Multiple sequence alignment - TraesCS6A01G197200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G197200 chr6A 100.000 3062 0 0 1 3062 292666457 292669518 0.000000e+00 5655.0
1 TraesCS6A01G197200 chr6A 85.614 1279 142 36 1 1253 282842154 282843416 0.000000e+00 1304.0
2 TraesCS6A01G197200 chr6A 84.543 1281 156 36 1 1255 282858921 282860185 0.000000e+00 1230.0
3 TraesCS6A01G197200 chr6A 84.731 1264 155 34 1 1243 346192511 346193757 0.000000e+00 1230.0
4 TraesCS6A01G197200 chr6A 88.029 685 71 8 1272 1952 127786825 127787502 0.000000e+00 800.0
5 TraesCS6A01G197200 chr6A 86.550 684 72 11 1272 1954 54771608 54772272 0.000000e+00 736.0
6 TraesCS6A01G197200 chr6A 90.154 325 30 2 1272 1595 486110350 486110027 3.650000e-114 422.0
7 TraesCS6A01G197200 chr6A 89.231 325 33 2 1272 1595 486084766 486084443 3.680000e-109 405.0
8 TraesCS6A01G197200 chr6A 92.473 279 19 2 1295 1572 127729935 127730212 6.150000e-107 398.0
9 TraesCS6A01G197200 chr6A 90.877 285 23 3 1294 1576 127748415 127748698 2.230000e-101 379.0
10 TraesCS6A01G197200 chr4A 83.233 1992 264 55 1 1954 348912383 348910424 0.000000e+00 1764.0
11 TraesCS6A01G197200 chr4A 89.286 1260 105 23 1 1244 492773326 492774571 0.000000e+00 1552.0
12 TraesCS6A01G197200 chr4A 85.624 1266 138 39 1 1243 207533242 207531998 0.000000e+00 1290.0
13 TraesCS6A01G197200 chr4A 85.217 1265 139 37 3 1243 207243728 207244968 0.000000e+00 1256.0
14 TraesCS6A01G197200 chr4A 85.342 1228 146 25 5 1210 512629846 512631061 0.000000e+00 1240.0
15 TraesCS6A01G197200 chr4A 88.947 190 19 2 2224 2412 25972190 25972378 1.840000e-57 233.0
16 TraesCS6A01G197200 chr4A 89.071 183 19 1 2231 2413 169173823 169174004 3.070000e-55 226.0
17 TraesCS6A01G197200 chr4A 86.897 145 11 6 2007 2145 469096233 469096091 4.090000e-34 156.0
18 TraesCS6A01G197200 chr3A 83.286 1765 232 47 1 1734 683318885 683320617 0.000000e+00 1567.0
19 TraesCS6A01G197200 chr3A 88.649 1110 96 26 1 1089 116636473 116635373 0.000000e+00 1325.0
20 TraesCS6A01G197200 chr3A 82.212 1591 213 51 177 1734 683301018 683302571 0.000000e+00 1306.0
21 TraesCS6A01G197200 chr3A 88.987 454 50 0 1584 2037 632681123 632680670 2.060000e-156 562.0
22 TraesCS6A01G197200 chr3A 89.167 120 10 3 2025 2142 356138402 356138520 2.460000e-31 147.0
23 TraesCS6A01G197200 chr3A 90.244 82 5 3 2465 2546 500266293 500266215 1.500000e-18 104.0
24 TraesCS6A01G197200 chr3A 87.805 82 7 3 2465 2546 500224336 500224258 3.250000e-15 93.5
25 TraesCS6A01G197200 chr5A 85.142 1272 137 47 1 1243 280525699 280526947 0.000000e+00 1254.0
26 TraesCS6A01G197200 chr5A 88.486 634 71 2 1294 1926 132226955 132226323 0.000000e+00 765.0
27 TraesCS6A01G197200 chr5A 87.195 656 82 2 1272 1926 132218935 132218281 0.000000e+00 745.0
28 TraesCS6A01G197200 chr5A 89.617 183 18 1 2231 2413 188064725 188064906 6.600000e-57 231.0
29 TraesCS6A01G197200 chr5A 89.071 183 19 1 2231 2413 188090471 188090652 3.070000e-55 226.0
30 TraesCS6A01G197200 chr2A 82.399 1284 165 48 1 1252 361432829 361431575 0.000000e+00 1062.0
31 TraesCS6A01G197200 chr2A 95.285 509 20 3 2556 3062 286860476 286859970 0.000000e+00 804.0
32 TraesCS6A01G197200 chr2A 89.207 454 49 0 1584 2037 90469784 90469331 4.430000e-158 568.0
33 TraesCS6A01G197200 chr2A 89.207 454 49 0 1584 2037 90477680 90477227 4.430000e-158 568.0
34 TraesCS6A01G197200 chr2A 83.457 538 58 27 2540 3060 234375456 234374933 3.570000e-129 472.0
35 TraesCS6A01G197200 chr2A 90.710 183 16 1 2231 2413 380678741 380678922 3.050000e-60 243.0
36 TraesCS6A01G197200 chr2A 88.525 183 20 1 2231 2413 706108796 706108977 1.430000e-53 220.0
37 TraesCS6A01G197200 chr2A 88.525 183 20 1 2231 2413 706116830 706117011 1.430000e-53 220.0
38 TraesCS6A01G197200 chr2A 86.567 134 14 4 2015 2145 651742466 651742334 8.850000e-31 145.0
39 TraesCS6A01G197200 chr7A 82.775 865 100 35 2229 3060 338691965 338692813 0.000000e+00 726.0
