Multiple sequence alignment - TraesCS6A01G197900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G197900 chr6A 100.000 5667 0 0 1 5667 299986807 299981141 0.000000e+00 10466.0
1 TraesCS6A01G197900 chr6A 95.932 5408 206 11 1 5397 161778427 161783831 0.000000e+00 8756.0
2 TraesCS6A01G197900 chr6A 96.170 5170 182 9 242 5396 233959881 233954713 0.000000e+00 8436.0
3 TraesCS6A01G197900 chr6A 92.308 273 21 0 5395 5667 435693623 435693895 6.890000e-104 388.0
4 TraesCS6A01G197900 chr6A 91.575 273 23 0 5395 5667 312221330 312221058 1.490000e-100 377.0
5 TraesCS6A01G197900 chr6A 92.683 246 17 1 3 247 233960305 233960060 2.510000e-93 353.0
6 TraesCS6A01G197900 chr6A 93.333 75 5 0 1682 1756 209391425 209391351 1.670000e-20 111.0
7 TraesCS6A01G197900 chr6A 96.970 33 1 0 894 926 161779216 161779248 7.930000e-04 56.5
8 TraesCS6A01G197900 chr6A 96.970 33 1 0 788 820 161779323 161779355 7.930000e-04 56.5
9 TraesCS6A01G197900 chr6A 96.970 33 1 0 788 820 233959226 233959194 7.930000e-04 56.5
10 TraesCS6A01G197900 chr6A 96.970 33 1 0 894 926 233959333 233959301 7.930000e-04 56.5
11 TraesCS6A01G197900 chr6A 96.970 33 1 0 788 820 299985914 299985882 7.930000e-04 56.5
12 TraesCS6A01G197900 chr6A 96.970 33 1 0 894 926 299986020 299985988 7.930000e-04 56.5
13 TraesCS6A01G197900 chr6B 92.750 1531 104 6 1604 3128 565749750 565751279 0.000000e+00 2206.0
14 TraesCS6A01G197900 chr6B 92.662 586 40 3 929 1511 565749171 565749756 0.000000e+00 841.0
15 TraesCS6A01G197900 chr6B 84.932 657 63 13 219 842 565748514 565749167 2.880000e-177 632.0
16 TraesCS6A01G197900 chr6B 94.737 266 12 1 3891 4154 565751272 565751537 4.090000e-111 412.0
17 TraesCS6A01G197900 chr6B 75.705 745 137 27 4641 5357 565753361 565754089 3.270000e-87 333.0
18 TraesCS6A01G197900 chr6B 83.395 271 29 13 3284 3551 559527704 559527961 2.640000e-58 237.0
19 TraesCS6A01G197900 chr6B 93.333 75 5 0 1682 1756 278674697 278674623 1.670000e-20 111.0
20 TraesCS6A01G197900 chr6B 90.000 80 6 2 1687 1766 491624720 491624643 1.000000e-17 102.0
21 TraesCS6A01G197900 chr4A 92.745 1530 106 4 1604 3128 373806242 373807771 0.000000e+00 2206.0
22 TraesCS6A01G197900 chr4A 87.057 649 57 10 220 842 373801344 373801991 0.000000e+00 708.0
23 TraesCS6A01G197900 chr4A 90.959 365 30 3 1150 1511 373805884 373806248 6.600000e-134 488.0
24 TraesCS6A01G197900 chr4A 95.489 266 10 1 3891 4154 373807764 373808029 1.890000e-114 424.0
25 TraesCS6A01G197900 chr4A 92.308 221 12 3 926 1146 373801992 373802207 5.510000e-80 309.0
26 TraesCS6A01G197900 chr4A 77.477 444 86 12 4958 5396 300980779 300980345 2.620000e-63 254.0
27 TraesCS6A01G197900 chr3A 92.092 1530 114 6 1604 3128 730970272 730971799 0.000000e+00 2148.0
28 TraesCS6A01G197900 chr3A 92.150 586 43 3 929 1511 730969693 730970278 0.000000e+00 824.0
29 TraesCS6A01G197900 chr3A 94.737 266 12 1 3891 4154 730971792 730972057 4.090000e-111 412.0
30 TraesCS6A01G197900 chr3A 91.941 273 22 0 5395 5667 440427338 440427610 3.200000e-102 383.0
31 TraesCS6A01G197900 chr3A 91.575 273 23 0 5395 5667 665305288 665305016 1.490000e-100 377.0
32 TraesCS6A01G197900 chr3A 91.575 273 23 0 5395 5667 668150160 668150432 1.490000e-100 377.0
33 TraesCS6A01G197900 chr3A 83.041 342 55 3 4449 4788 703993359 703993699 1.980000e-79 307.0
34 TraesCS6A01G197900 chr3A 73.143 875 176 47 4557 5396 109787190 109788040 5.630000e-65 259.0
35 TraesCS6A01G197900 chr7D 91.722 1510 93 10 3891 5396 213068124 213069605 0.000000e+00 2067.0
36 TraesCS6A01G197900 chr7D 94.170 1355 66 4 1776 3125 213066782 213068128 0.000000e+00 2052.0
37 TraesCS6A01G197900 chr7D 90.426 846 77 4 1 842 213065324 213066169 0.000000e+00 1110.0
38 TraesCS6A01G197900 chr7D 93.871 620 34 4 926 1542 213066170 213066788 0.000000e+00 931.0
39 TraesCS6A01G197900 chr7D 73.616 777 162 20 4628 5396 608333053 608333794 5.630000e-65 259.0
40 TraesCS6A01G197900 chr7A 95.195 770 28 5 3129 3890 178042244 178041476 0.000000e+00 1208.0
41 TraesCS6A01G197900 chr7A 80.307 391 60 13 4445 4825 415459816 415459433 4.320000e-71 279.0
42 TraesCS6A01G197900 chr2A 93.407 273 18 0 5395 5667 281005067 281005339 6.840000e-109 405.0
43 TraesCS6A01G197900 chr5A 93.333 270 18 0 5398 5667 145227032 145226763 3.180000e-107 399.0
44 TraesCS6A01G197900 chr5A 91.882 271 22 0 5397 5667 223853160 223853430 4.140000e-101 379.0
45 TraesCS6A01G197900 chr5A 83.432 338 54 2 4449 4785 94905008 94904672 4.260000e-81 313.0
46 TraesCS6A01G197900 chr1A 92.674 273 20 0 5395 5667 128197761 128197489 1.480000e-105 394.0
47 TraesCS6A01G197900 chr1A 80.409 342 62 5 4449 4788 266692028 266691690 7.290000e-64 255.0
48 TraesCS6A01G197900 chr5D 74.899 745 156 24 4661 5395 426051722 426050999 1.530000e-80 311.0
49 TraesCS6A01G197900 chr5D 80.857 350 49 12 4449 4788 149475902 149475561 5.630000e-65 259.0
50 TraesCS6A01G197900 chr2B 82.808 349 43 12 3201 3534 516729135 516729481 4.290000e-76 296.0
51 TraesCS6A01G197900 chr7B 75.493 608 135 10 4794 5397 648432520 648431923 9.290000e-73 285.0
52 TraesCS6A01G197900 chr4B 81.871 342 59 3 4449 4788 90148897 90148557 9.290000e-73 285.0
53 TraesCS6A01G197900 chr4B 86.735 98 8 5 1682 1774 270831671 270831768 2.790000e-18 104.0
54 TraesCS6A01G197900 chr3D 85.609 271 30 6 3284 3551 2908772 2908508 5.590000e-70 276.0
55 TraesCS6A01G197900 chr1B 80.349 229 41 4 5170 5396 19973467 19973693 2.710000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G197900 chr6A 299981141 299986807 5666 True 3526.333333 10466 97.98000 1 5667 3 chr6A.!!$R4 5666
1 TraesCS6A01G197900 chr6A 161778427 161783831 5404 False 8756.000000 8756 95.93200 1 5397 1 chr6A.!!$F1 5396
