Multiple sequence alignment - TraesCS6A01G200300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G200300 chr6A 100.000 5274 0 0 1 5274 322699928 322705201 0.000000e+00 9740.0
1 TraesCS6A01G200300 chr6B 92.354 2982 148 41 1422 4351 348092846 348095799 0.000000e+00 4170.0
2 TraesCS6A01G200300 chr6B 83.707 1025 47 53 499 1417 348091777 348092787 0.000000e+00 857.0
3 TraesCS6A01G200300 chr6B 88.956 498 29 8 1 487 348091237 348091719 4.550000e-165 592.0
4 TraesCS6A01G200300 chr6B 87.336 229 16 9 4356 4582 348095851 348096068 3.150000e-62 250.0
5 TraesCS6A01G200300 chr6B 87.356 87 3 2 5191 5269 348097230 348097316 5.620000e-15 93.5
6 TraesCS6A01G200300 chr6B 87.013 77 9 1 4996 5072 348097107 348097182 9.410000e-13 86.1
7 TraesCS6A01G200300 chr6B 95.000 40 2 0 5185 5224 348095886 348095925 4.410000e-06 63.9
8 TraesCS6A01G200300 chr6D 95.190 1996 77 10 2365 4354 262429502 262427520 0.000000e+00 3136.0
9 TraesCS6A01G200300 chr6D 94.763 802 28 5 1460 2254 262430295 262429501 0.000000e+00 1236.0
10 TraesCS6A01G200300 chr6D 84.584 493 24 21 546 994 262431375 262430891 4.850000e-120 442.0
11 TraesCS6A01G200300 chr6D 89.308 318 16 11 173 487 262431760 262431458 2.980000e-102 383.0
12 TraesCS6A01G200300 chr6D 90.236 297 11 10 1140 1421 262430658 262430365 6.450000e-99 372.0
13 TraesCS6A01G200300 chr6D 98.160 163 3 0 1001 1163 262430840 262430678 8.640000e-73 285.0
14 TraesCS6A01G200300 chr6D 91.011 178 12 2 2 175 262432189 262432012 2.460000e-58 237.0
15 TraesCS6A01G200300 chr6D 92.857 98 4 3 4356 4452 262427472 262427377 7.120000e-29 139.0
16 TraesCS6A01G200300 chr6D 89.320 103 8 3 4482 4582 262427382 262427281 5.540000e-25 126.0
17 TraesCS6A01G200300 chr6D 97.059 34 1 0 5191 5224 262427431 262427398 2.050000e-04 58.4
18 TraesCS6A01G200300 chr1A 92.308 91 5 1 5095 5183 551155101 551155011 1.540000e-25 128.0
19 TraesCS6A01G200300 chr2D 90.323 93 8 1 5094 5185 422085521 422085613 2.580000e-23 121.0
20 TraesCS6A01G200300 chr2D 90.588 85 6 1 5101 5183 331544148 331544232 1.550000e-20 111.0
21 TraesCS6A01G200300 chr7D 88.119 101 8 3 5090 5187 497815012 497815111 3.340000e-22 117.0
22 TraesCS6A01G200300 chr4D 91.667 84 6 1 5101 5183 389092141 389092224 1.200000e-21 115.0
23 TraesCS6A01G200300 chr5D 89.130 92 8 1 5094 5183 250069719 250069628 4.320000e-21 113.0
24 TraesCS6A01G200300 chr2B 89.247 93 7 2 5096 5185 387076278 387076186 4.320000e-21 113.0
25 TraesCS6A01G200300 chr3A 89.011 91 8 2 5095 5183 711130371 711130461 1.550000e-20 111.0
26 TraesCS6A01G200300 chr5B 88.172 93 9 1 5096 5186 278011967 278011875 5.580000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G200300 chr6A 322699928 322705201 5273 False 9740.000000 9740 100.000000 1 5274 1 chr6A.!!$F1 5273
1 TraesCS6A01G200300 chr6B 348091237 348097316 6079 False 873.214286 4170 88.817429 1 5269 7 chr6B.!!$F1 5268
2 TraesCS6A01G200300 chr6D 262427281 262432189 4908 True 641.440000 3136 92.248800 2 5224 10 chr6D.!!$R1 5222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 760 0.540597 GGAAAAGGCAAGCAGGGACT 60.541 55.000 0.0 0.0 43.88 3.85 F
1022 1436 0.165511 CAAGACGAGCAAGCAAGAGC 59.834 55.000 0.0 0.0 42.56 4.09 F
1607 2138 0.610174 TCTGCTCACCTTACCTGCTG 59.390 55.000 0.0 0.0 0.00 4.41 F
1608 2139 1.003355 TGCTCACCTTACCTGCTGC 60.003 57.895 0.0 0.0 0.00 5.25 F
2363 2931 1.079503 GGTTTCTGATCACCAGTCGC 58.920 55.000 0.0 0.0 43.38 5.19 F
3362 3953 1.081376 GCAGCAGCAGAGCAAACAG 60.081 57.895 0.0 0.0 41.58 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 2137 0.101579 TCGACGTCAGTGAAACAGCA 59.898 50.000 17.16 0.00 41.43 4.41 R
2355 2923 0.321671 ACTGCTGTAATGCGACTGGT 59.678 50.000 0.00 0.00 35.36 4.00 R
3321 3912 0.464036 TAATGCTTCGCTGGATCCGT 59.536 50.000 7.39 0.00 0.00 4.69 R
3362 3953 0.793250 GAGCTGTCTCTTGTTTCCGC 59.207 55.000 0.00 0.00 36.42 5.54 R
3937 4528 1.003331 GCGGTCTCTCTAGATGACACG 60.003 57.143 20.49 20.08 33.30 4.49 R
4642 5294 0.171455 GTCTGAAGACGTCGGCTCAT 59.829 55.000 10.46 0.00 35.12 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.695928 GCTATCTAAAAAGATTAGCCGGGG 59.304 45.833 2.18 0.00 0.00 5.73
43 45 0.996583 AGCCGGGGGAAATACTTTGA 59.003 50.000 2.18 0.00 0.00 2.69
47 49 1.681264 CGGGGGAAATACTTTGATGGC 59.319 52.381 0.00 0.00 0.00 4.40
61 63 4.582701 TTGATGGCGAGTTCATTTTGTT 57.417 36.364 0.00 0.00 0.00 2.83
72 74 8.539674 GCGAGTTCATTTTGTTAATTTGTTTCT 58.460 29.630 0.00 0.00 0.00 2.52
78 83 9.974980 TCATTTTGTTAATTTGTTTCTCCTACC 57.025 29.630 0.00 0.00 0.00 3.18
79 84 8.911662 CATTTTGTTAATTTGTTTCTCCTACCG 58.088 33.333 0.00 0.00 0.00 4.02
190 455 3.141398 CATTGACTTGTACTGCAGTGGT 58.859 45.455 29.57 20.24 0.00 4.16
237 503 1.070445 CCAAGGAAAGGCACATGCAAA 59.930 47.619 6.15 0.00 44.36 3.68
301 568 3.814005 ACTTATTACACTGGCTACCCG 57.186 47.619 0.00 0.00 0.00 5.28
323 593 5.346822 CCGTAGAGTATTAAACACACACCAC 59.653 44.000 0.00 0.00 0.00 4.16
324 594 6.154445 CGTAGAGTATTAAACACACACCACT 58.846 40.000 0.00 0.00 0.00 4.00
325 595 7.307694 CGTAGAGTATTAAACACACACCACTA 58.692 38.462 0.00 0.00 0.00 2.74
327 597 7.299246 AGAGTATTAAACACACACCACTACT 57.701 36.000 0.00 0.00 0.00 2.57
328 598 7.376615 AGAGTATTAAACACACACCACTACTC 58.623 38.462 0.00 0.00 35.13 2.59
329 599 7.014905 AGAGTATTAAACACACACCACTACTCA 59.985 37.037 0.00 0.00 36.58 3.41
330 600 7.152645 AGTATTAAACACACACCACTACTCAG 58.847 38.462 0.00 0.00 0.00 3.35
433 703 2.829003 CATGCCAGCCAGAGCCAG 60.829 66.667 0.00 0.00 41.25 4.85
434 704 3.013327 ATGCCAGCCAGAGCCAGA 61.013 61.111 0.00 0.00 41.25 3.86
436 706 4.792804 GCCAGCCAGAGCCAGACC 62.793 72.222 0.00 0.00 41.25 3.85
438 708 2.268280 CAGCCAGAGCCAGACCAG 59.732 66.667 0.00 0.00 41.25 4.00
439 709 2.121385 AGCCAGAGCCAGACCAGA 59.879 61.111 0.00 0.00 41.25 3.86
440 710 2.267324 GCCAGAGCCAGACCAGAC 59.733 66.667 0.00 0.00 0.00 3.51
441 711 2.985456 CCAGAGCCAGACCAGACC 59.015 66.667 0.00 0.00 0.00 3.85
442 712 1.915266 CCAGAGCCAGACCAGACCA 60.915 63.158 0.00 0.00 0.00 4.02
443 713 1.595882 CAGAGCCAGACCAGACCAG 59.404 63.158 0.00 0.00 0.00 4.00
444 714 0.902048 CAGAGCCAGACCAGACCAGA 60.902 60.000 0.00 0.00 0.00 3.86
445 715 0.902516 AGAGCCAGACCAGACCAGAC 60.903 60.000 0.00 0.00 0.00 3.51
487 757 1.228988 AGGGAAAAGGCAAGCAGGG 60.229 57.895 0.00 0.00 0.00 4.45
488 758 1.228862 GGGAAAAGGCAAGCAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
490 760 0.540597 GGAAAAGGCAAGCAGGGACT 60.541 55.000 0.00 0.00 43.88 3.85
549 871 7.696453 ACGTTTGCTGATGTTATTAATACAAGC 59.304 33.333 0.00 5.16 32.57 4.01
634 959 3.636231 CCACTCCAGCACCCGGAA 61.636 66.667 0.73 0.00 30.33 4.30
724 1049 8.133627 AGAATGAAATGGAATCGAATGATGAAC 58.866 33.333 0.00 0.00 34.24 3.18
