AutoCloner

Multiple sequence alignment - TraesCS6A01G198500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G198500	chr6A	100.000	2476	0	0	1	2476	306048586	306046111	0.000000e+00	4573.0
1	TraesCS6A01G198500	chr6A	100.000	397	0	0	2805	3201	306045782	306045386	0.000000e+00	734.0
2	TraesCS6A01G198500	chr6D	97.050	1695	32	14	792	2476	237427255	237428941	0.000000e+00	2837.0
3	TraesCS6A01G198500	chr6D	96.851	1048	20	6	840	1874	316825851	316824804	0.000000e+00	1740.0
4	TraesCS6A01G198500	chr6D	92.929	396	19	6	2810	3201	237429243	237429633	4.630000e-158	568.0
5	TraesCS6A01G198500	chr6D	92.059	340	22	3	2	339	237426788	237427124	1.040000e-129	473.0
6	TraesCS6A01G198500	chr6D	88.703	239	19	2	490	720	316826141	316825903	5.230000e-73	285.0
7	TraesCS6A01G198500	chr6D	97.810	137	3	0	384	520	237427124	237427260	1.480000e-58	237.0
8	TraesCS6A01G198500	chr6D	95.652	69	3	0	1993	2061	316824522	316824454	9.390000e-21	111.0
9	TraesCS6A01G198500	chr6D	96.296	54	2	0	1904	1957	316824809	316824756	4.400000e-14	89.8
10	TraesCS6A01G198500	chr6B	97.023	1646	27	8	811	2447	364901531	364903163	0.000000e+00	2748.0
11	TraesCS6A01G198500	chr6B	96.187	1049	25	7	840	1874	507620509	507621556	0.000000e+00	1701.0
12	TraesCS6A01G198500	chr6B	91.793	329	14	5	118	439	364882749	364883071	2.270000e-121	446.0
13	TraesCS6A01G198500	chr6B	93.818	275	11	3	2810	3081	364903544	364903815	2.970000e-110	409.0
14	TraesCS6A01G198500	chr6B	93.361	241	11	1	573	813	364899703	364899938	5.080000e-93	351.0
15	TraesCS6A01G198500	chr6B	90.476	231	22	0	490	720	507620227	507620457	4.010000e-79	305.0
16	TraesCS6A01G198500	chr6B	91.453	117	8	2	3087	3201	364929629	364929745	3.310000e-35	159.0
17	TraesCS6A01G198500	chr6B	95.385	65	3	0	1994	2058	507621840	507621904	1.570000e-18	104.0
18	TraesCS6A01G198500	chr2D	83.214	840	129	12	1009	1842	419052017	419051184	0.000000e+00	760.0
19	TraesCS6A01G198500	chr2B	83.095	840	130	12	1009	1842	491355103	491354270	0.000000e+00	754.0
20	TraesCS6A01G198500	chr2A	82.660	842	130	15	1009	1842	570724218	570725051	0.000000e+00	732.0
21	TraesCS6A01G198500	chr4D	98.507	67	1	0	1621	1687	177490196	177490130	5.610000e-23	119.0
22	TraesCS6A01G198500	chr7B	97.015	67	2	0	1621	1687	348950684	348950750	2.610000e-21	113.0
23	TraesCS6A01G198500	chr7B	97.368	38	0	1	263	299	539305613	539305576	2.670000e-06	63.9
24	TraesCS6A01G198500	chr3B	76.042	192	32	7	110	298	330782117	330782297	1.580000e-13	87.9