40 TraesCS6A01G197200 chr7A 82.695 861 102 33 2229 3057 338699894 338700739 0.000000e+00 721.0
41 TraesCS6A01G197200 chr7A 89.011 455 48 2 1584 2037 157707703 157708156 2.060000e-156 562.0
42 TraesCS6A01G197200 chr7A 88.987 454 50 0 1584 2037 157727520 157727973 2.060000e-156 562.0
43 TraesCS6A01G197200 chr6D 85.547 512 53 12 2554 3054 402285412 402284911 1.630000e-142 516.0
44 TraesCS6A01G197200 chr3D 84.058 552 60 19 2518 3054 368531424 368531962 9.800000e-140 507.0
45 TraesCS6A01G197200 chr3D 83.636 550 63 19 2518 3054 368645619 368646154 2.740000e-135 492.0
46 TraesCS6A01G197200 chr4D 83.900 559 57 22 2518 3060 239503563 239503022 1.270000e-138 503.0
47 TraesCS6A01G197200 chr4B 83.302 539 60 22 2527 3054 307871859 307872378 1.290000e-128 470.0
48 TraesCS6A01G197200 chr5B 82.038 579 72 27 2498 3060 242809550 242808988 5.980000e-127 464.0
49 TraesCS6A01G197200 chr5B 81.865 579 73 27 2498 3060 242817490 242816928 2.780000e-125 459.0
50 TraesCS6A01G197200 chr1A 78.855 629 91 29 2460 3060 400733303 400733917 1.330000e-103 387.0
51 TraesCS6A01G197200 chr1A 76.777 633 88 35 2460 3060 400727618 400727013 1.780000e-77 300.0
52 TraesCS6A01G197200 chr1A 95.413 109 4 1 2460 2567 400720164 400720056 4.060000e-39 172.0
53 TraesCS6A01G197200 chr2B 87.778 90 11 0 2143 2232 592071903 592071814 4.180000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G197200 chr6A 292666457 292669518 3061 False 5655 5655 100.000 1 3062 1 chr6A.!!$F7 3061
1 TraesCS6A01G197200 chr6A 282842154 282843416 1262 False 1304 1304 85.614 1 1253 1 chr6A.!!$F5 1252
2 TraesCS6A01G197200 chr6A 282858921 282860185 1264 False 1230 1230 84.543 1 1255 1 chr6A.!!$F6 1254
3 TraesCS6A01G197200 chr6A 346192511 346193757 1246 False 1230 1230 84.731 1 1243 1 chr6A.!!$F8 1242
4 TraesCS6A01G197200 chr6A 127786825 127787502 677 False 800 800 88.029 1272 1952 1 chr6A.!!$F4 680
5 TraesCS6A01G197200 chr6A 54771608 54772272 664 False 736 736 86.550 1272 1954 1 chr6A.!!$F1 682
6 TraesCS6A01G197200 chr4A 348910424 348912383 1959 True 1764 1764 83.233 1 1954 1 chr4A.!!$R2 1953
7 TraesCS6A01G197200 chr4A 492773326 492774571 1245 False 1552 1552 89.286 1 1244 1 chr4A.!!$F4 1243
8 TraesCS6A01G197200 chr4A 207531998 207533242 1244 True 1290 1290 85.624 1 1243 1 chr4A.!!$R1 1242
9 TraesCS6A01G197200 chr4A 207243728 207244968 1240 False 1256 1256 85.217 3 1243 1 chr4A.!!$F3 1240
10 TraesCS6A01G197200 chr4A 512629846 512631061 1215 False 1240 1240 85.342 5 1210 1 chr4A.!!$F5 1205
11 TraesCS6A01G197200 chr3A 683318885 683320617 1732 False 1567 1567 83.286 1 1734 1 chr3A.!!$F3 1733
12 TraesCS6A01G197200 chr3A 116635373 116636473 1100 True 1325 1325 88.649 1 1089 1 chr3A.!!$R1 1088
13 TraesCS6A01G197200 chr3A 683301018 683302571 1553 False 1306 1306 82.212 177 1734 1 chr3A.!!$F2 1557
14 TraesCS6A01G197200 chr5A 280525699 280526947 1248 False 1254 1254 85.142 1 1243 1 chr5A.!!$F3 1242
15 TraesCS6A01G197200 chr5A 132226323 132226955 632 True 765 765 88.486 1294 1926 1 chr5A.!!$R2 632
16 TraesCS6A01G197200 chr5A 132218281 132218935 654 True 745 745 87.195 1272 1926 1 chr5A.!!$R1 654
17 TraesCS6A01G197200 chr2A 361431575 361432829 1254 True 1062 1062 82.399 1 1252 1 chr2A.!!$R5 1251
18 TraesCS6A01G197200 chr2A 286859970 286860476 506 True 804 804 95.285 2556 3062 1 chr2A.!!$R4 506
19 TraesCS6A01G197200 chr2A 234374933 234375456 523 True 472 472 83.457 2540 3060 1 chr2A.!!$R3 520
20 TraesCS6A01G197200 chr7A 338691965 338692813 848 False 726 726 82.775 2229 3060 1 chr7A.!!$F3 831
21 TraesCS6A01G197200 chr7A 338699894 338700739 845 False 721 721 82.695 2229 3057 1 chr7A.!!$F4 828
22 TraesCS6A01G197200 chr6D 402284911 402285412 501 True 516 516 85.547 2554 3054 1 chr6D.!!$R1 500
23 TraesCS6A01G197200 chr3D 368531424 368531962 538 False 507 507 84.058 2518 3054 1 chr3D.!!$F1 536
