Multiple sequence alignment - TraesCS6A01G199800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G199800 chr6A 100.000 9732 0 0 1 9732 317149944 317159675 0.000000e+00 17972.0
1 TraesCS6A01G199800 chr6A 96.486 313 9 1 7177 7489 317155884 317156194 5.210000e-142 516.0
2 TraesCS6A01G199800 chr6A 96.486 313 9 1 5941 6251 317157120 317157432 5.210000e-142 516.0
3 TraesCS6A01G199800 chr6A 98.222 225 4 0 9508 9732 317177474 317177698 2.550000e-105 394.0
4 TraesCS6A01G199800 chr6A 98.039 102 2 0 3999 4100 317153840 317153941 2.790000e-40 178.0
5 TraesCS6A01G199800 chr6A 98.039 102 2 0 3897 3998 317153942 317154043 2.790000e-40 178.0
6 TraesCS6A01G199800 chr6A 84.746 177 22 5 9560 9732 243047178 243047003 1.300000e-38 172.0
7 TraesCS6A01G199800 chr6A 78.261 276 39 15 4476 4750 317152978 317153233 3.640000e-34 158.0
8 TraesCS6A01G199800 chr6A 78.261 276 39 15 3035 3290 317154419 317154693 3.640000e-34 158.0
9 TraesCS6A01G199800 chr6B 96.589 5013 121 18 965 5952 374973970 374968983 0.000000e+00 8264.0
10 TraesCS6A01G199800 chr6B 95.615 1163 45 3 7489 8648 374968900 374967741 0.000000e+00 1860.0
11 TraesCS6A01G199800 chr6B 91.444 374 19 7 8719 9082 374967565 374967195 1.460000e-137 501.0
12 TraesCS6A01G199800 chr6B 93.370 181 12 0 6697 6877 640328903 640329083 1.610000e-67 268.0
13 TraesCS6A01G199800 chr6B 82.623 305 17 15 9216 9510 374967128 374966850 4.540000e-58 237.0
14 TraesCS6A01G199800 chr6B 98.039 102 2 0 3897 3998 374970920 374970819 2.790000e-40 178.0
15 TraesCS6A01G199800 chr6B 98.039 102 2 0 3999 4100 374971022 374970921 2.790000e-40 178.0
16 TraesCS6A01G199800 chr6B 78.623 276 38 11 4476 4750 374971896 374971641 7.820000e-36 163.0
17 TraesCS6A01G199800 chr6B 88.034 117 11 2 4499 4615 41441813 41441700 1.700000e-27 135.0
18 TraesCS6A01G199800 chr6B 93.827 81 5 0 5941 6021 50291054 50290974 1.330000e-23 122.0
19 TraesCS6A01G199800 chr6D 95.923 4439 124 27 370 4780 237812928 237817337 0.000000e+00 7142.0
20 TraesCS6A01G199800 chr6D 96.627 1601 45 7 7486 9082 237822608 237824203 0.000000e+00 2649.0
21 TraesCS6A01G199800 chr6D 98.636 1173 13 3 4777 5948 237821354 237822524 0.000000e+00 2074.0
22 TraesCS6A01G199800 chr6D 90.187 642 25 18 9079 9715 237824248 237824856 0.000000e+00 802.0
23 TraesCS6A01G199800 chr6D 87.626 396 39 9 473 864 354989036 354989425 1.490000e-122 451.0
24 TraesCS6A01G199800 chr6D 86.298 416 47 8 472 881 163328296 163327885 2.490000e-120 444.0
25 TraesCS6A01G199800 chr6D 92.718 206 14 1 4 209 457326593 457326389 7.390000e-76 296.0
26 TraesCS6A01G199800 chr6D 100.000 102 0 0 3897 3998 237816566 237816667 1.290000e-43 189.0
27 TraesCS6A01G199800 chr6D 83.957 187 23 6 9534 9715 197637527 197637711 1.300000e-38 172.0
28 TraesCS6A01G199800 chr6D 97.059 102 3 0 3999 4100 237816464 237816565 1.300000e-38 172.0
29 TraesCS6A01G199800 chr6D 78.986 276 36 13 4476 4750 237815588 237815842 1.680000e-37 169.0
30 TraesCS6A01G199800 chr6D 82.888 187 25 6 9534 9715 197645013 197645197 2.810000e-35 161.0
31 TraesCS6A01G199800 chr6D 93.069 101 6 1 9616 9715 73978937 73978837 7.880000e-31 147.0
32 TraesCS6A01G199800 chr6D 89.167 120 9 3 9616 9731 74129195 74129314 7.880000e-31 147.0
33 TraesCS6A01G199800 chr6D 90.179 112 8 2 9610 9721 378696947 378697055 1.020000e-29 143.0
34 TraesCS6A01G199800 chr6D 90.179 112 8 2 9610 9721 419819391 419819283 1.020000e-29 143.0
35 TraesCS6A01G199800 chr6D 87.302 126 13 2 9610 9732 171845725 171845850 3.660000e-29 141.0
36 TraesCS6A01G199800 chr6D 88.235 119 12 2 9616 9732 210530828 210530710 3.660000e-29 141.0
37 TraesCS6A01G199800 chr6D 85.841 113 10 4 4503 4615 25635531 25635425 2.220000e-21 115.0
38 TraesCS6A01G199800 chr6D 90.667 75 5 2 402 474 172136086 172136160 2.240000e-16 99.0
39 TraesCS6A01G199800 chr6D 91.045 67 5 1 409 475 355860392 355860457 1.350000e-13 89.8
40 TraesCS6A01G199800 chr4D 89.398 1462 92 31 5941 7388 351688505 351689917 0.000000e+00 1783.0
41 TraesCS6A01G199800 chr4D 91.186 885 64 9 6243 7118 289298402 289297523 0.000000e+00 1190.0
42 TraesCS6A01G199800 chr4D 91.763 777 57 3 6347 7118 289296998 289296224 0.000000e+00 1074.0
43 TraesCS6A01G199800 chr4D 90.138 507 38 9 6953 7447 351688276 351688782 0.000000e+00 649.0
44 TraesCS6A01G199800 chr4D 87.532 393 44 3 473 861 500006824 500007215 5.360000e-122 449.0
45 TraesCS6A01G199800 chr4D 96.098 205 8 0 6696 6900 215217437 215217641 1.570000e-87 335.0
46 TraesCS6A01G199800 chr4D 91.954 174 7 4 6953 7120 289298936 289298764 4.540000e-58 237.0
47 TraesCS6A01G199800 chr4D 86.730 211 16 5 5941 6150 351689718 351689917 3.540000e-54 224.0
48 TraesCS6A01G199800 chr4D 91.071 112 7 2 9610 9721 251678287 251678179 2.190000e-31 148.0
49 TraesCS6A01G199800 chr4D 84.173 139 14 7 6079 6209 238024169 238024031 2.850000e-25 128.0
50 TraesCS6A01G199800 chr5B 91.806 1257 80 12 6240 7480 522035615 522036864 0.000000e+00 1729.0
51 TraesCS6A01G199800 chr5B 86.682 428 50 3 2132 2552 192866414 192865987 1.480000e-127 468.0
52 TraesCS6A01G199800 chr5B 87.460 311 27 7 5941 6241 522036555 522036863 2.010000e-91 348.0
53 TraesCS6A01G199800 chr5B 91.429 70 4 2 408 475 534669727 534669796 2.890000e-15 95.3
54 TraesCS6A01G199800 chr3A 92.272 647 42 5 6232 6875 745454915 745454274 0.000000e+00 911.0
55 TraesCS6A01G199800 chr3A 86.842 570 53 16 6146 6699 744617489 744618052 1.390000e-172 617.0
56 TraesCS6A01G199800 chr3A 85.714 399 51 5 472 867 25996050 25995655 5.440000e-112 416.0
57 TraesCS6A01G199800 chr3A 85.642 397 53 2 473 867 716130121 716129727 1.960000e-111 414.0
58 TraesCS6A01G199800 chr4A 90.529 454 38 3 6246 6699 639017250 639017698 6.510000e-166 595.0
59 TraesCS6A01G199800 chr4A 85.647 425 53 4 2132 2549 521287964 521288387 3.230000e-119 440.0
60 TraesCS6A01G199800 chr4A 90.355 197 18 1 6697 6893 737824195 737824000 3.490000e-64 257.0
61 TraesCS6A01G199800 chr4A 87.273 165 15 3 6089 6251 625092745 625092905 6.000000e-42 183.0
62 TraesCS6A01G199800 chr2A 90.508 453 37 4 6247 6699 564074963 564075409 2.340000e-165 593.0
63 TraesCS6A01G199800 chr2A 80.592 608 61 28 6079 6680 559834907 559835463 5.440000e-112 416.0
64 TraesCS6A01G199800 chr2A 81.949 277 28 11 6089 6356 604999308 604999045 2.130000e-51 215.0
65 TraesCS6A01G199800 chr2A 86.957 161 17 4 9560 9718 279054696 279054854 2.790000e-40 178.0
66 TraesCS6A01G199800 chr2A 84.663 163 19 5 6090 6250 604998144 604997986 3.640000e-34 158.0
67 TraesCS6A01G199800 chr2A 92.537 67 3 2 410 474 698190965 698191031 2.890000e-15 95.3
68 TraesCS6A01G199800 chr2A 89.552 67 6 1 885 950 65998666 65998732 6.260000e-12 84.2
69 TraesCS6A01G199800 chr5A 90.308 454 38 4 6246 6699 26783545 26783992 3.030000e-164 590.0
70 TraesCS6A01G199800 chr5A 88.175 389 37 5 2133 2512 356500795 356500407 1.150000e-123 455.0
71 TraesCS6A01G199800 chr5A 92.381 210 16 0 2 211 320937312 320937521 5.710000e-77 300.0
72 TraesCS6A01G199800 chr1A 89.417 463 41 5 6240 6699 31815116 31815573 2.360000e-160 577.0
73 TraesCS6A01G199800 chr1A 89.147 129 10 3 9592 9718 147799639 147799765 3.640000e-34 158.0