25	TraesCS6A01G198500	chr7D	97.368	38	0	1	263	299	175819491	175819454	2.670000e-06	63.9
26	TraesCS6A01G198500	chr5B	100.000	29	0	0	763	791	599227778	599227750	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G198500	chr6A	306045386	306048586	3200	True	2653.500000	4573	100.0000	1	3201	2	chr6A.!!$R1	3200
1	TraesCS6A01G198500	chr6D	237426788	237429633	2845	False	1028.750000	2837	94.9620	2	3201	4	chr6D.!!$F1	3199
2	TraesCS6A01G198500	chr6D	316824454	316826141	1687	True	556.450000	1740	94.3755	490	2061	4	chr6D.!!$R1	1571
3	TraesCS6A01G198500	chr6B	364899703	364903815	4112	False	1169.333333	2748	94.7340	573	3081	3	chr6B.!!$F3	2508
4	TraesCS6A01G198500	chr6B	507620227	507621904	1677	False	703.333333	1701	94.0160	490	2058	3	chr6B.!!$F4	1568
5	TraesCS6A01G198500	chr2D	419051184	419052017	833	True	760.000000	760	83.2140	1009	1842	1	chr2D.!!$R1	833
6	TraesCS6A01G198500	chr2B	491354270	491355103	833	True	754.000000	754	83.0950	1009	1842	1	chr2B.!!$R1	833
7	TraesCS6A01G198500	chr2A	570724218	570725051	833	False	732.000000	732	82.6600	1009	1842	1	chr2A.!!$F1	833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
143	144	0.404040	TCACCCCCAATGAACTCACC	59.596	55.0	0.00	0.00	4.02	F
187	188	0.447801	ATTTGCAGCGACGATCCAAC	59.552	50.0	0.00	0.00	3.77	F
210	211	0.465460	AGGCAGCGAAACAAAGACCA	60.465	50.0	0.00	0.00	4.02	F
1272	2912	0.466124	CCTCCGGAACCAAGGATCTC	59.534	60.0	5.23	35.75	2.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1272	2912	1.153489	CGTGAGGCTGACCATCTGG	60.153	63.158	39.06	3.86	R
1888	3528	1.742761	ATTGGGCATCTGAAGTGACG	58.257	50.000	0.00	4.35	R
2111	3990	3.370840	TGCCTCTGAGCAATAACCATT	57.629	42.857	40.56	3.16	R
3112	5033	0.250338	ACTCCCTCACGGAACAAAGC	60.250	55.000	41.40	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	1.951130	CAAGGACGCGCGATGCTAT	60.951	57.895	39.36	13.60	43.27	2.97
36	37	1.951130	AAGGACGCGCGATGCTATG	60.951	57.895	39.36	4.66	43.27	2.23
48	49	1.377072	TGCTATGCGCACACATGGT	60.377	52.632	14.90	0.00	45.47	3.55
61	62	0.842030	ACATGGTGCCCAAGGAGAGA	60.842	55.000	0.00	0.00	36.95	3.10
65	66	1.617947	GGTGCCCAAGGAGAGATCGT	61.618	60.000	0.00	0.00	0.00	3.73
86	87	0.516877	CGCGACCAAGAAAGCAATGA	59.483	50.000	0.00	0.00	0.00	2.57
118	119	4.007644	CTGGACGCTGAGCCCACA	62.008	66.667	0.00	0.00	0.00	4.17
143	144	0.404040	TCACCCCCAATGAACTCACC	59.596	55.000	0.00	0.00	0.00	4.02
163	164	2.170770	CACACGGTGAAAAACGACAAC	58.829	47.619	16.29	0.00	35.23	3.32
187	188	0.447801	ATTTGCAGCGACGATCCAAC	59.552	50.000	0.00	0.00	0.00	3.77
