Multiple sequence alignment - TraesCS6A01G199300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G199300 chr6A 100.000 2252 0 0 1 2252 314900239 314902490 0.000000e+00 4159.0
1 TraesCS6A01G199300 chr6A 97.662 385 9 0 114 498 431543628 431544012 0.000000e+00 662.0
2 TraesCS6A01G199300 chr6A 82.353 136 22 1 2101 2236 275771364 275771231 1.410000e-22 117.0
3 TraesCS6A01G199300 chr2A 94.114 1750 100 3 505 2252 187238082 187239830 0.000000e+00 2658.0
4 TraesCS6A01G199300 chr2A 87.864 412 48 2 1140 1551 503684947 503685356 1.210000e-132 483.0
5 TraesCS6A01G199300 chr2A 76.682 446 93 10 1709 2146 503685552 503685994 1.040000e-58 237.0
6 TraesCS6A01G199300 chr2D 89.021 1266 133 4 924 2185 624764071 624762808 0.000000e+00 1563.0
7 TraesCS6A01G199300 chr2D 86.538 104 14 0 924 1027 386823364 386823467 5.080000e-22 115.0
8 TraesCS6A01G199300 chr2D 94.737 38 0 2 1681 1717 160539932 160539896 8.690000e-05 58.4
9 TraesCS6A01G199300 chr2D 97.059 34 0 1 1685 1717 133684776 133684809 3.120000e-04 56.5
10 TraesCS6A01G199300 chr3D 89.585 1229 125 2 921 2146 404472431 404473659 0.000000e+00 1557.0
11 TraesCS6A01G199300 chr3D 92.677 437 26 3 493 927 404471963 404472395 1.900000e-175 625.0
12 TraesCS6A01G199300 chr3D 83.523 176 25 3 1933 2105 404473490 404473664 6.440000e-36 161.0
13 TraesCS6A01G199300 chr3D 89.623 106 11 0 3 108 249503922 249504027 3.900000e-28 135.0
14 TraesCS6A01G199300 chr3D 78.744 207 35 7 1494 1691 187848310 187848104 1.820000e-26 130.0
15 TraesCS6A01G199300 chr3D 86.239 109 15 0 3 111 354921037 354921145 3.930000e-23 119.0
16 TraesCS6A01G199300 chr1D 89.457 1233 127 2 924 2154 104447507 104446276 0.000000e+00 1554.0
17 TraesCS6A01G199300 chr1D 89.350 554 57 2 1140 1692 179510665 179510113 0.000000e+00 695.0
18 TraesCS6A01G199300 chr1D 92.906 437 25 3 493 927 104447978 104447546 4.080000e-177 630.0
19 TraesCS6A01G199300 chr1D 85.106 188 26 1 1933 2118 104446453 104446266 8.210000e-45 191.0
20 TraesCS6A01G199300 chr1D 100.000 30 0 0 1688 1717 198774455 198774484 3.120000e-04 56.5
21 TraesCS6A01G199300 chr7D 86.484 1280 137 10 924 2201 462064602 462063357 0.000000e+00 1373.0
22 TraesCS6A01G199300 chr7D 87.066 317 37 2 1933 2245 462063579 462063263 2.750000e-94 355.0
23 TraesCS6A01G199300 chr7D 77.836 379 59 11 1716 2071 172344061 172343685 6.300000e-51 211.0
24 TraesCS6A01G199300 chr7D 94.737 38 1 1 1685 1721 169083460 169083423 8.690000e-05 58.4
25 TraesCS6A01G199300 chr7B 85.661 1339 133 24 921 2252 558157076 558158362 0.000000e+00 1354.0
26 TraesCS6A01G199300 chr7B 92.906 437 29 2 493 927 577830845 577830409 3.160000e-178 634.0
27 TraesCS6A01G199300 chr7B 91.972 436 34 1 493 927 558156605 558157040 5.320000e-171 610.0
28 TraesCS6A01G199300 chr7B 80.782 307 53 4 1930 2234 12022502 12022200 3.740000e-58 235.0
29 TraesCS6A01G199300 chr7B 77.076 301 61 6 1954 2252 12022386 12022092 1.380000e-37 167.0
30 TraesCS6A01G199300 chr7B 82.243 107 19 0 924 1030 661455089 661455195 2.380000e-15 93.5
31 TraesCS6A01G199300 chr7A 90.654 963 90 0 921 1883 604757339 604758301 0.000000e+00 1280.0
32 TraesCS6A01G199300 chr7A 90.302 629 55 1 114 742 137912619 137911997 0.000000e+00 819.0
33 TraesCS6A01G199300 chr7A 90.641 577 48 6 114 690 137905455 137904885 0.000000e+00 761.0
34 TraesCS6A01G199300 chr3B 81.910 1288 164 36 924 2208 366468568 366467347 0.000000e+00 1024.0
35 TraesCS6A01G199300 chr3B 91.591 440 29 5 491 929 366469037 366468605 3.200000e-168 601.0
36 TraesCS6A01G199300 chr5B 81.698 1131 165 19 1120 2245 240974885 240973792 0.000000e+00 904.0
37 TraesCS6A01G199300 chr5A 91.493 576 44 5 114 689 422211692 422212262 0.000000e+00 787.0
38 TraesCS6A01G199300 chr5A 97.179 390 11 0 113 502 363999731 363999342 0.000000e+00 660.0