726 1051 5.651576 TGAAATGGAATCGAATGATGAACCA 59.348 36.000 0.00 0.00 37.45 3.67
782 1108 1.843368 GCCCTAACCACCCCTAAAAC 58.157 55.000 0.00 0.00 0.00 2.43
807 1157 3.790089 GGAAACCTTCTCTTCCTTCCA 57.210 47.619 0.00 0.00 38.48 3.53
830 1180 1.077644 TCTCCGTCTTCCTCCTCGG 60.078 63.158 0.00 0.00 43.65 4.63
847 1204 3.276846 GCCACACCCGACACACAC 61.277 66.667 0.00 0.00 0.00 3.82
849 1206 2.177580 CCACACCCGACACACACAC 61.178 63.158 0.00 0.00 0.00 3.82
962 1332 2.202932 ATCATCACCAGCGCCGTC 60.203 61.111 2.29 0.00 0.00 4.79
994 1364 3.362399 CTCACCTGAGCGCCATCGT 62.362 63.158 2.29 0.00 38.14 3.73
996 1366 1.068083 CACCTGAGCGCCATCGTAT 59.932 57.895 2.29 0.00 38.14 3.06
997 1367 0.941463 CACCTGAGCGCCATCGTATC 60.941 60.000 2.29 0.00 38.14 2.24
1022 1436 0.165511 CAAGACGAGCAAGCAAGAGC 59.834 55.000 0.00 0.00 42.56 4.09
1030 1444 1.349026 AGCAAGCAAGAGCAAGAGGTA 59.651 47.619 0.00 0.00 45.49 3.08
1039 1453 2.774809 AGAGCAAGAGGTAAGGAATCCC 59.225 50.000 0.00 0.00 0.00 3.85
1235 1698 1.266178 TGAAGAAGATCCGGCTGACA 58.734 50.000 0.00 0.00 0.00 3.58
1315 1792 4.608918 TCAAACCTTAATAAACCCTCCCCT 59.391 41.667 0.00 0.00 0.00 4.79
1328 1805 4.154347 CCCCTCGCCTCAGCTCAC 62.154 72.222 0.00 0.00 36.60 3.51
1333 1810 2.164865 CTCGCCTCAGCTCACCAGTT 62.165 60.000 0.00 0.00 36.60 3.16
1337 1814 0.668706 CCTCAGCTCACCAGTTCGTG 60.669 60.000 0.00 0.00 34.93 4.35
1425 1951 1.466167 TCGACGAGGTACTGCAACTAC 59.534 52.381 0.00 0.00 41.55 2.73
1432 1958 4.155462 CGAGGTACTGCAACTACACTAGAA 59.845 45.833 0.00 0.00 41.55 2.10
1434 1960 6.607004 AGGTACTGCAACTACACTAGAATT 57.393 37.500 0.00 0.00 37.18 2.17
1435 1961 7.005709 AGGTACTGCAACTACACTAGAATTT 57.994 36.000 0.00 0.00 37.18 1.82
1437 1963 8.033626 AGGTACTGCAACTACACTAGAATTTAC 58.966 37.037 0.00 0.00 37.18 2.01
1439 1965 7.891183 ACTGCAACTACACTAGAATTTACTG 57.109 36.000 0.00 0.00 0.00 2.74
1441 1967 8.582437 ACTGCAACTACACTAGAATTTACTGTA 58.418 33.333 0.00 0.00 0.00 2.74
1449 1975 7.048512 ACACTAGAATTTACTGTAGATTGGGC 58.951 38.462 8.17 0.00 0.00 5.36
1454 1980 0.837272 TACTGTAGATTGGGCTGGGC 59.163 55.000 0.00 0.00 0.00 5.36
1474 2005 1.009389 GTTCGTCGGCCAAGACTGAG 61.009 60.000 2.24 0.00 38.90 3.35
1481 2012 1.831580 GGCCAAGACTGAGCTGAATT 58.168 50.000 0.00 0.00 0.00 2.17
1601 2132 1.727335 GCGTTTCTCTGCTCACCTTAC 59.273 52.381 0.00 0.00 0.00 2.34
1602 2133 2.338500 CGTTTCTCTGCTCACCTTACC 58.662 52.381 0.00 0.00 0.00 2.85
1604 2135 3.330267 GTTTCTCTGCTCACCTTACCTG 58.670 50.000 0.00 0.00 0.00 4.00
1606 2137 0.901124 CTCTGCTCACCTTACCTGCT 59.099 55.000 0.00 0.00 0.00 4.24
1607 2138 0.610174 TCTGCTCACCTTACCTGCTG 59.390 55.000 0.00 0.00 0.00 4.41
1608 2139 1.003355 TGCTCACCTTACCTGCTGC 60.003 57.895 0.00 0.00 0.00 5.25
1609 2140 1.298014 GCTCACCTTACCTGCTGCT 59.702 57.895 0.00 0.00 0.00 4.24
1618 2151 1.882912 TACCTGCTGCTGTTTCACTG 58.117 50.000 0.00 0.00 0.00 3.66
1894 2454 2.369429 TGCTGGCCCCCATGGATA 60.369 61.111 15.22 0.00 35.39 2.59
1930 2490 6.764308 TCTAGTACAAGGTATTAGCGTTGT 57.236 37.500 8.74 8.74 45.53 3.32
1953 2513 1.620822 ACATTTTCCTCACCACCTGC 58.379 50.000 0.00 0.00 0.00 4.85
2026 2586 9.504710 CGACTTGGTAAGATACATATATGTAGC 57.495 37.037 26.48 26.48 46.81 3.58
2140 2701 3.459232 TTACTCATGGAGGATCTTGCG 57.541 47.619 0.00 0.00 33.35 4.85
2267 2835 7.011950 CCCAATTAAGTATGAAATGTACGAGCA 59.988 37.037 0.00 0.00 0.00 4.26
2290 2858 7.613801 AGCATAACCACCATTCATGTAAAACTA 59.386 33.333 0.00 0.00 0.00 2.24
2291 2859 8.247562 GCATAACCACCATTCATGTAAAACTAA 58.752 33.333 0.00 0.00 0.00 2.24
2296 2864 9.705290 ACCACCATTCATGTAAAACTAATTTTC 57.295 29.630 0.00 0.00 38.91 2.29
2335 2903 7.828717 TCATGTAATGCTCTGACCTTTTAATCA 59.171 33.333 0.00 0.00 46.21 2.57
2359 2927 7.283807 TCATCAAATATGGTTTCTGATCACCAG 59.716 37.037 13.06 0.00 46.38 4.00
2362 2930 2.455674 TGGTTTCTGATCACCAGTCG 57.544 50.000 5.36 0.00 43.38 4.18
2363 2931 1.079503 GGTTTCTGATCACCAGTCGC 58.920 55.000 0.00 0.00 43.38 5.19
2364 2932 1.608025 GGTTTCTGATCACCAGTCGCA 60.608 52.381 0.00 0.00 43.38 5.10
2366 2934 2.744202 GTTTCTGATCACCAGTCGCATT 59.256 45.455 0.00 0.00 43.38 3.56
2370 2942 2.862536 CTGATCACCAGTCGCATTACAG 59.137 50.000 0.00 0.00 38.10 2.74
2382 2954 4.090354 GTCGCATTACAGCAGTTAAACGTA 59.910 41.667 0.00 0.00 0.00 3.57
2456 3035 4.471386 GCATGTACCCAGGGATATACTGAT 59.529 45.833 14.54 0.00 38.20 2.90
2457 3036 5.627735 GCATGTACCCAGGGATATACTGATG 60.628 48.000 14.54 6.60 38.20 3.07
2511 3090 6.772233 TGACAGATTCCACTTCTCAATTTTCA 59.228 34.615 0.00 0.00 0.00 2.69
2512 3091 7.285172 TGACAGATTCCACTTCTCAATTTTCAA 59.715 33.333 0.00 0.00 0.00 2.69
2513 3092 8.186709 ACAGATTCCACTTCTCAATTTTCAAT 57.813 30.769 0.00 0.00 0.00 2.57
2514 3093 8.302438 ACAGATTCCACTTCTCAATTTTCAATC 58.698 33.333 0.00 0.00 0.00 2.67
2515 3094 8.521176 CAGATTCCACTTCTCAATTTTCAATCT 58.479 33.333 0.00 0.00 0.00 2.40
2516 3095 9.086758 AGATTCCACTTCTCAATTTTCAATCTT 57.913 29.630 0.00 0.00 0.00 2.40
2517 3096 9.702494 GATTCCACTTCTCAATTTTCAATCTTT 57.298 29.630 0.00 0.00 0.00 2.52
2518 3097 8.876275 TTCCACTTCTCAATTTTCAATCTTTG 57.124 30.769 0.00 0.00 0.00 2.77
2696 3284 4.453478 TGACAGAATTAAACAGCTGCTCAG 59.547 41.667 15.27 0.95 31.74 3.35
2794 3382 7.556844 AGCTACAGTTAGTGCTTATACAACAT 58.443 34.615 0.00 0.00 32.96 2.71
2826 3414 1.696336 TGCCTGCTTCAGTTTCTCTCT 59.304 47.619 0.00 0.00 0.00 3.10
2827 3415 2.289320 TGCCTGCTTCAGTTTCTCTCTC 60.289 50.000 0.00 0.00 0.00 3.20
2840 3428 9.083422 TCAGTTTCTCTCTCTATATATGTTGGG 57.917 37.037 0.00 0.00 0.00 4.12
2971 3559 8.230486 CACTGTGAGTACCTCATTTTAAATGAC 58.770 37.037 15.46 7.54 42.73 3.06
2984 3573 8.375506 TCATTTTAAATGACCTCTCAGTACTGT 58.624 33.333 21.99 2.48 0.00 3.55
3134 3723 5.353111 TCAAAGCCGTCGATACATGAATAA 58.647 37.500 0.00 0.00 0.00 1.40
3137 3726 4.299155 AGCCGTCGATACATGAATAACAG 58.701 43.478 0.00 0.00 0.00 3.16
3140 3729 4.299155 CGTCGATACATGAATAACAGGCT 58.701 43.478 0.00 0.00 33.22 4.58
3199 3790 1.134098 AGACACCCATATTTCCAGCCG 60.134 52.381 0.00 0.00 0.00 5.52
3362 3953 1.081376 GCAGCAGCAGAGCAAACAG 60.081 57.895 0.00 0.00 41.58 3.16
3422 4013 2.304761 TCAACTGTTGGTACCCAGGATC 59.695 50.000 19.55 0.00 33.81 3.36
3630 4221 4.584325 TGCAAGTCAAAAGCTTAATGAGGT 59.416 37.500 13.51 3.92 37.82 3.85
3742 4333 3.065786 GCATGGGTGATGTAGATGTTGTG 59.934 47.826 0.00 0.00 34.14 3.33
3877 4468 3.332919 TCTTGAGATCTGTGCAAAGCTC 58.667 45.455 0.00 0.00 0.00 4.09
3922 4513 1.134367 CTCGCAGGTATTCTTCGACCA 59.866 52.381 0.00 0.00 36.31 4.02
3970 4561 1.067416 GACCGCGATATGGCTGACA 59.933 57.895 8.23 0.00 0.00 3.58
4088 4681 6.641169 TGGAGAGTGTATATAGCTTCACTG 57.359 41.667 8.11 0.00 40.53 3.66
4101 4694 5.876612 AGCTTCACTGAAGTTCATGATTC 57.123 39.130 18.16 0.00 41.27 2.52
