AutoCloner

Multiple sequence alignment - TraesCS6A01G194700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G194700	chr6A	100.000	2282	0	0	538	2819	272560830	272558549	0.000000e+00	4215
1	TraesCS6A01G194700	chr6A	96.255	2136	78	2	685	2819	483929782	483931916	0.000000e+00	3500
2	TraesCS6A01G194700	chr6A	90.073	685	53	8	2139	2819	272441145	272441818	0.000000e+00	874
3	TraesCS6A01G194700	chr6A	89.051	685	54	11	2139	2819	478540821	478541488	0.000000e+00	830
4	TraesCS6A01G194700	chr6A	100.000	196	0	0	1	196	272561367	272561172	2.060000e-96	363
5	TraesCS6A01G194700	chr6A	91.946	149	11	1	538	686	483929666	483929813	1.020000e-49	207
6	TraesCS6A01G194700	chr2A	94.786	2014	91	8	578	2580	239897435	239895425	0.000000e+00	3125
7	TraesCS6A01G194700	chr2A	89.359	686	56	10	2139	2819	38021468	38022141	0.000000e+00	846
8	TraesCS6A01G194700	chr4D	86.880	1189	110	23	976	2142	434978238	434979402	0.000000e+00	1290
9	TraesCS6A01G194700	chr4A	86.371	1196	106	30	976	2125	36372563	36373747	0.000000e+00	1253
10	TraesCS6A01G194700	chr4B	85.750	1186	110	30	976	2131	535049551	535050707	0.000000e+00	1199
11	TraesCS6A01G194700	chr5A	89.781	685	56	7	2139	2819	649419744	649419070	0.000000e+00	865
12	TraesCS6A01G194700	chr5A	89.665	687	50	12	2139	2819	202894970	202894299	0.000000e+00	856
13	TraesCS6A01G194700	chr3A	90.000	680	53	12	2139	2816	342764709	342765375	0.000000e+00	865
14	TraesCS6A01G194700	chr7A	89.343	685	58	8	2139	2819	705108676	705108003	0.000000e+00	846
15	TraesCS6A01G194700	chr7A	80.153	655	82	27	976	1626	11755037	11755647	1.990000e-121	446
16	TraesCS6A01G194700	chr1A	86.383	470	51	11	1261	1727	432592111	432591652	4.190000e-138	501
17	TraesCS6A01G194700	chr5D	86.170	470	51	12	1261	1727	366753171	366753629	1.950000e-136	496
18	TraesCS6A01G194700	chr5D	85.745	470	54	11	1261	1727	365179781	365180240	4.220000e-133	484

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G194700	chr6A	272558549	272561367	2818	True	2289.0	4215	100.0000	1	2819	2	chr6A.!!$R1	2818
1	TraesCS6A01G194700	chr6A	483929666	483931916	2250	False	1853.5	3500	94.1005	538	2819	2	chr6A.!!$F3	2281
2	TraesCS6A01G194700	chr6A	272441145	272441818	673	False	874.0	874	90.0730	2139	2819	1	chr6A.!!$F1	680
3	TraesCS6A01G194700	chr6A	478540821	478541488	667	False	830.0	830	89.0510	2139	2819	1	chr6A.!!$F2	680
4	TraesCS6A01G194700	chr2A	239895425	239897435	2010	True	3125.0	3125	94.7860	578	2580	1	chr2A.!!$R1	2002
5	TraesCS6A01G194700	chr2A	38021468	38022141	673	False	846.0	846	89.3590	2139	2819	1	chr2A.!!$F1	680
6	TraesCS6A01G194700	chr4D	434978238	434979402	1164	False	1290.0	1290	86.8800	976	2142	1	chr4D.!!$F1	1166
7	TraesCS6A01G194700	chr4A	36372563	36373747	1184	False	1253.0	1253	86.3710	976	2125	1	chr4A.!!$F1	1149
8	TraesCS6A01G194700	chr4B	535049551	535050707	1156	False	1199.0	1199	85.7500	976	2131	1	chr4B.!!$F1	1155
9	TraesCS6A01G194700	chr5A	649419070	649419744	674	True	865.0	865	89.7810	2139	2819	1	chr5A.!!$R2	680
