 30.769 0.00 0.00 40.25 2.90
1242 1337 7.630242 TTCCTTTTTCCTGCTTATACAGATG 57.370 36.000 0.00 0.00 40.25 2.90
1243 1338 6.721318 TCCTTTTTCCTGCTTATACAGATGT 58.279 36.000 0.00 0.00 40.25 3.06
1244 1339 7.175104 TCCTTTTTCCTGCTTATACAGATGTT 58.825 34.615 0.00 0.00 40.25 2.71
1245 1340 7.669722 TCCTTTTTCCTGCTTATACAGATGTTT 59.330 33.333 0.00 0.00 40.25 2.83
1246 1341 8.956426 CCTTTTTCCTGCTTATACAGATGTTTA 58.044 33.333 0.00 0.00 40.25 2.01
1249 1344 7.859325 TTCCTGCTTATACAGATGTTTAACC 57.141 36.000 0.00 0.00 40.25 2.85
1250 1345 7.195374 TCCTGCTTATACAGATGTTTAACCT 57.805 36.000 0.00 0.00 40.25 3.50
1251 1346 7.047891 TCCTGCTTATACAGATGTTTAACCTG 58.952 38.462 0.00 0.00 40.25 4.00
1252 1347 6.260936 CCTGCTTATACAGATGTTTAACCTGG 59.739 42.308 6.38 0.00 40.25 4.45
1253 1348 5.588648 TGCTTATACAGATGTTTAACCTGGC 59.411 40.000 0.00 0.00 32.52 4.85
1254 1349 5.277345 GCTTATACAGATGTTTAACCTGGCG 60.277 44.000 0.00 0.00 32.52 5.69
1255 1350 1.165270 ACAGATGTTTAACCTGGCGC 58.835 50.000 0.00 0.00 32.52 6.53
1256 1351 1.164411 CAGATGTTTAACCTGGCGCA 58.836 50.000 10.83 0.00 0.00 6.09
1257 1352 1.131126 CAGATGTTTAACCTGGCGCAG 59.869 52.381 10.83 4.65 0.00 5.18
1258 1353 1.165270 GATGTTTAACCTGGCGCAGT 58.835 50.000 10.83 0.00 0.00 4.40
1259 1354 0.881118 ATGTTTAACCTGGCGCAGTG 59.119 50.000 10.83 0.00 0.00 3.66
1260 1355 1.169661 TGTTTAACCTGGCGCAGTGG 61.170 55.000 10.83 10.54 0.00 4.00
1261 1356 1.149627 TTTAACCTGGCGCAGTGGT 59.850 52.632 10.83 11.28 35.29 4.16
1262 1357 1.169661 TTTAACCTGGCGCAGTGGTG 61.170 55.000 16.78 0.00 33.89 4.17
1263 1358 2.046009 TTAACCTGGCGCAGTGGTGA 62.046 55.000 16.78 8.51 33.89 4.02
1264 1359 2.046009 TAACCTGGCGCAGTGGTGAA 62.046 55.000 16.78 7.64 33.89 3.18
1265 1360 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
1266 1361 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
1267 1362 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
1268 1363 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
1269 1364 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
1270 1365 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
1271 1366 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
1272 1367 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
1273 1368 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
1274 1369 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
1275 1370 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
1276 1371 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
1277 1372 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
1278 1373 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
1279 1374 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
1280 1375 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
1281 1376 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
1282 1377 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
1283 1378 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
1284 1379 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
1285 1380 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
1286 1381 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
1287 1382 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
1288 1383 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
1289 1384 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
1290 1385 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
1291 1386 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
1292 1387 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
1293 1388 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
1294 1389 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
1295 1390 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
1296 1391 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
1297 1392 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
1298 1393 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
1299 1394 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
1300 1395 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
1301 1396 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