4103 4696 6.002704 AGCTTCACTGAAGTTCATGATTCTT 58.997 36.000 18.16 11.71 41.27 2.52
4104 4697 6.072618 AGCTTCACTGAAGTTCATGATTCTTG 60.073 38.462 18.16 10.06 41.27 3.02
4106 4699 7.572523 TTCACTGAAGTTCATGATTCTTGTT 57.427 32.000 15.29 0.00 0.00 2.83
4129 4722 8.946085 TGTTACTGAGGCTTGAGTTTATTTATG 58.054 33.333 0.00 0.00 0.00 1.90
4162 4755 2.245096 GTTTTCATGACTGCGCACATC 58.755 47.619 5.66 8.13 0.00 3.06
4237 4831 4.460263 TGATTGTGTGCTTCTACAAGGTT 58.540 39.130 0.00 0.00 39.83 3.50
4243 4837 4.335594 GTGTGCTTCTACAAGGTTTCAAGT 59.664 41.667 0.00 0.00 31.36 3.16
4261 4855 9.614792 GTTTCAAGTAATAATGGAGACCATAGT 57.385 33.333 3.64 0.00 44.40 2.12
4286 4880 9.101655 GTGATTTCATTCCCAATTATTTCCTTG 57.898 33.333 0.00 0.00 0.00 3.61
4403 5044 8.806429 TCCTGATACAAAATAGATGCAAAAGA 57.194 30.769 0.00 0.00 0.00 2.52
4434 5075 9.650539 CATAGTTCATAGGAGTTCATGATTAGG 57.349 37.037 0.00 0.00 31.50 2.69
4437 5078 8.772250 AGTTCATAGGAGTTCATGATTAGGAAA 58.228 33.333 0.00 0.00 31.50 3.13
4468 5109 6.170675 GTAGCAAGAAATTGGTACTGACTG 57.829 41.667 18.24 0.00 46.55 3.51
4469 5110 4.973168 AGCAAGAAATTGGTACTGACTGA 58.027 39.130 0.00 0.00 0.00 3.41
4470 5111 4.757149 AGCAAGAAATTGGTACTGACTGAC 59.243 41.667 0.00 0.00 0.00 3.51
4487 5137 1.004440 ACGAGGAACAAGAGGCAGC 60.004 57.895 0.00 0.00 0.00 5.25
4490 5140 0.322975 GAGGAACAAGAGGCAGCAGA 59.677 55.000 0.00 0.00 0.00 4.26
4496 5146 1.884579 ACAAGAGGCAGCAGACAATTG 59.115 47.619 3.24 3.24 0.00 2.32
4505 5155 1.956477 AGCAGACAATTGTTGTGTCCC 59.044 47.619 13.36 0.00 45.39 4.46
4510 5160 3.966665 AGACAATTGTTGTGTCCCCATTT 59.033 39.130 13.36 0.00 45.39 2.32
4520 5170 4.541705 TGTGTCCCCATTTGAAGAGAAAA 58.458 39.130 0.00 0.00 0.00 2.29
4582 5234 1.213926 GGGGAGGATGCTTTCACAGAT 59.786 52.381 0.00 0.00 0.00 2.90
4583 5235 2.439507 GGGGAGGATGCTTTCACAGATA 59.560 50.000 0.00 0.00 0.00 1.98
4584 5236 3.073650 GGGGAGGATGCTTTCACAGATAT 59.926 47.826 0.00 0.00 0.00 1.63
4586 5238 4.518211 GGGAGGATGCTTTCACAGATATTG 59.482 45.833 0.00 0.00 0.00 1.90
4587 5239 5.371526 GGAGGATGCTTTCACAGATATTGA 58.628 41.667 0.00 0.00 0.00 2.57
4589 5241 5.128919 AGGATGCTTTCACAGATATTGACC 58.871 41.667 0.00 0.00 0.00 4.02
4590 5242 4.276926 GGATGCTTTCACAGATATTGACCC 59.723 45.833 0.00 0.00 0.00 4.46
4624 5276 1.462426 TTGTAAATGGAGGGGGTGGT 58.538 50.000 0.00 0.00 0.00 4.16
4625 5277 2.362797 TGTAAATGGAGGGGGTGGTA 57.637 50.000 0.00 0.00 0.00 3.25
4628 5280 1.296002 AAATGGAGGGGGTGGTACTC 58.704 55.000 0.00 0.00 0.00 2.59
4640 5292 2.766313 GTGGTACTCACATTGCTGACA 58.234 47.619 8.95 0.00 45.39 3.58
4641 5293 3.138304 GTGGTACTCACATTGCTGACAA 58.862 45.455 8.95 0.00 45.39 3.18
4642 5294 3.563808 GTGGTACTCACATTGCTGACAAA 59.436 43.478 8.95 0.00 45.39 2.83
4643 5295 4.216257 GTGGTACTCACATTGCTGACAAAT 59.784 41.667 8.95 0.00 45.39 2.32
4644 5296 4.216042 TGGTACTCACATTGCTGACAAATG 59.784 41.667 0.00 0.00 39.77 2.32
4645 5297 4.455533 GGTACTCACATTGCTGACAAATGA 59.544 41.667 6.82 0.00 39.77 2.57
4647 5299 3.057736 ACTCACATTGCTGACAAATGAGC 60.058 43.478 16.95 0.00 46.80 4.26
4648 5300 2.229543 TCACATTGCTGACAAATGAGCC 59.770 45.455 6.82 0.00 39.77 4.70
4649 5301 1.200716 ACATTGCTGACAAATGAGCCG 59.799 47.619 6.82 0.00 39.77 5.52
4651 5303 0.874390 TTGCTGACAAATGAGCCGAC 59.126 50.000 0.00 0.00 34.04 4.79
4653 5305 1.291877 GCTGACAAATGAGCCGACGT 61.292 55.000 0.00 0.00 0.00 4.34
4655 5307 0.317160 TGACAAATGAGCCGACGTCT 59.683 50.000 14.70 0.00 0.00 4.18
4656 5308 1.270094 TGACAAATGAGCCGACGTCTT 60.270 47.619 14.70 0.00 0.00 3.01
4658 5310 1.270094 ACAAATGAGCCGACGTCTTCA 60.270 47.619 14.70 14.29 0.00 3.02
4660 5312 0.888619 AATGAGCCGACGTCTTCAGA 59.111 50.000 14.70 0.00 0.00 3.27
4661 5313 0.171455 ATGAGCCGACGTCTTCAGAC 59.829 55.000 14.70 0.00 41.47 3.51
4662 5314 1.153997 GAGCCGACGTCTTCAGACC 60.154 63.158 14.70 0.00 41.86 3.85
4663 5315 2.504244 GCCGACGTCTTCAGACCG 60.504 66.667 14.70 0.00 41.86 4.79
4664 5316 2.504244 CCGACGTCTTCAGACCGC 60.504 66.667 14.70 0.00 41.86 5.68
4665 5317 2.504244 CGACGTCTTCAGACCGCC 60.504 66.667 14.70 0.00 41.86 6.13
4666 5318 2.126031 GACGTCTTCAGACCGCCC 60.126 66.667 8.70 0.00 41.86 6.13
4667 5319 3.644399 GACGTCTTCAGACCGCCCC 62.644 68.421 8.70 0.00 41.86 5.80
4696 5993 5.105837 CCCCAATAAAACCATGGCAAAAATG 60.106 40.000 13.04 4.91 32.71 2.32
4697 5994 5.400703 CCAATAAAACCATGGCAAAAATGC 58.599 37.500 13.04 0.00 0.00 3.56
4698 5995 5.183522 CCAATAAAACCATGGCAAAAATGCT 59.816 36.000 13.04 0.00 34.73 3.79
4705 6011 1.006337 GGCAAAAATGCTGTGGCGA 60.006 52.632 0.40 0.00 42.25 5.54
4723 6029 1.676314 CGACGAGTCAGGGAGAGAGAA 60.676 57.143 4.02 0.00 0.00 2.87
4727 6033 2.422127 CGAGTCAGGGAGAGAGAAGAAC 59.578 54.545 0.00 0.00 0.00 3.01
4728 6034 2.758423 GAGTCAGGGAGAGAGAAGAACC 59.242 54.545 0.00 0.00 0.00 3.62
4732 6038 0.533032 GGGAGAGAGAAGAACCACCG 59.467 60.000 0.00 0.00 0.00 4.94
4740 6046 1.196012 GAAGAACCACCGGGAGAGAT 58.804 55.000 6.32 0.00 38.05 2.75
4741 6047 0.905357 AAGAACCACCGGGAGAGATG 59.095 55.000 6.32 0.00 38.05 2.90
4744 6050 3.164269 CCACCGGGAGAGATGGGG 61.164 72.222 6.32 0.00 35.59 4.96
4745 6051 3.866582 CACCGGGAGAGATGGGGC 61.867 72.222 6.32 0.00 0.00 5.80
4749 6055 3.917760 GGGAGAGATGGGGCGACG 61.918 72.222 0.00 0.00 0.00 5.12
4752 6058 3.432051 GAGAGATGGGGCGACGGTG 62.432 68.421 0.00 0.00 0.00 4.94
4753 6059 3.458163 GAGATGGGGCGACGGTGA 61.458 66.667 0.00 0.00 0.00 4.02
4754 6060 3.000819 AGATGGGGCGACGGTGAA 61.001 61.111 0.00 0.00 0.00 3.18
4755 6061 2.818274 GATGGGGCGACGGTGAAC 60.818 66.667 0.00 0.00 0.00 3.18
4756 6062 3.310860 GATGGGGCGACGGTGAACT 62.311 63.158 0.00 0.00 0.00 3.01
4757 6063 3.605749 ATGGGGCGACGGTGAACTG 62.606 63.158 0.00 0.00 0.00 3.16
4775 6081 3.451141 CTGCTTTGGGCTGTTTTAACA 57.549 42.857 0.00 0.00 42.39 2.41
4803 6109 0.390735 CTAACAGCCTAACGCCCGTT 60.391 55.000 11.05 11.05 41.65 4.44
4809 6116 2.816520 CTAACGCCCGTTTCCCCG 60.817 66.667 11.54 0.00 39.31 5.73
4820 6127 0.743345 GTTTCCCCGCGCTGTCTATT 60.743 55.000 5.56 0.00 0.00 1.73
4822 6129 1.609635 TTCCCCGCGCTGTCTATTGA 61.610 55.000 5.56 0.00 0.00 2.57
4825 6132 0.530650 CCCGCGCTGTCTATTGATGT 60.531 55.000 5.56 0.00 0.00 3.06
4832 6139 2.531912 GCTGTCTATTGATGTCACGTCG 59.468 50.000 0.00 0.00 0.00 5.12
4835 6142 3.439129 TGTCTATTGATGTCACGTCGACT 59.561 43.478 14.70 0.00 45.60 4.18
4836 6143 4.082949 TGTCTATTGATGTCACGTCGACTT 60.083 41.667 14.70 0.03 45.60 3.01
4848 6155 2.137528 TCGACTTGACAGGTGGCCA 61.138 57.895 0.00 0.00 0.00 5.36
4849 6156 1.669115 CGACTTGACAGGTGGCCAG 60.669 63.158 5.11 0.00 0.00 4.85
4850 6157 1.968540 GACTTGACAGGTGGCCAGC 60.969 63.158 27.66 27.66 0.00 4.85
4892 6200 3.389687 CGAGCAAATCGCACAATTAGT 57.610 42.857 0.00 0.00 45.98 2.24