2 TraesCS6A01G197900 chr6A 233954713 233960305 5592 True 2225.500000 8436 95.69825 3 5396 4 chr6A.!!$R3 5393
3 TraesCS6A01G197900 chr6B 565748514 565754089 5575 False 884.800000 2206 88.15720 219 5357 5 chr6B.!!$F2 5138
4 TraesCS6A01G197900 chr4A 373801344 373808029 6685 False 827.000000 2206 91.71160 220 4154 5 chr4A.!!$F1 3934
5 TraesCS6A01G197900 chr3A 730969693 730972057 2364 False 1128.000000 2148 92.99300 929 4154 3 chr3A.!!$F5 3225
6 TraesCS6A01G197900 chr3A 109787190 109788040 850 False 259.000000 259 73.14300 4557 5396 1 chr3A.!!$F1 839
7 TraesCS6A01G197900 chr7D 213065324 213069605 4281 False 1540.000000 2067 92.54725 1 5396 4 chr7D.!!$F2 5395
8 TraesCS6A01G197900 chr7D 608333053 608333794 741 False 259.000000 259 73.61600 4628 5396 1 chr7D.!!$F1 768
9 TraesCS6A01G197900 chr7A 178041476 178042244 768 True 1208.000000 1208 95.19500 3129 3890 1 chr7A.!!$R1 761
10 TraesCS6A01G197900 chr5D 426050999 426051722 723 True 311.000000 311 74.89900 4661 5395 1 chr5D.!!$R2 734
11 TraesCS6A01G197900 chr7B 648431923 648432520 597 True 285.000000 285 75.49300 4794 5397 1 chr7B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 941 0.252742 TCCTCCTCCCTCCTTTCCAC 60.253 60.0 0.00 0.00 0.00 4.02 F
1667 5572 0.036010 TTCTTAGCTGCAGGTGCTCC 60.036 55.0 28.10 3.47 41.46 4.70 F
1997 5904 0.478072 TCACCCACTTTCATGCCTGT 59.522 50.0 0.00 0.00 0.00 4.00 F
2804 6713 1.621301 CGAGCCAGTCAGCGACAAAG 61.621 60.0 10.52 1.51 38.01 2.77 F
3771 7707 0.751643 GGCTGTTGGAGTGTTGGTGT 60.752 55.0 0.00 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2603 6512 3.081061 GTGGCACATTAGGATTGACACA 58.919 45.455 13.86 0.00 44.52 3.72 R
2779 6688 2.347322 GCTGACTGGCTCGTCCTCT 61.347 63.158 5.33 0.00 35.26 3.69 R
3699 7630 2.620585 TGGACATAGCGAGATGACAGAG 59.379 50.000 4.19 0.00 0.00 3.35 R
3929 7866 2.676232 AGCAACAGCTAGGCTCTCA 58.324 52.632 0.00 0.00 36.40 3.27 R
5402 10799 0.031449 GACGGAGCCTCTGATGCTAC 59.969 60.000 7.73 7.24 39.69 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.001393 GGGGGAAATCAACTGCCGA 60.001 57.895 0.00 0.00 0.00 5.54
52 53 2.076863 GTGAACGGCAAACTATCTGCT 58.923 47.619 0.00 0.00 39.82 4.24
100 101 0.475044 TTTAAGGGCGGGTGAACTGT 59.525 50.000 0.00 0.00 0.00 3.55
174 175 4.585879 GTTTTAGGTCACCTTATCTGCCA 58.414 43.478 0.00 0.00 34.61 4.92
194 196 2.047830 AGGAGAACTGAACCCGACTTT 58.952 47.619 0.00 0.00 0.00 2.66
217 219 1.069090 CTGCCGGTACTGTGTGTGT 59.931 57.895 1.90 0.00 0.00 3.72
254 440 6.152831 AGCCAAAAGATAAAAGAAATAGCCGT 59.847 34.615 0.00 0.00 0.00 5.68
271 457 2.203640 TCGCACCTCACCCTCACT 60.204 61.111 0.00 0.00 0.00 3.41
291 477 4.019321 CACTTCTTCTATTCCCCCAAGTCA 60.019 45.833 0.00 0.00 0.00 3.41
358 553 2.577059 CAACCTTCGCCGCTCCTA 59.423 61.111 0.00 0.00 0.00 2.94
362 557 2.577059 CTTCGCCGCTCCTAACCA 59.423 61.111 0.00 0.00 0.00 3.67
449 666 2.759795 GCACCTGGCTTCCTTCCT 59.240 61.111 0.00 0.00 40.25 3.36
453 670 0.474660 ACCTGGCTTCCTTCCTGACT 60.475 55.000 0.00 0.00 0.00 3.41
511 728 2.116772 TCGTCCTCCGGTTGGTCT 59.883 61.111 14.11 0.00 37.11 3.85
529 746 2.756207 GTCTCTAGAGGAAACGGCTTCT 59.244 50.000 19.67 0.00 34.17 2.85
541 758 1.823976 GGCTTCTACCCTCCTTCCG 59.176 63.158 0.00 0.00 0.00 4.30
544 761 1.134759 GCTTCTACCCTCCTTCCGAAC 60.135 57.143 0.00 0.00 0.00 3.95
560 777 0.535335 GAACCCTGTGAGCACGGATA 59.465 55.000 10.89 0.00 40.06 2.59
576 793 2.456287 GATATGGCTCCTCCCACCGC 62.456 65.000 0.00 0.00 37.79 5.68
718 937 1.974197 GCATCTCCTCCTCCCTCCTTT 60.974 57.143 0.00 0.00 0.00 3.11
722 941 0.252742 TCCTCCTCCCTCCTTTCCAC 60.253 60.000 0.00 0.00 0.00 4.02
868 1088 4.249638 TGGCTCATTTATATATGGGGGC 57.750 45.455 5.35 9.62 0.00 5.80
979 1200 1.687612 CCTTGGTGTGATGGCTCCT 59.312 57.895 0.00 0.00 0.00 3.69
1146 1373 9.937175 GCAAATCTTCTATACATTGTTTAGGTC 57.063 33.333 12.49 0.00 0.00 3.85
1161 5061 0.456221 AGGTCGCAGGTATCGTCTTG 59.544 55.000 0.00 0.00 0.00 3.02
1175 5075 8.316214 AGGTATCGTCTTGTTGGTTTAGAATAA 58.684 33.333 0.00 0.00 0.00 1.40
1385 5290 9.996554 TGAAGTCTGATAAAACTAGAACAATGA 57.003 29.630 0.00 0.00 0.00 2.57
1529 5434 3.053831 GCAAGGTACAAGTTGCTCCTA 57.946 47.619 16.44 0.00 44.68 2.94
1566 5471 3.405831 TGCCTGTGCTTGCTATGATATC 58.594 45.455 0.00 0.00 38.71 1.63
1568 5473 3.436015 GCCTGTGCTTGCTATGATATCTG 59.564 47.826 3.98 0.00 33.53 2.90
1601 5506 3.303938 TGCTCTTTCTCCTCTCCTATGG 58.696 50.000 0.00 0.00 0.00 2.74
1615 5520 6.502158 CCTCTCCTATGGTTTTATGTCCCTAT 59.498 42.308 0.00 0.00 0.00 2.57
1636 5541 4.486125 TTCTACATGCCATGTCAAGCTA 57.514 40.909 14.74 0.00 43.67 3.32
1660 5565 4.199432 TCCTCTTCTTTCTTAGCTGCAG 57.801 45.455 10.11 10.11 0.00 4.41
1667 5572 0.036010 TTCTTAGCTGCAGGTGCTCC 60.036 55.000 28.10 3.47 41.46 4.70
1739 5644 7.923878 GGAAGTTTAAATTAGACTGCCAAAACA 59.076 33.333 14.09 0.00 38.72 2.83
1807 5714 6.054860 ACTGAGCTCTTGTTGTATATTGGT 57.945 37.500 16.19 0.00 0.00 3.67
1996 5903 1.843368 ATCACCCACTTTCATGCCTG 58.157 50.000 0.00 0.00 0.00 4.85
1997 5904 0.478072 TCACCCACTTTCATGCCTGT 59.522 50.000 0.00 0.00 0.00 4.00
2040 5947 9.834628 TTAGTGAAAAGTAAAAACTGACAACTG 57.165 29.630 0.00 0.00 0.00 3.16
2057 5964 6.548622 TGACAACTGTACTTACTGGTAGACTT 59.451 38.462 0.00 0.00 0.00 3.01
2091 5998 5.360144 GCAAGTATAGGGTCTTGTAGACTGA 59.640 44.000 6.77 0.00 44.46 3.41
2125 6032 7.562088 AGAAATTAAAACCAGTCCAAACAGGTA 59.438 33.333 0.00 0.00 43.91 3.08
2133 6040 5.072600 ACCAGTCCAAACAGGTACTTTATGA 59.927 40.000 0.00 0.00 42.97 2.15
2265 6172 4.340950 TCCTGTCGTAATGATAGTCATGCA 59.659 41.667 0.00 0.00 37.15 3.96
2273 6180 6.918022 CGTAATGATAGTCATGCAGTAAGTGA 59.082 38.462 0.00 0.00 37.15 3.41
2276 6183 6.036577 TGATAGTCATGCAGTAAGTGACAA 57.963 37.500 17.26 0.68 43.51 3.18
2603 6512 3.118775 TGCTTATCTGCGTGACACCTAAT 60.119 43.478 0.00 0.00 35.36 1.73