24 TraesCS6A01G197200 chr3D 368645619 368646154 535 False 492 492 83.636 2518 3054 1 chr3D.!!$F2 536
25 TraesCS6A01G197200 chr4D 239503022 239503563 541 True 503 503 83.900 2518 3060 1 chr4D.!!$R1 542
26 TraesCS6A01G197200 chr4B 307871859 307872378 519 False 470 470 83.302 2527 3054 1 chr4B.!!$F1 527
27 TraesCS6A01G197200 chr5B 242808988 242809550 562 True 464 464 82.038 2498 3060 1 chr5B.!!$R1 562
28 TraesCS6A01G197200 chr5B 242816928 242817490 562 True 459 459 81.865 2498 3060 1 chr5B.!!$R2 562
29 TraesCS6A01G197200 chr1A 400733303 400733917 614 False 387 387 78.855 2460 3060 1 chr1A.!!$F1 600
30 TraesCS6A01G197200 chr1A 400727013 400727618 605 True 300 300 76.777 2460 3060 1 chr1A.!!$R2 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 745 0.109597 GCATGGCAAGAGGTGAAACG 60.110 55.0 0.0 0.0 38.12 3.60 F
942 993 0.260230 TGGAAAGAAAGGGTGCCACA 59.740 50.0 0.0 0.0 0.00 4.17 F
1654 1742 0.107848 GTATAGTGCGGTGGCTTGGT 60.108 55.0 0.0 0.0 40.82 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1637 0.108992 ACATGTACCACTACACCGCG 60.109 55.000 0.0 0.0 35.63 6.46 R
1954 2042 0.247460 CACGTCCCTGCTTCAGATGA 59.753 55.000 0.0 0.0 32.44 2.92 R
2629 2747 4.882842 ACCCCGTGCTCAAATTATTTTT 57.117 36.364 0.0 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.433173 GGTATGATGGAAACTAAGGCGGT 60.433 47.826 0.00 0.00 0.00 5.68
51 52 1.411977 TGGAACAAAACACCAGGCATG 59.588 47.619 0.00 0.00 31.92 4.06
192 201 1.343465 GCAACGCTATAAGAGGGGCTA 59.657 52.381 0.00 0.00 42.42 3.93
195 204 2.960163 ACGCTATAAGAGGGGCTAAGT 58.040 47.619 0.00 0.00 42.42 2.24
248 262 1.670059 AGGAAAGGTGGGTTAGAGGG 58.330 55.000 0.00 0.00 0.00 4.30
302 325 5.109210 CAAGTGGTTGACATAGCGATAGAA 58.891 41.667 0.00 0.00 35.46 2.10
305 328 4.449068 GTGGTTGACATAGCGATAGAATGG 59.551 45.833 0.00 0.00 35.90 3.16
314 337 3.983741 AGCGATAGAATGGACAACTAGC 58.016 45.455 0.00 0.00 39.76 3.42
321 344 4.338879 AGAATGGACAACTAGCAAAGCAT 58.661 39.130 0.00 0.00 0.00 3.79
364 387 4.037208 GGTATGGTCATCTTGCCTGAAATG 59.963 45.833 0.00 0.00 0.00 2.32
405 428 2.031944 GTCCAAGAAGAAGACAAACGGC 60.032 50.000 0.00 0.00 0.00 5.68
408 431 0.602905 AGAAGAAGACAAACGGCCGG 60.603 55.000 31.76 14.78 0.00 6.13
432 455 1.202582 CGAACGGATCCTCACAACTCT 59.797 52.381 10.75 0.00 0.00 3.24
529 554 3.429043 GCATGATGCACAACCAAGG 57.571 52.632 13.36 0.00 44.26 3.61
536 561 1.548081 TGCACAACCAAGGATGATGG 58.452 50.000 3.18 0.00 43.84 3.51
644 670 6.406177 GCATATTGATGAAACACCACCTTCAT 60.406 38.462 0.00 0.00 43.34 2.57
677 707 3.175594 TCTCCCGTTTATGTACCCAACT 58.824 45.455 0.00 0.00 0.00 3.16
685 715 9.729281 CCCGTTTATGTACCCAACTATATTAAT 57.271 33.333 0.00 0.00 0.00 1.40
714 745 0.109597 GCATGGCAAGAGGTGAAACG 60.110 55.000 0.00 0.00 38.12 3.60
753 787 5.655090 AGTTAGGCATTTTAAATTAGGCCGT 59.345 36.000 9.30 2.69 45.79 5.68
819 861 7.769719 GCAATTTAATGCAACAACAATTCTG 57.230 32.000 0.00 0.00 45.70 3.02
865 908 4.872124 TGATGCGGATGATATATGCAAGTC 59.128 41.667 0.00 0.00 39.26 3.01
912 959 7.322938 CGTTGATAAGAGCATTATGAAGCATTG 59.677 37.037 0.00 0.00 0.00 2.82
942 993 0.260230 TGGAAAGAAAGGGTGCCACA 59.740 50.000 0.00 0.00 0.00 4.17
944 995 1.478654 GGAAAGAAAGGGTGCCACAGA 60.479 52.381 0.00 0.00 0.00 3.41
968 1019 1.532007 GATAACGAAAACGGTGCCACA 59.468 47.619 0.00 0.00 0.00 4.17
975 1026 0.529555 AAACGGTGCCACAACAATGC 60.530 50.000 0.00 0.00 0.00 3.56
1025 1076 3.316868 CCGGTGGAAAATAACAAGTGTGT 59.683 43.478 0.00 0.00 40.75 3.72
1045 1101 0.798776 GGAACATGCAAGAGTGACGG 59.201 55.000 0.00 0.00 0.00 4.79
1110 1170 3.806507 GCAATGGGGAACATGCAAGAAAA 60.807 43.478 0.00 0.00 40.44 2.29
1153 1217 4.031028 GCGAGCATTTCATACAACACATC 58.969 43.478 0.00 0.00 0.00 3.06
1158 1223 6.327154 AGCATTTCATACAACACATCACATG 58.673 36.000 0.00 0.00 0.00 3.21
1164 1229 3.206034 ACAACACATCACATGCATTCG 57.794 42.857 0.00 0.00 0.00 3.34