4902 6210 1.909700 CACAATTAGTGGTGCCTGGT 58.090 50.000 0.00 0.00 44.69 4.00
4903 6211 3.066291 CACAATTAGTGGTGCCTGGTA 57.934 47.619 0.00 0.00 44.69 3.25
4904 6212 3.620488 CACAATTAGTGGTGCCTGGTAT 58.380 45.455 0.00 0.00 44.69 2.73
4905 6213 4.776349 CACAATTAGTGGTGCCTGGTATA 58.224 43.478 0.00 0.00 44.69 1.47
4906 6214 4.574828 CACAATTAGTGGTGCCTGGTATAC 59.425 45.833 0.00 0.00 44.69 1.47
4907 6215 4.226394 ACAATTAGTGGTGCCTGGTATACA 59.774 41.667 5.01 0.00 0.00 2.29
4908 6216 3.899052 TTAGTGGTGCCTGGTATACAC 57.101 47.619 5.01 12.35 0.00 2.90
4909 6217 1.651737 AGTGGTGCCTGGTATACACA 58.348 50.000 19.03 0.00 36.00 3.72
4910 6218 1.982226 AGTGGTGCCTGGTATACACAA 59.018 47.619 19.03 1.28 36.00 3.33
4911 6219 2.027192 AGTGGTGCCTGGTATACACAAG 60.027 50.000 19.03 0.00 36.00 3.16
4912 6220 1.339631 TGGTGCCTGGTATACACAAGC 60.340 52.381 5.01 6.60 36.00 4.01
4913 6221 1.379527 GTGCCTGGTATACACAAGCC 58.620 55.000 5.01 0.00 34.43 4.35
4914 6222 1.065418 GTGCCTGGTATACACAAGCCT 60.065 52.381 5.01 0.00 34.43 4.58
4915 6223 1.209504 TGCCTGGTATACACAAGCCTC 59.790 52.381 5.01 0.00 0.00 4.70
4916 6224 1.806623 GCCTGGTATACACAAGCCTCG 60.807 57.143 5.01 0.00 0.00 4.63
4917 6225 1.754803 CCTGGTATACACAAGCCTCGA 59.245 52.381 5.01 0.00 0.00 4.04
4918 6226 2.167693 CCTGGTATACACAAGCCTCGAA 59.832 50.000 5.01 0.00 0.00 3.71
4919 6227 3.369052 CCTGGTATACACAAGCCTCGAAA 60.369 47.826 5.01 0.00 0.00 3.46
4926 6234 0.535102 ACAAGCCTCGAAAGTGGTGG 60.535 55.000 0.00 0.00 46.17 4.61
4973 6281 2.053747 TGGTGGTTTCCTGATACCCT 57.946 50.000 4.61 0.00 32.36 4.34
4977 6285 2.772515 GTGGTTTCCTGATACCCTAGCT 59.227 50.000 4.61 0.00 32.36 3.32
4978 6286 3.039011 TGGTTTCCTGATACCCTAGCTC 58.961 50.000 0.00 0.00 32.36 4.09
4980 6288 3.039011 GTTTCCTGATACCCTAGCTCCA 58.961 50.000 0.00 0.00 0.00 3.86
4981 6289 3.414759 TTCCTGATACCCTAGCTCCAA 57.585 47.619 0.00 0.00 0.00 3.53
4982 6290 3.414759 TCCTGATACCCTAGCTCCAAA 57.585 47.619 0.00 0.00 0.00 3.28
4983 6291 3.941629 TCCTGATACCCTAGCTCCAAAT 58.058 45.455 0.00 0.00 0.00 2.32
4984 6292 5.087923 TCCTGATACCCTAGCTCCAAATA 57.912 43.478 0.00 0.00 0.00 1.40
4986 6294 5.485353 TCCTGATACCCTAGCTCCAAATATG 59.515 44.000 0.00 0.00 0.00 1.78
4987 6295 5.485353 CCTGATACCCTAGCTCCAAATATGA 59.515 44.000 0.00 0.00 0.00 2.15
4989 6297 6.950842 TGATACCCTAGCTCCAAATATGATG 58.049 40.000 0.00 0.00 0.00 3.07
4990 6298 4.647564 ACCCTAGCTCCAAATATGATGG 57.352 45.455 0.00 2.06 39.41 3.51
4991 6299 3.245052 ACCCTAGCTCCAAATATGATGGC 60.245 47.826 0.00 0.00 37.88 4.40
4992 6300 3.245016 CCCTAGCTCCAAATATGATGGCA 60.245 47.826 0.00 0.00 37.88 4.92
4993 6301 3.755378 CCTAGCTCCAAATATGATGGCAC 59.245 47.826 0.00 0.00 37.88 5.01
4994 6302 2.590821 AGCTCCAAATATGATGGCACC 58.409 47.619 0.00 0.00 37.88 5.01
5031 6347 3.866883 AATTTGGTTATTGCCGGACAG 57.133 42.857 5.05 0.00 0.00 3.51
5033 6349 0.322997 TTGGTTATTGCCGGACAGGG 60.323 55.000 5.05 0.00 41.48 4.45
5037 6353 1.065272 GTTATTGCCGGACAGGGGTAA 60.065 52.381 5.05 0.00 41.48 2.85
5043 6359 2.369532 TGCCGGACAGGGGTAATATTAC 59.630 50.000 15.98 15.98 41.48 1.89
5067 6383 8.761575 ACATGTTTAAAACCAATATTCTGCTG 57.238 30.769 0.00 0.00 0.00 4.41
5068 6384 8.584157 ACATGTTTAAAACCAATATTCTGCTGA 58.416 29.630 0.00 0.00 0.00 4.26
5069 6385 8.863049 CATGTTTAAAACCAATATTCTGCTGAC 58.137 33.333 0.00 0.00 0.00 3.51
5070 6386 7.946207 TGTTTAAAACCAATATTCTGCTGACA 58.054 30.769 0.00 0.00 0.00 3.58
5071 6387 8.081633 TGTTTAAAACCAATATTCTGCTGACAG 58.918 33.333 0.00 0.00 45.95 3.51
5078 6404 6.070538 ACCAATATTCTGCTGACAGTACTCTT 60.071 38.462 3.99 0.00 44.77 2.85
5080 6406 3.667497 TTCTGCTGACAGTACTCTTGG 57.333 47.619 3.99 0.00 44.77 3.61
5086 6412 5.016831 TGCTGACAGTACTCTTGGATTCTA 58.983 41.667 3.99 0.00 0.00 2.10
5089 6415 6.183360 GCTGACAGTACTCTTGGATTCTATCA 60.183 42.308 3.99 0.00 0.00 2.15
5114 6440 9.359653 CATGATAAAATATATTCCCTCCATCCC 57.640 37.037 0.00 0.00 0.00 3.85
5115 6441 8.475445 TGATAAAATATATTCCCTCCATCCCA 57.525 34.615 0.00 0.00 0.00 4.37
5116 6442 9.083781 TGATAAAATATATTCCCTCCATCCCAT 57.916 33.333 0.00 0.00 0.00 4.00
5125 6451 9.989794 ATATTCCCTCCATCCCATAATATAAGA 57.010 33.333 0.00 0.00 0.00 2.10
5126 6452 7.755666 TTCCCTCCATCCCATAATATAAGAG 57.244 40.000 0.00 0.00 0.00 2.85
5127 6453 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
5128 6454 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
5129 6455 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
5130 6456 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
5131 6457 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
5132 6458 6.878923 TCCATCCCATAATATAAGAGCGTTTG 59.121 38.462 0.00 0.00 0.00 2.93
5133 6459 6.878923 CCATCCCATAATATAAGAGCGTTTGA 59.121 38.462 0.00 0.00 0.00 2.69
5134 6460 7.148407 CCATCCCATAATATAAGAGCGTTTGAC 60.148 40.741 0.00 0.00 0.00 3.18
5135 6461 6.822442 TCCCATAATATAAGAGCGTTTGACA 58.178 36.000 0.00 0.00 0.00 3.58
5136 6462 6.704493 TCCCATAATATAAGAGCGTTTGACAC 59.296 38.462 0.00 0.00 0.00 3.67
5137 6463 6.706270 CCCATAATATAAGAGCGTTTGACACT 59.294 38.462 0.00 0.00 0.00 3.55
5138 6464 7.870954 CCCATAATATAAGAGCGTTTGACACTA 59.129 37.037 0.00 0.00 0.00 2.74
5139 6465 8.916654 CCATAATATAAGAGCGTTTGACACTAG 58.083 37.037 0.00 0.00 0.00 2.57
5140 6466 6.830114 AATATAAGAGCGTTTGACACTAGC 57.170 37.500 0.00 0.00 0.00 3.42
5141 6467 1.419374 AAGAGCGTTTGACACTAGCG 58.581 50.000 0.00 0.00 0.00 4.26
5142 6468 0.314302 AGAGCGTTTGACACTAGCGT 59.686 50.000 0.00 0.00 0.00 5.07
5143 6469 1.538512 AGAGCGTTTGACACTAGCGTA 59.461 47.619 0.00 0.00 0.00 4.42
5144 6470 2.030540 AGAGCGTTTGACACTAGCGTAA 60.031 45.455 0.00 0.00 0.00 3.18
5145 6471 2.921754 GAGCGTTTGACACTAGCGTAAT 59.078 45.455 0.00 0.00 0.00 1.89
5146 6472 2.666508 AGCGTTTGACACTAGCGTAATG 59.333 45.455 0.00 0.00 0.00 1.90
5147 6473 2.410730 GCGTTTGACACTAGCGTAATGT 59.589 45.455 0.00 0.00 0.00 2.71
5148 6474 3.481467 GCGTTTGACACTAGCGTAATGTC 60.481 47.826 3.99 3.99 42.54 3.06
5155 6481 5.013861 ACACTAGCGTAATGTCAAAAACG 57.986 39.130 0.00 0.00 38.34 3.60
5177 6503 9.915629 AAACGCTCTTATATTATAAGACAGAGG 57.084 33.333 18.17 11.50 31.09 3.69
5178 6504 8.057536 ACGCTCTTATATTATAAGACAGAGGG 57.942 38.462 21.77 21.77 42.53 4.30
5179 6505 7.889073 ACGCTCTTATATTATAAGACAGAGGGA 59.111 37.037 26.20 6.15 40.49 4.20
5180 6506 8.402472 CGCTCTTATATTATAAGACAGAGGGAG 58.598 40.741 20.21 9.89 40.49 4.30
5181 6507 9.250246 GCTCTTATATTATAAGACAGAGGGAGT 57.750 37.037 18.17 0.00 31.09 3.85
5193 6519 5.597182 AGACAGAGGGAGTATATAAACGCAA 59.403 40.000 7.05 0.00 0.00 4.85
5261 6594 4.037923 ACATCACACCGCTGAAAAGAAAAT 59.962 37.500 0.00 0.00 0.00 1.82
5262 6595 4.223320 TCACACCGCTGAAAAGAAAATC 57.777 40.909 0.00 0.00 0.00 2.17