39 TraesCS6A01G199300 chr5A 97.150 386 10 1 114 498 132844029 132843644 0.000000e+00 651.0
40 TraesCS6A01G199300 chr5A 94.673 413 14 5 114 526 435990145 435989741 3.160000e-178 634.0
41 TraesCS6A01G199300 chr5A 80.511 313 57 3 1935 2245 559915782 559915472 1.040000e-58 237.0
42 TraesCS6A01G199300 chr3A 91.176 578 48 3 114 691 202223211 202223785 0.000000e+00 782.0
43 TraesCS6A01G199300 chr3A 90.090 111 11 0 3 113 602954341 602954451 6.480000e-31 145.0
44 TraesCS6A01G199300 chr1A 97.158 387 9 1 114 498 549569915 549570301 0.000000e+00 652.0
45 TraesCS6A01G199300 chr1A 78.125 448 69 14 1720 2139 50312269 50312715 7.980000e-65 257.0
46 TraesCS6A01G199300 chr1A 82.775 209 22 2 1493 1687 50312057 50312265 8.270000e-40 174.0
47 TraesCS6A01G199300 chr1A 77.848 158 28 4 2071 2226 331183573 331183725 8.570000e-15 91.6
48 TraesCS6A01G199300 chr4B 91.762 437 36 0 491 927 268588026 268587590 1.910000e-170 608.0
49 TraesCS6A01G199300 chr4B 87.621 412 49 2 1140 1551 222110481 222110072 5.630000e-131 477.0
50 TraesCS6A01G199300 chr4B 85.849 212 22 4 1465 1676 222110072 222109869 3.770000e-53 219.0
51 TraesCS6A01G199300 chr4B 76.709 395 65 14 1750 2143 74732923 74733291 6.350000e-46 195.0
52 TraesCS6A01G199300 chr4B 83.178 214 21 10 1493 1692 217804403 217804191 4.940000e-42 182.0
53 TraesCS6A01G199300 chr4B 86.486 111 15 0 3 113 490253573 490253683 3.040000e-24 122.0
54 TraesCS6A01G199300 chr4A 92.111 431 30 2 497 927 434659398 434659824 2.470000e-169 604.0
55 TraesCS6A01G199300 chr4A 76.957 447 90 12 1709 2146 706309221 706309663 2.230000e-60 243.0
56 TraesCS6A01G199300 chr6B 77.848 474 76 14 1753 2201 549212396 549211927 1.330000e-67 267.0
57 TraesCS6A01G199300 chr6B 76.324 321 64 9 1937 2252 465705848 465705535 6.440000e-36 161.0
58 TraesCS6A01G199300 chr5D 91.803 122 10 0 924 1045 519106638 519106517 1.070000e-38 171.0
59 TraesCS6A01G199300 chr5D 97.059 34 0 1 1685 1717 21939607 21939640 3.120000e-04 56.5
60 TraesCS6A01G199300 chr4D 88.679 106 12 0 3 108 61103782 61103677 1.820000e-26 130.0
61 TraesCS6A01G199300 chr4D 87.736 106 13 0 3 108 61098487 61098592 8.450000e-25 124.0
62 TraesCS6A01G199300 chr4D 97.059 34 0 1 1685 1717 217103012 217102979 3.120000e-04 56.5
63 TraesCS6A01G199300 chr6D 88.571 105 12 0 3 107 228611200 228611304 6.530000e-26 128.0
64 TraesCS6A01G199300 chr6D 87.387 111 14 0 3 113 332624916 332625026 6.530000e-26 128.0
65 TraesCS6A01G199300 chr6D 86.607 112 14 1 3 113 231883644 231883755 3.040000e-24 122.0
66 TraesCS6A01G199300 chrUn 80.882 136 24 1 2080 2215 464834272 464834405 3.060000e-19 106.0
67 TraesCS6A01G199300 chr2B 92.500 40 3 0 2213 2252 213282669 213282708 8.690000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G199300 chr6A 314900239 314902490 2251 False 4159.000000 4159 100.000000 1 2252 1 chr6A.!!$F1 2251
1 TraesCS6A01G199300 chr2A 187238082 187239830 1748 False 2658.000000 2658 94.114000 505 2252 1 chr2A.!!$F1 1747
2 TraesCS6A01G199300 chr2A 503684947 503685994 1047 False 360.000000 483 82.273000 1140 2146 2 chr2A.!!$F2 1006
3 TraesCS6A01G199300 chr2D 624762808 624764071 1263 True 1563.000000 1563 89.021000 924 2185 1 chr2D.!!$R2 1261
4 TraesCS6A01G199300 chr3D 404471963 404473664 1701 False 781.000000 1557 88.595000 493 2146 3 chr3D.!!$F3 1653
5 TraesCS6A01G199300 chr1D 104446266 104447978 1712 True 791.666667 1554 89.156333 493 2154 3 chr1D.!!$R2 1661
6 TraesCS6A01G199300 chr1D 179510113 179510665 552 True 695.000000 695 89.350000 1140 1692 1 chr1D.!!$R1 552
7 TraesCS6A01G199300 chr7D 462063263 462064602 1339 True 864.000000 1373 86.775000 924 2245 2 chr7D.!!$R3 1321
8 TraesCS6A01G199300 chr7B 558156605 558158362 1757 False 982.000000 1354 88.816500 493 2252 2 chr7B.!!$F2 1759
9 TraesCS6A01G199300 chr7A 604757339 604758301 962 False 1280.000000 1280 90.654000 921 1883 1 chr7A.!!$F1 962