2704 6613 1.792115 AGAGCATGAGAGGCTAGCTT 58.208 50.000 15.72 6.94 42.78 3.74
2804 6713 1.621301 CGAGCCAGTCAGCGACAAAG 61.621 60.000 10.52 1.51 38.01 2.77
2928 6842 6.311935 GTCATGCACATTAATTCATGCTTTGT 59.688 34.615 14.18 0.00 38.90 2.83
2929 6843 6.532302 TCATGCACATTAATTCATGCTTTGTC 59.468 34.615 14.18 0.00 38.90 3.18
3740 7676 3.579709 CATACTCGATATCCTGTGTGCC 58.420 50.000 0.00 0.00 0.00 5.01
3771 7707 0.751643 GGCTGTTGGAGTGTTGGTGT 60.752 55.000 0.00 0.00 0.00 4.16
3911 7848 7.384660 CACTGGATGAGATACTTCTATTCTTGC 59.615 40.741 0.00 0.00 30.30 4.01
3929 7866 2.831742 CAGCCCGCCTGAATGCAT 60.832 61.111 0.00 0.00 44.64 3.96
4357 9652 8.469309 AGCAGTATATACTCCATTTGCAAATT 57.531 30.769 21.95 10.38 33.46 1.82
4434 9729 5.176774 CGCATTCGAACCAAGCAGTATATAA 59.823 40.000 0.00 0.00 38.10 0.98
4522 9817 2.486982 GCTTGCTGTGATGATGAAGTGT 59.513 45.455 0.00 0.00 0.00 3.55
4831 10176 0.317770 GTTGGTTGTGTGGTGCATCG 60.318 55.000 0.00 0.00 0.00 3.84
4832 10177 2.069465 TTGGTTGTGTGGTGCATCGC 62.069 55.000 2.79 2.79 0.00 4.58
4879 10227 1.843992 CACAACTTCAGCTTGGTTGC 58.156 50.000 17.68 0.00 42.55 4.17
4902 10254 4.385447 CGTGGCACATCTAAAAACAAATGG 59.615 41.667 19.09 0.00 44.52 3.16
4981 10370 6.285224 TGAAGTTCAATACTTTTGACGAGGA 58.715 36.000 2.20 0.00 47.00 3.71
4987 10376 7.647907 TCAATACTTTTGACGAGGACTTTAC 57.352 36.000 0.00 0.00 0.00 2.01
5117 10513 9.985730 AAACTAACATGATGGCATATTAATTGG 57.014 29.630 0.00 0.00 32.27 3.16
5168 10564 4.202161 CCACTGCCGATATTTGTAGTCTCT 60.202 45.833 0.00 0.00 0.00 3.10
5205 10601 5.854010 TCTGCCGAGAGAATATTAACTGT 57.146 39.130 0.00 0.00 0.00 3.55
5206 10602 6.222038 TCTGCCGAGAGAATATTAACTGTT 57.778 37.500 0.00 0.00 0.00 3.16
5209 10605 4.511826 GCCGAGAGAATATTAACTGTTGGG 59.488 45.833 2.69 1.28 33.30 4.12
5227 10623 1.341976 GGGAAATACATGTGCCAGGGT 60.342 52.381 9.11 0.00 0.00 4.34
5234 10630 2.514803 ACATGTGCCAGGGTAGAAAAC 58.485 47.619 0.00 0.00 0.00 2.43
5235 10631 2.108250 ACATGTGCCAGGGTAGAAAACT 59.892 45.455 0.00 0.00 0.00 2.66
5397 10794 0.913205 TGGTGTTGTGGTGTAGTGGT 59.087 50.000 0.00 0.00 0.00 4.16
5398 10795 2.117051 TGGTGTTGTGGTGTAGTGGTA 58.883 47.619 0.00 0.00 0.00 3.25
5399 10796 2.504585 TGGTGTTGTGGTGTAGTGGTAA 59.495 45.455 0.00 0.00 0.00 2.85
5400 10797 3.054582 TGGTGTTGTGGTGTAGTGGTAAA 60.055 43.478 0.00 0.00 0.00 2.01
5401 10798 3.562557 GGTGTTGTGGTGTAGTGGTAAAG 59.437 47.826 0.00 0.00 0.00 1.85
5402 10799 3.562557 GTGTTGTGGTGTAGTGGTAAAGG 59.437 47.826 0.00 0.00 0.00 3.11
5403 10800 3.200385 TGTTGTGGTGTAGTGGTAAAGGT 59.800 43.478 0.00 0.00 0.00 3.50
5404 10801 4.408270 TGTTGTGGTGTAGTGGTAAAGGTA 59.592 41.667 0.00 0.00 0.00 3.08
5405 10802 4.877378 TGTGGTGTAGTGGTAAAGGTAG 57.123 45.455 0.00 0.00 0.00 3.18
5406 10803 3.007182 TGTGGTGTAGTGGTAAAGGTAGC 59.993 47.826 0.00 0.00 0.00 3.58
5407 10804 3.007182 GTGGTGTAGTGGTAAAGGTAGCA 59.993 47.826 0.00 0.00 35.37 3.49
5408 10805 3.841845 TGGTGTAGTGGTAAAGGTAGCAT 59.158 43.478 0.00 0.00 39.78 3.79
5409 10806 4.081309 TGGTGTAGTGGTAAAGGTAGCATC 60.081 45.833 0.00 0.00 39.78 3.91
5410 10807 4.081309 GGTGTAGTGGTAAAGGTAGCATCA 60.081 45.833 0.00 0.00 39.78 3.07
5411 10808 5.109903 GTGTAGTGGTAAAGGTAGCATCAG 58.890 45.833 0.00 0.00 39.78 2.90
5412 10809 5.020795 TGTAGTGGTAAAGGTAGCATCAGA 58.979 41.667 0.00 0.00 39.78 3.27
5413 10810 4.744795 AGTGGTAAAGGTAGCATCAGAG 57.255 45.455 0.00 0.00 39.78 3.35
5414 10811 3.452627 AGTGGTAAAGGTAGCATCAGAGG 59.547 47.826 0.00 0.00 39.78 3.69
5415 10812 2.170607 TGGTAAAGGTAGCATCAGAGGC 59.829 50.000 0.00 0.00 32.81 4.70
5416 10813 2.436173 GGTAAAGGTAGCATCAGAGGCT 59.564 50.000 15.14 15.14 45.18 4.58
5417 10814 2.998316 AAAGGTAGCATCAGAGGCTC 57.002 50.000 14.08 6.34 42.62 4.70
5418 10815 1.127343 AAGGTAGCATCAGAGGCTCC 58.873 55.000 14.08 14.21 42.62 4.70
5419 10816 1.112315 AGGTAGCATCAGAGGCTCCG 61.112 60.000 14.08 0.00 42.62 4.63
5420 10817 1.395826 GGTAGCATCAGAGGCTCCGT 61.396 60.000 14.08 0.00 42.62 4.69
5421 10818 0.031449 GTAGCATCAGAGGCTCCGTC 59.969 60.000 14.08 0.00 42.62 4.79
5422 10819 1.109920 TAGCATCAGAGGCTCCGTCC 61.110 60.000 14.08 0.00 42.62 4.79
5423 10820 2.415010 CATCAGAGGCTCCGTCCG 59.585 66.667 11.71 0.00 0.00 4.79
5424 10821 3.532155 ATCAGAGGCTCCGTCCGC 61.532 66.667 11.71 0.00 0.00 5.54
5436 10833 3.880846 GTCCGCGTCGACCGGTAT 61.881 66.667 31.11 0.00 45.71 2.73
5437 10834 3.576356 TCCGCGTCGACCGGTATC 61.576 66.667 31.11 0.00 45.71 2.24
5438 10835 3.580193 CCGCGTCGACCGGTATCT 61.580 66.667 27.22 0.00 40.84 1.98
5439 10836 2.352001 CGCGTCGACCGGTATCTG 60.352 66.667 7.34 0.00 36.94 2.90
5440 10837 2.654404 GCGTCGACCGGTATCTGC 60.654 66.667 7.34 6.31 36.94 4.26
5441 10838 3.108343 CGTCGACCGGTATCTGCT 58.892 61.111 7.34 0.00 0.00 4.24
5442 10839 1.432251 CGTCGACCGGTATCTGCTT 59.568 57.895 7.34 0.00 0.00 3.91
5443 10840 0.591741 CGTCGACCGGTATCTGCTTC 60.592 60.000 7.34 0.00 0.00 3.86
5444 10841 0.591741 GTCGACCGGTATCTGCTTCG 60.592 60.000 7.34 4.00 0.00 3.79
5445 10842 1.028330 TCGACCGGTATCTGCTTCGT 61.028 55.000 7.34 0.00 0.00 3.85
5446 10843 0.591741 CGACCGGTATCTGCTTCGTC 60.592 60.000 7.34 0.00 0.00 4.20
5447 10844 0.739561 GACCGGTATCTGCTTCGTCT 59.260 55.000 7.34 0.00 0.00 4.18
5448 10845 1.134560 GACCGGTATCTGCTTCGTCTT 59.865 52.381 7.34 0.00 0.00 3.01
5449 10846 1.135083 ACCGGTATCTGCTTCGTCTTG 60.135 52.381 4.49 0.00 0.00 3.02
5450 10847 1.560923 CGGTATCTGCTTCGTCTTGG 58.439 55.000 0.00 0.00 0.00 3.61
5451 10848 1.291132 GGTATCTGCTTCGTCTTGGC 58.709 55.000 0.00 0.00 0.00 4.52
5452 10849 1.134670 GGTATCTGCTTCGTCTTGGCT 60.135 52.381 0.00 0.00 0.00 4.75
5453 10850 2.622436 GTATCTGCTTCGTCTTGGCTT 58.378 47.619 0.00 0.00 0.00 4.35