5265 6598 2.558359 CACCGCTGAAAAGAAAATCCCT 59.442 45.455 0.00 0.00 0.00 4.20
5266 6599 2.820197 ACCGCTGAAAAGAAAATCCCTC 59.180 45.455 0.00 0.00 0.00 4.30
5267 6600 3.084786 CCGCTGAAAAGAAAATCCCTCT 58.915 45.455 0.00 0.00 0.00 3.69
5268 6601 3.119708 CCGCTGAAAAGAAAATCCCTCTG 60.120 47.826 0.00 0.00 0.00 3.35
5269 6602 3.671702 CGCTGAAAAGAAAATCCCTCTGC 60.672 47.826 0.00 0.00 0.00 4.26
5270 6603 3.367806 GCTGAAAAGAAAATCCCTCTGCC 60.368 47.826 0.00 0.00 0.00 4.85
5271 6604 3.828451 CTGAAAAGAAAATCCCTCTGCCA 59.172 43.478 0.00 0.00 0.00 4.92
5272 6605 3.828451 TGAAAAGAAAATCCCTCTGCCAG 59.172 43.478 0.00 0.00 0.00 4.85
5273 6606 3.532641 AAAGAAAATCCCTCTGCCAGT 57.467 42.857 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.720002 TCCCCCGGCTAATCTTTTTAGAT 59.280 43.478 0.00 0.00 0.00 1.98
31 32 4.394920 TGAACTCGCCATCAAAGTATTTCC 59.605 41.667 0.00 0.00 35.03 3.13
43 45 6.928492 ACAAATTAACAAAATGAACTCGCCAT 59.072 30.769 0.00 0.00 0.00 4.40
61 63 4.004982 GCACCGGTAGGAGAAACAAATTA 58.995 43.478 6.87 0.00 41.02 1.40
197 462 4.318021 CCGTGCAGTGCAGTGTGC 62.318 66.667 20.42 15.03 45.29 4.57
244 510 3.751246 CTTGTGGCCACCCATGCG 61.751 66.667 32.62 10.67 44.51 4.73
301 568 8.302438 AGTAGTGGTGTGTGTTTAATACTCTAC 58.698 37.037 0.00 0.00 0.00 2.59
323 593 1.140589 CTCCACTGCGCCTGAGTAG 59.859 63.158 4.18 0.00 0.00 2.57
324 594 1.606601 ACTCCACTGCGCCTGAGTA 60.607 57.895 4.18 0.00 36.36 2.59
325 595 2.919856 ACTCCACTGCGCCTGAGT 60.920 61.111 4.18 8.68 33.39 3.41
327 597 4.007644 CCACTCCACTGCGCCTGA 62.008 66.667 4.18 0.00 0.00 3.86
328 598 3.947132 CTCCACTCCACTGCGCCTG 62.947 68.421 4.18 0.00 0.00 4.85
329 599 3.699894 CTCCACTCCACTGCGCCT 61.700 66.667 4.18 0.00 0.00 5.52
431 701 1.271054 CCTTTGGTCTGGTCTGGTCTG 60.271 57.143 0.00 0.00 0.00 3.51
432 702 1.059913 CCTTTGGTCTGGTCTGGTCT 58.940 55.000 0.00 0.00 0.00 3.85
433 703 0.036875 CCCTTTGGTCTGGTCTGGTC 59.963 60.000 0.00 0.00 0.00 4.02
434 704 0.697854 ACCCTTTGGTCTGGTCTGGT 60.698 55.000 0.00 0.00 43.06 4.00
445 715 0.537371 AAAGAGCACCGACCCTTTGG 60.537 55.000 0.00 0.00 37.80 3.28
487 757 4.260170 AGTCTGAAGAAATCCATGCAGTC 58.740 43.478 0.00 0.00 0.00 3.51
488 758 4.298103 AGTCTGAAGAAATCCATGCAGT 57.702 40.909 0.00 0.00 0.00 4.40
490 760 4.654915 TCAAGTCTGAAGAAATCCATGCA 58.345 39.130 0.00 0.00 0.00 3.96
493 763 6.440010 TCTCTCTCAAGTCTGAAGAAATCCAT 59.560 38.462 0.00 0.00 0.00 3.41
494 764 5.777223 TCTCTCTCAAGTCTGAAGAAATCCA 59.223 40.000 0.00 0.00 0.00 3.41
495 765 6.279513 TCTCTCTCAAGTCTGAAGAAATCC 57.720 41.667 0.00 0.00 0.00 3.01
496 766 6.256321 GCATCTCTCTCAAGTCTGAAGAAATC 59.744 42.308 0.00 0.00 0.00 2.17
497 767 6.108015 GCATCTCTCTCAAGTCTGAAGAAAT 58.892 40.000 0.00 0.00 0.00 2.17
574 896 7.506261 GGTGGATGGAGTAGTATTTTCTCTCTA 59.494 40.741 0.00 0.00 0.00 2.43
632 957 1.206831 GGAGGAAACGTTGCGCTTC 59.793 57.895 9.73 2.96 32.19 3.86
634 959 2.110213 TGGAGGAAACGTTGCGCT 59.890 55.556 9.73 0.00 0.00 5.92
724 1049 5.501897 GCTCAACTAATTAATCCGTCGTTGG 60.502 44.000 10.05 4.72 33.18 3.77
726 1051 5.416947 AGCTCAACTAATTAATCCGTCGTT 58.583 37.500 0.00 0.00 0.00 3.85
792 1118 3.265479 AGACCAATGGAAGGAAGAGAAGG 59.735 47.826 6.16 0.00 0.00 3.46
795 1121 2.840651 GGAGACCAATGGAAGGAAGAGA 59.159 50.000 6.16 0.00 0.00 3.10
796 1122 2.419297 CGGAGACCAATGGAAGGAAGAG 60.419 54.545 6.16 0.00 0.00 2.85
797 1123 1.555075 CGGAGACCAATGGAAGGAAGA 59.445 52.381 6.16 0.00 0.00 2.87
798 1124 1.279271 ACGGAGACCAATGGAAGGAAG 59.721 52.381 6.16 0.00 0.00 3.46
799 1125 1.278127 GACGGAGACCAATGGAAGGAA 59.722 52.381 6.16 0.00 0.00 3.36
800 1126 0.902531 GACGGAGACCAATGGAAGGA 59.097 55.000 6.16 0.00 0.00 3.36
807 1157 1.196012 GGAGGAAGACGGAGACCAAT 58.804 55.000 0.00 0.00 0.00 3.16
830 1180 3.276846 GTGTGTGTCGGGTGTGGC 61.277 66.667 0.00 0.00 0.00 5.01
866 1223 1.472480 GTGGAAGTGGCGCAATAATGT 59.528 47.619 10.83 0.00 0.00 2.71
928 1287 0.806492 GATGGTCGCGGAGAGGAAAC 60.806 60.000 6.13 0.00 0.00 2.78
930 1289 1.043116 ATGATGGTCGCGGAGAGGAA 61.043 55.000 6.13 0.00 0.00 3.36
969 1339 2.985456 GCTCAGGTGAGGACAGGG 59.015 66.667 9.03 0.00 42.29 4.45
994 1364 3.785486 CTTGCTCGTCTTGTGGATGATA 58.215 45.455 0.00 0.00 39.03 2.15
996 1366 1.941209 GCTTGCTCGTCTTGTGGATGA 60.941 52.381 0.00 0.00 37.61 2.92
997 1367 0.445436 GCTTGCTCGTCTTGTGGATG 59.555 55.000 0.00 0.00 0.00 3.51
1022 1436 3.459598 TCCATGGGATTCCTTACCTCTTG 59.540 47.826 13.02 0.00 0.00 3.02
1030 1444 1.302907 ACTGCTCCATGGGATTCCTT 58.697 50.000 13.02 0.00 0.00 3.36
1039 1453 0.179100 CCACCTCGTACTGCTCCATG 60.179 60.000 0.00 0.00 0.00 3.66
1315 1792 2.159819 GAACTGGTGAGCTGAGGCGA 62.160 60.000 0.00 0.00 44.37 5.54
1328 1805 1.669115 CTGCAGACCCACGAACTGG 60.669 63.158 8.42 0.00 40.26 4.00
1333 1810 1.591703 GACATCTGCAGACCCACGA 59.408 57.895 20.97 0.00 0.00 4.35
1337 1814 1.267574 TGAGGGACATCTGCAGACCC 61.268 60.000 26.37 26.37 40.71 4.46
1338 1815 0.835941 ATGAGGGACATCTGCAGACC 59.164 55.000 20.97 15.98 33.46 3.85
1417 1894 8.799367 TCTACAGTAAATTCTAGTGTAGTTGCA 58.201 33.333 23.86 13.47 45.12 4.08
1425 1951 7.225538 CAGCCCAATCTACAGTAAATTCTAGTG 59.774 40.741 0.00 0.00 0.00 2.74
1432 1958 3.688414 GCCCAGCCCAATCTACAGTAAAT 60.688 47.826 0.00 0.00 0.00 1.40
1434 1960 1.211949 GCCCAGCCCAATCTACAGTAA 59.788 52.381 0.00 0.00 0.00 2.24
1435 1961 0.837272 GCCCAGCCCAATCTACAGTA 59.163 55.000 0.00 0.00 0.00 2.74
1437 1963 1.524621 CGCCCAGCCCAATCTACAG 60.525 63.158 0.00 0.00 0.00 2.74
1439 1965 1.077716 AACGCCCAGCCCAATCTAC 60.078 57.895 0.00 0.00 0.00 2.59
1441 1967 2.044946 GAACGCCCAGCCCAATCT 60.045 61.111 0.00 0.00 0.00 2.40
1454 1980 2.049433 AGTCTTGGCCGACGAACG 60.049 61.111 0.00 0.00 38.90 3.95
1474 2005 2.218530 GCAACCACGAAACAAATTCAGC 59.781 45.455 0.00 0.00 37.96 4.26
1481 2012 1.388065 CCCCTGCAACCACGAAACAA 61.388 55.000 0.00 0.00 0.00 2.83
1601 2132 0.590195 GTCAGTGAAACAGCAGCAGG 59.410 55.000 0.00 0.00 41.43 4.85
1602 2133 0.234106 CGTCAGTGAAACAGCAGCAG 59.766 55.000 0.00 0.00 41.43 4.24
1604 2135 0.233332 GACGTCAGTGAAACAGCAGC 59.767 55.000 11.55 0.00 41.43 5.25
1606 2137 0.101579 TCGACGTCAGTGAAACAGCA 59.898 50.000 17.16 0.00 41.43 4.41
1607 2138 1.205657 TTCGACGTCAGTGAAACAGC 58.794 50.000 17.16 0.00 41.43 4.40
1608 2139 3.489416 TGAATTCGACGTCAGTGAAACAG 59.511 43.478 17.16 0.00 41.43 3.16
1609 2140 3.244345 GTGAATTCGACGTCAGTGAAACA 59.756 43.478 17.16 12.02 41.43 2.83
1618 2151 1.683790 CGCCCTGTGAATTCGACGTC 61.684 60.000 5.18 5.18 0.00 4.34
1880 2440 0.700616 TGATGTATCCATGGGGGCCA 60.701 55.000 13.02 4.35 38.19 5.36
1930 2490 4.651778 CAGGTGGTGAGGAAAATGTTAGA 58.348 43.478 0.00 0.00 0.00 2.10
2026 2586 8.023128 CCAATGAAGTTGTGTAGTAATTTGAGG 58.977 37.037 0.00 0.00 36.01 3.86