190	191	3.071459	GCAGCGACGATCCAACGTG	62.071	63.158	0.00	0.00	46.52	4.49
210	211	0.465460	AGGCAGCGAAACAAAGACCA	60.465	50.000	0.00	0.00	0.00	4.02
217	218	2.540973	GCGAAACAAAGACCAGGTTGAC	60.541	50.000	0.00	0.00	0.00	3.18
218	219	2.032924	CGAAACAAAGACCAGGTTGACC	59.967	50.000	0.00	0.00	0.00	4.02
229	230	3.650942	ACCAGGTTGACCAAGATCTAACA	59.349	43.478	0.00	0.00	38.89	2.41
256	257	1.153168	CGATGCAAATCGGGGGAGT	60.153	57.895	1.69	0.00	40.12	3.85
338	339	8.288208	CCTTGCTTGCTACTAATCAATCTTATG	58.712	37.037	0.00	0.00	0.00	1.90
339	340	8.737168	TTGCTTGCTACTAATCAATCTTATGT	57.263	30.769	0.00	0.00	0.00	2.29
340	341	8.146479	TGCTTGCTACTAATCAATCTTATGTG	57.854	34.615	0.00	0.00	0.00	3.21
341	342	7.227314	TGCTTGCTACTAATCAATCTTATGTGG	59.773	37.037	0.00	0.00	0.00	4.17
342	343	7.442364	GCTTGCTACTAATCAATCTTATGTGGA	59.558	37.037	0.00	0.00	0.00	4.02
343	344	9.499479	CTTGCTACTAATCAATCTTATGTGGAT	57.501	33.333	0.00	0.00	0.00	3.41
344	345	9.851686	TTGCTACTAATCAATCTTATGTGGATT	57.148	29.630	0.00	0.00	34.21	3.01
345	346	9.851686	TGCTACTAATCAATCTTATGTGGATTT	57.148	29.630	0.00	0.00	31.90	2.17
369	370	8.982091	TTCATTTATGAAATATACACCCCGAA	57.018	30.769	2.77	0.00	43.26	4.30
370	371	8.615878	TCATTTATGAAATATACACCCCGAAG	57.384	34.615	0.00	0.00	33.08	3.79
371	372	7.663905	TCATTTATGAAATATACACCCCGAAGG	59.336	37.037	0.00	0.00	40.27	3.46
461	462	9.623000	GCCTCTTTTATTAGAGTATTTTACCCA	57.377	33.333	0.00	0.00	40.04	4.51
483	484	7.938490	ACCCAATCATGCTCAATTTTAAAAACT	59.062	29.630	4.44	0.00	0.00	2.66
484	485	8.231837	CCCAATCATGCTCAATTTTAAAAACTG	58.768	33.333	4.44	5.96	0.00	3.16
550	551	4.132122	ACTCCCTTTCCATCCAAACAAT	57.868	40.909	0.00	0.00	0.00	2.71
552	553	5.264395	ACTCCCTTTCCATCCAAACAATAG	58.736	41.667	0.00	0.00	0.00	1.73
556	557	5.893255	CCCTTTCCATCCAAACAATAGATGA	59.107	40.000	0.91	0.00	39.84	2.92
560	561	9.525409	CTTTCCATCCAAACAATAGATGAAATC	57.475	33.333	0.91	0.00	46.04	2.17
593	594	8.945193	TCCCTTATATTCCAAGTGCTAAATACT	58.055	33.333	0.00	0.00	0.00	2.12
675	684	3.443052	ACAATTGAGCCAATCCAATGGA	58.557	40.909	13.59	3.67	43.54	3.41
705	714	9.034800	ACCATTTTTCTCTTAAGCAATCCAATA	57.965	29.630	0.00	0.00	0.00	1.90
715	724	3.907221	AGCAATCCAATAGCAAGACCAT	58.093	40.909	0.00	0.00	0.00	3.55
716	725	4.284178	AGCAATCCAATAGCAAGACCATT	58.716	39.130	0.00	0.00	0.00	3.16
717	726	4.713321	AGCAATCCAATAGCAAGACCATTT	59.287	37.500	0.00	0.00	0.00	2.32
718	727	5.188359	AGCAATCCAATAGCAAGACCATTTT	59.812	36.000	0.00	0.00	0.00	1.82