1166 1231 3.004629 ACAACACATCACATGCATTCGTT 59.995 39.130 0.00 0.00 0.00 3.85
1167 1232 3.476295 ACACATCACATGCATTCGTTC 57.524 42.857 0.00 0.00 0.00 3.95
1168 1233 2.813172 ACACATCACATGCATTCGTTCA 59.187 40.909 0.00 0.00 0.00 3.18
1169 1234 3.441222 ACACATCACATGCATTCGTTCAT 59.559 39.130 0.00 0.00 0.00 2.57
1170 1235 3.789224 CACATCACATGCATTCGTTCATG 59.211 43.478 0.00 0.79 44.08 3.07
1171 1236 3.181494 ACATCACATGCATTCGTTCATGG 60.181 43.478 0.00 0.00 43.11 3.66
1172 1237 2.709213 TCACATGCATTCGTTCATGGA 58.291 42.857 0.00 0.00 43.11 3.41
1176 1241 0.321210 TGCATTCGTTCATGGACGGT 60.321 50.000 25.81 12.62 42.98 4.83
1178 1244 1.720805 CATTCGTTCATGGACGGTCA 58.279 50.000 25.81 11.17 42.98 4.02
1184 1254 1.134367 GTTCATGGACGGTCATCTCGA 59.866 52.381 10.76 0.00 0.00 4.04
1190 1260 1.065251 GGACGGTCATCTCGAGGTTAC 59.935 57.143 13.56 7.07 0.00 2.50
1212 1282 0.934496 CTTCGAGGTGTGCGTTTTCA 59.066 50.000 0.00 0.00 0.00 2.69
1244 1317 1.808945 GTTCGTCGAGGGAAGTAGTCA 59.191 52.381 5.12 0.00 0.00 3.41
1269 1342 2.100418 ACGGGTCTTCGCTTTATAGTCC 59.900 50.000 0.00 0.00 0.00 3.85
1314 1387 2.594592 GTGGTGGAACTTGGCGCT 60.595 61.111 7.64 0.00 36.74 5.92
1381 1458 1.267806 ACATGGTTCGTAGACGTTCGT 59.732 47.619 0.00 0.00 40.80 3.85
1403 1481 2.490903 GTCTTCCGTAGAGGTACTTGCA 59.509 50.000 0.00 0.00 41.55 4.08
1415 1493 2.418628 GGTACTTGCACATGCGTTACAT 59.581 45.455 0.00 0.00 45.83 2.29
1427 1505 1.670674 GCGTTACATGGGTCTTCGACA 60.671 52.381 0.00 0.00 33.68 4.35
1434 1512 0.314935 TGGGTCTTCGACAACGGTAC 59.685 55.000 0.00 0.00 40.21 3.34
1552 1637 4.130281 CGGTCTTCGCGTTTCGGC 62.130 66.667 5.77 0.00 39.05 5.54
1577 1662 4.615682 CGGTGTAGTGGTACATGTTAACGA 60.616 45.833 2.30 0.00 44.52 3.85
1591 1676 6.092122 ACATGTTAACGATCATTGTGGTACTG 59.908 38.462 0.26 0.00 0.00 2.74
1593 1678 2.691409 ACGATCATTGTGGTACTGGG 57.309 50.000 0.00 0.00 0.00 4.45
1594 1679 1.906574 ACGATCATTGTGGTACTGGGT 59.093 47.619 0.00 0.00 0.00 4.51
1650 1738 0.902531 AGTTGTATAGTGCGGTGGCT 59.097 50.000 0.00 0.00 40.82 4.75
1654 1742 0.107848 GTATAGTGCGGTGGCTTGGT 60.108 55.000 0.00 0.00 40.82 3.67
1696 1784 2.647158 GCGGTTCTCCTCCCGTTCT 61.647 63.158 0.00 0.00 45.91 3.01
1707 1795 2.361438 CCTCCCGTTCTATGTACAGGAC 59.639 54.545 0.33 0.00 0.00 3.85
1709 1797 1.747355 CCCGTTCTATGTACAGGACGT 59.253 52.381 13.20 0.00 44.52 4.34
1713 1801 3.306973 CGTTCTATGTACAGGACGTCGTA 59.693 47.826 10.91 4.81 41.68 3.43
1734 1822 4.162690 GGAGGTTGAGGCCGCGAT 62.163 66.667 8.23 0.00 0.00 4.58
1736 1824 3.665675 GAGGTTGAGGCCGCGATGT 62.666 63.158 8.23 0.00 0.00 3.06
1900 1988 1.901948 TCAGGGTCGAAGCTGACGT 60.902 57.895 12.10 0.00 39.83 4.34
1904 1992 1.007734 GGTCGAAGCTGACGTGACA 60.008 57.895 12.10 0.00 39.83 3.58
1915 2003 4.351938 CGTGACAAGGGGCGTCGA 62.352 66.667 0.00 0.00 36.11 4.20
1930 2018 2.185350 CGAGCTTCGCAGGTGGAT 59.815 61.111 0.00 0.00 31.14 3.41
1933 2021 0.747255 GAGCTTCGCAGGTGGATCTA 59.253 55.000 0.00 0.00 0.00 1.98
1943 2031 0.674534 GGTGGATCTAAGGTCGCGAT 59.325 55.000 14.06 0.00 0.00 4.58
1957 2045 2.583319 CGATGCAGCGACGGTCAT 60.583 61.111 21.79 4.17 0.00 3.06
1958 2046 2.580470 CGATGCAGCGACGGTCATC 61.580 63.158 21.79 20.07 33.79 2.92
1959 2047 1.227089 GATGCAGCGACGGTCATCT 60.227 57.895 21.51 1.59 34.19 2.90
1960 2048 1.485838 GATGCAGCGACGGTCATCTG 61.486 60.000 21.51 17.82 34.19 2.90
1961 2049 1.948721 ATGCAGCGACGGTCATCTGA 61.949 55.000 23.28 13.07 0.00 3.27
1962 2050 1.446099 GCAGCGACGGTCATCTGAA 60.446 57.895 23.28 0.00 0.00 3.02
1963 2051 1.416813 GCAGCGACGGTCATCTGAAG 61.417 60.000 23.28 2.87 0.00 3.02
1964 2052 1.153745 AGCGACGGTCATCTGAAGC 60.154 57.895 9.10 1.49 0.00 3.86
1965 2053 1.446099 GCGACGGTCATCTGAAGCA 60.446 57.895 9.10 0.00 0.00 3.91
1966 2054 1.416813 GCGACGGTCATCTGAAGCAG 61.417 60.000 9.10 0.00 0.00 4.24
1967 2055 0.803768 CGACGGTCATCTGAAGCAGG 60.804 60.000 9.10 0.00 31.51 4.85