1302 1397 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
1313 1408 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
1314 1409 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
1315 1410 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
1316 1411 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
1317 1412 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
1318 1413 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
1319 1414 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
1320 1415 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
1321 1416 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
1322 1417 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
1323 1418 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
1324 1419 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
1325 1420 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
1326 1421 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
1336 1431 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
1337 1432 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
1338 1433 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
1339 1434 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
1340 1435 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
1341 1436 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
1342 1437 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
1343 1438 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
1344 1439 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
1345 1440 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
1346 1441 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
1347 1442 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
1348 1443 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
1349 1444 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
1350 1445 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
1351 1446 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
1352 1447 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
1353 1448 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
1354 1449 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
1355 1450 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
1356 1451 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
1357 1452 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
1358 1453 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
1359 1454 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
1360 1455 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
1361 1456 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
1362 1457 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
1363 1458 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
1364 1459 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
1365 1460 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
1366 1461 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
1367 1462 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
1368 1463 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
1370 1465 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
1371 1466 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
1372 1467 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
1373 1468 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
1374 1469 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
1375 1470 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
1376 1471 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
1383 1478 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
1384 1479 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
1385 1480 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
1386 1481 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
1387 1482 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
1388 1483 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
1389 1484 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
1390 1485 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
1391 1486 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
1392 1487 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
1393 1488 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
1394 1489 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
1395 1490 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
1396 1491 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
1397 1492 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
1398 1493 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
1399 1494 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
1400 1495 1.661341 CTTCTATGCACTGGGTCTGC 58.339 55.000 0.00 0.00 35.03 4.26
1401 1496 0.253044 TTCTATGCACTGGGTCTGCC 59.747 55.000 0.00 0.00 33.36 4.85
1412 1507 3.457560 GGTCTGCCCTTTCCCTTTT 57.542 52.632 0.00 0.00 0.00 2.27
1413 1508 1.717032 GGTCTGCCCTTTCCCTTTTT 58.283 50.000 0.00 0.00 0.00 1.94
1414 1509 1.618837 GGTCTGCCCTTTCCCTTTTTC 59.381 52.381 0.00 0.00 0.00 2.29
1597 1701 5.215252 TCTTCACTGGTCTGTTTTAGAGG 57.785 43.478 0.00 0.00 35.70 3.69
1664 1768 4.335416 TGTTTTCCCTGGTCATCTTGATC 58.665 43.478 0.00 0.00 0.00 2.92
1709 1813 2.019249 CATGGTGGGTCATGTTAGCAG 58.981 52.381 0.00 0.00 39.56 4.24
1783 1891 6.418057 TCACCACTATGCATGTGTATATGA 57.582 37.500 20.49 16.29 33.92 2.15
1797 1905 6.288294 TGTGTATATGATGTTGGCCTAACTC 58.712 40.000 3.32 7.28 40.05 3.01
1889 1997 6.538945 TGAGGTTTGGCTTTAAAAAGAAGT 57.461 33.333 6.64 0.00 38.28 3.01
1912 2020 7.166167 AGTTATTTCTAACGGAAGGTCAATGT 58.834 34.615 0.00 0.00 41.77 2.71
1957 2065 9.193806 ACATTTTATTTGGAGCTTATCTGTGAT 57.806 29.630 0.00 0.00 0.00 3.06
2020 2129 3.447586 TCTTCCTGTCGGTTCTCTTATGG 59.552 47.826 0.00 0.00 0.00 2.74
2073 2212 1.673767 ATCAGGAACCATGGTGTCCT 58.326 50.000 28.80 28.80 0.00 3.85
2087 2226 2.234908 GGTGTCCTACTGCACTTGATCT 59.765 50.000 0.00 0.00 36.03 2.75
2145 2284 5.964758 TCATGTTTCAGATTATTTGCACCC 58.035 37.500 0.00 0.00 0.00 4.61
2154 2293 4.706962 AGATTATTTGCACCCCAGAAAGAC 59.293 41.667 0.00 0.00 0.00 3.01
2192 2331 3.194755 TGGACGCTTTCTAGATGCTACAA 59.805 43.478 13.87 0.00 0.00 2.41
2194 2333 3.179830 ACGCTTTCTAGATGCTACAACG 58.820 45.455 13.87 5.40 0.00 4.10
2230 2370 8.970691 ATGTGTGAGTTATTTAATTTCACTGC 57.029 30.769 13.74 9.51 0.00 4.40
2365 2516 0.901124 TGCTTTGTGGGCACTTGTTT 59.099 45.000 0.00 0.00 34.56 2.83
2413 2564 1.516169 GCGCCAAAATACTTGCCCG 60.516 57.895 0.00 0.00 0.00 6.13
2518 2671 3.426963 GGTGAGCTTCGTTTTGTTGTTCA 60.427 43.478 0.00 0.00 0.00 3.18
2564 2718 8.696374 TCTACTTAACCATTTCTATCAGTGAGG 58.304 37.037 0.00 0.00 0.00 3.86
2701 2889 4.322650 GCCCAACAAAATAGGCAATCTTCA 60.323 41.667 0.00 0.00 45.07 3.02
2707 2895 8.991026 CAACAAAATAGGCAATCTTCATTGAAA 58.009 29.630 0.01 0.00 41.97 2.69
2828 3100 1.202639 ACCTTGCAAGTGTCGTGATGA 60.203 47.619 24.35 0.00 0.00 2.92
2842 3114 8.306761 AGTGTCGTGATGATGCATAGATATTTA 58.693 33.333 0.00 0.00 0.00 1.40
2922 3194 6.811954 AGAACTAGCTCTCCTTTAGTAATGC 58.188 40.000 0.00 0.00 0.00 3.56
2931 3204 7.334671 GCTCTCCTTTAGTAATGCAGTACTTTT 59.665 37.037 29.53 10.64 35.85 2.27
2957 3248 5.805728 ACTAGACTAAAGTGGGAATGGTTG 58.194 41.667 0.00 0.00 0.00 3.77
3081 3373 8.777865 TTGCTATGCCAGTCATATAAGTTATC 57.222 34.615 0.00 0.00 37.07 1.75
3105 3397 9.614792 ATCTATTTTCTACAGGTTGTTACATCC 57.385 33.333 4.38 4.38 0.00 3.51
3220 3517 4.641989 AGTGGACTTCATTATGATTGGTGC 59.358 41.667 0.00 2.47 0.00 5.01
3336 3634 4.711355 GGAAGAATGGGAAAATCACATGGA 59.289 41.667 0.00 0.00 40.14 3.41
3354 3652 0.247814 GATGTCGGATTGCAAGCACG 60.248 55.000 17.68 16.80 0.00 5.34
3392 3690 4.023878 TGTGGCGTACAGTTCATAAAAACC 60.024 41.667 0.00 0.00 33.42 3.27
3454 3752 6.156602 TGTTAGACTACTAGAGCTAGAGGTGT 59.843 42.308 11.28 9.46 36.97 4.16
3635 3953 2.088423 CTCGCTCAGGTCTTACTCTGT 58.912 52.381 0.00 0.00 33.13 3.41
3725 4044 1.771255 AGAAGGTGCTCTTTGGACACT 59.229 47.619 0.00 0.00 38.87 3.55
3742 4061 4.322801 GGACACTATGGGTATGGCTACATC 60.323 50.000 0.00 0.00 38.53 3.06
3781 4100 0.179103 CGGCCATTTCAATTCAGCCC 60.179 55.000 2.24 0.00 37.07 5.19
3782 4101 0.903942 GGCCATTTCAATTCAGCCCA 59.096 50.000 0.00 0.00 34.23 5.36
3940 4262 5.906113 TGCCTGTACACTTCTTTTTGAAA 57.094 34.783 0.00 0.00 33.79 2.69