719	728	5.876460	GCAATCCAATAGCAAGACCATTTTT	59.124	36.000	0.00	0.00	0.00	1.94
720	729	6.036408	GCAATCCAATAGCAAGACCATTTTTC	59.964	38.462	0.00	0.00	0.00	2.29
721	730	7.325694	CAATCCAATAGCAAGACCATTTTTCT	58.674	34.615	0.00	0.00	0.00	2.52
722	731	6.515272	TCCAATAGCAAGACCATTTTTCTC	57.485	37.500	0.00	0.00	0.00	2.87
723	732	6.248433	TCCAATAGCAAGACCATTTTTCTCT	58.752	36.000	0.00	0.00	0.00	3.10
724	733	6.721208	TCCAATAGCAAGACCATTTTTCTCTT	59.279	34.615	0.00	0.00	0.00	2.85
725	734	7.888021	TCCAATAGCAAGACCATTTTTCTCTTA	59.112	33.333	0.00	0.00	0.00	2.10
726	735	8.522830	CCAATAGCAAGACCATTTTTCTCTTAA	58.477	33.333	0.00	0.00	0.00	1.85
727	736	9.565213	CAATAGCAAGACCATTTTTCTCTTAAG	57.435	33.333	0.00	0.00	0.00	1.85
728	737	6.018589	AGCAAGACCATTTTTCTCTTAAGC	57.981	37.500	0.00	0.00	0.00	3.09
729	738	5.536161	AGCAAGACCATTTTTCTCTTAAGCA	59.464	36.000	0.00	0.00	0.00	3.91
730	739	6.040842	AGCAAGACCATTTTTCTCTTAAGCAA	59.959	34.615	0.00	0.00	0.00	3.91
731	740	6.144563	GCAAGACCATTTTTCTCTTAAGCAAC	59.855	38.462	0.00	0.00	0.00	4.17
732	741	6.332735	AGACCATTTTTCTCTTAAGCAACC	57.667	37.500	0.00	0.00	0.00	3.77
760	787	4.796038	AAGATGAAATGGCAAGACCTTG	57.204	40.909	5.44	5.44	43.14	3.61
761	788	3.094572	AGATGAAATGGCAAGACCTTGG	58.905	45.455	11.26	0.00	40.74	3.61
966	2606	0.887387	GCGCAGAACTACCCCAAACA	60.887	55.000	0.30	0.00	0.00	2.83
1272	2912	0.466124	CCTCCGGAACCAAGGATCTC	59.534	60.000	5.23	0.00	35.75	2.75
1888	3528	4.067972	TCCAGTTGGTCACAGTACTTTC	57.932	45.455	0.00	0.00	36.34	2.62
1896	3536	3.734735	GGTCACAGTACTTTCGTCACTTC	59.265	47.826	0.00	0.00	0.00	3.01
2075	3954	6.412072	GTGCTTATGATGCGTTCTTGAATTAC	59.588	38.462	0.00	0.00	0.00	1.89
2076	3955	6.093357	TGCTTATGATGCGTTCTTGAATTACA	59.907	34.615	0.00	0.00	0.00	2.41
2111	3990	1.891933	TTGCAGGGATATGGTCCTCA	58.108	50.000	0.00	0.00	46.91	3.86
2381	4261	8.592105	ACTAGTGAAGTATACTAGAACTAGCG	57.408	38.462	28.57	18.22	46.71	4.26
2395	4275	3.260475	ACTAGCGTATTTGACCATGCA	57.740	42.857	0.00	0.00	0.00	3.96
2402	4282	4.114073	CGTATTTGACCATGCATTGCAAT	58.886	39.130	16.46	5.99	43.62	3.56
2451	4369	6.296026	ACGTATACTTTACCCTCACCGTATA	58.704	40.000	0.56	0.00	0.00	1.47
2868	4786	2.041115	GCTTGGCCGGGAGTTCTTC	61.041	63.158	2.18	0.00	0.00	2.87
3049	4970	3.066064	TCTCGACCACAAAAACCAATGTG	59.934	43.478	0.00	0.00	45.06	3.21

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	1.330655	GGACGATCTCTCCTTGGGCA	61.331	60.000	0.00	0.00	0.00	5.36
65	66	0.605319	ATTGCTTTCTTGGTCGCGGA	60.605	50.000	6.13	0.00	0.00	5.54