1968 2056 0.460987 GACGGTCATCTGAAGCAGGG 60.461 60.000 2.62 0.00 31.51 4.45
1969 2057 0.904865 ACGGTCATCTGAAGCAGGGA 60.905 55.000 0.00 0.00 31.51 4.20
1970 2058 0.460987 CGGTCATCTGAAGCAGGGAC 60.461 60.000 0.00 0.00 36.35 4.46
1971 2059 0.460987 GGTCATCTGAAGCAGGGACG 60.461 60.000 0.00 0.00 37.20 4.79
1972 2060 0.247736 GTCATCTGAAGCAGGGACGT 59.752 55.000 0.00 0.00 31.10 4.34
1973 2061 0.247460 TCATCTGAAGCAGGGACGTG 59.753 55.000 0.00 0.00 31.51 4.49
1974 2062 0.742281 CATCTGAAGCAGGGACGTGG 60.742 60.000 0.00 0.00 31.51 4.94
1975 2063 1.903877 ATCTGAAGCAGGGACGTGGG 61.904 60.000 0.00 0.00 31.51 4.61
1976 2064 3.612247 CTGAAGCAGGGACGTGGGG 62.612 68.421 0.00 0.00 0.00 4.96
2065 2153 2.503061 CCACGAGGCCATGAGAGG 59.497 66.667 5.01 0.00 0.00 3.69
2074 2162 2.759783 CCATGAGAGGCACAACGAG 58.240 57.895 0.00 0.00 0.00 4.18
2075 2163 0.247460 CCATGAGAGGCACAACGAGA 59.753 55.000 0.00 0.00 0.00 4.04
2076 2164 1.338105 CCATGAGAGGCACAACGAGAA 60.338 52.381 0.00 0.00 0.00 2.87
2077 2165 1.998315 CATGAGAGGCACAACGAGAAG 59.002 52.381 0.00 0.00 0.00 2.85
2078 2166 0.318441 TGAGAGGCACAACGAGAAGG 59.682 55.000 0.00 0.00 0.00 3.46
2079 2167 0.390472 GAGAGGCACAACGAGAAGGG 60.390 60.000 0.00 0.00 0.00 3.95
2080 2168 2.032681 AGGCACAACGAGAAGGGC 59.967 61.111 0.00 0.00 0.00 5.19
2081 2169 2.032681 GGCACAACGAGAAGGGCT 59.967 61.111 0.00 0.00 0.00 5.19
2082 2170 2.035442 GGCACAACGAGAAGGGCTC 61.035 63.158 0.00 0.00 40.38 4.70
2109 2197 2.819595 CGTGTGCGGGATGGGAAG 60.820 66.667 0.00 0.00 0.00 3.46
2110 2198 2.438434 GTGTGCGGGATGGGAAGG 60.438 66.667 0.00 0.00 0.00 3.46
2111 2199 2.609299 TGTGCGGGATGGGAAGGA 60.609 61.111 0.00 0.00 0.00 3.36
2112 2200 2.190578 GTGCGGGATGGGAAGGAG 59.809 66.667 0.00 0.00 0.00 3.69
2113 2201 3.797353 TGCGGGATGGGAAGGAGC 61.797 66.667 0.00 0.00 0.00 4.70
2114 2202 4.918201 GCGGGATGGGAAGGAGCG 62.918 72.222 0.00 0.00 0.00 5.03
2115 2203 4.241555 CGGGATGGGAAGGAGCGG 62.242 72.222 0.00 0.00 0.00 5.52
2116 2204 3.090532 GGGATGGGAAGGAGCGGT 61.091 66.667 0.00 0.00 0.00 5.68
2117 2205 2.190578 GGATGGGAAGGAGCGGTG 59.809 66.667 0.00 0.00 0.00 4.94
2118 2206 2.514824 GATGGGAAGGAGCGGTGC 60.515 66.667 0.00 0.00 0.00 5.01
2119 2207 4.473520 ATGGGAAGGAGCGGTGCG 62.474 66.667 0.00 0.00 0.00 5.34
2168 2256 3.402681 CCATGGCGTCCCTGACCT 61.403 66.667 0.00 0.00 0.00 3.85
2169 2257 2.187946 CATGGCGTCCCTGACCTC 59.812 66.667 0.00 0.00 0.00 3.85
2170 2258 3.083997 ATGGCGTCCCTGACCTCC 61.084 66.667 0.00 0.00 0.00 4.30
2174 2262 2.442272 CGTCCCTGACCTCCGGAT 60.442 66.667 3.57 0.00 0.00 4.18
2175 2263 2.491022 CGTCCCTGACCTCCGGATC 61.491 68.421 3.57 0.05 0.00 3.36
2176 2264 1.381327 GTCCCTGACCTCCGGATCA 60.381 63.158 3.57 6.02 0.00 2.92
2177 2265 1.381327 TCCCTGACCTCCGGATCAC 60.381 63.158 3.57 0.00 0.00 3.06
2178 2266 1.685765 CCCTGACCTCCGGATCACA 60.686 63.158 3.57 4.46 0.00 3.58
2179 2267 1.264749 CCCTGACCTCCGGATCACAA 61.265 60.000 3.57 0.00 0.00 3.33
2180 2268 0.108138 CCTGACCTCCGGATCACAAC 60.108 60.000 3.57 0.00 0.00 3.32
2181 2269 0.458543 CTGACCTCCGGATCACAACG 60.459 60.000 3.57 0.00 0.00 4.10
2186 2274 4.402528 CCGGATCACAACGGGGCA 62.403 66.667 0.00 0.00 46.08 5.36
2187 2275 2.819595 CGGATCACAACGGGGCAG 60.820 66.667 0.00 0.00 0.00 4.85
2188 2276 3.134127 GGATCACAACGGGGCAGC 61.134 66.667 0.00 0.00 0.00 5.25
2189 2277 3.499737 GATCACAACGGGGCAGCG 61.500 66.667 0.00 0.00 0.00 5.18
2190 2278 3.950794 GATCACAACGGGGCAGCGA 62.951 63.158 0.00 0.00 0.00 4.93
2191 2279 3.958147 ATCACAACGGGGCAGCGAG 62.958 63.158 0.00 0.00 0.00 5.03
2200 2288 4.035102 GGCAGCGAGGAGGGGTTT 62.035 66.667 0.00 0.00 0.00 3.27
2201 2289 2.436824 GCAGCGAGGAGGGGTTTC 60.437 66.667 0.00 0.00 0.00 2.78
2202 2290 2.960688 GCAGCGAGGAGGGGTTTCT 61.961 63.158 0.00 0.00 0.00 2.52
2203 2291 1.219393 CAGCGAGGAGGGGTTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