2255 2823 3.945346 TGGTGGTTATGCTCGTACATTT 58.055 40.909 0.00 0.00 0.00 2.32
2305 2873 7.472334 AAAGGTCAGAGCATTACATGATTTT 57.528 32.000 0.00 0.00 0.00 1.82
2306 2874 7.472334 AAAAGGTCAGAGCATTACATGATTT 57.528 32.000 0.00 0.00 0.00 2.17
2307 2875 8.579850 TTAAAAGGTCAGAGCATTACATGATT 57.420 30.769 0.00 0.00 0.00 2.57
2308 2876 8.757982 ATTAAAAGGTCAGAGCATTACATGAT 57.242 30.769 0.00 0.00 0.00 2.45
2309 2877 7.828717 TGATTAAAAGGTCAGAGCATTACATGA 59.171 33.333 0.00 0.00 0.00 3.07
2310 2878 7.988737 TGATTAAAAGGTCAGAGCATTACATG 58.011 34.615 1.66 0.00 0.00 3.21
2311 2879 8.757982 ATGATTAAAAGGTCAGAGCATTACAT 57.242 30.769 1.66 0.38 0.00 2.29
2312 2880 7.828717 TGATGATTAAAAGGTCAGAGCATTACA 59.171 33.333 1.66 0.00 0.00 2.41
2313 2881 8.213518 TGATGATTAAAAGGTCAGAGCATTAC 57.786 34.615 1.66 0.00 0.00 1.89
2318 2886 9.674824 CATATTTGATGATTAAAAGGTCAGAGC 57.325 33.333 0.00 0.00 0.00 4.09
2335 2903 7.121382 ACTGGTGATCAGAAACCATATTTGAT 58.879 34.615 0.00 0.00 45.24 2.57
2350 2918 2.892374 CTGTAATGCGACTGGTGATCA 58.108 47.619 0.00 0.00 0.00 2.92
2351 2919 1.594862 GCTGTAATGCGACTGGTGATC 59.405 52.381 0.00 0.00 0.00 2.92
2355 2923 0.321671 ACTGCTGTAATGCGACTGGT 59.678 50.000 0.00 0.00 35.36 4.00
2359 2927 3.120786 ACGTTTAACTGCTGTAATGCGAC 60.121 43.478 14.03 2.03 35.36 5.19
2362 2930 6.183359 GCTTTTACGTTTAACTGCTGTAATGC 60.183 38.462 0.00 0.00 0.00 3.56
2363 2931 6.853872 TGCTTTTACGTTTAACTGCTGTAATG 59.146 34.615 0.00 0.00 0.00 1.90
2364 2932 6.961576 TGCTTTTACGTTTAACTGCTGTAAT 58.038 32.000 0.00 0.00 0.00 1.89
2366 2934 5.987777 TGCTTTTACGTTTAACTGCTGTA 57.012 34.783 0.00 0.00 0.00 2.74
2370 2942 6.892430 CAGTTTTTGCTTTTACGTTTAACTGC 59.108 34.615 0.00 0.00 35.25 4.40
2439 3011 2.269940 GGCATCAGTATATCCCTGGGT 58.730 52.381 13.56 2.73 0.00 4.51
2486 3065 6.772233 TGAAAATTGAGAAGTGGAATCTGTCA 59.228 34.615 0.00 0.00 0.00 3.58
2488 3067 7.587037 TTGAAAATTGAGAAGTGGAATCTGT 57.413 32.000 0.00 0.00 0.00 3.41
2807 3395 2.028203 AGAGAGAGAAACTGAAGCAGGC 60.028 50.000 0.00 0.00 35.51 4.85
2867 3455 1.608055 TGTTGCCATGTCCTTCACAG 58.392 50.000 0.00 0.00 38.85 3.66
2971 3559 3.766591 AGTTGATCCACAGTACTGAGAGG 59.233 47.826 29.30 23.96 0.00 3.69
2984 3573 9.632807 CGATTTGGTAAAAATAAAGTTGATCCA 57.367 29.630 0.00 0.00 0.00 3.41
3009 3598 2.159599 GCTTCCTGTGAAAGAATGCTCG 60.160 50.000 0.00 0.00 0.00 5.03
3156 3745 4.645809 GCTCCCCAGCCTGTAAAG 57.354 61.111 0.00 0.00 40.14 1.85
3199 3790 5.505324 GCAGTTGATTGATTCAGCCAGATAC 60.505 44.000 0.00 0.00 36.29 2.24
3321 3912 0.464036 TAATGCTTCGCTGGATCCGT 59.536 50.000 7.39 0.00 0.00 4.69
3362 3953 0.793250 GAGCTGTCTCTTGTTTCCGC 59.207 55.000 0.00 0.00 36.42 5.54
3364 3955 2.062519 GTCGAGCTGTCTCTTGTTTCC 58.937 52.381 0.00 0.00 37.19 3.13
3630 4221 6.177610 GTCATTTCCTCATTTGGTACTGGTA 58.822 40.000 0.00 0.00 0.00 3.25
3742 4333 1.482593 ACTGGTGATGATTCCTCCGTC 59.517 52.381 0.00 0.00 0.00 4.79
3772 4363 2.624636 CTGCCTGCATTTCCCAATTTC 58.375 47.619 0.00 0.00 0.00 2.17
3911 4502 2.107950 TCGCCAAATGGTCGAAGAAT 57.892 45.000 13.83 0.00 39.69 2.40
3937 4528 1.003331 GCGGTCTCTCTAGATGACACG 60.003 57.143 20.49 20.08 33.30 4.49
4088 4681 7.625185 GCCTCAGTAACAAGAATCATGAACTTC 60.625 40.741 13.25 7.95 0.00 3.01
4101 4694 7.440523 AATAAACTCAAGCCTCAGTAACAAG 57.559 36.000 0.00 0.00 0.00 3.16
4103 4696 8.946085 CATAAATAAACTCAAGCCTCAGTAACA 58.054 33.333 0.00 0.00 0.00 2.41
4104 4697 8.947115 ACATAAATAAACTCAAGCCTCAGTAAC 58.053 33.333 0.00 0.00 0.00 2.50
4106 4699 8.946085 CAACATAAATAAACTCAAGCCTCAGTA 58.054 33.333 0.00 0.00 0.00 2.74
4129 4722 7.645340 GCAGTCATGAAAACCATATACATCAAC 59.355 37.037 0.00 0.00 33.31 3.18
4189 4782 6.095440 GCAGGTGATGTTGTACAAAGGATTAT 59.905 38.462 10.51 0.00 0.00 1.28
4191 4784 4.218417 GCAGGTGATGTTGTACAAAGGATT 59.782 41.667 10.51 0.00 0.00 3.01
4196 4789 3.814625 TCAGCAGGTGATGTTGTACAAA 58.185 40.909 10.51 1.41 40.72 2.83
4237 4831 8.988060 TCACTATGGTCTCCATTATTACTTGAA 58.012 33.333 6.59 0.00 42.23 2.69
4261 4855 7.769970 GCAAGGAAATAATTGGGAATGAAATCA 59.230 33.333 0.00 0.00 0.00 2.57
4286 4880 9.669353 CACCTTCACAAATTATTACTATCATGC 57.331 33.333 0.00 0.00 0.00 4.06
4351 4945 7.855375 AGAATCCAAGAGTAAACTGATGATGA 58.145 34.615 0.00 0.00 0.00 2.92
4434 5075 9.860898 ACCAATTTCTTGCTACTTTCATATTTC 57.139 29.630 0.00 0.00 0.00 2.17
4437 5078 9.686683 AGTACCAATTTCTTGCTACTTTCATAT 57.313 29.630 0.00 0.00 32.32 1.78
4439 5080 7.665559 TCAGTACCAATTTCTTGCTACTTTCAT 59.334 33.333 0.00 0.00 33.44 2.57
4440 5081 6.995686 TCAGTACCAATTTCTTGCTACTTTCA 59.004 34.615 0.00 0.00 33.44 2.69
4441 5082 7.173390 AGTCAGTACCAATTTCTTGCTACTTTC 59.827 37.037 0.00 0.00 33.44 2.62
4443 5084 6.428159 CAGTCAGTACCAATTTCTTGCTACTT 59.572 38.462 0.00 0.00 33.44 2.24
4444 5085 5.934625 CAGTCAGTACCAATTTCTTGCTACT 59.065 40.000 0.00 0.00 35.20 2.57
4445 5086 5.932303 TCAGTCAGTACCAATTTCTTGCTAC 59.068 40.000 0.00 0.00 0.00 3.58
4446 5087 5.932303 GTCAGTCAGTACCAATTTCTTGCTA 59.068 40.000 0.00 0.00 0.00 3.49
4447 5088 4.757149 GTCAGTCAGTACCAATTTCTTGCT 59.243 41.667 0.00 0.00 0.00 3.91
4448 5089 4.377431 CGTCAGTCAGTACCAATTTCTTGC 60.377 45.833 0.00 0.00 0.00 4.01
4449 5090 4.988540 TCGTCAGTCAGTACCAATTTCTTG 59.011 41.667 0.00 0.00 0.00 3.02
4450 5091 5.209818 TCGTCAGTCAGTACCAATTTCTT 57.790 39.130 0.00 0.00 0.00 2.52
4451 5092 4.322049 CCTCGTCAGTCAGTACCAATTTCT 60.322 45.833 0.00 0.00 0.00 2.52
4452 5093 3.927142 CCTCGTCAGTCAGTACCAATTTC 59.073 47.826 0.00 0.00 0.00 2.17
4463 5104 1.613925 CCTCTTGTTCCTCGTCAGTCA 59.386 52.381 0.00 0.00 0.00 3.41
4466 5107 0.318441 TGCCTCTTGTTCCTCGTCAG 59.682 55.000 0.00 0.00 0.00 3.51
4467 5108 0.318441 CTGCCTCTTGTTCCTCGTCA 59.682 55.000 0.00 0.00 0.00 4.35
4468 5109 1.016653 GCTGCCTCTTGTTCCTCGTC 61.017 60.000 0.00 0.00 0.00 4.20
4469 5110 1.004440 GCTGCCTCTTGTTCCTCGT 60.004 57.895 0.00 0.00 0.00 4.18
4470 5111 1.004560 TGCTGCCTCTTGTTCCTCG 60.005 57.895 0.00 0.00 0.00 4.63
4487 5137 2.305928 TGGGGACACAACAATTGTCTG 58.694 47.619 12.39 14.06 43.23 3.51
4520 5170 6.165700 ACTTGACCTGCATTTTCTTGATTT 57.834 33.333 0.00 0.00 0.00 2.17
4524 5174 4.202040 TGTGACTTGACCTGCATTTTCTTG 60.202 41.667 0.00 0.00 0.00 3.02
4525 5175 3.953612 TGTGACTTGACCTGCATTTTCTT 59.046 39.130 0.00 0.00 0.00 2.52
4538 5190 7.094248 CCCATACAGAATTTCAATGTGACTTGA 60.094 37.037 0.00 0.00 33.42 3.02
4602 5254 3.243724 CCACCCCCTCCATTTACAAAAA 58.756 45.455 0.00 0.00 0.00 1.94
4603 5255 2.180308 ACCACCCCCTCCATTTACAAAA 59.820 45.455 0.00 0.00 0.00 2.44
4604 5256 1.790157 ACCACCCCCTCCATTTACAAA 59.210 47.619 0.00 0.00 0.00 2.83
4605 5257 1.462426 ACCACCCCCTCCATTTACAA 58.538 50.000 0.00 0.00 0.00 2.41
4606 5258 1.917568 GTACCACCCCCTCCATTTACA 59.082 52.381 0.00 0.00 0.00 2.41