10 TraesCS6A01G199300 chr7A 137911997 137912619 622 True 819.000000 819 90.302000 114 742 1 chr7A.!!$R2 628
11 TraesCS6A01G199300 chr7A 137904885 137905455 570 True 761.000000 761 90.641000 114 690 1 chr7A.!!$R1 576
12 TraesCS6A01G199300 chr3B 366467347 366469037 1690 True 812.500000 1024 86.750500 491 2208 2 chr3B.!!$R1 1717
13 TraesCS6A01G199300 chr5B 240973792 240974885 1093 True 904.000000 904 81.698000 1120 2245 1 chr5B.!!$R1 1125
14 TraesCS6A01G199300 chr5A 422211692 422212262 570 False 787.000000 787 91.493000 114 689 1 chr5A.!!$F1 575
15 TraesCS6A01G199300 chr3A 202223211 202223785 574 False 782.000000 782 91.176000 114 691 1 chr3A.!!$F1 577
16 TraesCS6A01G199300 chr1A 50312057 50312715 658 False 215.500000 257 80.450000 1493 2139 2 chr1A.!!$F3 646
17 TraesCS6A01G199300 chr4B 222109869 222110481 612 True 348.000000 477 86.735000 1140 1676 2 chr4B.!!$R3 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.034198 TCGTGATTTCCCGCAAGTCA 59.966 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1520 0.54083 AAACGGCCCAGGTTATGCAA 60.541 50.0 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.392921 TGAAGCAGAGGAAGTACATAGC 57.607 45.455 0.00 0.00 0.00 2.97
24 25 3.133003 TGAAGCAGAGGAAGTACATAGCC 59.867 47.826 0.00 0.00 0.00 3.93
25 26 1.683917 AGCAGAGGAAGTACATAGCCG 59.316 52.381 0.00 0.00 0.00 5.52
26 27 1.409427 GCAGAGGAAGTACATAGCCGT 59.591 52.381 0.00 0.00 0.00 5.68
27 28 2.621998 GCAGAGGAAGTACATAGCCGTA 59.378 50.000 0.00 0.00 0.00 4.02
28 29 3.304794 GCAGAGGAAGTACATAGCCGTAG 60.305 52.174 0.00 0.00 0.00 3.51
29 30 4.135306 CAGAGGAAGTACATAGCCGTAGA 58.865 47.826 0.00 0.00 0.00 2.59
30 31 4.023878 CAGAGGAAGTACATAGCCGTAGAC 60.024 50.000 0.00 0.00 0.00 2.59
31 32 2.877168 AGGAAGTACATAGCCGTAGACG 59.123 50.000 0.00 0.00 39.44 4.18
32 33 2.874701 GGAAGTACATAGCCGTAGACGA 59.125 50.000 3.07 0.00 43.02 4.20
33 34 3.059051 GGAAGTACATAGCCGTAGACGAG 60.059 52.174 3.07 0.00 43.02 4.18
34 35 3.191078 AGTACATAGCCGTAGACGAGT 57.809 47.619 3.07 0.00 43.02 4.18
35 36 4.327982 AGTACATAGCCGTAGACGAGTA 57.672 45.455 3.07 0.00 43.02 2.59
36 37 4.697514 AGTACATAGCCGTAGACGAGTAA 58.302 43.478 3.07 0.00 43.02 2.24
37 38 4.749099 AGTACATAGCCGTAGACGAGTAAG 59.251 45.833 3.07 0.00 43.02 2.34
38 39 3.539604 ACATAGCCGTAGACGAGTAAGT 58.460 45.455 3.07 0.00 43.02 2.24
39 40 4.697514 ACATAGCCGTAGACGAGTAAGTA 58.302 43.478 3.07 0.00 43.02 2.24
40 41 4.509600 ACATAGCCGTAGACGAGTAAGTAC 59.490 45.833 3.07 0.00 43.02 2.73
41 42 2.284190 AGCCGTAGACGAGTAAGTACC 58.716 52.381 3.07 0.00 43.02 3.34
42 43 2.093235 AGCCGTAGACGAGTAAGTACCT 60.093 50.000 3.07 0.00 43.02 3.08
43 44 2.680339 GCCGTAGACGAGTAAGTACCTT 59.320 50.000 3.07 0.00 43.02 3.50
44 45 3.871594 GCCGTAGACGAGTAAGTACCTTA 59.128 47.826 3.07 0.00 43.02 2.69
45 46 4.513318 GCCGTAGACGAGTAAGTACCTTAT 59.487 45.833 3.07 0.00 43.02 1.73
46 47 5.696724 GCCGTAGACGAGTAAGTACCTTATA 59.303 44.000 3.07 0.00 43.02 0.98
47 48 6.370166 GCCGTAGACGAGTAAGTACCTTATAT 59.630 42.308 3.07 0.00 43.02 0.86
48 49 7.095017 GCCGTAGACGAGTAAGTACCTTATATT 60.095 40.741 3.07 0.00 43.02 1.28
49 50 8.439286 CCGTAGACGAGTAAGTACCTTATATTC 58.561 40.741 3.07 0.00 43.02 1.75
50 51 8.159077 CGTAGACGAGTAAGTACCTTATATTCG 58.841 40.741 0.00 0.00 43.02 3.34
51 52 8.983724 GTAGACGAGTAAGTACCTTATATTCGT 58.016 37.037 12.54 12.54 39.93 3.85
52 53 7.859598 AGACGAGTAAGTACCTTATATTCGTG 58.140 38.462 15.59 0.00 38.77 4.35
53 54 7.712639 AGACGAGTAAGTACCTTATATTCGTGA 59.287 37.037 15.59 0.00 38.77 4.35
54 55 8.388484 ACGAGTAAGTACCTTATATTCGTGAT 57.612 34.615 12.16 0.00 38.08 3.06
55 56 8.844244 ACGAGTAAGTACCTTATATTCGTGATT 58.156 33.333 12.16 0.00 38.08 2.57
56 57 9.674824 CGAGTAAGTACCTTATATTCGTGATTT 57.325 33.333 0.00 0.00 30.46 2.17
58 59 9.978044 AGTAAGTACCTTATATTCGTGATTTCC 57.022 33.333 0.00 0.00 0.00 3.13