74 TraesCS6A01G199800 chr1A 79.082 196 33 6 9496 9690 230195238 230195426 2.850000e-25 128.0
75 TraesCS6A01G199800 chr5D 87.150 428 48 3 2132 2552 152753749 152753322 6.840000e-131 479.0
76 TraesCS6A01G199800 chr5D 89.189 370 34 6 7084 7447 23109036 23108667 3.200000e-124 457.0
77 TraesCS6A01G199800 chr5D 89.189 370 32 8 7084 7447 23110167 23109800 1.150000e-123 455.0
78 TraesCS6A01G199800 chr5D 88.809 277 22 8 5941 6209 23110075 23109800 2.030000e-86 331.0
79 TraesCS6A01G199800 chr5D 87.726 277 26 7 5941 6209 23108943 23108667 5.670000e-82 316.0
80 TraesCS6A01G199800 chr5D 92.381 210 13 3 2 210 454029716 454029509 7.390000e-76 296.0
81 TraesCS6A01G199800 chr5D 85.714 161 20 3 9560 9718 169399541 169399382 6.050000e-37 167.0
82 TraesCS6A01G199800 chr5D 89.167 120 10 2 9616 9732 364075365 364075246 7.880000e-31 147.0
83 TraesCS6A01G199800 chr5D 81.921 177 25 6 9560 9732 169389431 169389258 1.020000e-29 143.0
84 TraesCS6A01G199800 chr2B 86.682 428 47 8 2132 2549 451827398 451827825 5.320000e-127 466.0
85 TraesCS6A01G199800 chr2B 87.234 94 8 2 4483 4575 323081504 323081594 4.810000e-18 104.0
86 TraesCS6A01G199800 chr2B 96.364 55 1 1 3040 3093 323081502 323081556 1.350000e-13 89.8
87 TraesCS6A01G199800 chr2B 85.484 62 8 1 870 930 23983079 23983140 8.160000e-06 63.9
88 TraesCS6A01G199800 chr2D 88.542 384 35 7 2132 2508 410410575 410410956 3.200000e-124 457.0
89 TraesCS6A01G199800 chr2D 93.237 207 14 0 2 208 246624139 246624345 1.230000e-78 305.0
90 TraesCS6A01G199800 chr2D 92.453 212 16 0 2 213 246550326 246550537 4.420000e-78 303.0
91 TraesCS6A01G199800 chr2D 92.381 210 16 0 2 211 489573288 489573079 5.710000e-77 300.0
92 TraesCS6A01G199800 chr7D 86.331 417 47 5 2132 2539 466053385 466053800 6.930000e-121 446.0
93 TraesCS6A01G199800 chr7D 87.467 375 42 4 473 843 596326247 596326620 2.510000e-115 427.0
94 TraesCS6A01G199800 chr7D 77.436 195 38 5 4893 5085 10550300 10550490 2.870000e-20 111.0
95 TraesCS6A01G199800 chr7D 86.250 80 9 2 398 475 525721146 525721067 1.740000e-12 86.1
96 TraesCS6A01G199800 chr4B 87.179 390 42 7 474 859 53162276 53162661 4.170000e-118 436.0
97 TraesCS6A01G199800 chr4B 91.848 184 14 1 6696 6879 647708425 647708243 1.250000e-63 255.0
98 TraesCS6A01G199800 chr4B 85.227 176 22 4 9560 9732 297583880 297584054 2.790000e-40 178.0
99 TraesCS6A01G199800 chr7A 86.041 394 47 8 472 861 283737839 283738228 5.440000e-112 416.0
100 TraesCS6A01G199800 chr7A 94.040 151 4 2 6953 7098 161725930 161725780 3.540000e-54 224.0
101 TraesCS6A01G199800 chr7A 87.898 157 17 2 9561 9715 280455379 280455223 6.000000e-42 183.0
102 TraesCS6A01G199800 chr7A 84.746 177 22 5 9560 9732 338810202 338810027 1.300000e-38 172.0
103 TraesCS6A01G199800 chr1D 92.823 209 14 1 1 209 452250370 452250577 1.590000e-77 302.0
104 TraesCS6A01G199800 chr1D 92.344 209 14 2 2 209 217293188 217292981 7.390000e-76 296.0
105 TraesCS6A01G199800 chr1D 90.957 188 12 4 6079 6263 395093617 395093432 2.100000e-61 248.0
106 TraesCS6A01G199800 chr1D 91.477 176 12 2 7317 7489 395093617 395093442 1.260000e-58 239.0
107 TraesCS6A01G199800 chr1D 88.557 201 16 6 7122 7320 412903176 412903371 4.540000e-58 237.0
108 TraesCS6A01G199800 chr1D 81.347 193 23 9 9530 9715 200241230 200241416 2.830000e-30 145.0
109 TraesCS6A01G199800 chr1D 90.566 106 10 0 9610 9715 30011296 30011401 3.660000e-29 141.0
110 TraesCS6A01G199800 chr1D 90.566 106 10 0 9610 9715 123146425 123146530 3.660000e-29 141.0
111 TraesCS6A01G199800 chr1D 81.319 182 25 8 9556 9732 271458812 271458989 1.320000e-28 139.0
112 TraesCS6A01G199800 chr1D 82.099 162 23 4 9559 9715 166806841 166806681 6.130000e-27 134.0
113 TraesCS6A01G199800 chr1D 81.481 162 23 5 9559 9715 166959961 166959802 1.030000e-24 126.0
114 TraesCS6A01G199800 chr1D 91.045 67 5 1 410 475 89757404 89757338 1.350000e-13 89.8
115 TraesCS6A01G199800 chr1D 91.803 61 5 0 7327 7387 481401940 481402000 1.740000e-12 86.1
116 TraesCS6A01G199800 chr3D 91.827 208 17 0 2 209 365175990 365175783 3.440000e-74 291.0
117 TraesCS6A01G199800 chr3D 86.624 157 19 2 9560 9715 49404789 49404634 1.300000e-38 172.0
118 TraesCS6A01G199800 chr3D 85.350 157 20 3 9560 9715 49397532 49397378 1.010000e-34 159.0
119 TraesCS6A01G199800 chrUn 92.353 170 11 1 7088 7257 79591372 79591205 3.510000e-59 241.0
120 TraesCS6A01G199800 chrUn 92.353 170 11 1 7088 7257 268081305 268081138 3.510000e-59 241.0
121 TraesCS6A01G199800 chrUn 90.179 112 8 2 9610 9721 91479171 91479063 1.020000e-29 143.0
122 TraesCS6A01G199800 chrUn 88.496 113 9 3 9610 9721 57874057 57874166 6.130000e-27 134.0
123 TraesCS6A01G199800 chrUn 88.496 113 9 3 9610 9721 314136450 314136559 6.130000e-27 134.0
124 TraesCS6A01G199800 chrUn 91.579 95 8 0 9621 9715 440696443 440696537 2.210000e-26 132.0
125 TraesCS6A01G199800 chrUn 91.579 95 8 0 9621 9715 440955050 440955144 2.210000e-26 132.0
126 TraesCS6A01G199800 chrUn 87.611 113 10 3 9610 9721 57895469 57895578 2.850000e-25 128.0
127 TraesCS6A01G199800 chrUn 79.000 200 28 10 9534 9725 25928044 25928237 3.690000e-24 124.0
128 TraesCS6A01G199800 chrUn 81.132 159 27 3 9558 9715 118657553 118657709 3.690000e-24 124.0
129 TraesCS6A01G199800 chrUn 93.827 81 5 0 5941 6021 79591285 79591205 1.330000e-23 122.0
130 TraesCS6A01G199800 chrUn 93.827 81 5 0 5941 6021 268081218 268081138 1.330000e-23 122.0
131 TraesCS6A01G199800 chrUn 93.651 63 4 0 412 474 96478222 96478284 2.890000e-15 95.3
132 TraesCS6A01G199800 chr3B 78.730 315 41 17 3042 3352 417495631 417495339 4.640000e-43 187.0
133 TraesCS6A01G199800 chr3B 85.246 122 18 0 210 331 523281687 523281566 1.030000e-24 126.0
134 TraesCS6A01G199800 chr3B 79.798 198 15 12 4483 4679 417495631 417495458 4.770000e-23 121.0
135 TraesCS6A01G199800 chr7B 94.118 85 4 1 7326 7409 427835243 427835159 2.850000e-25 128.0
136 TraesCS6A01G199800 chr7B 93.548 62 4 0 411 472 327430163 327430102 1.040000e-14 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G199800 chr6A 317149944 317159675 9731 False 17972.000000 17972 100.000000 1 9732 1 chr6A.!!$F1 9731
1 TraesCS6A01G199800 chr6A 317152978 317157432 4454 False 284.000000 516 90.928667 3035 7489 6 chr6A.!!$F3 4454
2 TraesCS6A01G199800 chr6B 374966850 374973970 7120 True 1625.857143 8264 91.567429 965 9510 7 chr6B.!!$R3 8545
3 TraesCS6A01G199800 chr6D 237812928 237817337 4409 False 1918.000000 7142 92.992000 370 4780 4 chr6D.!!$F9 4410
4 TraesCS6A01G199800 chr6D 237821354 237824856 3502 False 1841.666667 2649 95.150000 4777 9715 3 chr6D.!!$F10 4938
5 TraesCS6A01G199800 chr4D 351688276 351689917 1641 False 885.333333 1783 88.755333 5941 7447 3 chr4D.!!$F3 1506
6 TraesCS6A01G199800 chr4D 289296224 289298936 2712 True 833.666667 1190 91.634333 6243 7120 3 chr4D.!!$R3 877
7 TraesCS6A01G199800 chr5B 522035615 522036864 1249 False 1038.500000 1729 89.633000 5941 7480 2 chr5B.!!$F2 1539
8 TraesCS6A01G199800 chr3A 745454274 745454915 641 True 911.000000 911 92.272000 6232 6875 1 chr3A.!!$R3 643
9 TraesCS6A01G199800 chr3A 744617489 744618052 563 False 617.000000 617 86.842000 6146 6699 1 chr3A.!!$F1 553