76	77	0.968405	TTGGCTGGGTCATTGCTTTC	59.032	50.000	0.00	0.00	0.00	2.62
102	103	4.007644	CTGTGGGCTCAGCGTCCA	62.008	66.667	0.00	0.00	0.00	4.02
103	104	4.767255	CCTGTGGGCTCAGCGTCC	62.767	72.222	0.00	0.00	34.47	4.79
106	107	3.320879	ATGACCTGTGGGCTCAGCG	62.321	63.158	0.00	0.00	35.63	5.18
117	118	0.625316	TCATTGGGGGTGATGACCTG	59.375	55.000	0.00	0.00	42.66	4.00
118	119	1.005924	GTTCATTGGGGGTGATGACCT	59.994	52.381	0.00	0.00	42.66	3.85
143	144	2.170770	GTTGTCGTTTTTCACCGTGTG	58.829	47.619	0.00	0.00	34.45	3.82
156	157	2.094258	CGCTGCAAATCTATGTTGTCGT	59.906	45.455	0.00	0.00	0.00	4.34
163	164	2.156504	GGATCGTCGCTGCAAATCTATG	59.843	50.000	0.00	0.00	0.00	2.23
187	188	0.384725	CTTTGTTTCGCTGCCTCACG	60.385	55.000	0.00	0.00	0.00	4.35
190	191	0.238553	GGTCTTTGTTTCGCTGCCTC	59.761	55.000	0.00	0.00	0.00	4.70
210	211	4.322049	CGTCTGTTAGATCTTGGTCAACCT	60.322	45.833	0.00	0.00	36.82	3.50
217	218	4.921515	TCGTTTTCGTCTGTTAGATCTTGG	59.078	41.667	0.00	0.00	44.46	3.61
218	219	6.461816	CATCGTTTTCGTCTGTTAGATCTTG	58.538	40.000	0.00	0.00	44.46	3.02
229	230	3.103793	CGATTTGCATCGTTTTCGTCT	57.896	42.857	1.50	0.00	46.23	4.18
256	257	1.295423	GCAACTCGCCTCCTTGGTA	59.705	57.895	0.00	0.00	38.35	3.25
344	345	8.982091	TTCGGGGTGTATATTTCATAAATGAA	57.018	30.769	1.23	1.23	44.42	2.57
345	346	7.663905	CCTTCGGGGTGTATATTTCATAAATGA	59.336	37.037	0.00	0.00	34.44	2.57
346	347	7.816640	CCTTCGGGGTGTATATTTCATAAATG	58.183	38.462	0.00	0.00	32.38	2.32
347	348	7.996098	CCTTCGGGGTGTATATTTCATAAAT	57.004	36.000	0.00	0.00	34.90	1.40
369	370	4.079827	CCTCTCCAAGGCATCCCT	57.920	61.111	0.00	0.00	45.77	4.20
377	378	1.347707	TGTAAGTGGTGCCTCTCCAAG	59.652	52.381	0.00	0.00	36.68	3.61
378	379	1.429930	TGTAAGTGGTGCCTCTCCAA	58.570	50.000	0.00	0.00	36.68	3.53
379	380	1.555075	GATGTAAGTGGTGCCTCTCCA	59.445	52.381	0.00	0.00	0.00	3.86
380	381	1.834263	AGATGTAAGTGGTGCCTCTCC	59.166	52.381	0.00	0.00	0.00	3.71
381	382	3.618690	AAGATGTAAGTGGTGCCTCTC	57.381	47.619	0.00	0.00	0.00	3.20
382	383	3.452627	CCTAAGATGTAAGTGGTGCCTCT	59.547	47.826	0.00	0.00	0.00	3.69
483	484	8.865590	TTCGTAATTTCATATTGTCTCGATCA	57.134	30.769	0.00	0.00	0.00	2.92
484	485	9.732893	CATTCGTAATTTCATATTGTCTCGATC	57.267	33.333	0.00	0.00	0.00	3.69
528	529	4.733077	TTGTTTGGATGGAAAGGGAGTA	57.267	40.909	0.00	0.00	0.00	2.59
529	530	3.611025	TTGTTTGGATGGAAAGGGAGT	57.389	42.857	0.00	0.00	0.00	3.85
531	532	5.528600	TCTATTGTTTGGATGGAAAGGGA	57.471	39.130	0.00	0.00	0.00	4.20