59 60 9.201127 GTAAGTACCTTATATTCGTGATTTCCC 57.799 37.037 0.00 0.00 0.00 3.97
60 61 6.453092 AGTACCTTATATTCGTGATTTCCCG 58.547 40.000 0.00 0.00 0.00 5.14
61 62 4.062991 ACCTTATATTCGTGATTTCCCGC 58.937 43.478 0.00 0.00 0.00 6.13
62 63 4.062293 CCTTATATTCGTGATTTCCCGCA 58.938 43.478 0.00 0.00 0.00 5.69
63 64 4.513692 CCTTATATTCGTGATTTCCCGCAA 59.486 41.667 0.00 0.00 0.00 4.85
64 65 5.334105 CCTTATATTCGTGATTTCCCGCAAG 60.334 44.000 0.00 0.00 0.00 4.01
65 66 1.821216 ATTCGTGATTTCCCGCAAGT 58.179 45.000 0.00 0.00 0.00 3.16
66 67 1.153353 TTCGTGATTTCCCGCAAGTC 58.847 50.000 0.00 0.00 0.00 3.01
67 68 0.034198 TCGTGATTTCCCGCAAGTCA 59.966 50.000 0.00 0.00 0.00 3.41
68 69 1.086696 CGTGATTTCCCGCAAGTCAT 58.913 50.000 0.00 0.00 33.61 3.06
69 70 1.202065 CGTGATTTCCCGCAAGTCATG 60.202 52.381 0.00 0.00 33.61 3.07
70 71 1.812571 GTGATTTCCCGCAAGTCATGT 59.187 47.619 0.00 0.00 33.61 3.21
71 72 2.083774 TGATTTCCCGCAAGTCATGTC 58.916 47.619 0.00 0.00 0.00 3.06
72 73 1.401905 GATTTCCCGCAAGTCATGTCC 59.598 52.381 0.00 0.00 0.00 4.02
73 74 0.400213 TTTCCCGCAAGTCATGTCCT 59.600 50.000 0.00 0.00 0.00 3.85
74 75 0.400213 TTCCCGCAAGTCATGTCCTT 59.600 50.000 0.00 0.00 0.00 3.36
75 76 0.036388 TCCCGCAAGTCATGTCCTTC 60.036 55.000 0.00 0.00 0.00 3.46
76 77 1.026718 CCCGCAAGTCATGTCCTTCC 61.027 60.000 0.00 0.00 0.00 3.46
77 78 1.026718 CCGCAAGTCATGTCCTTCCC 61.027 60.000 0.00 0.00 0.00 3.97
78 79 0.036010 CGCAAGTCATGTCCTTCCCT 60.036 55.000 0.00 0.00 0.00 4.20
79 80 1.457346 GCAAGTCATGTCCTTCCCTG 58.543 55.000 0.00 0.00 0.00 4.45
80 81 1.003580 GCAAGTCATGTCCTTCCCTGA 59.996 52.381 0.00 0.00 0.00 3.86
81 82 2.704572 CAAGTCATGTCCTTCCCTGAC 58.295 52.381 0.00 0.00 38.59 3.51
82 83 2.030027 AGTCATGTCCTTCCCTGACA 57.970 50.000 4.56 0.00 45.98 3.58
83 84 2.338809 AGTCATGTCCTTCCCTGACAA 58.661 47.619 4.56 0.00 45.15 3.18
84 85 2.915604 AGTCATGTCCTTCCCTGACAAT 59.084 45.455 4.56 0.00 45.15 2.71
85 86 3.331889 AGTCATGTCCTTCCCTGACAATT 59.668 43.478 4.56 0.00 45.15 2.32
86 87 3.441572 GTCATGTCCTTCCCTGACAATTG 59.558 47.826 3.24 3.24 45.15 2.32
87 88 1.909700 TGTCCTTCCCTGACAATTGC 58.090 50.000 5.05 0.00 39.66 3.56
88 89 1.425066 TGTCCTTCCCTGACAATTGCT 59.575 47.619 5.05 0.00 39.66 3.91
89 90 2.087646 GTCCTTCCCTGACAATTGCTC 58.912 52.381 5.05 3.35 32.91 4.26
90 91 1.004745 TCCTTCCCTGACAATTGCTCC 59.995 52.381 5.05 0.00 0.00 4.70
91 92 1.005215 CCTTCCCTGACAATTGCTCCT 59.995 52.381 5.05 0.00 0.00 3.69
92 93 2.363683 CTTCCCTGACAATTGCTCCTC 58.636 52.381 5.05 0.00 0.00 3.71
93 94 1.361204 TCCCTGACAATTGCTCCTCA 58.639 50.000 5.05 0.65 0.00 3.86
94 95 1.280133 TCCCTGACAATTGCTCCTCAG 59.720 52.381 14.03 14.03 0.00 3.35
95 96 1.681166 CCCTGACAATTGCTCCTCAGG 60.681 57.143 25.48 25.48 46.57 3.86
96 97 2.775911 CTGACAATTGCTCCTCAGGA 57.224 50.000 13.42 0.00 0.00 3.86
97 98 3.278668 CTGACAATTGCTCCTCAGGAT 57.721 47.619 13.42 0.00 0.00 3.24
98 99 3.204526 CTGACAATTGCTCCTCAGGATC 58.795 50.000 13.42 0.00 0.00 3.36
99 100 2.092753 TGACAATTGCTCCTCAGGATCC 60.093 50.000 2.48 2.48 0.00 3.36
100 101 1.213926 ACAATTGCTCCTCAGGATCCC 59.786 52.381 8.55 0.00 0.00 3.85
101 102 1.493871 CAATTGCTCCTCAGGATCCCT 59.506 52.381 8.55 0.00 0.00 4.20
102 103 1.904440 ATTGCTCCTCAGGATCCCTT 58.096 50.000 8.55 0.00 0.00 3.95
103 104 1.207791 TTGCTCCTCAGGATCCCTTC 58.792 55.000 8.55 0.00 0.00 3.46
104 105 1.045350 TGCTCCTCAGGATCCCTTCG 61.045 60.000 8.55 0.00 0.00 3.79
105 106 1.753368 GCTCCTCAGGATCCCTTCGG 61.753 65.000 8.55 4.34 0.00 4.30
106 107 1.753368 CTCCTCAGGATCCCTTCGGC 61.753 65.000 8.55 0.00 0.00 5.54
107 108 1.764054 CCTCAGGATCCCTTCGGCT 60.764 63.158 8.55 0.00 0.00 5.52
108 109 0.470080 CCTCAGGATCCCTTCGGCTA 60.470 60.000 8.55 0.00 0.00 3.93
109 110 1.638529 CTCAGGATCCCTTCGGCTAT 58.361 55.000 8.55 0.00 0.00 2.97