3941 4263 5.646606 TGCCTGTACACTTCTTTTTGAAAC 58.353 37.500 0.00 0.00 33.79 2.78
4040 4363 7.001073 GCCTAGGATTCCTATTTTGACTGATT 58.999 38.462 14.75 0.00 35.36 2.57
4056 4379 6.401394 TGACTGATTTGAGTATCTCTTGGTG 58.599 40.000 0.00 0.00 34.92 4.17
4065 4388 4.678256 AGTATCTCTTGGTGAGTCCTCAA 58.322 43.478 0.00 0.00 41.85 3.02
4111 4439 1.748493 TGAAAACGCTGGCAAAACTCT 59.252 42.857 0.00 0.00 0.00 3.24
4124 4454 6.582636 TGGCAAAACTCTATGTGGTCTATAG 58.417 40.000 0.00 0.00 0.00 1.31
4126 4456 7.071196 TGGCAAAACTCTATGTGGTCTATAGAT 59.929 37.037 5.57 0.00 36.75 1.98
4534 4870 6.980397 AGTTTGCTTTCAGTTCTGGTTAAATG 59.020 34.615 0.00 0.00 0.00 2.32
4626 5012 4.311816 ACATGTTTTCAGTTCAGCAAGG 57.688 40.909 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.285962 AGGCTAGGGTTCATGCAATGT 59.714 47.619 0.00 0.00 46.80 2.71
11 12 0.255890 GGAGGCTAGGGTTCATGCAA 59.744 55.000 0.00 0.00 0.00 4.08
51 52 2.043852 GGAGCGAGGGAGGAGTGA 60.044 66.667 0.00 0.00 0.00 3.41
85 86 2.574369 AGAGAGAACCGAGGAGAGAGAA 59.426 50.000 0.00 0.00 0.00 2.87
97 98 1.886422 ATGAGGGGGAAGAGAGAACC 58.114 55.000 0.00 0.00 0.00 3.62
109 110 1.379044 GGCTGTGGTGAATGAGGGG 60.379 63.158 0.00 0.00 0.00 4.79
147 148 1.079490 TGGATCTCCTTGACAGGGACT 59.921 52.381 1.35 0.00 41.25 3.85
157 158 1.064824 GGGAGGCCATGGATCTCCTT 61.065 60.000 34.15 11.40 44.72 3.36
177 178 1.302285 CTGGGCAGATGAGCACCTT 59.698 57.895 0.00 0.00 37.02 3.50
242 243 1.682684 GTTGAGCTCCTCCTCCCGA 60.683 63.158 12.15 0.00 0.00 5.14
362 363 4.767255 CACCAGCTGAGGCCGTCC 62.767 72.222 17.39 0.00 39.73 4.79
419 420 4.941609 CTAATCCAGCACGCACCT 57.058 55.556 0.00 0.00 0.00 4.00
430 431 1.201343 GTGAAGACGCGAGCTAATCC 58.799 55.000 15.93 1.33 0.00 3.01
465 466 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
466 467 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
467 468 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
469 470 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
470 471 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
471 472 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
474 475 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
476 477 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
477 478 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
478 479 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
480 481 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
486 495 2.435805 GGCAGAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
488 497 2.481441 AGGCAGAGAGAGAGAGAGAGA 58.519 52.381 0.00 0.00 0.00 3.10
490 499 3.010027 TCAAAGGCAGAGAGAGAGAGAGA 59.990 47.826 0.00 0.00 0.00 3.10
531 540 7.538575 TCCTTGAGCATTTTTACAAATAGCTC 58.461 34.615 20.25 20.25 44.10 4.09
579 621 0.771755 AGTCACCCTCTTTTCCACCC 59.228 55.000 0.00 0.00 0.00 4.61
582 624 1.814429 TCCAGTCACCCTCTTTTCCA 58.186 50.000 0.00 0.00 0.00 3.53
583 625 2.951229 TTCCAGTCACCCTCTTTTCC 57.049 50.000 0.00 0.00 0.00 3.13
584 626 4.944317 CCTTATTCCAGTCACCCTCTTTTC 59.056 45.833 0.00 0.00 0.00 2.29
585 627 4.263949 CCCTTATTCCAGTCACCCTCTTTT 60.264 45.833 0.00 0.00 0.00 2.27
586 628 3.267031 CCCTTATTCCAGTCACCCTCTTT 59.733 47.826 0.00 0.00 0.00 2.52
589 631 1.490910 CCCCTTATTCCAGTCACCCTC 59.509 57.143 0.00 0.00 0.00 4.30
599 643 9.562408 CTAATAACTTTCTTCTCCCCTTATTCC 57.438 37.037 0.00 0.00 0.00 3.01
682 738 9.903682 CTCTAATTATATGCAAATGGAACCAAG 57.096 33.333 0.00 0.00 0.00 3.61
716 772 6.078456 TGGAGAAATTATGTGGATCCAGTT 57.922 37.500 16.81 8.21 31.89 3.16
731 787 3.694926 CTTTCAAGGGAGCTGGAGAAAT 58.305 45.455 0.00 0.00 0.00 2.17
765 821 5.838521 ACAAATTGACAGTAAAATGGAGGGT 59.161 36.000 0.00 0.00 0.00 4.34
817 896 6.934048 AGCTGCTCAAACCTAAAATCTATC 57.066 37.500 0.00 0.00 0.00 2.08
891 979 3.401683 TCAATAGGGGAGTAGGGGAGTAG 59.598 52.174 0.00 0.00 0.00 2.57
892 980 3.419974 TCAATAGGGGAGTAGGGGAGTA 58.580 50.000 0.00 0.00 0.00 2.59
893 981 2.233178 TCAATAGGGGAGTAGGGGAGT 58.767 52.381 0.00 0.00 0.00 3.85
894 982 3.177228 CATCAATAGGGGAGTAGGGGAG 58.823 54.545 0.00 0.00 0.00 4.30
895 983 2.527057 ACATCAATAGGGGAGTAGGGGA 59.473 50.000 0.00 0.00 0.00 4.81
896 984 2.639839 CACATCAATAGGGGAGTAGGGG 59.360 54.545 0.00 0.00 0.00 4.79