5454 10851 1.446907 ATCTGCTTCGTCTTGGCTTG 58.553 50.000 0.00 0.00 0.00 4.01
5455 10852 0.392706 TCTGCTTCGTCTTGGCTTGA 59.607 50.000 0.00 0.00 0.00 3.02
5456 10853 0.514691 CTGCTTCGTCTTGGCTTGAC 59.485 55.000 1.39 1.39 0.00 3.18
5457 10854 0.884704 TGCTTCGTCTTGGCTTGACC 60.885 55.000 5.23 0.00 39.84 4.02
5458 10855 0.603975 GCTTCGTCTTGGCTTGACCT 60.604 55.000 5.23 0.00 40.22 3.85
5459 10856 1.884235 CTTCGTCTTGGCTTGACCTT 58.116 50.000 5.23 0.00 40.22 3.50
5460 10857 1.532868 CTTCGTCTTGGCTTGACCTTG 59.467 52.381 5.23 0.00 40.22 3.61
5461 10858 0.756294 TCGTCTTGGCTTGACCTTGA 59.244 50.000 5.23 0.00 40.22 3.02
5462 10859 1.151668 CGTCTTGGCTTGACCTTGAG 58.848 55.000 5.23 0.00 40.22 3.02
5463 10860 1.541233 CGTCTTGGCTTGACCTTGAGT 60.541 52.381 5.23 0.00 40.22 3.41
5464 10861 1.876156 GTCTTGGCTTGACCTTGAGTG 59.124 52.381 0.19 0.00 40.22 3.51
5465 10862 1.202806 TCTTGGCTTGACCTTGAGTGG 60.203 52.381 0.00 0.00 40.22 4.00
5466 10863 0.843309 TTGGCTTGACCTTGAGTGGA 59.157 50.000 0.00 0.00 40.22 4.02
5467 10864 1.067295 TGGCTTGACCTTGAGTGGAT 58.933 50.000 0.00 0.00 40.22 3.41
5468 10865 2.265367 TGGCTTGACCTTGAGTGGATA 58.735 47.619 0.00 0.00 40.22 2.59
5469 10866 2.642311 TGGCTTGACCTTGAGTGGATAA 59.358 45.455 0.00 0.00 40.22 1.75
5470 10867 3.010420 GGCTTGACCTTGAGTGGATAAC 58.990 50.000 0.00 0.00 34.51 1.89
5471 10868 3.307762 GGCTTGACCTTGAGTGGATAACT 60.308 47.826 0.00 0.00 37.36 2.24
5472 10869 3.686726 GCTTGACCTTGAGTGGATAACTG 59.313 47.826 0.00 0.00 40.07 3.16
5473 10870 3.334583 TGACCTTGAGTGGATAACTGC 57.665 47.619 0.00 0.00 40.07 4.40
5474 10871 2.906389 TGACCTTGAGTGGATAACTGCT 59.094 45.455 0.00 0.00 40.07 4.24
5475 10872 3.265791 GACCTTGAGTGGATAACTGCTG 58.734 50.000 0.00 0.00 40.07 4.41
5476 10873 2.012673 CCTTGAGTGGATAACTGCTGC 58.987 52.381 0.00 0.00 40.07 5.25
5477 10874 2.355513 CCTTGAGTGGATAACTGCTGCT 60.356 50.000 0.00 0.00 40.07 4.24
5478 10875 3.341823 CTTGAGTGGATAACTGCTGCTT 58.658 45.455 0.00 0.00 40.07 3.91
5479 10876 2.977914 TGAGTGGATAACTGCTGCTTC 58.022 47.619 0.00 0.00 40.07 3.86
5480 10877 2.568956 TGAGTGGATAACTGCTGCTTCT 59.431 45.455 0.00 0.00 40.07 2.85
5481 10878 3.008375 TGAGTGGATAACTGCTGCTTCTT 59.992 43.478 0.00 0.00 40.07 2.52
5482 10879 3.341823 AGTGGATAACTGCTGCTTCTTG 58.658 45.455 0.00 0.00 37.88 3.02
5483 10880 2.421424 GTGGATAACTGCTGCTTCTTGG 59.579 50.000 0.00 0.00 0.00 3.61
5484 10881 2.040278 TGGATAACTGCTGCTTCTTGGT 59.960 45.455 0.00 0.00 0.00 3.67
5485 10882 2.680339 GGATAACTGCTGCTTCTTGGTC 59.320 50.000 0.00 0.00 0.00 4.02
5486 10883 1.795768 TAACTGCTGCTTCTTGGTCG 58.204 50.000 0.00 0.00 0.00 4.79
5487 10884 0.886490 AACTGCTGCTTCTTGGTCGG 60.886 55.000 0.00 0.00 0.00 4.79
5488 10885 2.669569 TGCTGCTTCTTGGTCGGC 60.670 61.111 0.00 0.00 0.00 5.54
5489 10886 3.793144 GCTGCTTCTTGGTCGGCG 61.793 66.667 0.00 0.00 0.00 6.46
5490 10887 3.793144 CTGCTTCTTGGTCGGCGC 61.793 66.667 0.00 0.00 0.00 6.53
5491 10888 4.617520 TGCTTCTTGGTCGGCGCA 62.618 61.111 10.83 0.00 0.00 6.09
5492 10889 3.793144 GCTTCTTGGTCGGCGCAG 61.793 66.667 10.83 5.07 0.00 5.18
5505 10902 4.351054 CGCAGCCCCCTTGGTTCT 62.351 66.667 0.00 0.00 36.04 3.01
5506 10903 2.677875 GCAGCCCCCTTGGTTCTG 60.678 66.667 0.00 0.00 36.04 3.02
5507 10904 2.036256 CAGCCCCCTTGGTTCTGG 59.964 66.667 0.00 0.00 36.04 3.86
5508 10905 2.121506 AGCCCCCTTGGTTCTGGA 60.122 61.111 0.00 0.00 36.04 3.86
5509 10906 2.035783 GCCCCCTTGGTTCTGGAC 59.964 66.667 0.00 0.00 36.04 4.02
5510 10907 2.840753 GCCCCCTTGGTTCTGGACA 61.841 63.158 0.00 0.00 36.04 4.02
5511 10908 1.074951 CCCCCTTGGTTCTGGACAC 59.925 63.158 0.00 0.00 0.00 3.67
5512 10909 1.302511 CCCCTTGGTTCTGGACACG 60.303 63.158 0.00 0.00 0.00 4.49
5513 10910 1.302511 CCCTTGGTTCTGGACACGG 60.303 63.158 0.00 0.00 0.00 4.94
5514 10911 1.966451 CCTTGGTTCTGGACACGGC 60.966 63.158 0.00 0.00 0.00 5.68
5515 10912 1.966451 CTTGGTTCTGGACACGGCC 60.966 63.158 0.00 0.00 0.00 6.13
5516 10913 2.397413 CTTGGTTCTGGACACGGCCT 62.397 60.000 0.00 0.00 0.00 5.19
5517 10914 1.990160 TTGGTTCTGGACACGGCCTT 61.990 55.000 0.00 0.00 0.00 4.35
5518 10915 1.966451 GGTTCTGGACACGGCCTTG 60.966 63.158 7.87 7.87 0.00 3.61
5519 10916 1.227853 GTTCTGGACACGGCCTTGT 60.228 57.895 15.86 15.86 0.00 3.16
5520 10917 1.070786 TTCTGGACACGGCCTTGTC 59.929 57.895 29.42 29.42 44.53 3.18
5521 10918 1.691195 TTCTGGACACGGCCTTGTCA 61.691 55.000 35.19 23.02 46.68 3.58
5522 10919 1.669115 CTGGACACGGCCTTGTCAG 60.669 63.158 35.19 26.76 46.68 3.51
5523 10920 3.050275 GGACACGGCCTTGTCAGC 61.050 66.667 35.19 20.26 46.68 4.26
5524 10921 3.414700 GACACGGCCTTGTCAGCG 61.415 66.667 31.51 5.35 44.62 5.18
5525 10922 4.988598 ACACGGCCTTGTCAGCGG 62.989 66.667 9.49 0.00 36.69 5.52
5531 10928 3.058160 CCTTGTCAGCGGGGCAAG 61.058 66.667 15.97 15.97 39.26 4.01
5532 10929 3.741476 CTTGTCAGCGGGGCAAGC 61.741 66.667 11.82 0.00 34.16 4.01
5552 10949 2.043652 CCACCATGGCCCTGAAGG 60.044 66.667 13.04 6.93 39.47 3.46
5562 10959 3.776616 CCCTGAAGGCTAGCTTGAG 57.223 57.895 15.72 10.07 0.00 3.02
5563 10960 0.179936 CCCTGAAGGCTAGCTTGAGG 59.820 60.000 15.72 17.60 35.43 3.86
5564 10961 0.179936 CCTGAAGGCTAGCTTGAGGG 59.820 60.000 15.72 8.28 32.68 4.30
5565 10962 0.463474 CTGAAGGCTAGCTTGAGGGC 60.463 60.000 15.72 0.00 0.00 5.19
5566 10963 1.153066 GAAGGCTAGCTTGAGGGCC 60.153 63.158 15.72 0.00 44.38 5.80
5570 10967 3.785859 CTAGCTTGAGGGCCGCCA 61.786 66.667 12.58 0.49 0.00 5.69
5571 10968 4.096003 TAGCTTGAGGGCCGCCAC 62.096 66.667 12.58 5.30 0.00 5.01
5584 10981 3.365265 GCCACGGCTTCCTTGGTG 61.365 66.667 9.67 0.00 43.79 4.17
5585 10982 2.113139 CCACGGCTTCCTTGGTGT 59.887 61.111 0.62 0.00 38.03 4.16
5586 10983 1.966451 CCACGGCTTCCTTGGTGTC 60.966 63.158 0.62 0.00 38.03 3.67
5587 10984 1.071471 CACGGCTTCCTTGGTGTCT 59.929 57.895 0.00 0.00 0.00 3.41