2209 2297 3.388841 GAGGGGTTTCTCCAGCGA 58.611 61.111 0.00 0.00 38.11 4.93
2210 2298 1.219393 GAGGGGTTTCTCCAGCGAG 59.781 63.158 0.00 0.00 38.11 5.03
2211 2299 2.436824 GGGGTTTCTCCAGCGAGC 60.437 66.667 0.00 0.00 35.94 5.03
2212 2300 2.815647 GGGTTTCTCCAGCGAGCG 60.816 66.667 0.00 0.00 35.94 5.03
2213 2301 2.815647 GGTTTCTCCAGCGAGCGG 60.816 66.667 0.00 0.71 35.94 5.52
2214 2302 3.491652 GTTTCTCCAGCGAGCGGC 61.492 66.667 0.00 0.00 44.05 6.53
2223 2311 4.708968 GCGAGCGGCGGGATAGAG 62.709 72.222 9.78 0.00 41.29 2.43
2224 2312 4.708968 CGAGCGGCGGGATAGAGC 62.709 72.222 9.78 0.00 36.03 4.09
2225 2313 4.708968 GAGCGGCGGGATAGAGCG 62.709 72.222 9.78 0.00 0.00 5.03
2228 2316 4.344474 CGGCGGGATAGAGCGGAC 62.344 72.222 0.00 0.00 36.03 4.79
2229 2317 4.344474 GGCGGGATAGAGCGGACG 62.344 72.222 0.00 0.00 0.00 4.79
2230 2318 4.344474 GCGGGATAGAGCGGACGG 62.344 72.222 0.00 0.00 0.00 4.79
2231 2319 4.344474 CGGGATAGAGCGGACGGC 62.344 72.222 0.00 0.00 44.05 5.68
2386 2475 0.326618 GGAGGGAGGATGAGGGAACA 60.327 60.000 0.00 0.00 0.00 3.18
2575 2673 6.894682 TGCTCTCTCTCTCTCTCACTTATAA 58.105 40.000 0.00 0.00 0.00 0.98
2598 2713 9.774742 ATAAACTTTAGCAGAAAAGAATTAGCG 57.225 29.630 11.70 0.00 38.50 4.26
2599 2714 6.183309 ACTTTAGCAGAAAAGAATTAGCGG 57.817 37.500 11.70 0.00 38.50 5.52
2601 2716 6.430000 ACTTTAGCAGAAAAGAATTAGCGGAA 59.570 34.615 11.70 0.00 38.50 4.30
2630 2748 7.898014 AAAAAGAAAGAGAAAGCTAGGGAAA 57.102 32.000 0.00 0.00 0.00 3.13
2631 2749 7.898014 AAAAGAAAGAGAAAGCTAGGGAAAA 57.102 32.000 0.00 0.00 0.00 2.29
2692 2816 7.654520 CACAAAAGAATGTGTGATCCAAGAAAT 59.345 33.333 0.00 0.00 46.56 2.17
2699 2824 8.599624 AATGTGTGATCCAAGAAATTAGGAAT 57.400 30.769 0.00 0.00 34.62 3.01
2782 2912 3.568443 GGTTTGGTAAAAGGAAGGTCCA 58.432 45.455 0.00 0.00 39.61 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.053424 TTGTTCCACTCTTACCGCCT 58.947 50.000 0.00 0.00 0.00 5.52
25 26 4.204012 CCTGGTGTTTTGTTCCACTCTTA 58.796 43.478 0.00 0.00 0.00 2.10
192 201 7.013846 TGTTTGGCTATGTTACTGCTTTTACTT 59.986 33.333 0.00 0.00 0.00 2.24
195 204 6.885952 TGTTTGGCTATGTTACTGCTTTTA 57.114 33.333 0.00 0.00 0.00 1.52
248 262 2.624838 CCTCCCATATTGCCATGTCAAC 59.375 50.000 0.00 0.00 0.00 3.18
302 325 5.102953 TCTATGCTTTGCTAGTTGTCCAT 57.897 39.130 0.00 0.00 0.00 3.41
305 328 9.482627 ACTTATATCTATGCTTTGCTAGTTGTC 57.517 33.333 0.00 0.00 0.00 3.18
321 344 8.967918 CCATACCCTCGAAATCACTTATATCTA 58.032 37.037 0.00 0.00 0.00 1.98
364 387 0.949105 TCGTTCTTCTTCCTTGCGGC 60.949 55.000 0.00 0.00 0.00 6.53
405 428 2.061182 GAGGATCCGTTCGACTCCGG 62.061 65.000 5.98 10.31 45.55 5.14
408 431 0.809385 TGTGAGGATCCGTTCGACTC 59.191 55.000 5.98 0.00 0.00 3.36
432 455 2.739913 CGTTAGCTTCGGTTTCATTCCA 59.260 45.455 0.00 0.00 0.00 3.53
529 554 7.530010 CATATTTAAACCGGACATCCATCATC 58.470 38.462 9.46 0.00 35.14 2.92
536 561 5.460646 CCATGCATATTTAAACCGGACATC 58.539 41.667 9.46 0.00 0.00 3.06
685 715 3.005684 CCTCTTGCCATGCTTAACAACAA 59.994 43.478 0.00 0.00 0.00 2.83
695 726 0.109597 CGTTTCACCTCTTGCCATGC 60.110 55.000 0.00 0.00 0.00 4.06
714 745 7.611213 ATGCCTAACTGTGTATTTTACTCAC 57.389 36.000 0.00 0.00 0.00 3.51
746 780 4.135306 TGTTGTTTGATGTTTACGGCCTA 58.865 39.130 0.00 0.00 0.00 3.93
753 787 6.150396 ACCGGAATTGTTGTTTGATGTTTA 57.850 33.333 9.46 0.00 0.00 2.01
886 929 6.291067 TGCTTCATAATGCTCTTATCAACG 57.709 37.500 0.00 0.00 0.00 4.10
942 993 3.240069 CACCGTTTTCGTTATCGTCTCT 58.760 45.455 0.00 0.00 42.35 3.10
944 995 1.723003 GCACCGTTTTCGTTATCGTCT 59.277 47.619 0.00 0.00 42.35 4.18
968 1019 0.536460 ACCGGAACCGAAGCATTGTT 60.536 50.000 9.46 0.00 42.83 2.83
975 1026 0.523072 TCGAGTTACCGGAACCGAAG 59.477 55.000 9.46 1.47 42.83 3.79
1025 1076 1.511850 CGTCACTCTTGCATGTTCCA 58.488 50.000 0.00 0.00 0.00 3.53
1110 1170 1.680522 TTTGCACCATGCCCAACGTT 61.681 50.000 0.00 0.00 44.23 3.99
1153 1217 2.788750 CGTCCATGAACGAATGCATGTG 60.789 50.000 0.00 0.00 45.37 3.21