897 985 2.639839 CCACATCAATAGGGGAGTAGGG 59.360 54.545 0.00 0.00 0.00 3.53
898 986 2.039084 GCCACATCAATAGGGGAGTAGG 59.961 54.545 0.00 0.00 0.00 3.18
906 997 6.461110 AAAATCAAGAGCCACATCAATAGG 57.539 37.500 0.00 0.00 0.00 2.57
929 1020 9.784531 CATCTTATTAAATCCTAGGAGCTTCAA 57.215 33.333 18.34 7.03 0.00 2.69
939 1030 8.045720 AGCCCAAGACATCTTATTAAATCCTA 57.954 34.615 0.00 0.00 34.28 2.94
953 1047 2.905415 TCCAATGAAGCCCAAGACAT 57.095 45.000 0.00 0.00 0.00 3.06
973 1067 5.759059 TCATTGCTCCAGGTAGATCATTTT 58.241 37.500 0.00 0.00 0.00 1.82
1029 1123 9.953565 ATGTTTTAGTACCTGCTAACTTAATGA 57.046 29.630 0.00 0.00 31.43 2.57
1040 1134 7.549488 ACATAGTTCAGATGTTTTAGTACCTGC 59.451 37.037 0.00 0.00 33.70 4.85
1082 1176 1.312815 GCCAATCTACACTGCCATCC 58.687 55.000 0.00 0.00 0.00 3.51
1109 1203 1.344114 TGCAAGAAAAAGGCCACCATC 59.656 47.619 5.01 0.00 0.00 3.51
1110 1204 1.070601 GTGCAAGAAAAAGGCCACCAT 59.929 47.619 5.01 0.00 0.00 3.55
1113 1207 0.463620 TGGTGCAAGAAAAAGGCCAC 59.536 50.000 5.01 0.00 0.00 5.01
1191 1286 1.209019 AGACCCAGTGCATAGAAGCAG 59.791 52.381 0.00 0.00 46.69 4.24
1192 1287 1.065926 CAGACCCAGTGCATAGAAGCA 60.066 52.381 0.00 0.00 43.35 3.91
1193 1288 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
1194 1289 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
1195 1290 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
1196 1291 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
1197 1292 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
1198 1293 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
1199 1294 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
1200 1295 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
1201 1296 1.239347 GAAAAGGACAGACCCAGTGC 58.761 55.000 0.00 0.00 40.05 4.40
1202 1297 1.421646 AGGAAAAGGACAGACCCAGTG 59.578 52.381 0.00 0.00 40.05 3.66
1203 1298 1.821088 AGGAAAAGGACAGACCCAGT 58.179 50.000 0.00 0.00 40.05 4.00
1204 1299 2.959465 AAGGAAAAGGACAGACCCAG 57.041 50.000 0.00 0.00 40.05 4.45
1205 1300 3.680777 AAAAGGAAAAGGACAGACCCA 57.319 42.857 0.00 0.00 40.05 4.51
1206 1301 3.321111 GGAAAAAGGAAAAGGACAGACCC 59.679 47.826 0.00 0.00 40.05 4.46
1207 1302 4.038042 CAGGAAAAAGGAAAAGGACAGACC 59.962 45.833 0.00 0.00 39.35 3.85
1208 1303 4.499865 GCAGGAAAAAGGAAAAGGACAGAC 60.500 45.833 0.00 0.00 0.00 3.51
1209 1304 3.636764 GCAGGAAAAAGGAAAAGGACAGA 59.363 43.478 0.00 0.00 0.00 3.41
1210 1305 3.638627 AGCAGGAAAAAGGAAAAGGACAG 59.361 43.478 0.00 0.00 0.00 3.51
1211 1306 3.642141 AGCAGGAAAAAGGAAAAGGACA 58.358 40.909 0.00 0.00 0.00 4.02
1212 1307 4.672587 AAGCAGGAAAAAGGAAAAGGAC 57.327 40.909 0.00 0.00 0.00 3.85
1213 1308 7.007723 TGTATAAGCAGGAAAAAGGAAAAGGA 58.992 34.615 0.00 0.00 0.00 3.36
1214 1309 7.176690 TCTGTATAAGCAGGAAAAAGGAAAAGG 59.823 37.037 0.00 0.00 37.12 3.11
1215 1310 8.110860 TCTGTATAAGCAGGAAAAAGGAAAAG 57.889 34.615 0.00 0.00 37.12 2.27
1216 1311 8.522830 CATCTGTATAAGCAGGAAAAAGGAAAA 58.477 33.333 0.00 0.00 37.12 2.29
1217 1312 7.669722 ACATCTGTATAAGCAGGAAAAAGGAAA 59.330 33.333 0.00 0.00 37.12 3.13
1218 1313 7.175104 ACATCTGTATAAGCAGGAAAAAGGAA 58.825 34.615 0.00 0.00 37.12 3.36
1219 1314 6.721318 ACATCTGTATAAGCAGGAAAAAGGA 58.279 36.000 0.00 0.00 37.12 3.36
1220 1315 7.396540 AACATCTGTATAAGCAGGAAAAAGG 57.603 36.000 0.00 0.00 37.12 3.11
1223 1318 8.736244 GGTTAAACATCTGTATAAGCAGGAAAA 58.264 33.333 0.00 0.00 37.12 2.29
1224 1319 8.107095 AGGTTAAACATCTGTATAAGCAGGAAA 58.893 33.333 0.00 0.00 37.12 3.13
1225 1320 7.552687 CAGGTTAAACATCTGTATAAGCAGGAA 59.447 37.037 0.00 0.00 37.12 3.36
1226 1321 7.047891 CAGGTTAAACATCTGTATAAGCAGGA 58.952 38.462 0.00 0.00 37.12 3.86
1227 1322 6.260936 CCAGGTTAAACATCTGTATAAGCAGG 59.739 42.308 0.00 0.00 37.12 4.85
1228 1323 6.238484 GCCAGGTTAAACATCTGTATAAGCAG 60.238 42.308 0.00 0.00 37.81 4.24
1229 1324 5.588648 GCCAGGTTAAACATCTGTATAAGCA 59.411 40.000 0.00 0.00 0.00 3.91
1230 1325 5.277345 CGCCAGGTTAAACATCTGTATAAGC 60.277 44.000 0.00 0.00 0.00 3.09
1231 1326 5.277345 GCGCCAGGTTAAACATCTGTATAAG 60.277 44.000 0.00 0.00 0.00 1.73
1232 1327 4.573201 GCGCCAGGTTAAACATCTGTATAA 59.427 41.667 0.00 0.00 0.00 0.98