5588 10985 0.951040 CACGGCTTCCTTGGTGTCTC 60.951 60.000 0.00 0.00 0.00 3.36
5589 10986 1.376037 CGGCTTCCTTGGTGTCTCC 60.376 63.158 0.00 0.00 0.00 3.71
5590 10987 1.376037 GGCTTCCTTGGTGTCTCCG 60.376 63.158 0.00 0.00 39.52 4.63
5591 10988 1.376037 GCTTCCTTGGTGTCTCCGG 60.376 63.158 0.00 0.00 39.52 5.14
5592 10989 1.296715 CTTCCTTGGTGTCTCCGGG 59.703 63.158 0.00 0.00 39.52 5.73
5593 10990 2.804828 CTTCCTTGGTGTCTCCGGGC 62.805 65.000 0.00 0.00 39.52 6.13
5594 10991 3.636231 CCTTGGTGTCTCCGGGCA 61.636 66.667 0.00 0.00 39.52 5.36
5595 10992 2.358737 CTTGGTGTCTCCGGGCAC 60.359 66.667 0.00 8.89 39.52 5.01
5596 10993 4.308458 TTGGTGTCTCCGGGCACG 62.308 66.667 0.00 0.00 39.52 5.34
5610 11007 4.003788 CACGGTGAGGACGCCCTT 62.004 66.667 0.74 0.00 44.53 3.95
5611 11008 4.003788 ACGGTGAGGACGCCCTTG 62.004 66.667 0.00 0.00 44.53 3.61
5613 11010 4.021925 GGTGAGGACGCCCTTGCT 62.022 66.667 0.00 0.00 44.53 3.91
5614 11011 2.032681 GTGAGGACGCCCTTGCTT 59.967 61.111 0.00 0.00 44.53 3.91
5615 11012 2.035442 GTGAGGACGCCCTTGCTTC 61.035 63.158 0.00 0.00 44.53 3.86
5619 11016 2.747855 GACGCCCTTGCTTCCTGG 60.748 66.667 0.00 0.00 34.43 4.45
5621 11018 4.729918 CGCCCTTGCTTCCTGGCT 62.730 66.667 0.00 0.00 41.80 4.75
5622 11019 2.283460 GCCCTTGCTTCCTGGCTT 60.283 61.111 0.00 0.00 40.77 4.35
5623 11020 2.346541 GCCCTTGCTTCCTGGCTTC 61.347 63.158 0.00 0.00 40.77 3.86
5624 11021 1.381851 CCCTTGCTTCCTGGCTTCT 59.618 57.895 0.00 0.00 0.00 2.85
5625 11022 0.251519 CCCTTGCTTCCTGGCTTCTT 60.252 55.000 0.00 0.00 0.00 2.52
5626 11023 1.172175 CCTTGCTTCCTGGCTTCTTC 58.828 55.000 0.00 0.00 0.00 2.87
5627 11024 1.546323 CCTTGCTTCCTGGCTTCTTCA 60.546 52.381 0.00 0.00 0.00 3.02
5628 11025 2.444421 CTTGCTTCCTGGCTTCTTCAT 58.556 47.619 0.00 0.00 0.00 2.57
5629 11026 1.830279 TGCTTCCTGGCTTCTTCATG 58.170 50.000 0.00 0.00 0.00 3.07
5630 11027 1.352017 TGCTTCCTGGCTTCTTCATGA 59.648 47.619 0.00 0.00 0.00 3.07
5631 11028 2.015587 GCTTCCTGGCTTCTTCATGAG 58.984 52.381 0.00 0.00 0.00 2.90
5632 11029 2.641305 CTTCCTGGCTTCTTCATGAGG 58.359 52.381 0.00 0.00 0.00 3.86
5633 11030 1.661463 TCCTGGCTTCTTCATGAGGT 58.339 50.000 4.57 0.00 0.00 3.85
5634 11031 1.988107 TCCTGGCTTCTTCATGAGGTT 59.012 47.619 4.57 0.00 0.00 3.50
5635 11032 2.089980 CCTGGCTTCTTCATGAGGTTG 58.910 52.381 4.57 0.68 0.00 3.77
5636 11033 2.553904 CCTGGCTTCTTCATGAGGTTGT 60.554 50.000 4.57 0.00 0.00 3.32
5637 11034 3.307691 CCTGGCTTCTTCATGAGGTTGTA 60.308 47.826 4.57 0.00 0.00 2.41
5638 11035 3.937706 CTGGCTTCTTCATGAGGTTGTAG 59.062 47.826 4.57 0.00 0.00 2.74
5639 11036 3.274288 GGCTTCTTCATGAGGTTGTAGG 58.726 50.000 4.57 0.00 0.00 3.18
5640 11037 2.680339 GCTTCTTCATGAGGTTGTAGGC 59.320 50.000 4.57 0.00 0.00 3.93
5641 11038 3.869912 GCTTCTTCATGAGGTTGTAGGCA 60.870 47.826 4.57 0.00 0.00 4.75
5642 11039 3.616956 TCTTCATGAGGTTGTAGGCAG 57.383 47.619 4.57 0.00 0.00 4.85
5643 11040 2.237143 TCTTCATGAGGTTGTAGGCAGG 59.763 50.000 4.57 0.00 0.00 4.85
5644 11041 1.951209 TCATGAGGTTGTAGGCAGGA 58.049 50.000 0.00 0.00 0.00 3.86
5645 11042 2.481441 TCATGAGGTTGTAGGCAGGAT 58.519 47.619 0.00 0.00 0.00 3.24
5646 11043 2.171237 TCATGAGGTTGTAGGCAGGATG 59.829 50.000 0.00 0.00 40.87 3.51
5647 11044 0.911769 TGAGGTTGTAGGCAGGATGG 59.088 55.000 0.00 0.00 35.86 3.51
5648 11045 0.181350 GAGGTTGTAGGCAGGATGGG 59.819 60.000 0.00 0.00 35.86 4.00
5649 11046 0.550147 AGGTTGTAGGCAGGATGGGT 60.550 55.000 0.00 0.00 35.86 4.51
5650 11047 0.331616 GGTTGTAGGCAGGATGGGTT 59.668 55.000 0.00 0.00 35.86 4.11
5651 11048 1.463674 GTTGTAGGCAGGATGGGTTG 58.536 55.000 0.00 0.00 35.86 3.77
5652 11049 0.323360 TTGTAGGCAGGATGGGTTGC 60.323 55.000 0.00 0.00 39.56 4.17
5653 11050 1.207488 TGTAGGCAGGATGGGTTGCT 61.207 55.000 0.00 0.00 40.15 3.91
5654 11051 0.749454 GTAGGCAGGATGGGTTGCTG 60.749 60.000 0.00 0.00 45.96 4.41
5657 11054 2.036098 CAGGATGGGTTGCTGCCA 59.964 61.111 0.00 0.00 36.95 4.92
5658 11055 1.380785 CAGGATGGGTTGCTGCCAT 60.381 57.895 0.00 0.00 36.95 4.40
5659 11056 1.380785 AGGATGGGTTGCTGCCATG 60.381 57.895 0.00 0.00 0.00 3.66
5660 11057 1.380246 GGATGGGTTGCTGCCATGA 60.380 57.895 0.00 0.00 0.00 3.07
5661 11058 0.971959 GGATGGGTTGCTGCCATGAA 60.972 55.000 0.00 0.00 0.00 2.57
5662 11059 0.174162 GATGGGTTGCTGCCATGAAC 59.826 55.000 0.00 0.00 0.00 3.18
5663 11060 0.251922 ATGGGTTGCTGCCATGAACT 60.252 50.000 0.00 0.00 0.00 3.01
5664 11061 1.180456 TGGGTTGCTGCCATGAACTG 61.180 55.000 0.00 0.00 0.00 3.16
5666 11063 1.588082 GTTGCTGCCATGAACTGGG 59.412 57.895 0.00 0.00 46.06 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.636206 GGTATTTCTCTCGGCAGTTGATTT 59.364 41.667 0.00 0.00 0.00 2.17
19 20 2.354805 GCCGTTCACCTGGTATTTCTCT 60.355 50.000 0.00 0.00 0.00 3.10
52 53 2.037251 GCCGGCAGTAATGAGATTCCTA 59.963 50.000 24.80 0.00 0.00 2.94
81 82 0.475044 ACAGTTCACCCGCCCTTAAA 59.525 50.000 0.00 0.00 0.00 1.52
100 101 1.933500 GCGTTGCTCAACTTCTACCGA 60.934 52.381 10.56 0.00 39.08 4.69
174 175 1.718280 AAGTCGGGTTCAGTTCTCCT 58.282 50.000 0.00 0.00 0.00 3.69
194 196 2.300723 ACACACAGTACCGGCAGATAAA 59.699 45.455 0.00 0.00 0.00 1.40
217 219 3.738982 TCTTTTGGCTGAAATGTCTCGA 58.261 40.909 0.00 0.00 0.00 4.04
254 440 1.816863 GAAGTGAGGGTGAGGTGCGA 61.817 60.000 0.00 0.00 0.00 5.10
271 457 3.055385 CGTGACTTGGGGGAATAGAAGAA 60.055 47.826 0.00 0.00 0.00 2.52
358 553 1.884075 TATCGACTGCCGCTGTGGTT 61.884 55.000 7.74 4.64 41.21 3.67
362 557 1.153628 GGTTATCGACTGCCGCTGT 60.154 57.895 2.05 2.05 38.37 4.40
437 654 1.203313 AGGTAGTCAGGAAGGAAGCCA 60.203 52.381 0.00 0.00 0.00 4.75
449 666 1.305465 TAGCCCGCCAAGGTAGTCA 60.305 57.895 0.00 0.00 38.74 3.41
453 670 2.766651 CCCTAGCCCGCCAAGGTA 60.767 66.667 5.29 0.00 38.74 3.08