4607 5259 2.172082 GAGTACCACCCCCTCCATTTAC 59.828 54.545 0.00 0.00 0.00 2.01
4608 5260 2.225934 TGAGTACCACCCCCTCCATTTA 60.226 50.000 0.00 0.00 0.00 1.40
4609 5261 1.296002 GAGTACCACCCCCTCCATTT 58.704 55.000 0.00 0.00 0.00 2.32
4611 5263 0.620700 GTGAGTACCACCCCCTCCAT 60.621 60.000 3.79 0.00 39.86 3.41
4612 5264 1.229400 GTGAGTACCACCCCCTCCA 60.229 63.158 3.79 0.00 39.86 3.86
4614 5266 1.065418 CAATGTGAGTACCACCCCCTC 60.065 57.143 10.70 0.00 45.09 4.30
4615 5267 0.991920 CAATGTGAGTACCACCCCCT 59.008 55.000 10.70 0.00 45.09 4.79
4616 5268 0.679960 GCAATGTGAGTACCACCCCC 60.680 60.000 10.70 0.00 45.09 5.40
4617 5269 0.328258 AGCAATGTGAGTACCACCCC 59.672 55.000 10.70 0.11 45.09 4.95
4618 5270 1.003118 TCAGCAATGTGAGTACCACCC 59.997 52.381 10.70 0.37 45.09 4.61
4619 5271 2.076863 GTCAGCAATGTGAGTACCACC 58.923 52.381 10.70 0.00 45.09 4.61
4620 5272 2.766313 TGTCAGCAATGTGAGTACCAC 58.234 47.619 7.34 7.34 45.88 4.16
4622 5274 4.455533 TCATTTGTCAGCAATGTGAGTACC 59.544 41.667 0.00 0.00 34.18 3.34
4624 5276 4.154737 GCTCATTTGTCAGCAATGTGAGTA 59.845 41.667 16.81 0.00 42.84 2.59
4625 5277 3.057736 GCTCATTTGTCAGCAATGTGAGT 60.058 43.478 16.81 0.00 42.84 3.41
4628 5280 2.602878 GGCTCATTTGTCAGCAATGTG 58.397 47.619 0.00 0.00 37.38 3.21
4631 5283 1.470098 GTCGGCTCATTTGTCAGCAAT 59.530 47.619 0.00 0.00 37.38 3.56
4632 5284 0.874390 GTCGGCTCATTTGTCAGCAA 59.126 50.000 0.00 0.00 37.38 3.91
4633 5285 1.291184 CGTCGGCTCATTTGTCAGCA 61.291 55.000 0.00 0.00 37.38 4.41
4634 5286 1.291877 ACGTCGGCTCATTTGTCAGC 61.292 55.000 0.00 0.00 34.65 4.26
4635 5287 0.716108 GACGTCGGCTCATTTGTCAG 59.284 55.000 0.00 0.00 0.00 3.51
4637 5289 1.390463 GAAGACGTCGGCTCATTTGTC 59.610 52.381 10.46 0.00 0.00 3.18
4638 5290 1.270094 TGAAGACGTCGGCTCATTTGT 60.270 47.619 10.46 0.00 0.00 2.83
4640 5292 1.272490 TCTGAAGACGTCGGCTCATTT 59.728 47.619 10.46 0.00 31.99 2.32
4641 5293 0.888619 TCTGAAGACGTCGGCTCATT 59.111 50.000 10.46 0.00 31.99 2.57
4642 5294 0.171455 GTCTGAAGACGTCGGCTCAT 59.829 55.000 10.46 0.00 35.12 2.90
4643 5295 1.579932 GTCTGAAGACGTCGGCTCA 59.420 57.895 10.46 13.02 35.12 4.26
4644 5296 1.153997 GGTCTGAAGACGTCGGCTC 60.154 63.158 10.46 8.99 45.65 4.70
4645 5297 2.963371 GGTCTGAAGACGTCGGCT 59.037 61.111 10.46 0.00 45.65 5.52
4646 5298 2.504244 CGGTCTGAAGACGTCGGC 60.504 66.667 10.46 6.83 45.65 5.54
4647 5299 2.504244 GCGGTCTGAAGACGTCGG 60.504 66.667 10.46 2.36 45.65 4.79
4648 5300 2.504244 GGCGGTCTGAAGACGTCG 60.504 66.667 10.46 4.85 45.65 5.12
4649 5301 2.126031 GGGCGGTCTGAAGACGTC 60.126 66.667 7.70 7.70 45.65 4.34
4651 5303 4.452733 GGGGGCGGTCTGAAGACG 62.453 72.222 4.44 1.96 45.65 4.18
4666 5318 2.061578 GGTTTTATTGGGGCGGGGG 61.062 63.158 0.00 0.00 0.00 5.40
4667 5319 0.689412 ATGGTTTTATTGGGGCGGGG 60.689 55.000 0.00 0.00 0.00 5.73
4669 5321 0.463620 CCATGGTTTTATTGGGGCGG 59.536 55.000 2.57 0.00 0.00 6.13
4670 5322 0.179086 GCCATGGTTTTATTGGGGCG 60.179 55.000 14.67 0.00 0.00 6.13
4671 5323 0.908198 TGCCATGGTTTTATTGGGGC 59.092 50.000 14.67 0.00 40.29 5.80
4672 5324 3.710209 TTTGCCATGGTTTTATTGGGG 57.290 42.857 14.67 0.00 0.00 4.96
4673 5325 5.621781 GCATTTTTGCCATGGTTTTATTGGG 60.622 40.000 14.67 0.00 0.00 4.12
4674 5326 5.183522 AGCATTTTTGCCATGGTTTTATTGG 59.816 36.000 14.67 0.00 34.90 3.16
4675 5327 6.087522 CAGCATTTTTGCCATGGTTTTATTG 58.912 36.000 14.67 6.54 34.90 1.90
4676 5328 5.769162 ACAGCATTTTTGCCATGGTTTTATT 59.231 32.000 14.67 0.00 34.90 1.40
4677 5329 5.181622 CACAGCATTTTTGCCATGGTTTTAT 59.818 36.000 14.67 0.00 34.90 1.40
4678 5330 4.514441 CACAGCATTTTTGCCATGGTTTTA 59.486 37.500 14.67 0.00 34.90 1.52
4680 5332 2.879646 CACAGCATTTTTGCCATGGTTT 59.120 40.909 14.67 0.00 34.90 3.27
4681 5333 2.496111 CACAGCATTTTTGCCATGGTT 58.504 42.857 14.67 0.00 34.90 3.67
4696 5993 2.807045 CTGACTCGTCGCCACAGC 60.807 66.667 0.00 0.00 0.00 4.40
4697 5994 2.126307 CCTGACTCGTCGCCACAG 60.126 66.667 0.00 0.00 0.00 3.66
4698 5995 3.680786 CCCTGACTCGTCGCCACA 61.681 66.667 0.00 0.00 0.00 4.17
4705 6011 1.631388 TCTTCTCTCTCCCTGACTCGT 59.369 52.381 0.00 0.00 0.00 4.18
4723 6029 0.978146 CCATCTCTCCCGGTGGTTCT 60.978 60.000 0.00 0.00 0.00 3.01
4727 6033 3.164269 CCCCATCTCTCCCGGTGG 61.164 72.222 0.00 0.00 0.00 4.61
4728 6034 3.866582 GCCCCATCTCTCCCGGTG 61.867 72.222 0.00 0.00 0.00 4.94
4732 6038 3.917760 CGTCGCCCCATCTCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
4740 6046 4.308458 CAGTTCACCGTCGCCCCA 62.308 66.667 0.00 0.00 0.00 4.96
4744 6050 1.082756 CAAAGCAGTTCACCGTCGC 60.083 57.895 0.00 0.00 0.00 5.19
4745 6051 1.569493 CCAAAGCAGTTCACCGTCG 59.431 57.895 0.00 0.00 0.00 5.12
4746 6052 1.949257 CCCAAAGCAGTTCACCGTC 59.051 57.895 0.00 0.00 0.00 4.79
4789 6095 2.046604 GGAAACGGGCGTTAGGCT 60.047 61.111 0.00 0.00 42.94 4.58
4803 6109 1.153449 CAATAGACAGCGCGGGGAA 60.153 57.895 13.26 0.00 0.00 3.97
4809 6116 1.256376 CGTGACATCAATAGACAGCGC 59.744 52.381 0.00 0.00 0.00 5.92
4832 6139 1.968540 GCTGGCCACCTGTCAAGTC 60.969 63.158 0.00 0.00 0.00 3.01
4835 6142 2.203337 GTGCTGGCCACCTGTCAA 60.203 61.111 0.00 0.00 38.55 3.18
4836 6143 4.624364 CGTGCTGGCCACCTGTCA 62.624 66.667 0.00 0.00 41.53 3.58
4846 6153 1.071471 AGTTTCCTGACCGTGCTGG 59.929 57.895 0.00 0.00 46.41 4.85
4848 6155 1.071471 CCAGTTTCCTGACCGTGCT 59.929 57.895 0.00 0.00 41.50 4.40
4849 6156 0.818040 AACCAGTTTCCTGACCGTGC 60.818 55.000 0.00 0.00 41.50 5.34
4850 6157 2.536761 TAACCAGTTTCCTGACCGTG 57.463 50.000 0.00 0.00 41.50 4.94
4859 6167 4.611366 CGATTTGCTCGTTTAACCAGTTTC 59.389 41.667 0.00 0.00 42.56 2.78
4883 6191 1.909700 ACCAGGCACCACTAATTGTG 58.090 50.000 0.00 0.00 45.80 3.33
4888 6196 3.174779 TGTGTATACCAGGCACCACTAA 58.825 45.455 0.00 0.00 32.62 2.24
4889 6197 2.822697 TGTGTATACCAGGCACCACTA 58.177 47.619 0.00 0.00 32.62 2.74
4890 6198 1.651737 TGTGTATACCAGGCACCACT 58.348 50.000 0.00 0.00 32.62 4.00
4891 6199 2.356135 CTTGTGTATACCAGGCACCAC 58.644 52.381 0.00 0.00 32.62 4.16
4892 6200 1.339631 GCTTGTGTATACCAGGCACCA 60.340 52.381 17.57 0.00 32.62 4.17
4893 6201 1.379527 GCTTGTGTATACCAGGCACC 58.620 55.000 17.57 0.00 32.62 5.01
4894 6202 1.065418 AGGCTTGTGTATACCAGGCAC 60.065 52.381 21.35 14.34 44.55 5.01
4895 6203 1.209504 GAGGCTTGTGTATACCAGGCA 59.790 52.381 21.35 6.61 44.55 4.75
4896 6204 1.806623 CGAGGCTTGTGTATACCAGGC 60.807 57.143 15.47 15.47 43.08 4.85
4897 6205 1.754803 TCGAGGCTTGTGTATACCAGG 59.245 52.381 0.77 0.21 0.00 4.45
4898 6206 3.520290 TTCGAGGCTTGTGTATACCAG 57.480 47.619 0.77 0.00 0.00 4.00
4899 6207 3.259876 ACTTTCGAGGCTTGTGTATACCA 59.740 43.478 0.77 0.00 0.00 3.25
4900 6208 3.617263 CACTTTCGAGGCTTGTGTATACC 59.383 47.826 0.77 0.00 0.00 2.73
4901 6209 3.617263 CCACTTTCGAGGCTTGTGTATAC 59.383 47.826 0.77 0.00 0.00 1.47