1233 1328 4.124238 GCGCCAGGTTAAACATCTGTATA 58.876 43.478 0.00 0.00 0.00 1.47
1234 1329 2.943033 GCGCCAGGTTAAACATCTGTAT 59.057 45.455 0.00 0.00 0.00 2.29
1235 1330 2.289756 TGCGCCAGGTTAAACATCTGTA 60.290 45.455 4.18 0.00 0.00 2.74
1236 1331 1.165270 GCGCCAGGTTAAACATCTGT 58.835 50.000 0.00 0.00 0.00 3.41
1237 1332 1.131126 CTGCGCCAGGTTAAACATCTG 59.869 52.381 4.18 0.00 0.00 2.90
1238 1333 1.271379 ACTGCGCCAGGTTAAACATCT 60.271 47.619 4.18 0.00 35.51 2.90
1239 1334 1.135689 CACTGCGCCAGGTTAAACATC 60.136 52.381 4.18 0.00 35.51 3.06
1240 1335 0.881118 CACTGCGCCAGGTTAAACAT 59.119 50.000 4.18 0.00 35.51 2.71
1241 1336 1.169661 CCACTGCGCCAGGTTAAACA 61.170 55.000 4.18 0.00 35.51 2.83
1242 1337 1.170290 ACCACTGCGCCAGGTTAAAC 61.170 55.000 4.18 0.00 35.51 2.01
1243 1338 1.149627 ACCACTGCGCCAGGTTAAA 59.850 52.632 4.18 0.00 35.51 1.52
1244 1339 1.599518 CACCACTGCGCCAGGTTAA 60.600 57.895 12.16 0.00 35.51 2.01
1245 1340 2.031919 CACCACTGCGCCAGGTTA 59.968 61.111 12.16 0.00 35.51 2.85
1246 1341 3.414136 TTCACCACTGCGCCAGGTT 62.414 57.895 12.16 0.00 35.51 3.50
1247 1342 3.832237 CTTCACCACTGCGCCAGGT 62.832 63.158 4.18 7.40 35.51 4.00
1248 1343 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
1249 1344 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
1250 1345 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
1251 1346 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
1252 1347 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
1253 1348 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
1254 1349 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
1260 1355 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
1261 1356 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
1262 1357 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
1263 1358 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
1264 1359 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
1265 1360 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
1266 1361 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
1277 1372 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
1278 1373 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
1279 1374 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
1280 1375 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
1281 1376 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
1282 1377 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
1283 1378 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
1284 1379 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
1285 1380 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
1286 1381 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
1295 1390 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
1296 1391 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
1297 1392 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
1298 1393 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
1299 1394 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
1300 1395 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
1301 1396 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
1302 1397 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
1304 1399 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
1305 1400 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
1306 1401 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
1307 1402 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
1318 1413 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
1319 1414 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
1320 1415 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
1321 1416 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
1322 1417 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
1323 1418 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
1324 1419 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
1325 1420 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
1326 1421 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