484 701 2.359404 GAGGACGACCAGGAGGGA 59.641 66.667 6.71 0.00 41.15 4.20
511 728 3.022406 GGTAGAAGCCGTTTCCTCTAGA 58.978 50.000 0.00 0.00 36.40 2.43
529 746 0.616679 CAGGGTTCGGAAGGAGGGTA 60.617 60.000 0.00 0.00 0.00 3.69
576 793 1.336632 CCAAGCAGGAGAGGGAGGAG 61.337 65.000 0.00 0.00 41.22 3.69
654 873 1.072331 GCTTGTGGAGAAGAGGTGGAA 59.928 52.381 0.00 0.00 0.00 3.53
718 937 2.188469 GATAAAGGCGGCCGTGGA 59.812 61.111 28.70 8.46 0.00 4.02
843 1063 6.838612 GCCCCCATATATAAATGAGCCATAAA 59.161 38.462 0.00 0.00 0.00 1.40
1101 1328 8.886816 GATTTGCATAAATCGGATCTTATCAC 57.113 34.615 0.00 0.00 41.81 3.06
1146 1373 0.999406 CCAACAAGACGATACCTGCG 59.001 55.000 0.00 0.00 0.00 5.18
1161 5061 6.549912 ACAGAACCGTTATTCTAAACCAAC 57.450 37.500 0.00 0.00 36.78 3.77
1175 5075 0.841289 TTTCCCAGGAACAGAACCGT 59.159 50.000 0.00 0.00 33.41 4.83
1385 5290 3.117663 TGGAACAGGGTAAGAAACTGCTT 60.118 43.478 0.00 0.00 35.70 3.91
1423 5328 1.210204 ATCTTGGGGAGGCAGCAGAA 61.210 55.000 0.00 0.00 0.00 3.02
1492 5397 3.243873 CCTTGCAGAACTGTACAGTCTGA 60.244 47.826 34.84 24.77 41.58 3.27
1553 5458 3.940319 AGCAGCCAGATATCATAGCAAG 58.060 45.455 5.32 3.27 0.00 4.01
1601 5506 6.770785 TGGCATGTAGAATAGGGACATAAAAC 59.229 38.462 0.00 0.00 32.58 2.43
1615 5520 3.354948 AGCTTGACATGGCATGTAGAA 57.645 42.857 31.48 23.91 45.03 2.10
1636 5541 4.019860 TGCAGCTAAGAAAGAAGAGGATGT 60.020 41.667 0.00 0.00 0.00 3.06
1739 5644 8.488308 ACTACACCCGTTCCTAAATATAAGAT 57.512 34.615 0.00 0.00 0.00 2.40
1996 5903 7.364522 TCACTAATGTCACTTTATTGAGCAC 57.635 36.000 0.78 0.00 0.00 4.40
1997 5904 7.977789 TTCACTAATGTCACTTTATTGAGCA 57.022 32.000 4.38 0.00 0.00 4.26
2040 5947 8.043710 TCTAGGTACAAGTCTACCAGTAAGTAC 58.956 40.741 0.00 0.00 39.05 2.73
2057 5964 5.133999 AGACCCTATACTTGCTCTAGGTACA 59.866 44.000 0.00 0.00 31.82 2.90
2091 5998 7.154656 GGACTGGTTTTAATTTCTTCTTGCAT 58.845 34.615 0.00 0.00 0.00 3.96
2151 6058 7.423844 TCAAGGTCATCTTTAGCTAGAATGA 57.576 36.000 9.47 9.47 32.41 2.57
2273 6180 6.536582 GCAACATCACTCTGACATAGTATTGT 59.463 38.462 0.00 0.00 0.00 2.71
2276 6183 6.323482 AGAGCAACATCACTCTGACATAGTAT 59.677 38.462 0.00 0.00 41.67 2.12
2603 6512 3.081061 GTGGCACATTAGGATTGACACA 58.919 45.455 13.86 0.00 44.52 3.72
2704 6613 9.905713 ATCATCACTATTCCTTGCTTTAAGTAA 57.094 29.630 0.00 0.00 34.45 2.24
2779 6688 2.347322 GCTGACTGGCTCGTCCTCT 61.347 63.158 5.33 0.00 35.26 3.69
2804 6713 8.293157 CCAAAGAGATCACCTTCTTTCTTTTAC 58.707 37.037 5.04 0.00 30.96 2.01
2866 6780 6.183360 CGCAAAGCATGTAACAAGATGTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
2870 6784 3.825308 CGCAAAGCATGTAACAAGATGT 58.175 40.909 0.00 0.00 0.00 3.06
2928 6842 2.832563 TGCATGACAAAGTGAACTCGA 58.167 42.857 0.00 0.00 0.00 4.04
2929 6843 3.818961 ATGCATGACAAAGTGAACTCG 57.181 42.857 0.00 0.00 0.00 4.18
3666 7597 3.731216 CACGGCTCAAGACAAGTATATCG 59.269 47.826 0.00 0.00 0.00 2.92
3699 7630 2.620585 TGGACATAGCGAGATGACAGAG 59.379 50.000 4.19 0.00 0.00 3.35
3702 7633 4.145052 AGTATGGACATAGCGAGATGACA 58.855 43.478 4.19 3.65 0.00 3.58
3771 7707 6.483307 CCAATATCTTATTCTCTGCCGAACAA 59.517 38.462 0.00 0.00 0.00 2.83
3929 7866 2.676232 AGCAACAGCTAGGCTCTCA 58.324 52.632 0.00 0.00 36.40 3.27
4089 8028 3.306019 CGGGCCAGCTTAAAGAAAAACAT 60.306 43.478 4.39 0.00 0.00 2.71
4242 8744 9.865321 TGCCAAGTTACAACTTACTAGTATAAG 57.135 33.333 2.79 3.60 46.89 1.73
4434 9729 6.230472 GCATACAAAAACTTCCCAAAAGGAT 58.770 36.000 0.00 0.00 46.94 3.24
4714 10038 7.097192 TCCATTGTCACTACACTGACTTAATC 58.903 38.462 1.33 0.00 41.15 1.75
4831 10176 7.637709 AAAAGGAGAAACACATTTATTTCGC 57.362 32.000 0.00 0.00 39.36 4.70
4879 10227 4.385447 CCATTTGTTTTTAGATGTGCCACG 59.615 41.667 0.00 0.00 0.00 4.94
4902 10254 2.159254 TGTGCCACAAAAGAAGTGCTTC 60.159 45.455 0.00 3.89 35.24 3.86
4981 10370 8.603242 ACATCTCAATTGAAGTTACGTAAAGT 57.397 30.769 10.11 0.17 0.00 2.66
5117 10513 1.372128 CAGAAGCTTGTTTGCCCGC 60.372 57.895 2.10 0.00 0.00 6.13
5168 10564 0.955428 GCAGATTGGTCAAGGCACGA 60.955 55.000 0.00 0.00 0.00 4.35
5205 10601 2.455557 CCTGGCACATGTATTTCCCAA 58.544 47.619 0.00 0.00 38.20 4.12
5206 10602 1.341877 CCCTGGCACATGTATTTCCCA 60.342 52.381 0.00 0.00 38.20 4.37
5209 10605 4.150897 TCTACCCTGGCACATGTATTTC 57.849 45.455 0.00 0.00 38.20 2.17
5227 10623 4.563140 ACTATTCCCGGCAAGTTTTCTA 57.437 40.909 0.00 0.00 0.00 2.10
5234 10630 3.251004 GCAGATAAACTATTCCCGGCAAG 59.749 47.826 0.00 0.00 0.00 4.01
5235 10631 3.211045 GCAGATAAACTATTCCCGGCAA 58.789 45.455 0.00 0.00 0.00 4.52
5339 10736 3.641906 TCTATCGGGAGAAAGCCCTTTAG 59.358 47.826 0.00 0.00 46.44 1.85
5397 10794 2.700897 GGAGCCTCTGATGCTACCTTTA 59.299 50.000 7.44 0.00 39.69 1.85
5398 10795 1.488393 GGAGCCTCTGATGCTACCTTT 59.512 52.381 7.44 0.00 39.69 3.11
5399 10796 1.127343 GGAGCCTCTGATGCTACCTT 58.873 55.000 7.44 0.00 39.69 3.50
5400 10797 1.112315 CGGAGCCTCTGATGCTACCT 61.112 60.000 10.98 0.00 39.69 3.08
5401 10798 1.365633 CGGAGCCTCTGATGCTACC 59.634 63.158 10.98 10.92 39.69 3.18
5402 10799 0.031449 GACGGAGCCTCTGATGCTAC 59.969 60.000 7.73 7.24 39.69 3.58
5403 10800 1.109920 GGACGGAGCCTCTGATGCTA 61.110 60.000 7.73 0.00 39.69 3.49
5404 10801 2.430610 GGACGGAGCCTCTGATGCT 61.431 63.158 7.73 7.17 43.03 3.79
5405 10802 2.107953 GGACGGAGCCTCTGATGC 59.892 66.667 7.73 0.00 0.00 3.91
5406 10803 2.415010 CGGACGGAGCCTCTGATG 59.585 66.667 7.73 0.00 0.00 3.07
5407 10804 3.532155 GCGGACGGAGCCTCTGAT 61.532 66.667 7.73 0.00 0.00 2.90
5419 10816 3.796958 GATACCGGTCGACGCGGAC 62.797 68.421 36.08 25.69 42.52 4.79
5420 10817 3.576356 GATACCGGTCGACGCGGA 61.576 66.667 36.08 24.90 42.52 5.54
5421 10818 3.580193 AGATACCGGTCGACGCGG 61.580 66.667 31.11 31.11 42.52 6.46
5422 10819 2.352001 CAGATACCGGTCGACGCG 60.352 66.667 12.40 13.83 42.52 6.01