10 TraesCS6A01G199800 chr2A 559834907 559835463 556 False 416.000000 416 80.592000 6079 6680 1 chr2A.!!$F3 601
11 TraesCS6A01G199800 chr5D 23108667 23110167 1500 True 389.750000 457 88.728250 5941 7447 4 chr5D.!!$R6 1506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.028110 GCGGTTCGAGATTTGGATGC 59.972 55.000 0.00 0.00 0.00 3.91 F
154 155 0.102663 CATGTGCACCACTTGTTGCA 59.897 50.000 15.69 0.00 35.64 4.08 F
156 157 0.108898 TGTGCACCACTTGTTGCAAC 60.109 50.000 22.83 22.83 39.10 4.17 F
263 264 0.168788 TTTGAAGCTGCACGCATAGC 59.831 50.000 0.00 0.00 42.61 2.97 F
844 849 0.687920 TTTGACCGGGTGCAGATGTA 59.312 50.000 3.30 0.00 0.00 2.29 F
1002 1013 2.037208 CCTTCCCGGCACCCATTT 59.963 61.111 0.00 0.00 0.00 2.32 F
1657 1674 2.287069 TGTTATTGTGGTTTCCGTTGCG 60.287 45.455 0.00 0.00 0.00 4.85 F
2602 2619 2.927477 ACGACAAGCATATGTTGTACCG 59.073 45.455 17.82 18.48 44.29 4.02 F
2863 2881 5.221048 GGACAATGTTGCACTCTTTTACACT 60.221 40.000 0.00 0.00 0.00 3.55 F
7710 9201 6.741992 TTGTAACTGATGGAATAAGTGCAG 57.258 37.500 0.00 0.00 36.88 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 1988 1.615424 GGCCTACACAGAGGGGGAA 60.615 63.158 0.00 0.00 37.06 3.97 R
2207 2224 2.694616 ATGTTGGCCAACTAAAGGGT 57.305 45.000 40.40 19.47 41.67 4.34 R
2231 2248 0.035534 ACCTGCGATGTTGTATGGCA 60.036 50.000 0.00 0.00 0.00 4.92 R
2412 2429 2.530701 CTGGTACCTCAGAAGGACACT 58.469 52.381 14.36 0.00 46.67 3.55 R
2672 2689 2.827921 AGAAACTTCACAATCCCCATGC 59.172 45.455 0.00 0.00 0.00 4.06 R
3026 3046 0.665835 TCACAACAATTGCCGACACC 59.334 50.000 5.05 0.00 0.00 4.16 R
3031 3051 2.126467 CAAGGTTCACAACAATTGCCG 58.874 47.619 5.05 0.00 0.00 5.69 R
7710 9201 1.559831 GGAATACCAATTTGCTGCGC 58.440 50.000 0.00 0.00 35.97 6.09 R
7786 9277 2.494471 TCCAATGAGAAAGCCTGCAATG 59.506 45.455 0.00 0.00 0.00 2.82 R
9437 11122 0.323451 GTGAAAATCGGGGAGCCCTT 60.323 55.000 5.38 0.00 42.67 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
25 26 1.153901 TCGACGCGAGGAATCCAAC 60.154 57.895 15.93 0.00 0.00 3.77
26 27 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
27 28 2.125673 ACGCGAGGAATCCAACGG 60.126 61.111 15.93 11.24 0.00 4.44
28 29 2.125673 CGCGAGGAATCCAACGGT 60.126 61.111 17.17 0.00 0.00 4.83
29 30 2.452813 CGCGAGGAATCCAACGGTG 61.453 63.158 17.17 0.00 0.00 4.94
30 31 1.079405 GCGAGGAATCCAACGGTGA 60.079 57.895 17.17 0.00 0.00 4.02
31 32 0.672401 GCGAGGAATCCAACGGTGAA 60.672 55.000 17.17 0.00 0.00 3.18
32 33 1.803334 CGAGGAATCCAACGGTGAAA 58.197 50.000 0.00 0.00 0.00 2.69
33 34 1.732259 CGAGGAATCCAACGGTGAAAG 59.268 52.381 0.00 0.00 0.00 2.62
34 35 1.468914 GAGGAATCCAACGGTGAAAGC 59.531 52.381 0.00 0.00 0.00 3.51
43 44 4.667420 GGTGAAAGCGGTTCGAGA 57.333 55.556 0.00 0.00 39.30 4.04
44 45 3.139029 GGTGAAAGCGGTTCGAGAT 57.861 52.632 0.00 0.00 39.30 2.75
45 46 1.439679 GGTGAAAGCGGTTCGAGATT 58.560 50.000 0.00 0.00 39.30 2.40
48 49 1.804151 TGAAAGCGGTTCGAGATTTGG 59.196 47.619 0.00 0.00 39.30 3.28
49 50 2.073816 GAAAGCGGTTCGAGATTTGGA 58.926 47.619 0.00 0.00 0.00 3.53
52 53 0.028110 GCGGTTCGAGATTTGGATGC 59.972 55.000 0.00 0.00 0.00 3.91
54 55 1.062587 CGGTTCGAGATTTGGATGCAC 59.937 52.381 0.00 0.00 0.00 4.57
56 57 1.062587 GTTCGAGATTTGGATGCACGG 59.937 52.381 0.00 0.00 0.00 4.94
58 59 1.086696 CGAGATTTGGATGCACGGTT 58.913 50.000 0.00 0.00 0.00 4.44
60 61 2.728846 CGAGATTTGGATGCACGGTTTG 60.729 50.000 0.00 0.00 0.00 2.93
63 64 1.974265 TTTGGATGCACGGTTTGAGA 58.026 45.000 0.00 0.00 0.00 3.27
65 66 0.684535 TGGATGCACGGTTTGAGAGA 59.315 50.000 0.00 0.00 0.00 3.10
66 67 1.278985 TGGATGCACGGTTTGAGAGAT 59.721 47.619 0.00 0.00 0.00 2.75
67 68 2.499693 TGGATGCACGGTTTGAGAGATA 59.500 45.455 0.00 0.00 0.00 1.98
68 69 3.055458 TGGATGCACGGTTTGAGAGATAA 60.055 43.478 0.00 0.00 0.00 1.75
69 70 3.938963 GGATGCACGGTTTGAGAGATAAA 59.061 43.478 0.00 0.00 0.00 1.40
70 71 4.394920 GGATGCACGGTTTGAGAGATAAAA 59.605 41.667 0.00 0.00 0.00 1.52
71 72 5.066505 GGATGCACGGTTTGAGAGATAAAAT 59.933 40.000 0.00 0.00 0.00 1.82
72 73 5.295431 TGCACGGTTTGAGAGATAAAATG 57.705 39.130 0.00 0.00 0.00 2.32
73 74 4.759693 TGCACGGTTTGAGAGATAAAATGT 59.240 37.500 0.00 0.00 0.00 2.71
74 75 5.240623 TGCACGGTTTGAGAGATAAAATGTT 59.759 36.000 0.00 0.00 0.00 2.71
75 76 6.149633 GCACGGTTTGAGAGATAAAATGTTT 58.850 36.000 0.00 0.00 0.00 2.83
78 79 7.860373 CACGGTTTGAGAGATAAAATGTTTTGA 59.140 33.333 1.16 0.00 0.00 2.69
79 80 8.410141 ACGGTTTGAGAGATAAAATGTTTTGAA 58.590 29.630 1.16 0.00 0.00 2.69
80 81 9.410556 CGGTTTGAGAGATAAAATGTTTTGAAT 57.589 29.630 1.16 0.00 0.00 2.57
119 120 4.174305 AAAAAGTCCCAGGTGGCG 57.826 55.556 0.00 0.00 0.00 5.69
120 121 1.534697 AAAAAGTCCCAGGTGGCGA 59.465 52.632 0.00 0.00 0.00 5.54
122 123 1.990160 AAAAGTCCCAGGTGGCGACA 61.990 55.000 15.71 0.00 37.65 4.35
123 124 1.990160 AAAGTCCCAGGTGGCGACAA 61.990 55.000 15.71 0.00 46.06 3.18
124 125 2.358737 GTCCCAGGTGGCGACAAG 60.359 66.667 0.00 0.00 46.06 3.16
125 126 2.847234 TCCCAGGTGGCGACAAGT 60.847 61.111 0.00 0.00 46.06 3.16
127 128 2.669569 CCAGGTGGCGACAAGTGG 60.670 66.667 5.76 5.76 46.06 4.00
128 129 3.357079 CAGGTGGCGACAAGTGGC 61.357 66.667 0.00 0.00 46.06 5.01
154 155 0.102663 CATGTGCACCACTTGTTGCA 59.897 50.000 15.69 0.00 35.64 4.08
156 157 0.108898 TGTGCACCACTTGTTGCAAC 60.109 50.000 22.83 22.83 39.10 4.17
157 158 0.173255 GTGCACCACTTGTTGCAACT 59.827 50.000 28.61 7.59 39.10 3.16
158 159 1.403679 GTGCACCACTTGTTGCAACTA 59.596 47.619 28.61 20.98 39.10 2.24
159 160 2.095461 TGCACCACTTGTTGCAACTAA 58.905 42.857 28.61 19.30 34.08 2.24
161 162 2.543653 GCACCACTTGTTGCAACTAAGG 60.544 50.000 28.95 25.68 0.00 2.69
163 164 2.092103 ACCACTTGTTGCAACTAAGGGA 60.092 45.455 29.63 11.83 0.00 4.20
164 165 2.955660 CCACTTGTTGCAACTAAGGGAA 59.044 45.455 29.63 17.12 0.00 3.97
166 167 4.039124 CCACTTGTTGCAACTAAGGGAATT 59.961 41.667 29.63 15.40 0.00 2.17
167 168 4.984161 CACTTGTTGCAACTAAGGGAATTG 59.016 41.667 28.95 20.11 0.00 2.32
169 170 3.838565 TGTTGCAACTAAGGGAATTGGA 58.161 40.909 28.61 2.21 0.00 3.53
171 172 3.806949 TGCAACTAAGGGAATTGGAGT 57.193 42.857 0.00 0.00 0.00 3.85
172 173 3.420893 TGCAACTAAGGGAATTGGAGTG 58.579 45.455 0.00 0.00 0.00 3.51
173 174 3.073798 TGCAACTAAGGGAATTGGAGTGA 59.926 43.478 0.00 0.00 0.00 3.41
176 177 5.749462 CAACTAAGGGAATTGGAGTGATCT 58.251 41.667 0.00 0.00 0.00 2.75
180 181 3.359950 AGGGAATTGGAGTGATCTTTGC 58.640 45.455 0.00 0.00 0.00 3.68
182 183 3.511146 GGGAATTGGAGTGATCTTTGCAA 59.489 43.478 0.00 0.00 0.00 4.08
183 184 4.488879 GGAATTGGAGTGATCTTTGCAAC 58.511 43.478 0.00 0.00 0.00 4.17
185 186 5.509501 GGAATTGGAGTGATCTTTGCAACAA 60.510 40.000 0.00 0.00 0.00 2.83
186 187 4.572985 TTGGAGTGATCTTTGCAACAAG 57.427 40.909 0.00 0.00 0.00 3.16
187 188 3.554934 TGGAGTGATCTTTGCAACAAGT 58.445 40.909 0.00 0.00 0.00 3.16
188 189 4.713553 TGGAGTGATCTTTGCAACAAGTA 58.286 39.130 0.00 0.00 0.00 2.24
191 192 5.106908 GGAGTGATCTTTGCAACAAGTACTC 60.107 44.000 17.46 17.46 0.00 2.59
192 193 4.757149 AGTGATCTTTGCAACAAGTACTCC 59.243 41.667 0.00 0.00 0.00 3.85
194 195 5.239525 GTGATCTTTGCAACAAGTACTCCTT 59.760 40.000 0.00 0.00 0.00 3.36
195 196 6.426937 GTGATCTTTGCAACAAGTACTCCTTA 59.573 38.462 0.00 0.00 0.00 2.69