4902 6210 3.259876 ACCACTTTCGAGGCTTGTGTATA 59.740 43.478 0.77 0.00 0.00 1.47
4903 6211 2.038557 ACCACTTTCGAGGCTTGTGTAT 59.961 45.455 0.77 0.00 0.00 2.29
4904 6212 1.414919 ACCACTTTCGAGGCTTGTGTA 59.585 47.619 0.77 0.00 0.00 2.90
4905 6213 0.180406 ACCACTTTCGAGGCTTGTGT 59.820 50.000 0.77 0.00 0.00 3.72
4906 6214 0.588252 CACCACTTTCGAGGCTTGTG 59.412 55.000 0.77 0.78 0.00 3.33
4907 6215 0.535102 CCACCACTTTCGAGGCTTGT 60.535 55.000 0.77 0.00 0.00 3.16
4908 6216 0.535102 ACCACCACTTTCGAGGCTTG 60.535 55.000 0.00 0.00 0.00 4.01
4909 6217 0.182775 AACCACCACTTTCGAGGCTT 59.817 50.000 0.00 0.00 0.00 4.35
4910 6218 0.182775 AAACCACCACTTTCGAGGCT 59.817 50.000 0.00 0.00 0.00 4.58
4911 6219 1.029681 AAAACCACCACTTTCGAGGC 58.970 50.000 0.00 0.00 0.00 4.70
4956 6264 2.772515 AGCTAGGGTATCAGGAAACCAC 59.227 50.000 0.00 0.00 37.51 4.16
4959 6267 3.039011 TGGAGCTAGGGTATCAGGAAAC 58.961 50.000 0.00 0.00 0.00 2.78
4963 6271 5.485353 TCATATTTGGAGCTAGGGTATCAGG 59.515 44.000 0.00 0.00 0.00 3.86
4973 6281 3.395607 AGGTGCCATCATATTTGGAGCTA 59.604 43.478 5.76 0.00 36.26 3.32
4977 6285 3.668141 ACAGGTGCCATCATATTTGGA 57.332 42.857 5.76 0.00 36.26 3.53
4978 6286 4.403432 AGAAACAGGTGCCATCATATTTGG 59.597 41.667 0.00 0.00 37.31 3.28
4980 6288 6.400568 CAAAGAAACAGGTGCCATCATATTT 58.599 36.000 0.00 0.00 0.00 1.40
4981 6289 5.105228 CCAAAGAAACAGGTGCCATCATATT 60.105 40.000 0.00 0.00 0.00 1.28
4982 6290 4.403432 CCAAAGAAACAGGTGCCATCATAT 59.597 41.667 0.00 0.00 0.00 1.78
4983 6291 3.763360 CCAAAGAAACAGGTGCCATCATA 59.237 43.478 0.00 0.00 0.00 2.15
4984 6292 2.564062 CCAAAGAAACAGGTGCCATCAT 59.436 45.455 0.00 0.00 0.00 2.45
4986 6294 1.963515 ACCAAAGAAACAGGTGCCATC 59.036 47.619 0.00 0.00 33.57 3.51
4987 6295 1.963515 GACCAAAGAAACAGGTGCCAT 59.036 47.619 0.00 0.00 35.36 4.40
4989 6297 0.673985 GGACCAAAGAAACAGGTGCC 59.326 55.000 0.00 0.00 37.75 5.01
4990 6298 1.398692 TGGACCAAAGAAACAGGTGC 58.601 50.000 0.00 0.00 43.20 5.01
4991 6299 4.464069 TTTTGGACCAAAGAAACAGGTG 57.536 40.909 18.78 0.00 34.72 4.00
4992 6300 5.692115 AATTTTGGACCAAAGAAACAGGT 57.308 34.783 18.78 0.00 34.72 4.00
4993 6301 6.362210 CAAATTTTGGACCAAAGAAACAGG 57.638 37.500 18.78 4.20 34.72 4.00
5026 6342 8.983702 TTAAACATGTAATATTACCCCTGTCC 57.016 34.615 20.35 0.00 32.72 4.02
5043 6359 8.863049 GTCAGCAGAATATTGGTTTTAAACATG 58.137 33.333 10.14 0.00 0.00 3.21
5057 6373 5.658634 TCCAAGAGTACTGTCAGCAGAATAT 59.341 40.000 0.00 0.00 45.28 1.28
5058 6374 5.016831 TCCAAGAGTACTGTCAGCAGAATA 58.983 41.667 0.00 0.00 45.28 1.75
5061 6377 2.876581 TCCAAGAGTACTGTCAGCAGA 58.123 47.619 0.00 0.00 45.28 4.26
5063 6379 3.834813 AGAATCCAAGAGTACTGTCAGCA 59.165 43.478 0.00 0.00 0.00 4.41
5064 6380 4.464069 AGAATCCAAGAGTACTGTCAGC 57.536 45.455 0.00 0.00 0.00 4.26
5066 6382 7.561356 TCATGATAGAATCCAAGAGTACTGTCA 59.439 37.037 0.00 0.00 32.27 3.58
5067 6383 7.946207 TCATGATAGAATCCAAGAGTACTGTC 58.054 38.462 0.00 0.00 0.00 3.51
5068 6384 7.904558 TCATGATAGAATCCAAGAGTACTGT 57.095 36.000 0.00 0.00 0.00 3.55
5089 6415 9.083781 TGGGATGGAGGGAATATATTTTATCAT 57.916 33.333 0.00 1.61 0.00 2.45
5102 6428 6.158695 GCTCTTATATTATGGGATGGAGGGAA 59.841 42.308 0.00 0.00 0.00 3.97
5104 6430 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
5105 6431 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
5106 6432 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
5108 6434 6.878923 TCAAACGCTCTTATATTATGGGATGG 59.121 38.462 0.00 0.00 0.00 3.51
5109 6435 7.387673 TGTCAAACGCTCTTATATTATGGGATG 59.612 37.037 0.00 0.00 0.00 3.51
5110 6436 7.387948 GTGTCAAACGCTCTTATATTATGGGAT 59.612 37.037 0.00 0.00 0.00 3.85
5111 6437 6.704493 GTGTCAAACGCTCTTATATTATGGGA 59.296 38.462 0.00 0.00 0.00 4.37
5112 6438 6.706270 AGTGTCAAACGCTCTTATATTATGGG 59.294 38.462 0.00 0.00 32.75 4.00
5113 6439 7.715265 AGTGTCAAACGCTCTTATATTATGG 57.285 36.000 0.00 0.00 32.75 2.74
5114 6440 8.428536 GCTAGTGTCAAACGCTCTTATATTATG 58.571 37.037 0.00 0.00 39.94 1.90
5115 6441 7.326305 CGCTAGTGTCAAACGCTCTTATATTAT 59.674 37.037 0.00 0.00 39.94 1.28
5116 6442 6.635641 CGCTAGTGTCAAACGCTCTTATATTA 59.364 38.462 0.00 0.00 39.94 0.98
5117 6443 5.459107 CGCTAGTGTCAAACGCTCTTATATT 59.541 40.000 0.00 0.00 39.94 1.28
5118 6444 4.976731 CGCTAGTGTCAAACGCTCTTATAT 59.023 41.667 0.00 0.00 39.94 0.86
5119 6445 4.142534 ACGCTAGTGTCAAACGCTCTTATA 60.143 41.667 2.24 0.00 39.94 0.98
5120 6446 3.179830 CGCTAGTGTCAAACGCTCTTAT 58.820 45.455 0.00 0.00 39.94 1.73
5121 6447 2.030540 ACGCTAGTGTCAAACGCTCTTA 60.031 45.455 2.24 0.00 39.94 2.10
5122 6448 1.269621 ACGCTAGTGTCAAACGCTCTT 60.270 47.619 2.24 0.00 39.94 2.85
5123 6449 0.314302 ACGCTAGTGTCAAACGCTCT 59.686 50.000 2.24 0.00 39.94 4.09
5124 6450 1.973138 TACGCTAGTGTCAAACGCTC 58.027 50.000 13.25 0.00 39.94 5.03
5125 6451 2.427232 TTACGCTAGTGTCAAACGCT 57.573 45.000 13.25 0.00 42.35 5.07
5126 6452 2.410730 ACATTACGCTAGTGTCAAACGC 59.589 45.455 13.25 0.00 0.00 4.84
5127 6453 4.227177 GACATTACGCTAGTGTCAAACG 57.773 45.455 13.25 0.00 42.77 3.60
5132 6458 5.070862 CGTTTTTGACATTACGCTAGTGTC 58.929 41.667 13.25 7.82 43.31 3.67
5133 6459 5.013861 CGTTTTTGACATTACGCTAGTGT 57.986 39.130 14.41 14.41 0.00 3.55
5151 6477 9.915629 CCTCTGTCTTATAATATAAGAGCGTTT 57.084 33.333 19.73 0.00 34.59 3.60
5152 6478 8.524487 CCCTCTGTCTTATAATATAAGAGCGTT 58.476 37.037 19.73 0.00 34.59 4.84
5153 6479 7.889073 TCCCTCTGTCTTATAATATAAGAGCGT 59.111 37.037 19.73 0.00 34.59 5.07
5154 6480 8.282455 TCCCTCTGTCTTATAATATAAGAGCG 57.718 38.462 19.73 14.33 34.59 5.03
5155 6481 9.250246 ACTCCCTCTGTCTTATAATATAAGAGC 57.750 37.037 19.73 15.21 34.59 4.09
5165 6491 8.954350 GCGTTTATATACTCCCTCTGTCTTATA 58.046 37.037 0.00 0.00 0.00 0.98
5166 6492 7.450634 TGCGTTTATATACTCCCTCTGTCTTAT 59.549 37.037 0.00 0.00 0.00 1.73
5167 6493 6.774170 TGCGTTTATATACTCCCTCTGTCTTA 59.226 38.462 0.00 0.00 0.00 2.10
5168 6494 5.597182 TGCGTTTATATACTCCCTCTGTCTT 59.403 40.000 0.00 0.00 0.00 3.01
5169 6495 5.138276 TGCGTTTATATACTCCCTCTGTCT 58.862 41.667 0.00 0.00 0.00 3.41
5170 6496 5.449107 TGCGTTTATATACTCCCTCTGTC 57.551 43.478 0.00 0.00 0.00 3.51
5171 6497 5.864418 TTGCGTTTATATACTCCCTCTGT 57.136 39.130 0.00 0.00 0.00 3.41
5172 6498 6.292919 GCTTTTGCGTTTATATACTCCCTCTG 60.293 42.308 0.00 0.00 34.86 3.35
5173 6499 5.758784 GCTTTTGCGTTTATATACTCCCTCT 59.241 40.000 0.00 0.00 34.86 3.69
5174 6500 5.986936 GCTTTTGCGTTTATATACTCCCTC 58.013 41.667 0.00 0.00 34.86 4.30
5193 6519 8.814038 AACTCCTATGAACTATGATTTGCTTT 57.186 30.769 0.00 0.00 0.00 3.51
5241 6574 3.004315 GGATTTTCTTTTCAGCGGTGTGA 59.996 43.478 15.22 6.41 0.00 3.58
5246 6579 3.084786 AGAGGGATTTTCTTTTCAGCGG 58.915 45.455 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.