5423 10820 2.609183 AAGCAGATACCGGTCGACGC 62.609 60.000 12.40 10.94 42.52 5.19
5424 10821 0.591741 GAAGCAGATACCGGTCGACG 60.592 60.000 12.40 0.00 43.80 5.12
5425 10822 0.591741 CGAAGCAGATACCGGTCGAC 60.592 60.000 12.40 7.13 0.00 4.20
5426 10823 1.028330 ACGAAGCAGATACCGGTCGA 61.028 55.000 12.40 0.00 0.00 4.20
5427 10824 0.591741 GACGAAGCAGATACCGGTCG 60.592 60.000 12.40 8.70 0.00 4.79
5428 10825 0.739561 AGACGAAGCAGATACCGGTC 59.260 55.000 12.40 0.00 0.00 4.79
5429 10826 1.135083 CAAGACGAAGCAGATACCGGT 60.135 52.381 13.98 13.98 0.00 5.28
5430 10827 1.560923 CAAGACGAAGCAGATACCGG 58.439 55.000 0.00 0.00 0.00 5.28
5431 10828 1.560923 CCAAGACGAAGCAGATACCG 58.439 55.000 0.00 0.00 0.00 4.02
5432 10829 1.134670 AGCCAAGACGAAGCAGATACC 60.135 52.381 0.00 0.00 0.00 2.73
5433 10830 2.301577 AGCCAAGACGAAGCAGATAC 57.698 50.000 0.00 0.00 0.00 2.24
5434 10831 2.233676 TCAAGCCAAGACGAAGCAGATA 59.766 45.455 0.00 0.00 0.00 1.98
5435 10832 1.002430 TCAAGCCAAGACGAAGCAGAT 59.998 47.619 0.00 0.00 0.00 2.90
5436 10833 0.392706 TCAAGCCAAGACGAAGCAGA 59.607 50.000 0.00 0.00 0.00 4.26
5437 10834 0.514691 GTCAAGCCAAGACGAAGCAG 59.485 55.000 0.00 0.00 0.00 4.24
5438 10835 0.884704 GGTCAAGCCAAGACGAAGCA 60.885 55.000 0.00 0.00 36.87 3.91
5439 10836 0.603975 AGGTCAAGCCAAGACGAAGC 60.604 55.000 0.00 0.00 40.61 3.86
5440 10837 1.532868 CAAGGTCAAGCCAAGACGAAG 59.467 52.381 0.00 0.00 40.61 3.79
5441 10838 1.140052 TCAAGGTCAAGCCAAGACGAA 59.860 47.619 0.00 0.00 40.61 3.85
5442 10839 0.756294 TCAAGGTCAAGCCAAGACGA 59.244 50.000 0.00 0.00 40.61 4.20
5443 10840 1.151668 CTCAAGGTCAAGCCAAGACG 58.848 55.000 0.00 0.00 40.61 4.18
5444 10841 1.876156 CACTCAAGGTCAAGCCAAGAC 59.124 52.381 0.00 0.00 40.61 3.01
5445 10842 1.202806 CCACTCAAGGTCAAGCCAAGA 60.203 52.381 0.00 0.00 40.61 3.02
5446 10843 1.202806 TCCACTCAAGGTCAAGCCAAG 60.203 52.381 0.00 0.00 40.61 3.61
5447 10844 0.843309 TCCACTCAAGGTCAAGCCAA 59.157 50.000 0.00 0.00 40.61 4.52
5448 10845 1.067295 ATCCACTCAAGGTCAAGCCA 58.933 50.000 0.00 0.00 40.61 4.75
5449 10846 3.010420 GTTATCCACTCAAGGTCAAGCC 58.990 50.000 0.00 0.00 37.58 4.35
5450 10847 3.686726 CAGTTATCCACTCAAGGTCAAGC 59.313 47.826 0.00 0.00 30.92 4.01
5451 10848 3.686726 GCAGTTATCCACTCAAGGTCAAG 59.313 47.826 0.00 0.00 30.92 3.02
5452 10849 3.327757 AGCAGTTATCCACTCAAGGTCAA 59.672 43.478 0.00 0.00 30.92 3.18
5453 10850 2.906389 AGCAGTTATCCACTCAAGGTCA 59.094 45.455 0.00 0.00 30.92 4.02
5454 10851 3.265791 CAGCAGTTATCCACTCAAGGTC 58.734 50.000 0.00 0.00 30.92 3.85
5455 10852 2.616510 GCAGCAGTTATCCACTCAAGGT 60.617 50.000 0.00 0.00 30.92 3.50
5456 10853 2.012673 GCAGCAGTTATCCACTCAAGG 58.987 52.381 0.00 0.00 30.92 3.61
5457 10854 2.983229 AGCAGCAGTTATCCACTCAAG 58.017 47.619 0.00 0.00 30.92 3.02
5458 10855 3.008375 AGAAGCAGCAGTTATCCACTCAA 59.992 43.478 0.00 0.00 30.92 3.02
5459 10856 2.568956 AGAAGCAGCAGTTATCCACTCA 59.431 45.455 0.00 0.00 30.92 3.41
5460 10857 3.258971 AGAAGCAGCAGTTATCCACTC 57.741 47.619 0.00 0.00 30.92 3.51
5461 10858 3.341823 CAAGAAGCAGCAGTTATCCACT 58.658 45.455 0.00 0.00 35.35 4.00
5462 10859 2.421424 CCAAGAAGCAGCAGTTATCCAC 59.579 50.000 0.00 0.00 0.00 4.02
5463 10860 2.040278 ACCAAGAAGCAGCAGTTATCCA 59.960 45.455 0.00 0.00 0.00 3.41
5464 10861 2.680339 GACCAAGAAGCAGCAGTTATCC 59.320 50.000 0.00 0.00 0.00 2.59
5465 10862 2.349886 CGACCAAGAAGCAGCAGTTATC 59.650 50.000 0.00 0.00 0.00 1.75
5466 10863 2.350522 CGACCAAGAAGCAGCAGTTAT 58.649 47.619 0.00 0.00 0.00 1.89
5467 10864 1.608025 CCGACCAAGAAGCAGCAGTTA 60.608 52.381 0.00 0.00 0.00 2.24
5468 10865 0.886490 CCGACCAAGAAGCAGCAGTT 60.886 55.000 0.00 0.00 0.00 3.16
5469 10866 1.302033 CCGACCAAGAAGCAGCAGT 60.302 57.895 0.00 0.00 0.00 4.40
5470 10867 2.684843 GCCGACCAAGAAGCAGCAG 61.685 63.158 0.00 0.00 0.00 4.24
5471 10868 2.669569 GCCGACCAAGAAGCAGCA 60.670 61.111 0.00 0.00 0.00 4.41
5472 10869 3.793144 CGCCGACCAAGAAGCAGC 61.793 66.667 0.00 0.00 0.00 5.25
5473 10870 3.793144 GCGCCGACCAAGAAGCAG 61.793 66.667 0.00 0.00 0.00 4.24
5474 10871 4.617520 TGCGCCGACCAAGAAGCA 62.618 61.111 4.18 0.00 0.00 3.91
5475 10872 3.793144 CTGCGCCGACCAAGAAGC 61.793 66.667 4.18 0.00 0.00 3.86
5476 10873 3.793144 GCTGCGCCGACCAAGAAG 61.793 66.667 4.18 0.00 0.00 2.85
5488 10885 4.351054 AGAACCAAGGGGGCTGCG 62.351 66.667 0.00 0.00 42.05 5.18
5489 10886 2.677875 CAGAACCAAGGGGGCTGC 60.678 66.667 0.00 0.00 42.05 5.25
5490 10887 2.036256 CCAGAACCAAGGGGGCTG 59.964 66.667 0.00 0.00 42.05 4.85
5491 10888 2.121506 TCCAGAACCAAGGGGGCT 60.122 61.111 0.00 0.00 42.05 5.19
5492 10889 2.035783 GTCCAGAACCAAGGGGGC 59.964 66.667 0.00 0.00 42.05 5.80
5493 10890 1.074951 GTGTCCAGAACCAAGGGGG 59.925 63.158 0.00 0.00 44.81 5.40
5494 10891 1.302511 CGTGTCCAGAACCAAGGGG 60.303 63.158 0.00 0.00 41.29 4.79
5495 10892 1.302511 CCGTGTCCAGAACCAAGGG 60.303 63.158 0.00 0.00 0.00 3.95
5496 10893 1.966451 GCCGTGTCCAGAACCAAGG 60.966 63.158 0.00 0.00 33.92 3.61
5497 10894 1.966451 GGCCGTGTCCAGAACCAAG 60.966 63.158 0.00 0.00 0.00 3.61
5498 10895 1.990160 AAGGCCGTGTCCAGAACCAA 61.990 55.000 0.00 0.00 0.00 3.67
5499 10896 2.448582 AAGGCCGTGTCCAGAACCA 61.449 57.895 0.00 0.00 0.00 3.67
5500 10897 1.966451 CAAGGCCGTGTCCAGAACC 60.966 63.158 10.93 0.00 0.00 3.62
5501 10898 1.227853 ACAAGGCCGTGTCCAGAAC 60.228 57.895 19.40 0.00 0.00 3.01
5502 10899 1.070786 GACAAGGCCGTGTCCAGAA 59.929 57.895 33.88 0.00 41.79 3.02
5503 10900 2.099652 CTGACAAGGCCGTGTCCAGA 62.100 60.000 38.00 24.23 46.13 3.86
5504 10901 1.669115 CTGACAAGGCCGTGTCCAG 60.669 63.158 38.00 30.67 46.13 3.86
5505 10902 2.425592 CTGACAAGGCCGTGTCCA 59.574 61.111 38.00 27.25 46.13 4.02
5506 10903 3.050275 GCTGACAAGGCCGTGTCC 61.050 66.667 38.00 25.04 46.13 4.02