197 198 7.665559 TGATCTTTGCAACAAGTACTCCTTAAT 59.334 33.333 0.00 0.00 0.00 1.40
198 199 7.817418 TCTTTGCAACAAGTACTCCTTAATT 57.183 32.000 0.00 0.00 0.00 1.40
199 200 8.911918 TCTTTGCAACAAGTACTCCTTAATTA 57.088 30.769 0.00 0.00 0.00 1.40
200 201 8.999431 TCTTTGCAACAAGTACTCCTTAATTAG 58.001 33.333 0.00 0.00 0.00 1.73
201 202 8.685838 TTTGCAACAAGTACTCCTTAATTAGT 57.314 30.769 0.00 0.00 0.00 2.24
203 204 7.446769 TGCAACAAGTACTCCTTAATTAGTGA 58.553 34.615 0.00 0.00 0.00 3.41
204 205 8.100791 TGCAACAAGTACTCCTTAATTAGTGAT 58.899 33.333 0.00 0.00 0.00 3.06
205 206 8.947115 GCAACAAGTACTCCTTAATTAGTGATT 58.053 33.333 0.00 0.00 0.00 2.57
208 209 9.367444 ACAAGTACTCCTTAATTAGTGATTTCG 57.633 33.333 0.00 0.00 0.00 3.46
211 212 5.123936 ACTCCTTAATTAGTGATTTCGGCC 58.876 41.667 0.00 0.00 0.00 6.13
216 217 2.341846 TTAGTGATTTCGGCCATCCC 57.658 50.000 2.24 0.00 0.00 3.85
227 228 2.537560 GCCATCCCGCATCAGAACG 61.538 63.158 0.00 0.00 0.00 3.95
232 233 4.521075 CCGCATCAGAACGGTCAT 57.479 55.556 1.87 0.00 44.46 3.06
233 234 2.009108 CCGCATCAGAACGGTCATG 58.991 57.895 1.87 0.00 44.46 3.07
234 235 0.740868 CCGCATCAGAACGGTCATGT 60.741 55.000 1.87 0.00 44.46 3.21
235 236 0.371301 CGCATCAGAACGGTCATGTG 59.629 55.000 1.87 1.06 0.00 3.21
236 237 1.442769 GCATCAGAACGGTCATGTGT 58.557 50.000 1.87 0.00 0.00 3.72
237 238 2.616960 GCATCAGAACGGTCATGTGTA 58.383 47.619 1.87 0.00 0.00 2.90
239 240 3.676049 GCATCAGAACGGTCATGTGTAGA 60.676 47.826 1.87 0.00 0.00 2.59
240 241 4.686972 CATCAGAACGGTCATGTGTAGAT 58.313 43.478 1.87 0.00 0.00 1.98
242 243 5.147330 TCAGAACGGTCATGTGTAGATTT 57.853 39.130 1.87 0.00 0.00 2.17
243 244 5.168569 TCAGAACGGTCATGTGTAGATTTC 58.831 41.667 1.87 0.00 0.00 2.17
245 246 5.639506 CAGAACGGTCATGTGTAGATTTCTT 59.360 40.000 1.87 0.00 0.00 2.52
246 247 6.147821 CAGAACGGTCATGTGTAGATTTCTTT 59.852 38.462 1.87 0.00 0.00 2.52
249 250 5.995282 ACGGTCATGTGTAGATTTCTTTGAA 59.005 36.000 0.00 0.00 0.00 2.69
250 251 6.147821 ACGGTCATGTGTAGATTTCTTTGAAG 59.852 38.462 0.00 0.00 0.00 3.02
251 252 6.317857 GGTCATGTGTAGATTTCTTTGAAGC 58.682 40.000 0.00 0.00 0.00 3.86
255 256 4.821260 TGTGTAGATTTCTTTGAAGCTGCA 59.179 37.500 1.02 0.00 35.75 4.41
256 257 5.149977 GTGTAGATTTCTTTGAAGCTGCAC 58.850 41.667 0.00 7.99 45.95 4.57
257 258 3.549299 AGATTTCTTTGAAGCTGCACG 57.451 42.857 0.00 0.00 0.00 5.34
259 260 0.737804 TTTCTTTGAAGCTGCACGCA 59.262 45.000 0.00 0.00 42.61 5.24
260 261 0.953727 TTCTTTGAAGCTGCACGCAT 59.046 45.000 0.00 0.00 42.61 4.73
261 262 1.807139 TCTTTGAAGCTGCACGCATA 58.193 45.000 0.00 0.00 42.61 3.14
262 263 1.733912 TCTTTGAAGCTGCACGCATAG 59.266 47.619 0.00 1.87 42.61 2.23
263 264 0.168788 TTTGAAGCTGCACGCATAGC 59.831 50.000 0.00 0.00 42.61 2.97
275 276 3.280920 GCATAGCGAGTGGAAGGAG 57.719 57.895 0.00 0.00 0.00 3.69
276 277 0.878086 GCATAGCGAGTGGAAGGAGC 60.878 60.000 0.00 0.00 0.00 4.70
278 279 1.403687 ATAGCGAGTGGAAGGAGCCC 61.404 60.000 0.00 0.00 0.00 5.19
279 280 4.475135 GCGAGTGGAAGGAGCCCC 62.475 72.222 0.00 0.00 0.00 5.80
297 298 2.764010 CCCCTTAGGCCCAATTTAACAC 59.236 50.000 0.00 0.00 0.00 3.32
298 299 2.764010 CCCTTAGGCCCAATTTAACACC 59.236 50.000 0.00 0.00 0.00 4.16
299 300 3.436243 CCTTAGGCCCAATTTAACACCA 58.564 45.455 0.00 0.00 0.00 4.17
301 302 2.990740 AGGCCCAATTTAACACCAGA 57.009 45.000 0.00 0.00 0.00 3.86
302 303 3.252554 AGGCCCAATTTAACACCAGAA 57.747 42.857 0.00 0.00 0.00 3.02
303 304 3.165071 AGGCCCAATTTAACACCAGAAG 58.835 45.455 0.00 0.00 0.00 2.85
307 308 3.056607 CCCAATTTAACACCAGAAGGCAG 60.057 47.826 0.00 0.00 39.06 4.85
308 309 3.826157 CCAATTTAACACCAGAAGGCAGA 59.174 43.478 0.00 0.00 39.06 4.26
309 310 4.280677 CCAATTTAACACCAGAAGGCAGAA 59.719 41.667 0.00 0.00 39.06 3.02
310 311 5.221422 CCAATTTAACACCAGAAGGCAGAAA 60.221 40.000 0.00 0.00 39.06 2.52
311 312 6.458210 CAATTTAACACCAGAAGGCAGAAAT 58.542 36.000 0.00 0.00 39.06 2.17
312 313 6.670695 ATTTAACACCAGAAGGCAGAAATT 57.329 33.333 0.00 0.00 39.06 1.82
313 314 5.452078 TTAACACCAGAAGGCAGAAATTG 57.548 39.130 0.00 0.00 39.06 2.32
314 315 2.949447 ACACCAGAAGGCAGAAATTGT 58.051 42.857 0.00 0.00 39.06 2.71
315 316 3.299503 ACACCAGAAGGCAGAAATTGTT 58.700 40.909 0.00 0.00 39.06 2.83
316 317 4.469657 ACACCAGAAGGCAGAAATTGTTA 58.530 39.130 0.00 0.00 39.06 2.41
318 319 3.826729 ACCAGAAGGCAGAAATTGTTACC 59.173 43.478 0.00 0.00 39.06 2.85
321 322 2.871096 AGGCAGAAATTGTTACCGGA 57.129 45.000 9.46 0.00 0.00 5.14
322 323 2.711542 AGGCAGAAATTGTTACCGGAG 58.288 47.619 9.46 0.00 0.00 4.63
323 324 1.132453 GGCAGAAATTGTTACCGGAGC 59.868 52.381 9.46 0.00 0.00 4.70
326 327 3.821841 CAGAAATTGTTACCGGAGCAAC 58.178 45.455 9.46 9.95 0.00 4.17
327 328 2.482721 AGAAATTGTTACCGGAGCAACG 59.517 45.455 9.46 0.00 0.00 4.10
336 337 2.125350 GGAGCAACGGCCTGAGAG 60.125 66.667 0.00 0.00 42.56 3.20
337 338 2.125350 GAGCAACGGCCTGAGAGG 60.125 66.667 0.00 0.00 42.56 3.69
339 340 4.021925 GCAACGGCCTGAGAGGGT 62.022 66.667 0.00 0.00 35.37 4.34
340 341 2.750350 CAACGGCCTGAGAGGGTT 59.250 61.111 0.00 0.00 35.37 4.11
341 342 1.672356 CAACGGCCTGAGAGGGTTG 60.672 63.158 0.00 1.70 35.37 3.77
344 345 2.592993 CGGCCTGAGAGGGTTGGAA 61.593 63.158 0.00 0.00 35.37 3.53
345 346 1.767692 GGCCTGAGAGGGTTGGAAA 59.232 57.895 0.00 0.00 35.37 3.13
349 350 2.753168 GCCTGAGAGGGTTGGAAAGTTT 60.753 50.000 0.00 0.00 35.37 2.66
350 351 3.149981 CCTGAGAGGGTTGGAAAGTTTC 58.850 50.000 7.09 7.09 0.00 2.78
351 352 3.435026 CCTGAGAGGGTTGGAAAGTTTCA 60.435 47.826 17.16 1.24 0.00 2.69
352 353 3.551846 TGAGAGGGTTGGAAAGTTTCAC 58.448 45.455 17.16 7.62 0.00 3.18
353 354 3.053991 TGAGAGGGTTGGAAAGTTTCACA 60.054 43.478 17.16 9.78 0.00 3.58
354 355 3.951680 GAGAGGGTTGGAAAGTTTCACAA 59.048 43.478 17.16 14.56 0.00 3.33
355 356 4.546674 AGAGGGTTGGAAAGTTTCACAAT 58.453 39.130 17.16 4.96 0.00 2.71
356 357 4.962362 AGAGGGTTGGAAAGTTTCACAATT 59.038 37.500 17.16 8.69 0.00 2.32
357 358 5.425217 AGAGGGTTGGAAAGTTTCACAATTT 59.575 36.000 17.16 8.42 0.00 1.82
358 359 6.061022 AGGGTTGGAAAGTTTCACAATTTT 57.939 33.333 17.16 6.19 0.00 1.82
360 361 7.625469 AGGGTTGGAAAGTTTCACAATTTTAA 58.375 30.769 17.16 0.00 0.00 1.52
362 363 9.549078 GGGTTGGAAAGTTTCACAATTTTAATA 57.451 29.630 17.16 0.00 0.00 0.98
390 391 7.844009 TCTAAATGGTAAAACCGAGTAGTGAT 58.156 34.615 0.00 0.00 42.58 3.06
398 399 9.754382 GGTAAAACCGAGTAGTGATCATAAATA 57.246 33.333 0.00 0.00 0.00 1.40
439 442 7.628501 AATCCCTCCGTTCCTAAATATAAGT 57.371 36.000 0.00 0.00 0.00 2.24
440 443 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
445 448 9.043079 CCTCCGTTCCTAAATATAAGTCTTTTC 57.957 37.037 0.00 0.00 0.00 2.29
448 451 9.379791 CCGTTCCTAAATATAAGTCTTTTCAGT 57.620 33.333 0.00 0.00 0.00 3.41
500 503 2.094675 CGTTTTGGCTTCCAGGATCAT 58.905 47.619 0.00 0.00 33.81 2.45
503 506 4.526970 GTTTTGGCTTCCAGGATCATCTA 58.473 43.478 0.00 0.00 33.81 1.98
508 511 2.703007 GCTTCCAGGATCATCTACACCT 59.297 50.000 0.00 0.00 0.00 4.00
512 515 3.118261 TCCAGGATCATCTACACCTTTGC 60.118 47.826 0.00 0.00 0.00 3.68
588 592 3.716353 TGGCATGGTAGATAATCTGGTGT 59.284 43.478 0.00 0.00 0.00 4.16
592 596 5.590259 GCATGGTAGATAATCTGGTGTTTGT 59.410 40.000 0.00 0.00 0.00 2.83
599 603 0.951558 ATCTGGTGTTTGTTGTCCGC 59.048 50.000 0.00 0.00 0.00 5.54