110 111 1.274728 CTCAGGATCCCTTCGGCTATG 59.725 57.143 8.55 0.00 0.00 2.23
111 112 0.322975 CAGGATCCCTTCGGCTATGG 59.677 60.000 8.55 0.00 0.00 2.74
112 113 1.003233 GGATCCCTTCGGCTATGGC 60.003 63.158 0.00 0.00 37.82 4.40
147 148 3.908103 ACATAATAGGTAGGCCCACGAAT 59.092 43.478 0.00 0.00 34.66 3.34
195 196 3.723772 CACAACATGTGGGTCCAGA 57.276 52.632 4.95 0.00 44.27 3.86
203 204 6.269769 ACAACATGTGGGTCCAGATAAATTTT 59.730 34.615 4.95 0.00 0.00 1.82
207 208 9.131791 ACATGTGGGTCCAGATAAATTTTATAC 57.868 33.333 0.00 0.00 0.00 1.47
210 211 7.777910 TGTGGGTCCAGATAAATTTTATACAGG 59.222 37.037 0.00 5.07 0.00 4.00
228 229 2.029828 CAGGCATACTATCCACTCGGAC 60.030 54.545 0.00 0.00 46.79 4.79
255 256 3.898123 AGCATACTATCCACTCGACCAAT 59.102 43.478 0.00 0.00 0.00 3.16
305 306 1.293963 CCACTCGACCGTACGACTCA 61.294 60.000 18.76 0.00 37.37 3.41
329 330 4.407365 TCGGATATATGAAGACCAGCAGA 58.593 43.478 0.00 0.00 0.00 4.26
344 345 1.864862 CAGACAGCAAAGCAGTCGG 59.135 57.895 8.54 4.87 46.95 4.79
362 363 3.986572 GTCGGCATCATTCTCATAGTGAG 59.013 47.826 0.55 0.55 45.59 3.51
369 370 3.135348 TCATTCTCATAGTGAGGGCTTGG 59.865 47.826 7.08 0.00 44.39 3.61
381 382 2.757077 GCTTGGTAGTGGGCTGGT 59.243 61.111 0.00 0.00 0.00 4.00
382 383 1.559065 GGCTTGGTAGTGGGCTGGTA 61.559 60.000 0.00 0.00 0.00 3.25
421 422 4.019681 CCCACTTTGTAACATAGGAGGTGA 60.020 45.833 0.00 0.00 0.00 4.02
430 431 1.537478 ATAGGAGGTGAGGGGGTGGT 61.537 60.000 0.00 0.00 0.00 4.16
463 464 2.656069 CCACCCCCACCACTAGACG 61.656 68.421 0.00 0.00 0.00 4.18
472 477 2.200052 CCACTAGACGAGGGGGTTC 58.800 63.158 0.00 0.00 46.39 3.62
489 494 3.073209 GGGTTCTTTTCTTCCACCTCTCT 59.927 47.826 0.00 0.00 0.00 3.10
490 495 4.320023 GGTTCTTTTCTTCCACCTCTCTC 58.680 47.826 0.00 0.00 0.00 3.20
491 496 4.041075 GGTTCTTTTCTTCCACCTCTCTCT 59.959 45.833 0.00 0.00 0.00 3.10
500 505 2.916269 TCCACCTCTCTCTCTCTCTCAA 59.084 50.000 0.00 0.00 0.00 3.02
502 507 4.017591 TCCACCTCTCTCTCTCTCTCAAAT 60.018 45.833 0.00 0.00 0.00 2.32
507 512 5.299279 CCTCTCTCTCTCTCTCAAATACACC 59.701 48.000 0.00 0.00 0.00 4.16
508 513 5.821097 TCTCTCTCTCTCTCAAATACACCA 58.179 41.667 0.00 0.00 0.00 4.17
526 533 6.282199 ACACCATGTAATCTCCGGATATAC 57.718 41.667 3.57 9.46 0.00 1.47
530 537 7.122204 CACCATGTAATCTCCGGATATACACTA 59.878 40.741 20.09 1.69 33.20 2.74
590 597 3.081710 TGTTATCTCCACCGTGAGAGA 57.918 47.619 17.02 17.02 44.19 3.10
598 605 2.273912 ACCGTGAGAGACCCGAACC 61.274 63.158 0.00 0.00 0.00 3.62
608 615 0.321034 GACCCGAACCCGCTAAAACT 60.321 55.000 0.00 0.00 0.00 2.66
621 628 2.331194 CTAAAACTACCGTGTCACCCG 58.669 52.381 0.00 0.00 0.00 5.28
671 679 8.587608 CCGTTACCCTATACCTTATTATTGTCA 58.412 37.037 0.00 0.00 0.00 3.58
746 758 4.456566 GCCATGATGCAAATGGTTTTCTTT 59.543 37.500 24.90 0.00 45.46 2.52
747 759 5.391203 GCCATGATGCAAATGGTTTTCTTTC 60.391 40.000 24.90 8.88 45.46 2.62
748 760 5.935789 CCATGATGCAAATGGTTTTCTTTCT 59.064 36.000 19.12 0.00 39.87 2.52
749 761 6.428771 CCATGATGCAAATGGTTTTCTTTCTT 59.571 34.615 19.12 0.00 39.87 2.52
768 780 2.519377 TCAATATTCGTCCGCCGATT 57.481 45.000 0.00 0.00 46.75 3.34
772 784 2.867287 TATTCGTCCGCCGATTAACA 57.133 45.000 0.00 0.00 46.75 2.41
847 860 3.265791 GGGAGTCATGCTACTCTTTGTG 58.734 50.000 12.77 0.00 44.42 3.33
1035 1133 5.072040 TGTCGCTTATCTTCTTCATCACA 57.928 39.130 0.00 0.00 0.00 3.58
1046 1144 1.872952 CTTCATCACAAACTGCCGACA 59.127 47.619 0.00 0.00 0.00 4.35
1065 1163 2.887152 ACATGAAAGCAGGAAGTCAACC 59.113 45.455 0.00 0.00 0.00 3.77
1138 1236 4.715523 ACCAACGCCGTCCCCATG 62.716 66.667 0.00 0.00 0.00 3.66
1154 1252 3.547746 CCCATGATCATCATCACACACA 58.452 45.455 4.86 0.00 42.05 3.72
1160 1258 3.490439 TCATCATCACACACAACCACT 57.510 42.857 0.00 0.00 0.00 4.00
1418 1517 4.706476 TGAAGGAATCAATGCCTTGTAAGG 59.294 41.667 7.01 6.29 44.23 2.69
1419 1518 5.751729 TGAAGGAATCAATGCCTTGTAAGGT 60.752 40.000 7.01 0.00 44.23 3.50