1158 1223 0.373716 GACCGTCCATGAACGAATGC 59.626 55.000 5.86 0.00 45.37 3.56
1164 1229 1.134367 TCGAGATGACCGTCCATGAAC 59.866 52.381 0.00 0.00 0.00 3.18
1166 1231 1.025041 CTCGAGATGACCGTCCATGA 58.975 55.000 6.58 0.00 0.00 3.07
1167 1232 0.031314 CCTCGAGATGACCGTCCATG 59.969 60.000 15.71 0.00 0.00 3.66
1168 1233 0.395862 ACCTCGAGATGACCGTCCAT 60.396 55.000 15.71 0.00 0.00 3.41
1169 1234 0.611062 AACCTCGAGATGACCGTCCA 60.611 55.000 15.71 0.00 0.00 4.02
1170 1235 1.065251 GTAACCTCGAGATGACCGTCC 59.935 57.143 15.71 0.00 0.00 4.79
1171 1236 1.741706 TGTAACCTCGAGATGACCGTC 59.258 52.381 15.71 0.00 0.00 4.79
1172 1237 1.471684 GTGTAACCTCGAGATGACCGT 59.528 52.381 15.71 0.00 0.00 4.83
1201 1271 3.556365 TCGATACACTTTGAAAACGCACA 59.444 39.130 0.00 0.00 0.00 4.57
1212 1282 3.818961 TCGACGAACTCGATACACTTT 57.181 42.857 6.05 0.00 46.75 2.66
1244 1317 3.814005 ATAAAGCGAAGACCCGTGTAT 57.186 42.857 0.00 0.00 0.00 2.29
1314 1387 5.622914 GCGAGTACAACTACTTCCCAATACA 60.623 44.000 0.00 0.00 32.96 2.29
1381 1458 2.490903 GCAAGTACCTCTACGGAAGACA 59.509 50.000 0.00 0.00 36.31 3.41
1427 1505 1.408702 ACAACGTGTACCAGTACCGTT 59.591 47.619 21.12 21.12 44.98 4.44
1434 1512 2.693797 ACGACTACAACGTGTACCAG 57.306 50.000 0.00 0.00 42.37 4.00
1552 1637 0.108992 ACATGTACCACTACACCGCG 60.109 55.000 0.00 0.00 35.63 6.46
1577 1662 1.992557 ACCACCCAGTACCACAATGAT 59.007 47.619 0.00 0.00 0.00 2.45
1591 1676 4.029809 CCAAGACCCGGACCACCC 62.030 72.222 0.73 0.00 0.00 4.61
1611 1696 3.444388 ACTACGTTGAGAGAACCTGGATC 59.556 47.826 3.44 0.00 0.00 3.36
1650 1738 0.320683 CTGGATCAGTGTCGCACCAA 60.321 55.000 6.39 0.00 34.49 3.67
1654 1742 0.678950 TTGACTGGATCAGTGTCGCA 59.321 50.000 5.20 0.00 45.44 5.10
1658 1746 0.392706 TGCGTTGACTGGATCAGTGT 59.607 50.000 5.20 0.00 45.44 3.55
1662 1750 1.737735 CGCTGCGTTGACTGGATCA 60.738 57.895 14.93 0.00 34.65 2.92
1707 1795 1.469251 CCTCAACCTCCATGTACGACG 60.469 57.143 0.00 0.00 0.00 5.12
1709 1797 0.535335 GCCTCAACCTCCATGTACGA 59.465 55.000 0.00 0.00 0.00 3.43
1713 1801 2.671070 CGGCCTCAACCTCCATGT 59.329 61.111 0.00 0.00 0.00 3.21
1736 1824 2.257371 CTTCAGTTCGTCGGCCGA 59.743 61.111 27.28 27.28 45.66 5.54
1900 1988 4.373116 GCTCGACGCCCCTTGTCA 62.373 66.667 0.00 0.00 36.11 3.58
1904 1992 4.436998 CGAAGCTCGACGCCCCTT 62.437 66.667 0.00 0.00 43.74 3.95
1930 2018 1.226974 GCTGCATCGCGACCTTAGA 60.227 57.895 12.93 0.00 0.00 2.10
1943 2031 2.125952 CAGATGACCGTCGCTGCA 60.126 61.111 0.00 0.00 0.00 4.41
1954 2042 0.247460 CACGTCCCTGCTTCAGATGA 59.753 55.000 0.00 0.00 32.44 2.92
1955 2043 0.742281 CCACGTCCCTGCTTCAGATG 60.742 60.000 0.00 0.00 32.44 2.90
1956 2044 1.599047 CCACGTCCCTGCTTCAGAT 59.401 57.895 0.00 0.00 32.44 2.90
1957 2045 2.583441 CCCACGTCCCTGCTTCAGA 61.583 63.158 0.00 0.00 32.44 3.27
1958 2046 2.046892 CCCACGTCCCTGCTTCAG 60.047 66.667 0.00 0.00 0.00 3.02
1959 2047 3.636231 CCCCACGTCCCTGCTTCA 61.636 66.667 0.00 0.00 0.00 3.02
2048 2136 2.503061 CCTCTCATGGCCTCGTGG 59.497 66.667 3.32 0.00 0.00 4.94
2049 2137 2.202987 GCCTCTCATGGCCTCGTG 60.203 66.667 3.32 0.00 46.82 4.35
2056 2144 0.247460 TCTCGTTGTGCCTCTCATGG 59.753 55.000 0.00 0.00 0.00 3.66
2057 2145 1.998315 CTTCTCGTTGTGCCTCTCATG 59.002 52.381 0.00 0.00 0.00 3.07
2058 2146 1.066573 CCTTCTCGTTGTGCCTCTCAT 60.067 52.381 0.00 0.00 0.00 2.90
2059 2147 0.318441 CCTTCTCGTTGTGCCTCTCA 59.682 55.000 0.00 0.00 0.00 3.27
2060 2148 0.390472 CCCTTCTCGTTGTGCCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
2061 2149 1.674057 CCCTTCTCGTTGTGCCTCT 59.326 57.895 0.00 0.00 0.00 3.69
2062 2150 2.035442 GCCCTTCTCGTTGTGCCTC 61.035 63.158 0.00 0.00 0.00 4.70
2063 2151 2.032681 GCCCTTCTCGTTGTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
2064 2152 2.032681 AGCCCTTCTCGTTGTGCC 59.967 61.111 0.00 0.00 0.00 5.01
2065 2153 3.567473 GAGCCCTTCTCGTTGTGC 58.433 61.111 0.00 0.00 31.20 4.57