637 641 4.727507 TTTGGACATCTGAGTAGCTCTC 57.272 45.455 0.00 0.00 43.03 3.20
639 643 2.092914 TGGACATCTGAGTAGCTCTCGA 60.093 50.000 0.00 0.29 45.46 4.04
641 645 2.939756 GACATCTGAGTAGCTCTCGACA 59.060 50.000 0.00 0.00 45.46 4.35
675 679 9.357652 CAAATTTGGGATCTGTTAAATAGTGTG 57.642 33.333 10.49 0.00 0.00 3.82
676 680 8.650143 AATTTGGGATCTGTTAAATAGTGTGT 57.350 30.769 0.00 0.00 0.00 3.72
681 685 7.504238 TGGGATCTGTTAAATAGTGTGTTGTTT 59.496 33.333 0.00 0.00 0.00 2.83
696 700 9.944376 AGTGTGTTGTTTATATACTGTTCTGAT 57.056 29.630 0.00 0.00 0.00 2.90
740 744 1.997606 GCTGCTCAAATGTCCAAATGC 59.002 47.619 0.00 0.00 0.00 3.56
764 768 1.474077 GAAATTTGGAGCGCACCTCAT 59.526 47.619 24.52 13.21 42.62 2.90
788 792 8.786898 CATACACCAAATTATCTACCTTCCATG 58.213 37.037 0.00 0.00 0.00 3.66
803 807 7.610580 ACCTTCCATGAAAAAGTTGGATTTA 57.389 32.000 0.00 0.00 0.00 1.40
804 808 8.028652 ACCTTCCATGAAAAAGTTGGATTTAA 57.971 30.769 0.00 0.00 0.00 1.52
805 809 8.490311 ACCTTCCATGAAAAAGTTGGATTTAAA 58.510 29.630 0.00 0.00 0.00 1.52
806 810 9.336171 CCTTCCATGAAAAAGTTGGATTTAAAA 57.664 29.630 0.00 0.00 0.00 1.52
844 849 0.687920 TTTGACCGGGTGCAGATGTA 59.312 50.000 3.30 0.00 0.00 2.29
861 866 2.115427 TGTATCCGGGCTCAGAATTGA 58.885 47.619 0.00 0.00 0.00 2.57
864 869 2.332063 TCCGGGCTCAGAATTGAATC 57.668 50.000 0.00 0.00 31.69 2.52
873 884 8.824781 CGGGCTCAGAATTGAATCTTATATATG 58.175 37.037 0.00 0.00 31.69 1.78
874 885 9.896645 GGGCTCAGAATTGAATCTTATATATGA 57.103 33.333 0.00 1.15 31.69 2.15
919 930 6.670695 AGGGTAATTCACTCATTTTGCTTT 57.329 33.333 0.00 0.00 0.00 3.51
920 931 7.775053 AGGGTAATTCACTCATTTTGCTTTA 57.225 32.000 0.00 0.00 0.00 1.85
937 948 8.572828 TTTGCTTTATATGTAATTCGCATTGG 57.427 30.769 1.51 0.00 0.00 3.16
946 957 9.725019 ATATGTAATTCGCATTGGAATCTCTAA 57.275 29.630 1.51 0.00 35.65 2.10
1002 1013 2.037208 CCTTCCCGGCACCCATTT 59.963 61.111 0.00 0.00 0.00 2.32
1069 1080 2.818130 TCATTTGCCTTTGGTCTTGC 57.182 45.000 0.00 0.00 0.00 4.01
1083 1094 2.799412 GGTCTTGCGATGAGATGATGAC 59.201 50.000 0.00 0.00 0.00 3.06
1303 1320 4.162690 GTCATCGCCTTCCGCCCT 62.163 66.667 0.00 0.00 36.73 5.19
1657 1674 2.287069 TGTTATTGTGGTTTCCGTTGCG 60.287 45.455 0.00 0.00 0.00 4.85
1842 1859 4.469945 ACTACTAGAAATGCAACTGGCCTA 59.530 41.667 3.32 0.00 43.89 3.93
1843 1860 4.301072 ACTAGAAATGCAACTGGCCTAA 57.699 40.909 3.32 0.00 43.89 2.69
2207 2224 5.935789 GCTACACCTAACTTTGGACATGTTA 59.064 40.000 0.00 0.00 0.00 2.41
2231 2248 3.573967 CCTTTAGTTGGCCAACATTCAGT 59.426 43.478 41.88 26.54 43.47 3.41
2412 2429 6.171921 CAGCATTGACCCCAAATATTGAAAA 58.828 36.000 0.00 0.00 35.67 2.29
2602 2619 2.927477 ACGACAAGCATATGTTGTACCG 59.073 45.455 17.82 18.48 44.29 4.02
2672 2689 6.532657 GCAAACATTCTACAATTGGAGATTGG 59.467 38.462 31.63 21.87 33.56 3.16
2726 2743 7.872993 TCTGTACAGACTTGAGAACCAATAAAG 59.127 37.037 21.74 0.00 31.09 1.85
2733 2750 7.337942 AGACTTGAGAACCAATAAAGCCATTAG 59.662 37.037 0.00 0.00 33.68 1.73
2745 2762 9.330063 CAATAAAGCCATTAGTCTAGTGATGAA 57.670 33.333 4.02 0.00 0.00 2.57
2863 2881 5.221048 GGACAATGTTGCACTCTTTTACACT 60.221 40.000 0.00 0.00 0.00 3.55
3031 3051 7.820044 TGTTAAATTTCAAGTGTTTGGTGTC 57.180 32.000 0.00 0.00 34.97 3.67
7710 9201 6.741992 TTGTAACTGATGGAATAAGTGCAG 57.258 37.500 0.00 0.00 36.88 4.41
7786 9277 8.138074 GGATTTAATCTGCTTTTATTCCTGGTC 58.862 37.037 4.87 0.00 0.00 4.02
8248 9739 3.998672 GTCCGTCGAGGGGCACAA 61.999 66.667 23.20 0.84 41.52 3.33
8252 9743 0.179056 CCGTCGAGGGGCACAATATT 60.179 55.000 16.51 0.00 35.97 1.28
8280 9771 1.004277 TCCCGTAGAAGCAAGCCAAAT 59.996 47.619 0.00 0.00 0.00 2.32
8382 9873 0.112995 AGCATCAGTGGCCAAGGAAA 59.887 50.000 7.24 0.00 0.00 3.13
8507 9998 2.167487 AGACGGAGGAAGAAGAATGAGC 59.833 50.000 0.00 0.00 0.00 4.26
8686 10312 3.243301 GGTAATAGATCGTCACGCTTCCA 60.243 47.826 0.00 0.00 0.00 3.53
8696 10322 0.725686 CACGCTTCCATGCTGAGAAG 59.274 55.000 5.38 5.38 41.99 2.85
8714 10340 3.262915 AGAAGCTAACTGTTGATGCCTCT 59.737 43.478 2.69 6.77 0.00 3.69
8717 10343 3.008375 AGCTAACTGTTGATGCCTCTCAA 59.992 43.478 2.69 0.00 32.84 3.02
8723 10349 4.202357 ACTGTTGATGCCTCTCAAGTGTTA 60.202 41.667 0.00 0.00 35.88 2.41
8724 10350 4.910195 TGTTGATGCCTCTCAAGTGTTAT 58.090 39.130 0.00 0.00 35.88 1.89
8929 10556 7.933560 TCACATAATTTTTAAACAATCACGCG 58.066 30.769 3.53 3.53 0.00 6.01
8985 10621 2.228138 AACCGACGTGTACACATGTT 57.772 45.000 24.98 17.28 45.32 2.71
8994 10630 0.165944 GTACACATGTTGCTGGCGTC 59.834 55.000 0.00 0.00 0.00 5.19
9009 10645 2.626780 CGTCTGTGCCGTCCTCTCA 61.627 63.158 0.00 0.00 0.00 3.27
9035 10671 1.228367 GCAGCCCCAGGATGTATGG 60.228 63.158 0.28 0.00 41.69 2.74
9040 10676 0.106708 CCCCAGGATGTATGGTCACG 59.893 60.000 0.00 0.00 35.96 4.35
9110 10794 3.330701 TCAACCTGGATTCTATATGCCCC 59.669 47.826 0.00 0.00 0.00 5.80
9143 10827 3.384146 TGAGTCCTTTTGCTTTGCATGAA 59.616 39.130 0.00 0.00 38.76 2.57
9160 10844 4.515944 GCATGAAATCCCATCTCTTCTCTG 59.484 45.833 0.00 0.00 0.00 3.35
9201 10885 6.183360 CCATCTCCAACTTTGTTGTTTCTTCT 60.183 38.462 9.20 0.00 0.00 2.85
9202 10886 6.834168 TCTCCAACTTTGTTGTTTCTTCTT 57.166 33.333 9.20 0.00 0.00 2.52
9203 10887 6.852664 TCTCCAACTTTGTTGTTTCTTCTTC 58.147 36.000 9.20 0.00 0.00 2.87
9227 10911 4.017958 TCTGAGTACCTCCTTGATCTCACT 60.018 45.833 0.00 0.00 0.00 3.41
9285 10970 0.176680 TCTTGAGCATCTCCTTCGGC 59.823 55.000 0.00 0.00 34.92 5.54
9291 10976 1.764054 CATCTCCTTCGGCCCTCCT 60.764 63.158 0.00 0.00 0.00 3.69
9319 11004 1.685765 TCCCATGCTAGACGCCACT 60.686 57.895 0.00 0.00 38.05 4.00
9354 11039 2.815589 GCACCCTTTTCTCACCATCACT 60.816 50.000 0.00 0.00 0.00 3.41
9355 11040 3.559171 GCACCCTTTTCTCACCATCACTA 60.559 47.826 0.00 0.00 0.00 2.74
9356 11041 4.256920 CACCCTTTTCTCACCATCACTAG 58.743 47.826 0.00 0.00 0.00 2.57
9357 11042 3.264450 ACCCTTTTCTCACCATCACTAGG 59.736 47.826 0.00 0.00 0.00 3.02
9358 11043 3.274288 CCTTTTCTCACCATCACTAGGC 58.726 50.000 0.00 0.00 0.00 3.93
9359 11044 3.307691 CCTTTTCTCACCATCACTAGGCA 60.308 47.826 0.00 0.00 0.00 4.75
9360 11045 3.334583 TTTCTCACCATCACTAGGCAC 57.665 47.619 0.00 0.00 0.00 5.01
9361 11046 1.195115 TCTCACCATCACTAGGCACC 58.805 55.000 0.00 0.00 0.00 5.01
9362 11047 0.179000 CTCACCATCACTAGGCACCC 59.821 60.000 0.00 0.00 0.00 4.61
9363 11048 0.252696 TCACCATCACTAGGCACCCT 60.253 55.000 0.00 0.00 37.71 4.34
9364 11049 0.620556 CACCATCACTAGGCACCCTT 59.379 55.000 0.00 0.00 34.61 3.95
9365 11050 1.004745 CACCATCACTAGGCACCCTTT 59.995 52.381 0.00 0.00 34.61 3.11
9366 11051 1.710809 ACCATCACTAGGCACCCTTTT 59.289 47.619 0.00 0.00 34.61 2.27
9367 11052 2.290960 ACCATCACTAGGCACCCTTTTC 60.291 50.000 0.00 0.00 34.61 2.29
9368 11053 2.025887 CCATCACTAGGCACCCTTTTCT 60.026 50.000 0.00 0.00 34.61 2.52
9369 11054 3.274288 CATCACTAGGCACCCTTTTCTC 58.726 50.000 0.00 0.00 34.61 2.87
9370 11055 2.334977 TCACTAGGCACCCTTTTCTCA 58.665 47.619 0.00 0.00 34.61 3.27
9371 11056 2.038557 TCACTAGGCACCCTTTTCTCAC 59.961 50.000 0.00 0.00 34.61 3.51
9372 11057 1.351350 ACTAGGCACCCTTTTCTCACC 59.649 52.381 0.00 0.00 34.61 4.02
9373 11058 1.351017 CTAGGCACCCTTTTCTCACCA 59.649 52.381 0.00 0.00 34.61 4.17
9374 11059 0.779997 AGGCACCCTTTTCTCACCAT 59.220 50.000 0.00 0.00 0.00 3.55