1421 1520 9.603064 TGAAGGAATCAATGCCTTGTAAGGTCT 62.603 40.741 7.01 0.00 44.23 3.85
1533 1800 5.563475 CGGATTAATTGGCTGCCTCATTAAG 60.563 44.000 26.43 16.94 29.55 1.85
1553 1820 3.832527 AGTAGCCATTCAAACAAGGTGT 58.167 40.909 0.00 0.00 0.00 4.16
1599 1880 2.838646 CGCAAACGCAACATGCAC 59.161 55.556 2.99 0.00 45.36 4.57
1829 2115 1.670087 CCTCGACGACATGCTCAACTT 60.670 52.381 0.00 0.00 0.00 2.66
1834 2120 1.202639 ACGACATGCTCAACTTGACCA 60.203 47.619 0.00 0.00 0.00 4.02
1927 2236 0.731417 CGTCTATCTCACCCGAACGT 59.269 55.000 0.00 0.00 0.00 3.99
2088 2676 2.555770 CGTCTACGTCACTCGCATG 58.444 57.895 0.00 0.00 44.19 4.06
2089 2677 1.464429 CGTCTACGTCACTCGCATGC 61.464 60.000 7.91 7.91 44.19 4.06
2090 2678 1.138883 TCTACGTCACTCGCATGCC 59.861 57.895 13.15 0.00 44.19 4.40
2091 2679 1.878522 CTACGTCACTCGCATGCCC 60.879 63.158 13.15 0.00 44.19 5.36
2092 2680 3.365291 TACGTCACTCGCATGCCCC 62.365 63.158 13.15 0.00 44.19 5.80
2098 2686 4.923942 CTCGCATGCCCCGCTCAT 62.924 66.667 13.15 0.00 0.00 2.90
2099 2687 4.916293 TCGCATGCCCCGCTCATC 62.916 66.667 13.15 0.00 0.00 2.92
2106 2694 4.899239 CCCCGCTCATCGCCACTC 62.899 72.222 0.00 0.00 36.73 3.51
2107 2695 4.899239 CCCGCTCATCGCCACTCC 62.899 72.222 0.00 0.00 36.73 3.85
2156 2790 2.432456 GCGCGTCATCACTCCACA 60.432 61.111 8.43 0.00 0.00 4.17
2157 2791 2.027073 GCGCGTCATCACTCCACAA 61.027 57.895 8.43 0.00 0.00 3.33
2185 2819 1.174078 TCTACTTCACACGGACGCCA 61.174 55.000 0.00 0.00 0.00 5.69
2201 2835 1.520120 CCATGCGCATCGTCACTCT 60.520 57.895 22.51 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.987912 GCTATGTACTTCCTCTGCTTCATC 59.012 45.833 0.00 0.00 0.00 2.92
1 2 4.202305 GGCTATGTACTTCCTCTGCTTCAT 60.202 45.833 0.00 0.00 0.00 2.57
2 3 3.133003 GGCTATGTACTTCCTCTGCTTCA 59.867 47.826 0.00 0.00 0.00 3.02
3 4 3.723260 GGCTATGTACTTCCTCTGCTTC 58.277 50.000 0.00 0.00 0.00 3.86
4 5 2.101582 CGGCTATGTACTTCCTCTGCTT 59.898 50.000 0.00 0.00 0.00 3.91
5 6 1.683917 CGGCTATGTACTTCCTCTGCT 59.316 52.381 0.00 0.00 0.00 4.24
6 7 1.409427 ACGGCTATGTACTTCCTCTGC 59.591 52.381 0.00 0.00 0.00 4.26
7 8 4.023878 GTCTACGGCTATGTACTTCCTCTG 60.024 50.000 0.00 0.00 0.00 3.35
8 9 4.136051 GTCTACGGCTATGTACTTCCTCT 58.864 47.826 0.00 0.00 0.00 3.69
9 10 3.059051 CGTCTACGGCTATGTACTTCCTC 60.059 52.174 0.00 0.00 35.37 3.71
10 11 2.877168 CGTCTACGGCTATGTACTTCCT 59.123 50.000 0.00 0.00 35.37 3.36
11 12 2.874701 TCGTCTACGGCTATGTACTTCC 59.125 50.000 2.24 0.00 40.29 3.46
12 13 3.559242 ACTCGTCTACGGCTATGTACTTC 59.441 47.826 2.24 0.00 40.29 3.01
13 14 3.539604 ACTCGTCTACGGCTATGTACTT 58.460 45.455 2.24 0.00 40.29 2.24
14 15 3.191078 ACTCGTCTACGGCTATGTACT 57.809 47.619 2.24 0.00 40.29 2.73
15 16 4.509600 ACTTACTCGTCTACGGCTATGTAC 59.490 45.833 2.24 0.00 40.29 2.90
16 17 4.697514 ACTTACTCGTCTACGGCTATGTA 58.302 43.478 2.24 0.00 40.29 2.29
17 18 3.539604 ACTTACTCGTCTACGGCTATGT 58.460 45.455 2.24 0.00 40.29 2.29
18 19 4.084118 GGTACTTACTCGTCTACGGCTATG 60.084 50.000 2.24 0.00 40.29 2.23
19 20 4.061596 GGTACTTACTCGTCTACGGCTAT 58.938 47.826 2.24 0.00 40.29 2.97
20 21 3.133003 AGGTACTTACTCGTCTACGGCTA 59.867 47.826 2.24 0.00 35.57 3.93
21 22 2.093235 AGGTACTTACTCGTCTACGGCT 60.093 50.000 2.24 0.00 35.57 5.52
22 23 2.284190 AGGTACTTACTCGTCTACGGC 58.716 52.381 2.24 0.00 35.57 5.68
50 51 1.812571 ACATGACTTGCGGGAAATCAC 59.187 47.619 0.00 0.00 0.00 3.06
51 52 2.083774 GACATGACTTGCGGGAAATCA 58.916 47.619 0.00 0.00 0.00 2.57
52 53 1.401905 GGACATGACTTGCGGGAAATC 59.598 52.381 0.00 0.00 0.00 2.17
53 54 1.004745 AGGACATGACTTGCGGGAAAT 59.995 47.619 0.00 0.00 0.00 2.17
54 55 0.400213 AGGACATGACTTGCGGGAAA 59.600 50.000 0.00 0.00 0.00 3.13
55 56 0.400213 AAGGACATGACTTGCGGGAA 59.600 50.000 0.00 0.00 0.00 3.97
56 57 0.036388 GAAGGACATGACTTGCGGGA 60.036 55.000 11.16 0.00 0.00 5.14