5507 10904 3.414700 CGCTGACAAGGCCGTGTC 61.415 66.667 36.06 36.06 46.74 3.67
5508 10905 4.988598 CCGCTGACAAGGCCGTGT 62.989 66.667 25.07 25.07 0.00 4.49
5514 10911 3.058160 CTTGCCCCGCTGACAAGG 61.058 66.667 0.00 0.00 37.68 3.61
5515 10912 3.741476 GCTTGCCCCGCTGACAAG 61.741 66.667 6.53 6.53 42.90 3.16
5516 10913 4.269523 AGCTTGCCCCGCTGACAA 62.270 61.111 0.00 0.00 36.15 3.18
5535 10932 2.043652 CCTTCAGGGCCATGGTGG 60.044 66.667 18.94 15.72 41.55 4.61
5544 10941 0.179936 CCTCAAGCTAGCCTTCAGGG 59.820 60.000 12.13 2.92 38.10 4.45
5545 10942 0.179936 CCCTCAAGCTAGCCTTCAGG 59.820 60.000 12.13 10.20 41.19 3.86
5546 10943 0.463474 GCCCTCAAGCTAGCCTTCAG 60.463 60.000 12.13 0.92 0.00 3.02
5547 10944 1.604378 GCCCTCAAGCTAGCCTTCA 59.396 57.895 12.13 0.00 0.00 3.02
5548 10945 1.153066 GGCCCTCAAGCTAGCCTTC 60.153 63.158 12.13 0.00 42.34 3.46
5549 10946 3.002371 GGCCCTCAAGCTAGCCTT 58.998 61.111 12.13 2.15 42.34 4.35
5550 10947 3.474570 CGGCCCTCAAGCTAGCCT 61.475 66.667 12.13 0.00 43.48 4.58
5553 10950 3.785859 TGGCGGCCCTCAAGCTAG 61.786 66.667 17.97 0.00 0.00 3.42
5554 10951 4.096003 GTGGCGGCCCTCAAGCTA 62.096 66.667 17.97 0.00 0.00 3.32
5569 10966 0.951040 GAGACACCAAGGAAGCCGTG 60.951 60.000 0.00 0.00 32.93 4.94
5570 10967 1.371558 GAGACACCAAGGAAGCCGT 59.628 57.895 0.00 0.00 0.00 5.68
5571 10968 1.376037 GGAGACACCAAGGAAGCCG 60.376 63.158 0.00 0.00 38.79 5.52
5572 10969 1.376037 CGGAGACACCAAGGAAGCC 60.376 63.158 0.00 0.00 38.90 4.35
5573 10970 1.376037 CCGGAGACACCAAGGAAGC 60.376 63.158 0.00 0.00 38.90 3.86
5574 10971 1.296715 CCCGGAGACACCAAGGAAG 59.703 63.158 0.73 0.00 38.90 3.46
5575 10972 2.890766 GCCCGGAGACACCAAGGAA 61.891 63.158 0.73 0.00 38.90 3.36
5576 10973 3.319198 GCCCGGAGACACCAAGGA 61.319 66.667 0.73 0.00 38.90 3.36
5577 10974 3.636231 TGCCCGGAGACACCAAGG 61.636 66.667 0.73 0.00 38.90 3.61
5578 10975 2.358737 GTGCCCGGAGACACCAAG 60.359 66.667 0.73 0.00 38.90 3.61
5579 10976 4.308458 CGTGCCCGGAGACACCAA 62.308 66.667 0.73 0.00 38.90 3.67
5593 10990 4.003788 AAGGGCGTCCTCACCGTG 62.004 66.667 10.20 0.00 44.07 4.94
5594 10991 4.003788 CAAGGGCGTCCTCACCGT 62.004 66.667 10.20 0.00 44.07 4.83
5596 10993 3.553095 AAGCAAGGGCGTCCTCACC 62.553 63.158 10.20 0.00 44.07 4.02
5597 10994 2.032681 AAGCAAGGGCGTCCTCAC 59.967 61.111 10.20 4.19 44.07 3.51
5598 10995 2.347490 GAAGCAAGGGCGTCCTCA 59.653 61.111 10.20 0.00 44.07 3.86
5605 11002 2.283460 AAGCCAGGAAGCAAGGGC 60.283 61.111 0.00 0.00 46.77 5.19
5606 11003 0.251519 AAGAAGCCAGGAAGCAAGGG 60.252 55.000 0.00 0.00 34.23 3.95
5607 11004 1.172175 GAAGAAGCCAGGAAGCAAGG 58.828 55.000 0.00 0.00 34.23 3.61
5608 11005 1.901591 TGAAGAAGCCAGGAAGCAAG 58.098 50.000 0.00 0.00 34.23 4.01
5609 11006 2.165167 CATGAAGAAGCCAGGAAGCAA 58.835 47.619 0.00 0.00 34.23 3.91
5610 11007 1.352017 TCATGAAGAAGCCAGGAAGCA 59.648 47.619 0.00 0.00 34.23 3.91
5611 11008 2.015587 CTCATGAAGAAGCCAGGAAGC 58.984 52.381 0.00 0.00 0.00 3.86
5612 11009 2.026449 ACCTCATGAAGAAGCCAGGAAG 60.026 50.000 0.00 0.00 0.00 3.46
5613 11010 1.988107 ACCTCATGAAGAAGCCAGGAA 59.012 47.619 0.00 0.00 0.00 3.36
5614 11011 1.661463 ACCTCATGAAGAAGCCAGGA 58.339 50.000 0.00 0.00 0.00 3.86
5615 11012 2.089980 CAACCTCATGAAGAAGCCAGG 58.910 52.381 0.00 0.00 0.00 4.45
5616 11013 2.787994 ACAACCTCATGAAGAAGCCAG 58.212 47.619 0.00 0.00 0.00 4.85
5617 11014 2.957402 ACAACCTCATGAAGAAGCCA 57.043 45.000 0.00 0.00 0.00 4.75
5618 11015 3.274288 CCTACAACCTCATGAAGAAGCC 58.726 50.000 0.00 0.00 0.00 4.35
5619 11016 2.680339 GCCTACAACCTCATGAAGAAGC 59.320 50.000 0.00 0.00 0.00 3.86
5620 11017 3.937706 CTGCCTACAACCTCATGAAGAAG 59.062 47.826 0.00 0.00 0.00 2.85
5621 11018 3.307691 CCTGCCTACAACCTCATGAAGAA 60.308 47.826 0.00 0.00 0.00 2.52
5622 11019 2.237143 CCTGCCTACAACCTCATGAAGA 59.763 50.000 0.00 0.00 0.00 2.87
5623 11020 2.237143 TCCTGCCTACAACCTCATGAAG 59.763 50.000 0.00 0.00 0.00 3.02
5624 11021 2.265367 TCCTGCCTACAACCTCATGAA 58.735 47.619 0.00 0.00 0.00 2.57
5625 11022 1.951209 TCCTGCCTACAACCTCATGA 58.049 50.000 0.00 0.00 0.00 3.07
5626 11023 2.569059 CATCCTGCCTACAACCTCATG 58.431 52.381 0.00 0.00 0.00 3.07
5627 11024 1.492176 CCATCCTGCCTACAACCTCAT 59.508 52.381 0.00 0.00 0.00 2.90
5628 11025 0.911769 CCATCCTGCCTACAACCTCA 59.088 55.000 0.00 0.00 0.00 3.86
5629 11026 0.181350 CCCATCCTGCCTACAACCTC 59.819 60.000 0.00 0.00 0.00 3.85
5630 11027 0.550147 ACCCATCCTGCCTACAACCT 60.550 55.000 0.00 0.00 0.00 3.50
5631 11028 0.331616 AACCCATCCTGCCTACAACC 59.668 55.000 0.00 0.00 0.00 3.77
5632 11029 1.463674 CAACCCATCCTGCCTACAAC 58.536 55.000 0.00 0.00 0.00 3.32
5633 11030 0.323360 GCAACCCATCCTGCCTACAA 60.323 55.000 0.00 0.00 32.18 2.41
5634 11031 1.207488 AGCAACCCATCCTGCCTACA 61.207 55.000 0.00 0.00 39.47 2.74
5635 11032 0.749454 CAGCAACCCATCCTGCCTAC 60.749 60.000 0.00 0.00 39.47 3.18
5636 11033 1.609239 CAGCAACCCATCCTGCCTA 59.391 57.895 0.00 0.00 39.47 3.93
5637 11034 2.357836 CAGCAACCCATCCTGCCT 59.642 61.111 0.00 0.00 39.47 4.75
5638 11035 3.455469 GCAGCAACCCATCCTGCC 61.455 66.667 0.62 0.00 44.60 4.85
5640 11037 1.380785 ATGGCAGCAACCCATCCTG 60.381 57.895 0.00 0.00 38.71 3.86
5641 11038 1.380785 CATGGCAGCAACCCATCCT 60.381 57.895 0.00 0.00 41.02 3.24
5642 11039 0.971959 TTCATGGCAGCAACCCATCC 60.972 55.000 0.00 0.00 41.02 3.51
5643 11040 0.174162 GTTCATGGCAGCAACCCATC 59.826 55.000 0.00 0.00 41.02 3.51
5644 11041 0.251922 AGTTCATGGCAGCAACCCAT 60.252 50.000 7.52 0.00 43.70 4.00
5645 11042 1.153524 AGTTCATGGCAGCAACCCA 59.846 52.632 7.52 0.00 36.66 4.51
5646 11043 1.588082 CAGTTCATGGCAGCAACCC 59.412 57.895 7.52 0.00 0.00 4.11
5647 11044 1.588082 CCAGTTCATGGCAGCAACC 59.412 57.895 7.52 0.00 43.83 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.