1327 1422 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
1328 1423 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
1329 1424 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
1330 1425 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
1331 1426 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
1332 1427 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
1333 1428 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
1334 1429 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
1335 1430 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
1336 1431 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
1337 1432 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
1338 1433 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
1339 1434 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
1340 1435 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
1341 1436 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
1342 1437 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
1343 1438 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
1344 1439 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
1345 1440 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
1346 1441 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
1347 1442 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
1348 1443 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
1349 1444 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
1350 1445 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
1351 1446 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
1353 1448 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
1354 1449 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
1355 1450 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
1356 1451 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
1357 1452 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
1358 1453 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
1359 1454 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
1367 1462 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
1368 1463 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
1369 1464 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
1370 1465 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
1371 1466 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
1372 1467 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
1373 1468 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
1374 1469 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
1375 1470 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
1376 1471 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
1377 1472 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
1378 1473 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
1379 1474 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
1380 1475 1.661341 CAGACCCAGTGCATAGAAGC 58.339 55.000 0.00 0.00 0.00 3.86
1381 1476 1.661341 GCAGACCCAGTGCATAGAAG 58.339 55.000 0.00 0.00 40.86 2.85
1382 1477 0.253044 GGCAGACCCAGTGCATAGAA 59.747 55.000 0.00 0.00 43.12 2.10
1383 1478 1.907739 GGCAGACCCAGTGCATAGA 59.092 57.895 0.00 0.00 43.12 1.98
1384 1479 4.547859 GGCAGACCCAGTGCATAG 57.452 61.111 0.00 0.00 43.12 2.23
1394 1489 1.618837 GAAAAAGGGAAAGGGCAGACC 59.381 52.381 0.00 0.00 40.67 3.85
1395 1490 1.618837 GGAAAAAGGGAAAGGGCAGAC 59.381 52.381 0.00 0.00 0.00 3.51
1396 1491 1.503347 AGGAAAAAGGGAAAGGGCAGA 59.497 47.619 0.00 0.00 0.00 4.26
1397 1492 1.620323 CAGGAAAAAGGGAAAGGGCAG 59.380 52.381 0.00 0.00 0.00 4.85
1398 1493 1.715785 CAGGAAAAAGGGAAAGGGCA 58.284 50.000 0.00 0.00 0.00 5.36
1399 1494 0.321671 GCAGGAAAAAGGGAAAGGGC 59.678 55.000 0.00 0.00 0.00 5.19
1400 1495 2.015456 AGCAGGAAAAAGGGAAAGGG 57.985 50.000 0.00 0.00 0.00 3.95
1401 1496 5.714806 TGTATAAGCAGGAAAAAGGGAAAGG 59.285 40.000 0.00 0.00 0.00 3.11
1402 1497 6.659242 TCTGTATAAGCAGGAAAAAGGGAAAG 59.341 38.462 0.00 0.00 37.12 2.62
1403 1498 6.548321 TCTGTATAAGCAGGAAAAAGGGAAA 58.452 36.000 0.00 0.00 37.12 3.13
1404 1499 6.134535 TCTGTATAAGCAGGAAAAAGGGAA 57.865 37.500 0.00 0.00 37.12 3.97