533	534	7.408756	TTCATCTATTGTTTGGATGGAAAGG	57.591	36.000	0.00	0.00	37.85	3.11
536	537	8.592529	TGATTTCATCTATTGTTTGGATGGAA	57.407	30.769	0.00	0.00	38.71	3.53
552	553	9.852091	GAATATAAGGGAAGCAATGATTTCATC	57.148	33.333	0.00	0.00	35.10	2.92
556	557	8.551682	TTGGAATATAAGGGAAGCAATGATTT	57.448	30.769	0.00	0.00	0.00	2.17
560	561	6.736794	GCACTTGGAATATAAGGGAAGCAATG	60.737	42.308	0.00	0.00	30.02	2.82
567	568	8.945193	AGTATTTAGCACTTGGAATATAAGGGA	58.055	33.333	0.00	0.00	30.02	4.20
593	594	3.780804	TTCTAGTGTTTGGCTGGCTAA	57.219	42.857	2.00	0.00	0.00	3.09
657	666	4.161001	GTCTTTCCATTGGATTGGCTCAAT	59.839	41.667	6.15	0.67	36.72	2.57
675	684	8.090831	GGATTGCTTAAGAGAAAAATGGTCTTT	58.909	33.333	6.67	0.00	32.73	2.52
705	714	5.536161	TGCTTAAGAGAAAAATGGTCTTGCT	59.464	36.000	6.67	0.00	32.73	3.91
763	790	5.412594	GCTCTGTTTGGATGTAGACATTCAA	59.587	40.000	11.59	11.59	46.91	2.69
764	791	4.937620	GCTCTGTTTGGATGTAGACATTCA	59.062	41.667	0.00	0.00	39.96	2.57
966	2606	0.472925	GGGGGTGGATTTTGGTTGGT	60.473	55.000	0.00	0.00	0.00	3.67
1042	2682	3.741476	GGCAGCCACCTTTGCGAG	61.741	66.667	6.55	0.00	41.17	5.03
1272	2912	1.153489	CGTGAGGCTGACCATCTGG	60.153	63.158	0.00	0.00	39.06	3.86
1888	3528	1.742761	ATTGGGCATCTGAAGTGACG	58.257	50.000	0.00	0.00	0.00	4.35
1896	3536	4.467769	AGTGAAGGATAATTGGGCATCTG	58.532	43.478	0.00	0.00	0.00	2.90
2075	3954	7.555087	TCCCTGCAATAATAAAAAGGTTCATG	58.445	34.615	0.00	0.00	0.00	3.07
2076	3955	7.732222	TCCCTGCAATAATAAAAAGGTTCAT	57.268	32.000	0.00	0.00	0.00	2.57
2111	3990	3.370840	TGCCTCTGAGCAATAACCATT	57.629	42.857	0.00	0.00	40.56	3.16
2381	4261	4.271533	CCATTGCAATGCATGGTCAAATAC	59.728	41.667	30.15	0.00	38.76	1.89
2426	4306	4.523083	ACGGTGAGGGTAAAGTATACGTA	58.477	43.478	0.00	0.00	0.00	3.57
2811	4729	8.331931	ACATGATCTCTACCATTAAAAGGGTA	57.668	34.615	0.00	6.15	42.05	3.69
2812	4730	7.213178	ACATGATCTCTACCATTAAAAGGGT	57.787	36.000	0.00	4.28	46.20	4.34
2832	4750	4.082787	CCAAGCTACCCTTTGTTGTACATG	60.083	45.833	0.00	0.00	0.00	3.21
2927	4845	2.332063	ACCAATGCCATCTTACCTCG	57.668	50.000	0.00	0.00	0.00	4.63
2934	4852	1.651987	CGAACGTACCAATGCCATCT	58.348	50.000	0.00	0.00	0.00	2.90
3031	4952	2.898705	TGCACATTGGTTTTTGTGGTC	58.101	42.857	5.33	0.00	42.72	4.02
3049	4970	9.250624	CAGAAGGATTACAAGTTACTAGTATGC	57.749	37.037	2.79	0.30	0.00	3.14
3112	5033	0.250338	ACTCCCTCACGGAACAAAGC	60.250	55.000	0.00	0.00	41.40	3.51
3141	5063	5.124457	CCTTCCACACAGAGAACAAATATGG	59.876	44.000	0.00	0.00	0.00	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.