9375 11060 1.177401 GGCACCCTTTTCTCACCATC 58.823 55.000 0.00 0.00 0.00 3.51
9376 11061 1.547675 GGCACCCTTTTCTCACCATCA 60.548 52.381 0.00 0.00 0.00 3.07
9377 11062 1.541588 GCACCCTTTTCTCACCATCAC 59.458 52.381 0.00 0.00 0.00 3.06
9378 11063 2.815589 GCACCCTTTTCTCACCATCACT 60.816 50.000 0.00 0.00 0.00 3.41
9387 11072 4.462508 TCTCACCATCACTGTCATCTTC 57.537 45.455 0.00 0.00 0.00 2.87
9437 11122 6.831353 TGAGTACTCCAATTTTCACTTTTGGA 59.169 34.615 20.11 3.80 45.00 3.53
9441 11126 5.163311 ACTCCAATTTTCACTTTTGGAAGGG 60.163 40.000 5.26 0.00 46.07 3.95
9442 11127 3.814842 CCAATTTTCACTTTTGGAAGGGC 59.185 43.478 0.00 0.00 42.02 5.19
9446 11140 0.112412 TCACTTTTGGAAGGGCTCCC 59.888 55.000 0.00 0.00 44.69 4.30
9528 11222 7.995488 ACCAGAGACCAATTCCTTCTATTATTG 59.005 37.037 0.00 0.00 0.00 1.90
9663 11357 7.499200 TCCATTCAAATTGAGGGAAATTCAT 57.501 32.000 13.69 0.00 31.53 2.57
9677 11371 7.589993 AGGGAAATTCATATGGTGATTTCTCT 58.410 34.615 22.82 22.82 38.68 3.10
9719 11413 8.729047 TCCCAATATTATTAGGGAGCTAAAACA 58.271 33.333 16.43 0.62 45.15 2.83
9720 11414 9.362151 CCCAATATTATTAGGGAGCTAAAACAA 57.638 33.333 14.16 0.00 44.30 2.83
9727 11421 7.775053 ATTAGGGAGCTAAAACAACATTTCA 57.225 32.000 0.00 0.00 0.00 2.69
9728 11422 7.775053 TTAGGGAGCTAAAACAACATTTCAT 57.225 32.000 0.00 0.00 0.00 2.57
9729 11423 6.670695 AGGGAGCTAAAACAACATTTCATT 57.329 33.333 0.00 0.00 0.00 2.57
9730 11424 7.775053 AGGGAGCTAAAACAACATTTCATTA 57.225 32.000 0.00 0.00 0.00 1.90
9731 11425 8.189119 AGGGAGCTAAAACAACATTTCATTAA 57.811 30.769 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
9 10 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
11 12 2.125673 ACCGTTGGATTCCTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
14 15 1.468914 GCTTTCACCGTTGGATTCCTC 59.531 52.381 3.95 0.00 0.00 3.71
15 16 1.534729 GCTTTCACCGTTGGATTCCT 58.465 50.000 3.95 0.00 0.00 3.36
17 18 0.168128 CCGCTTTCACCGTTGGATTC 59.832 55.000 0.00 0.00 0.00 2.52
18 19 0.536460 ACCGCTTTCACCGTTGGATT 60.536 50.000 0.00 0.00 0.00 3.01
19 20 0.536460 AACCGCTTTCACCGTTGGAT 60.536 50.000 0.00 0.00 0.00 3.41
21 22 1.281656 GAACCGCTTTCACCGTTGG 59.718 57.895 0.00 0.00 33.94 3.77
24 25 1.663702 CTCGAACCGCTTTCACCGT 60.664 57.895 0.00 0.00 33.24 4.83
25 26 0.736325 ATCTCGAACCGCTTTCACCG 60.736 55.000 0.00 0.00 33.24 4.94
26 27 1.439679 AATCTCGAACCGCTTTCACC 58.560 50.000 0.00 0.00 33.24 4.02
27 28 2.412847 CCAAATCTCGAACCGCTTTCAC 60.413 50.000 0.00 0.00 33.24 3.18
28 29 1.804151 CCAAATCTCGAACCGCTTTCA 59.196 47.619 0.00 0.00 33.24 2.69
29 30 2.073816 TCCAAATCTCGAACCGCTTTC 58.926 47.619 0.00 0.00 0.00 2.62
30 31 2.178912 TCCAAATCTCGAACCGCTTT 57.821 45.000 0.00 0.00 0.00 3.51
31 32 2.009774 CATCCAAATCTCGAACCGCTT 58.990 47.619 0.00 0.00 0.00 4.68
32 33 1.656652 CATCCAAATCTCGAACCGCT 58.343 50.000 0.00 0.00 0.00 5.52
33 34 0.028110 GCATCCAAATCTCGAACCGC 59.972 55.000 0.00 0.00 0.00 5.68
34 35 1.062587 GTGCATCCAAATCTCGAACCG 59.937 52.381 0.00 0.00 0.00 4.44
35 36 1.062587 CGTGCATCCAAATCTCGAACC 59.937 52.381 0.00 0.00 0.00 3.62
37 38 1.338674 ACCGTGCATCCAAATCTCGAA 60.339 47.619 0.00 0.00 0.00 3.71
39 40 1.086696 AACCGTGCATCCAAATCTCG 58.913 50.000 0.00 0.00 0.00 4.04
40 41 2.487762 TCAAACCGTGCATCCAAATCTC 59.512 45.455 0.00 0.00 0.00 2.75
41 42 2.489329 CTCAAACCGTGCATCCAAATCT 59.511 45.455 0.00 0.00 0.00 2.40
42 43 2.487762 TCTCAAACCGTGCATCCAAATC 59.512 45.455 0.00 0.00 0.00 2.17
43 44 2.489329 CTCTCAAACCGTGCATCCAAAT 59.511 45.455 0.00 0.00 0.00 2.32
44 45 1.879380 CTCTCAAACCGTGCATCCAAA 59.121 47.619 0.00 0.00 0.00 3.28
45 46 1.071542 TCTCTCAAACCGTGCATCCAA 59.928 47.619 0.00 0.00 0.00 3.53
48 49 5.545658 TTTTATCTCTCAAACCGTGCATC 57.454 39.130 0.00 0.00 0.00 3.91
49 50 5.415701 ACATTTTATCTCTCAAACCGTGCAT 59.584 36.000 0.00 0.00 0.00 3.96
52 53 7.860373 TCAAAACATTTTATCTCTCAAACCGTG 59.140 33.333 0.00 0.00 0.00 4.94
54 55 8.795786 TTCAAAACATTTTATCTCTCAAACCG 57.204 30.769 0.00 0.00 0.00 4.44
103 104 3.246687 TCGCCACCTGGGACTTTT 58.753 55.556 0.00 0.00 40.01 2.27
108 109 2.847234 ACTTGTCGCCACCTGGGA 60.847 61.111 0.00 0.00 40.01 4.37
109 110 2.669569 CACTTGTCGCCACCTGGG 60.670 66.667 0.00 0.00 40.85 4.45
111 112 3.357079 GCCACTTGTCGCCACCTG 61.357 66.667 0.00 0.00 0.00 4.00
112 113 4.988598 CGCCACTTGTCGCCACCT 62.989 66.667 0.00 0.00 0.00 4.00
134 135 2.889578 CAACAAGTGGTGCACATGC 58.110 52.632 20.43 7.79 36.67 4.06
141 142 2.034558 CCCTTAGTTGCAACAAGTGGTG 59.965 50.000 30.11 16.40 35.41 4.17
142 143 2.092103 TCCCTTAGTTGCAACAAGTGGT 60.092 45.455 30.11 11.86 0.00 4.16
143 144 2.582052 TCCCTTAGTTGCAACAAGTGG 58.418 47.619 30.11 26.01 0.00 4.00
144 145 4.853924 ATTCCCTTAGTTGCAACAAGTG 57.146 40.909 30.11 20.47 0.00 3.16
145 146 4.039124 CCAATTCCCTTAGTTGCAACAAGT 59.961 41.667 30.11 13.34 0.00 3.16
146 147 4.280677 TCCAATTCCCTTAGTTGCAACAAG 59.719 41.667 30.11 26.17 0.00 3.16
148 149 3.826157 CTCCAATTCCCTTAGTTGCAACA 59.174 43.478 30.11 14.17 0.00 3.33
149 150 3.826729 ACTCCAATTCCCTTAGTTGCAAC 59.173 43.478 22.17 22.17 0.00 4.17
150 151 3.826157 CACTCCAATTCCCTTAGTTGCAA 59.174 43.478 0.00 0.00 0.00 4.08
154 155 6.394345 AAGATCACTCCAATTCCCTTAGTT 57.606 37.500 0.00 0.00 0.00 2.24
156 157 5.067023 GCAAAGATCACTCCAATTCCCTTAG 59.933 44.000 0.00 0.00 0.00 2.18
157 158 4.949856 GCAAAGATCACTCCAATTCCCTTA 59.050 41.667 0.00 0.00 0.00 2.69
158 159 3.766051 GCAAAGATCACTCCAATTCCCTT 59.234 43.478 0.00 0.00 0.00 3.95
159 160 3.245371 TGCAAAGATCACTCCAATTCCCT 60.245 43.478 0.00 0.00 0.00 4.20
161 162 4.022068 TGTTGCAAAGATCACTCCAATTCC 60.022 41.667 0.00 0.00 0.00 3.01
163 164 5.069516 ACTTGTTGCAAAGATCACTCCAATT 59.930 36.000 0.00 0.00 0.00 2.32
164 165 4.586001 ACTTGTTGCAAAGATCACTCCAAT 59.414 37.500 0.00 0.00 0.00 3.16
166 167 3.554934 ACTTGTTGCAAAGATCACTCCA 58.445 40.909 0.00 0.00 0.00 3.86
167 168 4.757149 AGTACTTGTTGCAAAGATCACTCC 59.243 41.667 0.00 0.00 0.00 3.85
169 170 4.757149 GGAGTACTTGTTGCAAAGATCACT 59.243 41.667 0.00 2.09 0.00 3.41
171 172 4.973168 AGGAGTACTTGTTGCAAAGATCA 58.027 39.130 0.00 0.00 0.00 2.92
172 173 5.948992 AAGGAGTACTTGTTGCAAAGATC 57.051 39.130 0.00 0.00 38.21 2.75
173 174 8.409358 AATTAAGGAGTACTTGTTGCAAAGAT 57.591 30.769 0.00 0.00 40.37 2.40
176 177 8.564574 CACTAATTAAGGAGTACTTGTTGCAAA 58.435 33.333 0.00 0.00 40.37 3.68
182 183 9.367444 CGAAATCACTAATTAAGGAGTACTTGT 57.633 33.333 0.00 0.00 40.37 3.16
183 184 8.818057 CCGAAATCACTAATTAAGGAGTACTTG 58.182 37.037 0.00 0.00 40.37 3.16
185 186 6.985059 GCCGAAATCACTAATTAAGGAGTACT 59.015 38.462 0.00 0.00 0.00 2.73
186 187 6.202379 GGCCGAAATCACTAATTAAGGAGTAC 59.798 42.308 0.00 0.00 0.00 2.73
187 188 6.126997 TGGCCGAAATCACTAATTAAGGAGTA 60.127 38.462 0.00 0.00 0.00 2.59
188 189 5.123936 GGCCGAAATCACTAATTAAGGAGT 58.876 41.667 0.00 0.00 0.00 3.85
191 192 5.048713 GGATGGCCGAAATCACTAATTAAGG 60.049 44.000 0.00 0.00 0.00 2.69
192 193 5.048713 GGGATGGCCGAAATCACTAATTAAG 60.049 44.000 0.00 0.00 33.83 1.85
194 195 4.394729 GGGATGGCCGAAATCACTAATTA 58.605 43.478 0.00 0.00 33.83 1.40
195 196 3.222603 GGGATGGCCGAAATCACTAATT 58.777 45.455 0.00 0.00 33.83 1.40
197 198 1.474320 CGGGATGGCCGAAATCACTAA 60.474 52.381 0.00 0.00 33.83 2.24