2092 2180 2.819595 CTTCCCATCCCGCACACG 60.820 66.667 0.00 0.00 39.67 4.49
2093 2181 2.438434 CCTTCCCATCCCGCACAC 60.438 66.667 0.00 0.00 0.00 3.82
2094 2182 2.609299 TCCTTCCCATCCCGCACA 60.609 61.111 0.00 0.00 0.00 4.57
2095 2183 2.190578 CTCCTTCCCATCCCGCAC 59.809 66.667 0.00 0.00 0.00 5.34
2096 2184 3.797353 GCTCCTTCCCATCCCGCA 61.797 66.667 0.00 0.00 0.00 5.69
2097 2185 4.918201 CGCTCCTTCCCATCCCGC 62.918 72.222 0.00 0.00 0.00 6.13
2098 2186 4.241555 CCGCTCCTTCCCATCCCG 62.242 72.222 0.00 0.00 0.00 5.14
2099 2187 3.090532 ACCGCTCCTTCCCATCCC 61.091 66.667 0.00 0.00 0.00 3.85
2100 2188 2.190578 CACCGCTCCTTCCCATCC 59.809 66.667 0.00 0.00 0.00 3.51
2101 2189 2.514824 GCACCGCTCCTTCCCATC 60.515 66.667 0.00 0.00 0.00 3.51
2102 2190 4.473520 CGCACCGCTCCTTCCCAT 62.474 66.667 0.00 0.00 0.00 4.00
2151 2239 3.391665 GAGGTCAGGGACGCCATGG 62.392 68.421 7.63 7.63 35.84 3.66
2152 2240 2.187946 GAGGTCAGGGACGCCATG 59.812 66.667 4.47 4.47 36.56 3.66
2153 2241 3.083997 GGAGGTCAGGGACGCCAT 61.084 66.667 0.00 0.00 32.65 4.40
2169 2257 4.402528 TGCCCCGTTGTGATCCGG 62.403 66.667 0.00 0.00 43.82 5.14
2170 2258 2.819595 CTGCCCCGTTGTGATCCG 60.820 66.667 0.00 0.00 0.00 4.18
2171 2259 3.134127 GCTGCCCCGTTGTGATCC 61.134 66.667 0.00 0.00 0.00 3.36
2172 2260 3.499737 CGCTGCCCCGTTGTGATC 61.500 66.667 0.00 0.00 0.00 2.92
2173 2261 3.958147 CTCGCTGCCCCGTTGTGAT 62.958 63.158 0.00 0.00 0.00 3.06
2174 2262 4.680237 CTCGCTGCCCCGTTGTGA 62.680 66.667 0.00 0.00 0.00 3.58
2183 2271 3.978571 GAAACCCCTCCTCGCTGCC 62.979 68.421 0.00 0.00 0.00 4.85
2184 2272 2.436824 GAAACCCCTCCTCGCTGC 60.437 66.667 0.00 0.00 0.00 5.25
2185 2273 1.219393 GAGAAACCCCTCCTCGCTG 59.781 63.158 0.00 0.00 0.00 5.18
2186 2274 3.715015 GAGAAACCCCTCCTCGCT 58.285 61.111 0.00 0.00 0.00 4.93
2192 2280 1.219393 CTCGCTGGAGAAACCCCTC 59.781 63.158 0.00 0.00 43.27 4.30
2193 2281 2.960688 GCTCGCTGGAGAAACCCCT 61.961 63.158 0.00 0.00 43.27 4.79
2194 2282 2.436824 GCTCGCTGGAGAAACCCC 60.437 66.667 0.00 0.00 43.27 4.95
2195 2283 2.815647 CGCTCGCTGGAGAAACCC 60.816 66.667 0.00 0.00 43.27 4.11
2196 2284 2.815647 CCGCTCGCTGGAGAAACC 60.816 66.667 0.00 0.00 43.27 3.27
2197 2285 3.491652 GCCGCTCGCTGGAGAAAC 61.492 66.667 0.00 0.00 43.27 2.78
2206 2294 4.708968 CTCTATCCCGCCGCTCGC 62.709 72.222 0.00 0.00 36.73 5.03
2207 2295 4.708968 GCTCTATCCCGCCGCTCG 62.709 72.222 0.00 0.00 38.08 5.03
2208 2296 4.708968 CGCTCTATCCCGCCGCTC 62.709 72.222 0.00 0.00 0.00 5.03
2211 2299 4.344474 GTCCGCTCTATCCCGCCG 62.344 72.222 0.00 0.00 0.00 6.46
2212 2300 4.344474 CGTCCGCTCTATCCCGCC 62.344 72.222 0.00 0.00 0.00 6.13
2213 2301 4.344474 CCGTCCGCTCTATCCCGC 62.344 72.222 0.00 0.00 0.00 6.13
2214 2302 4.344474 GCCGTCCGCTCTATCCCG 62.344 72.222 0.00 0.00 0.00 5.14
2230 2318 3.672295 CTTCTCCTCCACCGCCAGC 62.672 68.421 0.00 0.00 0.00 4.85
2231 2319 2.581354 CTTCTCCTCCACCGCCAG 59.419 66.667 0.00 0.00 0.00 4.85
2232 2320 3.003173 CCTTCTCCTCCACCGCCA 61.003 66.667 0.00 0.00 0.00 5.69
2233 2321 2.683933 TCCTTCTCCTCCACCGCC 60.684 66.667 0.00 0.00 0.00 6.13
2377 2466 2.154798 CTCGACCGCTTGTTCCCTCA 62.155 60.000 0.00 0.00 0.00 3.86
2386 2475 2.756283 CTCTCCCCTCGACCGCTT 60.756 66.667 0.00 0.00 0.00 4.68
2575 2673 6.430000 TCCGCTAATTCTTTTCTGCTAAAGTT 59.570 34.615 0.00 0.00 36.67 2.66
2629 2747 4.882842 ACCCCGTGCTCAAATTATTTTT 57.117 36.364 0.00 0.00 0.00 1.94
2630 2748 4.882842 AACCCCGTGCTCAAATTATTTT 57.117 36.364 0.00 0.00 0.00 1.82
2631 2749 4.882842 AAACCCCGTGCTCAAATTATTT 57.117 36.364 0.00 0.00 0.00 1.40
2634 2752 5.986501 AAATAAACCCCGTGCTCAAATTA 57.013 34.783 0.00 0.00 0.00 1.40
2692 2816 5.517924 TCTTTCAATCATGGCCATTCCTAA 58.482 37.500 17.92 4.30 35.26 2.69
2699 2824 7.849160 TGAATTTAATCTTTCAATCATGGCCA 58.151 30.769 8.56 8.56 0.00 5.36
2763 2892 6.622427 TTTTTGGACCTTCCTTTTACCAAA 57.378 33.333 0.00 0.00 42.81 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.