57 58 1.026718 GGAAGGACATGACTTGCGGG 61.027 60.000 11.16 0.00 0.00 6.13
58 59 1.026718 GGGAAGGACATGACTTGCGG 61.027 60.000 15.64 0.00 37.18 5.69
59 60 0.036010 AGGGAAGGACATGACTTGCG 60.036 55.000 15.64 0.00 37.18 4.85
60 61 1.003580 TCAGGGAAGGACATGACTTGC 59.996 52.381 14.48 14.48 35.80 4.01
61 62 2.038952 TGTCAGGGAAGGACATGACTTG 59.961 50.000 11.46 0.33 42.02 3.16
62 63 2.338809 TGTCAGGGAAGGACATGACTT 58.661 47.619 11.46 3.12 42.02 3.01
63 64 2.030027 TGTCAGGGAAGGACATGACT 57.970 50.000 11.46 0.00 42.02 3.41
64 65 2.859165 TTGTCAGGGAAGGACATGAC 57.141 50.000 0.00 4.27 44.11 3.06
65 66 3.689347 CAATTGTCAGGGAAGGACATGA 58.311 45.455 0.00 0.00 44.11 3.07
66 67 2.165030 GCAATTGTCAGGGAAGGACATG 59.835 50.000 7.40 0.00 44.11 3.21
67 68 2.042162 AGCAATTGTCAGGGAAGGACAT 59.958 45.455 7.40 0.00 44.11 3.06
68 69 1.425066 AGCAATTGTCAGGGAAGGACA 59.575 47.619 7.40 0.00 43.12 4.02
69 70 2.087646 GAGCAATTGTCAGGGAAGGAC 58.912 52.381 7.40 0.00 35.83 3.85
70 71 1.004745 GGAGCAATTGTCAGGGAAGGA 59.995 52.381 7.40 0.00 0.00 3.36
71 72 1.005215 AGGAGCAATTGTCAGGGAAGG 59.995 52.381 7.40 0.00 0.00 3.46
72 73 2.290514 TGAGGAGCAATTGTCAGGGAAG 60.291 50.000 7.40 0.00 0.00 3.46
73 74 1.704628 TGAGGAGCAATTGTCAGGGAA 59.295 47.619 7.40 0.00 0.00 3.97
74 75 1.280133 CTGAGGAGCAATTGTCAGGGA 59.720 52.381 13.42 0.00 34.06 4.20
75 76 1.747709 CTGAGGAGCAATTGTCAGGG 58.252 55.000 13.42 0.00 34.06 4.45
77 78 2.775911 TCCTGAGGAGCAATTGTCAG 57.224 50.000 14.03 14.03 36.89 3.51
78 79 2.092753 GGATCCTGAGGAGCAATTGTCA 60.093 50.000 19.51 1.86 40.28 3.58
79 80 2.570135 GGATCCTGAGGAGCAATTGTC 58.430 52.381 19.51 3.18 40.28 3.18
80 81 1.213926 GGGATCCTGAGGAGCAATTGT 59.786 52.381 19.51 0.00 40.28 2.71
81 82 1.493871 AGGGATCCTGAGGAGCAATTG 59.506 52.381 19.51 0.00 40.28 2.32
82 83 1.904440 AGGGATCCTGAGGAGCAATT 58.096 50.000 19.51 0.00 40.28 2.32
83 84 1.773653 GAAGGGATCCTGAGGAGCAAT 59.226 52.381 19.51 2.88 40.28 3.56
84 85 1.207791 GAAGGGATCCTGAGGAGCAA 58.792 55.000 19.51 0.00 40.28 3.91
85 86 1.045350 CGAAGGGATCCTGAGGAGCA 61.045 60.000 19.51 0.00 40.28 4.26
86 87 1.745264 CGAAGGGATCCTGAGGAGC 59.255 63.158 8.54 8.54 37.39 4.70
100 101 1.097547 CCCAACAGCCATAGCCGAAG 61.098 60.000 0.00 0.00 41.25 3.79
101 102 1.077787 CCCAACAGCCATAGCCGAA 60.078 57.895 0.00 0.00 41.25 4.30
102 103 2.589540 CCCAACAGCCATAGCCGA 59.410 61.111 0.00 0.00 41.25 5.54
103 104 2.343475 ATCCCCAACAGCCATAGCCG 62.343 60.000 0.00 0.00 41.25 5.52
104 105 0.771127 TATCCCCAACAGCCATAGCC 59.229 55.000 0.00 0.00 41.25 3.93
105 106 1.142870 TGTATCCCCAACAGCCATAGC 59.857 52.381 0.00 0.00 40.32 2.97
106 107 2.172505 TGTGTATCCCCAACAGCCATAG 59.827 50.000 0.00 0.00 0.00 2.23
107 108 2.200955 TGTGTATCCCCAACAGCCATA 58.799 47.619 0.00 0.00 0.00 2.74
108 109 0.998928 TGTGTATCCCCAACAGCCAT 59.001 50.000 0.00 0.00 0.00 4.40
109 110 0.998928 ATGTGTATCCCCAACAGCCA 59.001 50.000 0.00 0.00 0.00 4.75
110 111 3.290948 TTATGTGTATCCCCAACAGCC 57.709 47.619 0.00 0.00 0.00 4.85
111 112 5.003804 CCTATTATGTGTATCCCCAACAGC 58.996 45.833 0.00 0.00 0.00 4.40
112 113 6.187727 ACCTATTATGTGTATCCCCAACAG 57.812 41.667 0.00 0.00 0.00 3.16
147 148 5.473162 CCCATGCTTTATGATATTTCGACCA 59.527 40.000 0.00 0.00 39.21 4.02
162 163 0.105760 TTGTGTGGACCCCATGCTTT 60.106 50.000 0.00 0.00 35.28 3.51
203 204 4.948004 CCGAGTGGATAGTATGCCTGTATA 59.052 45.833 0.00 0.00 37.49 1.47
207 208 2.239400 TCCGAGTGGATAGTATGCCTG 58.761 52.381 0.00 0.00 40.17 4.85
228 229 3.055591 CGAGTGGATAGTATGCTGCTTG 58.944 50.000 0.00 2.34 0.00 4.01
255 256 0.752658 CCGAGTGGATGGTATGCTGA 59.247 55.000 0.00 0.00 37.49 4.26
305 306 4.152647 TGCTGGTCTTCATATATCCGAGT 58.847 43.478 0.00 0.00 0.00 4.18
309 310 5.474578 TGTCTGCTGGTCTTCATATATCC 57.525 43.478 0.00 0.00 0.00 2.59
329 330 1.580845 GATGCCGACTGCTTTGCTGT 61.581 55.000 1.88 1.88 43.03 4.40
362 363 2.044946 CAGCCCACTACCAAGCCC 60.045 66.667 0.00 0.00 0.00 5.19