198 199 0.105964 CGGGATGGCCGAAATCACTA 59.894 55.000 0.00 0.00 33.83 2.74
199 200 1.153168 CGGGATGGCCGAAATCACT 60.153 57.895 0.00 0.00 33.83 3.41
200 201 2.834618 GCGGGATGGCCGAAATCAC 61.835 63.158 0.00 0.00 33.83 3.06
201 202 2.515991 GCGGGATGGCCGAAATCA 60.516 61.111 0.00 0.00 33.83 2.57
203 204 1.898574 GATGCGGGATGGCCGAAAT 60.899 57.895 0.00 0.00 33.83 2.17
204 205 2.515991 GATGCGGGATGGCCGAAA 60.516 61.111 0.00 0.00 33.83 3.46
205 206 3.755526 CTGATGCGGGATGGCCGAA 62.756 63.158 0.00 0.00 33.83 4.30
207 208 3.755526 TTCTGATGCGGGATGGCCG 62.756 63.158 0.00 0.00 33.83 6.13
208 209 2.189499 GTTCTGATGCGGGATGGCC 61.189 63.158 0.00 0.00 0.00 5.36
211 212 3.723172 CCGTTCTGATGCGGGATG 58.277 61.111 11.72 0.00 43.85 3.51
216 217 0.371301 CACATGACCGTTCTGATGCG 59.629 55.000 0.00 0.00 0.00 4.73
218 219 4.110036 TCTACACATGACCGTTCTGATG 57.890 45.455 0.00 0.00 0.00 3.07
219 220 5.344743 AATCTACACATGACCGTTCTGAT 57.655 39.130 0.00 0.00 0.00 2.90
220 221 4.801330 AATCTACACATGACCGTTCTGA 57.199 40.909 0.00 0.00 0.00 3.27
224 225 5.995282 TCAAAGAAATCTACACATGACCGTT 59.005 36.000 0.00 0.00 0.00 4.44
227 228 6.150140 AGCTTCAAAGAAATCTACACATGACC 59.850 38.462 0.00 0.00 0.00 4.02
228 229 7.020010 CAGCTTCAAAGAAATCTACACATGAC 58.980 38.462 0.00 0.00 0.00 3.06
229 230 6.348786 GCAGCTTCAAAGAAATCTACACATGA 60.349 38.462 0.00 0.00 0.00 3.07
232 233 4.821260 TGCAGCTTCAAAGAAATCTACACA 59.179 37.500 0.00 0.00 0.00 3.72
233 234 5.149977 GTGCAGCTTCAAAGAAATCTACAC 58.850 41.667 0.00 0.00 0.00 2.90
234 235 4.083855 CGTGCAGCTTCAAAGAAATCTACA 60.084 41.667 0.00 0.00 0.00 2.74
235 236 4.398247 CGTGCAGCTTCAAAGAAATCTAC 58.602 43.478 0.00 0.00 0.00 2.59
236 237 3.120199 GCGTGCAGCTTCAAAGAAATCTA 60.120 43.478 0.00 0.00 44.04 1.98
237 238 2.351157 GCGTGCAGCTTCAAAGAAATCT 60.351 45.455 0.00 0.00 44.04 2.40
239 240 2.056094 GCGTGCAGCTTCAAAGAAAT 57.944 45.000 0.00 0.00 44.04 2.17
240 241 3.549997 GCGTGCAGCTTCAAAGAAA 57.450 47.368 0.00 0.00 44.04 2.52
257 258 0.878086 GCTCCTTCCACTCGCTATGC 60.878 60.000 0.00 0.00 0.00 3.14
259 260 1.403687 GGGCTCCTTCCACTCGCTAT 61.404 60.000 0.00 0.00 0.00 2.97
260 261 2.058595 GGGCTCCTTCCACTCGCTA 61.059 63.158 0.00 0.00 0.00 4.26
261 262 3.394836 GGGCTCCTTCCACTCGCT 61.395 66.667 0.00 0.00 0.00 4.93
262 263 4.475135 GGGGCTCCTTCCACTCGC 62.475 72.222 0.00 0.00 0.00 5.03
263 264 2.685380 AGGGGCTCCTTCCACTCG 60.685 66.667 0.00 0.00 41.56 4.18
276 277 2.764010 GTGTTAAATTGGGCCTAAGGGG 59.236 50.000 7.87 0.00 38.36 4.79
278 279 3.436243 TGGTGTTAAATTGGGCCTAAGG 58.564 45.455 7.87 0.00 0.00 2.69
279 280 4.340617 TCTGGTGTTAAATTGGGCCTAAG 58.659 43.478 7.87 0.00 0.00 2.18
280 281 4.390129 TCTGGTGTTAAATTGGGCCTAA 57.610 40.909 3.11 3.11 0.00 2.69
281 282 4.340617 CTTCTGGTGTTAAATTGGGCCTA 58.659 43.478 4.53 0.00 0.00 3.93
282 283 2.990740 TCTGGTGTTAAATTGGGCCT 57.009 45.000 4.53 0.00 0.00 5.19
284 285 2.353704 GCCTTCTGGTGTTAAATTGGGC 60.354 50.000 0.00 0.00 35.27 5.36
285 286 2.896685 TGCCTTCTGGTGTTAAATTGGG 59.103 45.455 0.00 0.00 35.27 4.12
286 287 3.826157 TCTGCCTTCTGGTGTTAAATTGG 59.174 43.478 0.00 0.00 35.27 3.16
287 288 5.452078 TTCTGCCTTCTGGTGTTAAATTG 57.548 39.130 0.00 0.00 35.27 2.32
288 289 6.670695 ATTTCTGCCTTCTGGTGTTAAATT 57.329 33.333 0.00 0.00 35.27 1.82
289 290 6.041979 ACAATTTCTGCCTTCTGGTGTTAAAT 59.958 34.615 0.00 0.00 35.27 1.40
290 291 5.362430 ACAATTTCTGCCTTCTGGTGTTAAA 59.638 36.000 0.00 0.00 35.27 1.52
291 292 4.892934 ACAATTTCTGCCTTCTGGTGTTAA 59.107 37.500 0.00 0.00 35.27 2.01
292 293 4.469657 ACAATTTCTGCCTTCTGGTGTTA 58.530 39.130 0.00 0.00 35.27 2.41
293 294 3.299503 ACAATTTCTGCCTTCTGGTGTT 58.700 40.909 0.00 0.00 35.27 3.32
294 295 2.949447 ACAATTTCTGCCTTCTGGTGT 58.051 42.857 0.00 0.00 35.27 4.16
295 296 4.321230 GGTAACAATTTCTGCCTTCTGGTG 60.321 45.833 0.00 0.00 35.27 4.17
297 298 3.119849 CGGTAACAATTTCTGCCTTCTGG 60.120 47.826 0.00 0.00 0.00 3.86
298 299 3.119849 CCGGTAACAATTTCTGCCTTCTG 60.120 47.826 0.00 0.00 0.00 3.02
299 300 3.081804 CCGGTAACAATTTCTGCCTTCT 58.918 45.455 0.00 0.00 0.00 2.85
301 302 3.081804 CTCCGGTAACAATTTCTGCCTT 58.918 45.455 0.00 0.00 0.00 4.35
302 303 2.711542 CTCCGGTAACAATTTCTGCCT 58.288 47.619 0.00 0.00 0.00 4.75
303 304 1.132453 GCTCCGGTAACAATTTCTGCC 59.868 52.381 0.00 0.00 0.00 4.85
307 308 2.413634 CCGTTGCTCCGGTAACAATTTC 60.414 50.000 0.00 0.00 43.07 2.17
308 309 1.538075 CCGTTGCTCCGGTAACAATTT 59.462 47.619 0.00 0.00 43.07 1.82
309 310 1.161843 CCGTTGCTCCGGTAACAATT 58.838 50.000 0.00 0.00 43.07 2.32
310 311 2.849081 CCGTTGCTCCGGTAACAAT 58.151 52.632 0.00 0.00 43.07 2.71
311 312 4.364817 CCGTTGCTCCGGTAACAA 57.635 55.556 0.00 1.49 43.07 2.83
318 319 3.997064 CTCTCAGGCCGTTGCTCCG 62.997 68.421 0.00 0.00 37.74 4.63
321 322 3.710722 CCCTCTCAGGCCGTTGCT 61.711 66.667 0.00 0.00 37.74 3.91
322 323 3.553095 AACCCTCTCAGGCCGTTGC 62.553 63.158 0.00 0.00 32.73 4.17
323 324 1.672356 CAACCCTCTCAGGCCGTTG 60.672 63.158 0.00 0.00 33.42 4.10
326 327 2.124507 TTTCCAACCCTCTCAGGCCG 62.125 60.000 0.00 0.00 32.73 6.13
327 328 0.322906 CTTTCCAACCCTCTCAGGCC 60.323 60.000 0.00 0.00 32.73 5.19
328 329 0.402121 ACTTTCCAACCCTCTCAGGC 59.598 55.000 0.00 0.00 32.73 4.85
331 332 3.053991 TGTGAAACTTTCCAACCCTCTCA 60.054 43.478 0.00 0.00 38.04 3.27
332 333 3.551846 TGTGAAACTTTCCAACCCTCTC 58.448 45.455 0.00 0.00 38.04 3.20
336 337 7.851387 TTAAAATTGTGAAACTTTCCAACCC 57.149 32.000 0.00 0.00 38.04 4.11
362 363 9.760077 CACTACTCGGTTTTACCATTTAGATAT 57.240 33.333 0.00 0.00 38.47 1.63
363 364 8.970020 TCACTACTCGGTTTTACCATTTAGATA 58.030 33.333 0.00 0.00 38.47 1.98
364 365 7.844009 TCACTACTCGGTTTTACCATTTAGAT 58.156 34.615 0.00 0.00 38.47 1.98
365 366 7.230849 TCACTACTCGGTTTTACCATTTAGA 57.769 36.000 0.00 0.00 38.47 2.10
366 367 7.762615 TGATCACTACTCGGTTTTACCATTTAG 59.237 37.037 0.00 0.00 38.47 1.85
368 369 6.469410 TGATCACTACTCGGTTTTACCATTT 58.531 36.000 0.00 0.00 38.47 2.32
460 463 3.244491 ACGCCTCACTCCGTATATAGTCT 60.244 47.826 0.00 0.00 35.69 3.24
461 464 3.072944 ACGCCTCACTCCGTATATAGTC 58.927 50.000 0.00 0.00 35.69 2.59
573 577 6.183360 CGGACAACAAACACCAGATTATCTAC 60.183 42.308 0.00 0.00 0.00 2.59
577 581 3.190535 GCGGACAACAAACACCAGATTAT 59.809 43.478 0.00 0.00 0.00 1.28
588 592 1.123928 AATTTGGGGCGGACAACAAA 58.876 45.000 5.58 5.58 37.25 2.83
592 596 1.414158 TTGAAATTTGGGGCGGACAA 58.586 45.000 0.00 0.00 0.00 3.18
650 654 9.088987 ACACACTATTTAACAGATCCCAAATTT 57.911 29.630 0.00 0.00 0.00 1.82
716 720 2.105006 TGGACATTTGAGCAGCTCTC 57.895 50.000 23.15 11.57 42.23 3.20
723 727 3.192001 TCAGAGCATTTGGACATTTGAGC 59.808 43.478 0.00 0.00 0.00 4.26
740 744 1.135575 GGTGCGCTCCAAATTTCAGAG 60.136 52.381 23.09 9.49 0.00 3.35
764 768 8.096621 TCATGGAAGGTAGATAATTTGGTGTA 57.903 34.615 0.00 0.00 0.00 2.90
825 830 0.687920 TACATCTGCACCCGGTCAAA 59.312 50.000 0.00 0.00 0.00 2.69
844 849 2.441001 AGATTCAATTCTGAGCCCGGAT 59.559 45.455 0.73 0.00 31.69 4.18
890 901 8.303876 GCAAAATGAGTGAATTACCCTCTAAAA 58.696 33.333 0.00 0.00 0.00 1.52
920 931 9.725019 TTAGAGATTCCAATGCGAATTACATAT 57.275 29.630 0.00 0.00 32.56 1.78
929 940 6.817765 AAGTTTTTAGAGATTCCAATGCGA 57.182 33.333 0.00 0.00 0.00 5.10