1405 1500 5.772393 TCTGTATAAGCAGGAAAAAGGGA 57.228 39.130 0.00 0.00 37.12 4.20
1406 1501 5.888161 ACATCTGTATAAGCAGGAAAAAGGG 59.112 40.000 0.00 0.00 37.12 3.95
1407 1502 7.396540 AACATCTGTATAAGCAGGAAAAAGG 57.603 36.000 0.00 0.00 37.12 3.11
1597 1701 6.494893 TGTTGTGTAGCTAATCAAACATCC 57.505 37.500 11.68 3.11 0.00 3.51
1664 1768 1.867233 CGGTCACCAACAGAACTGAAG 59.133 52.381 8.87 0.84 0.00 3.02
1709 1813 3.244457 GCACTGGATACCCTTATACCCAC 60.244 52.174 0.00 0.00 0.00 4.61
1783 1891 7.834181 ACAAAATGTATAGAGTTAGGCCAACAT 59.166 33.333 5.01 3.56 39.81 2.71
1797 1905 9.507280 GAATCATCACACCAACAAAATGTATAG 57.493 33.333 0.00 0.00 0.00 1.31
1836 1944 7.564793 TCTAGCACAACAGGACACAATATAAT 58.435 34.615 0.00 0.00 0.00 1.28
1889 1997 7.162761 TCACATTGACCTTCCGTTAGAAATAA 58.837 34.615 0.00 0.00 32.88 1.40
1912 2020 7.759489 AAATGTATACACTGCCTTTTTCTCA 57.241 32.000 7.96 0.00 0.00 3.27
1957 2065 7.770433 AGCATATATAAAGACAAGTGCACAAGA 59.230 33.333 21.04 0.00 34.01 3.02
2020 2129 7.286313 ACAAATCAGATAAGGGGAAAGATCTC 58.714 38.462 0.00 0.00 0.00 2.75
2073 2212 2.564504 AGCTCACAGATCAAGTGCAGTA 59.435 45.455 12.07 0.00 36.93 2.74
2087 2226 1.540267 GAAGGTCTCGTACAGCTCACA 59.460 52.381 0.00 0.00 0.00 3.58
2138 2277 1.064017 AGTTGTCTTTCTGGGGTGCAA 60.064 47.619 0.00 0.00 0.00 4.08
2145 2284 2.930950 TGGTGGAAGTTGTCTTTCTGG 58.069 47.619 0.00 0.00 33.64 3.86
2154 2293 2.162208 CGTCCATTCATGGTGGAAGTTG 59.838 50.000 18.47 8.51 46.67 3.16
2181 2320 2.959030 AGCTCATCCGTTGTAGCATCTA 59.041 45.455 0.00 0.00 37.44 1.98
2192 2331 3.055819 ACTCACACATTAAGCTCATCCGT 60.056 43.478 0.00 0.00 0.00 4.69
2194 2333 7.559590 AATAACTCACACATTAAGCTCATCC 57.440 36.000 0.00 0.00 0.00 3.51
2365 2516 2.038820 TGACCTCAGACAATGCACATGA 59.961 45.455 0.00 0.00 0.00 3.07
2402 2553 4.345257 AGATCTACATGTCGGGCAAGTATT 59.655 41.667 0.00 0.00 31.86 1.89
2413 2564 3.406764 GGCAATGGGAGATCTACATGTC 58.593 50.000 7.40 0.22 0.00 3.06
2467 2619 3.575506 CCAGTTGGGCTTCATGCTA 57.424 52.632 0.00 0.00 42.39 3.49
2478 2630 1.073923 ACCAAGCTAACTCCCAGTTGG 59.926 52.381 0.00 0.00 39.11 3.77
2564 2718 8.603181 CATAAAAACTATTTGCCAATTGTAGCC 58.397 33.333 4.43 0.00 29.40 3.93
2629 2784 3.302347 CTGGACCTGGAGCACCGAC 62.302 68.421 0.00 0.00 39.42 4.79
2644 2799 4.008074 TCTTGCTTGTTACTCCTTCTGG 57.992 45.455 0.00 0.00 0.00 3.86
2842 3114 8.756927 CAGGGTCTGACATTCATATAGATACAT 58.243 37.037 10.38 0.00 32.44 2.29
2931 3204 8.701895 CAACCATTCCCACTTTAGTCTAGTATA 58.298 37.037 0.00 0.00 0.00 1.47
2938 3211 4.028993 TCCAACCATTCCCACTTTAGTC 57.971 45.455 0.00 0.00 0.00 2.59
2942 3215 2.302733 GCAATCCAACCATTCCCACTTT 59.697 45.455 0.00 0.00 0.00 2.66
2945 3218 0.173255 CGCAATCCAACCATTCCCAC 59.827 55.000 0.00 0.00 0.00 4.61
2957 3248 2.297597 ACTGTCCTATAGAGCGCAATCC 59.702 50.000 11.47 0.00 0.00 3.01
3081 3373 7.282450 GGGGATGTAACAACCTGTAGAAAATAG 59.718 40.741 0.00 0.00 0.00 1.73
3105 3397 1.760192 CTGCTGGAATCCTCTTTGGG 58.240 55.000 0.00 0.00 36.20 4.12
3210 3507 2.537633 AGGAATGTGGCACCAATCAT 57.462 45.000 16.26 5.48 0.00 2.45
3218 3515 4.599041 AGCAGTAAATTAGGAATGTGGCA 58.401 39.130 0.00 0.00 0.00 4.92
3220 3517 6.949352 ATGAGCAGTAAATTAGGAATGTGG 57.051 37.500 0.00 0.00 0.00 4.17
3336 3634 0.955428 ACGTGCTTGCAATCCGACAT 60.955 50.000 16.32 0.00 0.00 3.06
3354 3652 1.338020 GCCACATAAGCAATGCCCTAC 59.662 52.381 0.00 0.00 39.39 3.18
3454 3752 8.884323 ACCATCTAGCATCATCTAGGATTTTAA 58.116 33.333 0.00 0.00 37.30 1.52
3725 4044 2.565391 CACGGATGTAGCCATACCCATA 59.435 50.000 0.00 0.00 0.00 2.74
3742 4061 0.527565 CAAATTTCCTCCAGCCACGG 59.472 55.000 0.00 0.00 0.00 4.94
3906 4228 4.283467 AGTGTACAGGCAAGAATGTGTCTA 59.717 41.667 0.00 0.00 34.56 2.59
4288 4619 4.569719 ACATGTTTCCTTACCTGTAGGG 57.430 45.455 2.53 0.00 40.27 3.53
4401 4734 8.156820 CAGTATTTGGGAGATTATGATGGTGTA 58.843 37.037 0.00 0.00 0.00 2.90
4402 4735 7.000472 CAGTATTTGGGAGATTATGATGGTGT 59.000 38.462 0.00 0.00 0.00 4.16
4499 4833 9.289782 AGAACTGAAAGCAAACTCTTATACATT 57.710 29.630 0.00 0.00 37.60 2.71
4534 4870 8.036575 TGGAAATTTGATTGATCATCCAAGTTC 58.963 33.333 7.75 12.59 38.57 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.