369 370 2.105821 TGCCATAATACCAGCCCACTAC 59.894 50.000 0.00 0.00 0.00 2.73
421 422 0.341961 TATAGAGTGCACCACCCCCT 59.658 55.000 14.63 4.13 34.49 4.79
430 431 2.637872 GGGGTGGCTTATATAGAGTGCA 59.362 50.000 0.00 0.00 0.00 4.57
463 464 2.515854 GTGGAAGAAAAGAACCCCCTC 58.484 52.381 0.00 0.00 0.00 4.30
472 477 4.772100 AGAGAGAGAGAGGTGGAAGAAAAG 59.228 45.833 0.00 0.00 0.00 2.27
489 494 7.718334 TTACATGGTGTATTTGAGAGAGAGA 57.282 36.000 0.00 0.00 32.20 3.10
490 495 8.420222 AGATTACATGGTGTATTTGAGAGAGAG 58.580 37.037 0.00 0.00 32.20 3.20
491 496 8.311395 AGATTACATGGTGTATTTGAGAGAGA 57.689 34.615 0.00 0.00 32.20 3.10
500 505 5.825593 ATCCGGAGATTACATGGTGTATT 57.174 39.130 11.34 0.00 32.20 1.89
502 507 6.949463 TGTATATCCGGAGATTACATGGTGTA 59.051 38.462 18.24 0.00 33.67 2.90
507 512 8.957466 TCTTAGTGTATATCCGGAGATTACATG 58.043 37.037 18.24 10.53 33.05 3.21
508 513 9.702253 ATCTTAGTGTATATCCGGAGATTACAT 57.298 33.333 18.24 12.08 33.05 2.29
526 533 6.183360 CGGAGAGGCTTTGTTTTATCTTAGTG 60.183 42.308 0.00 0.00 0.00 2.74
530 537 4.010349 CCGGAGAGGCTTTGTTTTATCTT 58.990 43.478 0.00 0.00 0.00 2.40
590 597 0.975887 TAGTTTTAGCGGGTTCGGGT 59.024 50.000 0.00 0.00 36.79 5.28
608 615 1.249469 TGCATACGGGTGACACGGTA 61.249 55.000 13.42 1.84 35.23 4.02
621 628 5.590145 AGCATGATCTATCGAGATGCATAC 58.410 41.667 12.73 0.00 42.80 2.39
671 679 0.966920 ACTGTCGTGGGAACGATTCT 59.033 50.000 4.09 0.00 44.29 2.40
768 780 7.140522 TCAGATCCTCCATTGATGATTGTTA 57.859 36.000 0.00 0.00 0.00 2.41
772 784 5.817784 GGATCAGATCCTCCATTGATGATT 58.182 41.667 21.00 0.00 46.19 2.57
847 860 5.559148 ATGAGACTTCCTGATCCCAATAC 57.441 43.478 0.00 0.00 0.00 1.89
1035 1133 1.267806 CTGCTTTCATGTCGGCAGTTT 59.732 47.619 19.94 0.00 44.69 2.66
1046 1144 2.154462 CGGTTGACTTCCTGCTTTCAT 58.846 47.619 0.00 0.00 0.00 2.57
1134 1232 4.201980 GGTTGTGTGTGATGATGATCATGG 60.202 45.833 14.30 0.00 40.78 3.66
1138 1236 4.005650 AGTGGTTGTGTGTGATGATGATC 58.994 43.478 0.00 0.00 0.00 2.92
1412 1511 3.308117 CCCAGGTTATGCAAGACCTTACA 60.308 47.826 18.73 0.00 43.64 2.41
1418 1517 1.376609 CGGCCCAGGTTATGCAAGAC 61.377 60.000 0.00 0.00 0.00 3.01
1419 1518 1.077787 CGGCCCAGGTTATGCAAGA 60.078 57.895 0.00 0.00 0.00 3.02
1421 1520 0.540830 AAACGGCCCAGGTTATGCAA 60.541 50.000 0.00 0.00 0.00 4.08
1533 1800 3.317993 ACACACCTTGTTTGAATGGCTAC 59.682 43.478 0.00 0.00 33.09 3.58
1553 1820 3.066621 GCTGCGGAAAATATGGATCAACA 59.933 43.478 0.00 0.00 0.00 3.33
1592 1873 1.878088 CAGCTTGAAGTCAGTGCATGT 59.122 47.619 0.00 0.00 32.36 3.21
1594 1875 1.531423 CCAGCTTGAAGTCAGTGCAT 58.469 50.000 0.00 0.00 32.36 3.96
1599 1880 2.037136 CGGGCCAGCTTGAAGTCAG 61.037 63.158 4.39 0.00 0.00 3.51
1927 2236 3.141398 ACCGAGTAAAGTAGACGTGTCA 58.859 45.455 0.00 0.00 0.00 3.58
2070 2658 1.464429 GCATGCGAGTGACGTAGACG 61.464 60.000 0.00 0.00 44.60 4.18
2071 2659 1.140407 GGCATGCGAGTGACGTAGAC 61.140 60.000 12.44 0.00 44.60 2.59
2072 2660 1.138883 GGCATGCGAGTGACGTAGA 59.861 57.895 12.44 0.00 44.60 2.59
2073 2661 1.878522 GGGCATGCGAGTGACGTAG 60.879 63.158 12.44 0.00 44.60 3.51
2074 2662 2.183300 GGGCATGCGAGTGACGTA 59.817 61.111 12.44 0.00 44.60 3.57
2075 2663 4.760047 GGGGCATGCGAGTGACGT 62.760 66.667 12.44 0.00 44.60 4.34
2081 2669 4.923942 ATGAGCGGGGCATGCGAG 62.924 66.667 12.44 6.46 37.44 5.03
2082 2670 4.916293 GATGAGCGGGGCATGCGA 62.916 66.667 12.44 0.00 37.44 5.10
2118 2706 1.664321 GGGCGTCCGAGTGATGTAGT 61.664 60.000 0.00 0.00 32.20 2.73
2156 2790 0.666577 GTGAAGTAGAGGCGCGTGTT 60.667 55.000 7.63 0.00 0.00 3.32
2157 2791 1.080705 GTGAAGTAGAGGCGCGTGT 60.081 57.895 7.63 6.05 0.00 4.49
2185 2819 2.169789 GCAGAGTGACGATGCGCAT 61.170 57.895 25.66 25.66 0.00 4.73
2201 2835 0.249955 TGATGAAGACGCATCCAGCA 59.750 50.000 0.00 0.00 46.13 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.