958 969 9.778993 GAGAGATTAACACGTGTGTACTATAAA 57.221 33.333 24.16 7.14 44.13 1.40
1069 1080 2.398498 GTTCCCGTCATCATCTCATCG 58.602 52.381 0.00 0.00 0.00 3.84
1615 1632 6.076981 ACAACCAAAGAAAGATCATGTCAC 57.923 37.500 0.00 0.00 0.00 3.67
1657 1674 5.648178 AATAAACACCCGGTGGAATTTAC 57.352 39.130 21.77 0.00 37.94 2.01
1842 1859 6.555315 GTGTCGGAAGATGATAAGCATTTTT 58.445 36.000 0.00 0.00 45.19 1.94
1843 1860 5.220662 CGTGTCGGAAGATGATAAGCATTTT 60.221 40.000 0.00 0.00 45.19 1.82
1971 1988 1.615424 GGCCTACACAGAGGGGGAA 60.615 63.158 0.00 0.00 37.06 3.97
2207 2224 2.694616 ATGTTGGCCAACTAAAGGGT 57.305 45.000 40.40 19.47 41.67 4.34
2231 2248 0.035534 ACCTGCGATGTTGTATGGCA 60.036 50.000 0.00 0.00 0.00 4.92
2412 2429 2.530701 CTGGTACCTCAGAAGGACACT 58.469 52.381 14.36 0.00 46.67 3.55
2602 2619 5.355596 AGCAGACTACTACTTGATGCAATC 58.644 41.667 0.00 0.00 45.83 2.67
2672 2689 2.827921 AGAAACTTCACAATCCCCATGC 59.172 45.455 0.00 0.00 0.00 4.06
2726 2743 6.364706 CGAGAATTCATCACTAGACTAATGGC 59.635 42.308 8.44 0.00 0.00 4.40
2733 2750 5.501574 GCTTTGCGAGAATTCATCACTAGAC 60.502 44.000 8.44 0.00 0.00 2.59
2745 2762 3.691118 TCTGCTATTTGCTTTGCGAGAAT 59.309 39.130 0.00 0.00 43.37 2.40
2772 2789 9.971922 TTGATCACAGTCTACATATGTAATCTG 57.028 33.333 27.34 27.34 37.34 2.90
2778 2795 7.559486 ACATGTTGATCACAGTCTACATATGT 58.441 34.615 13.93 13.93 40.76 2.29
2789 2806 9.850628 ATAAATCTTTTGACATGTTGATCACAG 57.149 29.630 0.00 0.00 39.40 3.66
2969 2989 3.103447 TCATCGCAATCTCCATCTGAC 57.897 47.619 0.00 0.00 0.00 3.51
3026 3046 0.665835 TCACAACAATTGCCGACACC 59.334 50.000 5.05 0.00 0.00 4.16
3031 3051 2.126467 CAAGGTTCACAACAATTGCCG 58.874 47.619 5.05 0.00 0.00 5.69
7710 9201 1.559831 GGAATACCAATTTGCTGCGC 58.440 50.000 0.00 0.00 35.97 6.09
7786 9277 2.494471 TCCAATGAGAAAGCCTGCAATG 59.506 45.455 0.00 0.00 0.00 2.82
8011 9502 0.623723 GGCCCACCTGGATTCTGTAA 59.376 55.000 0.00 0.00 37.39 2.41
8012 9503 2.307153 GGCCCACCTGGATTCTGTA 58.693 57.895 0.00 0.00 37.39 2.74
8037 9528 1.003118 TCTCCTAGTGCATTGCGGTTT 59.997 47.619 3.84 0.00 0.00 3.27
8160 9651 7.284074 TCAAATGGAGGTTAAGTTTGTACTCA 58.716 34.615 0.00 0.00 31.99 3.41
8248 9739 6.591935 TGCTTCTACGGGAATTCTTCAATAT 58.408 36.000 5.23 0.00 33.01 1.28
8252 9743 3.973206 TGCTTCTACGGGAATTCTTCA 57.027 42.857 5.23 0.00 33.01 3.02
8280 9771 0.890542 GTGGCATGCTGGTTGTGAGA 60.891 55.000 18.92 0.00 0.00 3.27
8382 9873 6.404844 CCTCACTATCATCTTCGTACAACACT 60.405 42.308 0.00 0.00 0.00 3.55
8433 9924 1.418334 ATCTCAATCCCACCTCCTCG 58.582 55.000 0.00 0.00 0.00 4.63
8441 9932 2.103771 GCAGCTCTGTATCTCAATCCCA 59.896 50.000 0.00 0.00 0.00 4.37
8469 9960 0.751643 TCTCCTCATCGTCATCGCCA 60.752 55.000 0.00 0.00 36.96 5.69
8507 9998 2.039974 TGCACAGCAACCCATAGCG 61.040 57.895 0.00 0.00 34.76 4.26
8657 10283 4.976731 CGTGACGATCTATTACCCTTCTTG 59.023 45.833 0.00 0.00 0.00 3.02
8675 10301 0.390340 TCTCAGCATGGAAGCGTGAC 60.390 55.000 0.00 0.00 40.15 3.67
8696 10322 2.977914 TGAGAGGCATCAACAGTTAGC 58.022 47.619 0.00 0.00 0.00 3.09
8714 10340 5.606505 TGATAGCCGCATTATAACACTTGA 58.393 37.500 0.00 0.00 0.00 3.02
8717 10343 5.468540 TCTGATAGCCGCATTATAACACT 57.531 39.130 0.00 0.00 0.00 3.55
8723 10349 4.090090 AGTACCTCTGATAGCCGCATTAT 58.910 43.478 0.00 0.00 0.00 1.28
8724 10350 3.497332 AGTACCTCTGATAGCCGCATTA 58.503 45.455 0.00 0.00 0.00 1.90
8862 10489 7.543868 CACAAACTTGGATTTTAATGGCGATTA 59.456 33.333 0.00 0.00 0.00 1.75
8926 10553 3.301133 GCAACTTGCTAAAAATATGCGCG 60.301 43.478 0.00 0.00 40.96 6.86
8929 10556 4.856487 TGACGCAACTTGCTAAAAATATGC 59.144 37.500 11.93 0.00 42.25 3.14
8949 10576 8.526681 CACGTCGGTTTAATACTATAAGTTGAC 58.473 37.037 0.00 0.00 0.00 3.18
8956 10583 7.980062 TGTGTACACGTCGGTTTAATACTATA 58.020 34.615 20.61 0.00 0.00 1.31
8994 10630 1.812922 GCATGAGAGGACGGCACAG 60.813 63.158 0.00 0.00 0.00 3.66
9009 10645 3.376078 CTGGGGCTGCAAACGCAT 61.376 61.111 0.50 0.00 39.10 4.73
9019 10655 0.327480 TGACCATACATCCTGGGGCT 60.327 55.000 0.00 0.00 38.14 5.19
9040 10676 1.486211 TTTGAGAGGAGACGGGGATC 58.514 55.000 0.00 0.00 0.00 3.36
9160 10844 3.578282 GAGATGGAGGAGAAGAAGATCCC 59.422 52.174 0.00 0.00 36.14 3.85
9319 11004 1.198759 GGGTGCCTAGAAGTCCCACA 61.199 60.000 0.00 0.00 38.15 4.17
9354 11039 1.440618 TGGTGAGAAAAGGGTGCCTA 58.559 50.000 0.00 0.00 31.13 3.93
9355 11040 0.779997 ATGGTGAGAAAAGGGTGCCT 59.220 50.000 0.00 0.00 33.87 4.75
9356 11041 1.177401 GATGGTGAGAAAAGGGTGCC 58.823 55.000 0.00 0.00 0.00 5.01
9357 11042 1.541588 GTGATGGTGAGAAAAGGGTGC 59.458 52.381 0.00 0.00 0.00 5.01
9358 11043 2.816087 CAGTGATGGTGAGAAAAGGGTG 59.184 50.000 0.00 0.00 0.00 4.61
9359 11044 2.443255 ACAGTGATGGTGAGAAAAGGGT 59.557 45.455 0.00 0.00 0.00 4.34
9360 11045 3.077359 GACAGTGATGGTGAGAAAAGGG 58.923 50.000 0.00 0.00 0.00 3.95
9361 11046 3.743521 TGACAGTGATGGTGAGAAAAGG 58.256 45.455 0.00 0.00 0.00 3.11
9362 11047 5.243981 AGATGACAGTGATGGTGAGAAAAG 58.756 41.667 0.00 0.00 0.00 2.27
9363 11048 5.233083 AGATGACAGTGATGGTGAGAAAA 57.767 39.130 0.00 0.00 0.00 2.29
9364 11049 4.897509 AGATGACAGTGATGGTGAGAAA 57.102 40.909 0.00 0.00 0.00 2.52
9365 11050 4.529769 AGAAGATGACAGTGATGGTGAGAA 59.470 41.667 0.00 0.00 0.00 2.87
9366 11051 4.092279 AGAAGATGACAGTGATGGTGAGA 58.908 43.478 0.00 0.00 0.00 3.27
9367 11052 4.468765 AGAAGATGACAGTGATGGTGAG 57.531 45.455 0.00 0.00 0.00 3.51
9368 11053 4.284234 TGAAGAAGATGACAGTGATGGTGA 59.716 41.667 0.00 0.00 0.00 4.02
9369 11054 4.391216 GTGAAGAAGATGACAGTGATGGTG 59.609 45.833 0.00 0.00 0.00 4.17
9370 11055 4.285517 AGTGAAGAAGATGACAGTGATGGT 59.714 41.667 0.00 0.00 0.00 3.55
9371 11056 4.630505 CAGTGAAGAAGATGACAGTGATGG 59.369 45.833 0.00 0.00 36.25 3.51
9372 11057 4.093115 GCAGTGAAGAAGATGACAGTGATG 59.907 45.833 0.00 0.00 36.25 3.07
9373 11058 4.020396 AGCAGTGAAGAAGATGACAGTGAT 60.020 41.667 0.00 0.00 36.25 3.06
9374 11059 3.323115 AGCAGTGAAGAAGATGACAGTGA 59.677 43.478 0.00 0.00 36.25 3.41
9375 11060 3.432592 CAGCAGTGAAGAAGATGACAGTG 59.567 47.826 0.00 0.00 36.94 3.66
9376 11061 3.070734 ACAGCAGTGAAGAAGATGACAGT 59.929 43.478 0.00 0.00 0.00 3.55
9377 11062 3.661944 ACAGCAGTGAAGAAGATGACAG 58.338 45.455 0.00 0.00 0.00 3.51
9378 11063 3.758755 ACAGCAGTGAAGAAGATGACA 57.241 42.857 0.00 0.00 0.00 3.58
9387 11072 3.049708 TGGAGATGAACAGCAGTGAAG 57.950 47.619 0.00 0.00 0.00 3.02
9437 11122 0.323451 GTGAAAATCGGGGAGCCCTT 60.323 55.000 5.38 0.00 42.67 3.95
9441 11126 2.010497 GAGAAGTGAAAATCGGGGAGC 58.990 52.381 0.00 0.00 0.00 4.70
9442 11127 2.271800 CGAGAAGTGAAAATCGGGGAG 58.728 52.381 0.00 0.00 0.00 4.30
9446 11140 2.412847 GGCAACGAGAAGTGAAAATCGG 60.413 50.000 0.00 0.00 39.42 4.18
9476 11170 4.712122 ACACACCAACTTTGTTCGAATT 57.288 36.364 0.00 0.00 0.00 2.17
9481 11175 4.860352 GGTTGTTACACACCAACTTTGTTC 59.140 41.667 10.35 0.00 40.56 3.18
9505 11199 9.401058 CAACAATAATAGAAGGAATTGGTCTCT 57.599 33.333 0.00 0.00 34.38 3.10
9542 11236 7.573469 GCAATGCAAAAATGGAATAGAGCAAAA 60.573 33.333 0.00 0.00 34.15 2.44
9554 11248 4.393371 TCACATGATGCAATGCAAAAATGG 59.607 37.500 22.87 15.50 43.62 3.16
9704 11398 7.775053 ATGAAATGTTGTTTTAGCTCCCTAA 57.225 32.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.