10	TraesCS6A01G194700	chr5A	202894299	202894970	671	True	856.0	856	89.6650	2139	2819	1	chr5A.!!$R1	680
11	TraesCS6A01G194700	chr3A	342764709	342765375	666	False	865.0	865	90.0000	2139	2816	1	chr3A.!!$F1	677
12	TraesCS6A01G194700	chr7A	705108003	705108676	673	True	846.0	846	89.3430	2139	2819	1	chr7A.!!$R1	680
13	TraesCS6A01G194700	chr7A	11755037	11755647	610	False	446.0	446	80.1530	976	1626	1	chr7A.!!$F1	650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
71	72	0.526524	CGACGGATGCTCCTGAACTC	60.527	60.0	0.0	0.0	33.3	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1821	1879	1.40834	CCTGTCAACAACATGTGCCAA	59.592	47.619	0.0	0.0	37.23	4.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	8.482852	AATCCCTGGATCCAAATAACTATTTG	57.517	34.615	17.00	13.13	41.49	2.32
40	41	9.512588	AATAACTATTTGGATCATGATCAGTCC	57.487	33.333	31.49	19.60	39.54	3.85
41	42	6.760440	ACTATTTGGATCATGATCAGTCCT	57.240	37.500	31.49	16.69	39.54	3.85
42	43	7.862274	ACTATTTGGATCATGATCAGTCCTA	57.138	36.000	31.49	14.21	39.54	2.94
43	44	7.675062	ACTATTTGGATCATGATCAGTCCTAC	58.325	38.462	31.49	16.04	39.54	3.18
44	45	5.955961	TTTGGATCATGATCAGTCCTACA	57.044	39.130	31.49	18.14	39.54	2.74
45	46	6.505048	TTTGGATCATGATCAGTCCTACAT	57.495	37.500	31.49	0.00	39.54	2.29
46	47	7.616528	TTTGGATCATGATCAGTCCTACATA	57.383	36.000	31.49	14.05	39.54	2.29
47	48	6.847421	TGGATCATGATCAGTCCTACATAG	57.153	41.667	31.49	0.00	39.54	2.23
48	49	5.718607	TGGATCATGATCAGTCCTACATAGG	59.281	44.000	31.49	0.00	40.91	2.57
49	50	5.954752	GGATCATGATCAGTCCTACATAGGA	59.045	44.000	31.49	3.36	43.40	2.94
50	51	6.096705	GGATCATGATCAGTCCTACATAGGAG	59.903	46.154	31.49	0.00	44.74	3.69
51	52	6.096705	GATCATGATCAGTCCTACATAGGAGG	59.903	46.154	27.30	4.34	43.63	4.30
52	53	9.244283	GATCATGATCAGTCCTACATAGGAGGC	62.244	48.148	27.30	0.00	43.63	4.70
57	58	1.957562	CCTACATAGGAGGCGACGG	59.042	63.158	0.00	0.00	46.63	4.79
58	59	0.536687	CCTACATAGGAGGCGACGGA	60.537	60.000	0.00	0.00	46.63	4.69
59	60	1.535833	CTACATAGGAGGCGACGGAT	58.464	55.000	0.00	0.00	0.00	4.18
60	61	1.200252	CTACATAGGAGGCGACGGATG	59.800	57.143	0.00	0.00	0.00	3.51
61	62	1.373497	CATAGGAGGCGACGGATGC	60.373	63.158	0.00	0.00	0.00	3.91
62	63	1.531840	ATAGGAGGCGACGGATGCT	60.532	57.895	0.00	0.00	0.00	3.79
63	64	1.528292	ATAGGAGGCGACGGATGCTC	61.528	60.000	0.00	0.00	0.00	4.26
64	65	4.593864	GGAGGCGACGGATGCTCC	62.594	72.222	0.00	0.00	0.00	4.70
65	66	3.532155	GAGGCGACGGATGCTCCT	61.532	66.667	0.00	0.00	33.30	3.69
66	67	3.781770	GAGGCGACGGATGCTCCTG	62.782	68.421	0.00	0.00	33.30	3.86
67	68	3.838271	GGCGACGGATGCTCCTGA	61.838	66.667	0.00	0.00	33.30	3.86
68	69	2.184322	GCGACGGATGCTCCTGAA	59.816	61.111	0.00	0.00	33.30	3.02
69	70	2.167861	GCGACGGATGCTCCTGAAC	61.168	63.158	0.00	0.00	33.30	3.18
70	71	1.513158	CGACGGATGCTCCTGAACT	59.487	57.895	0.00	0.00	33.30	3.01
71	72	0.526524	CGACGGATGCTCCTGAACTC	60.527	60.000	0.00	0.00	33.30	3.01
72	73	0.532573	GACGGATGCTCCTGAACTCA	59.467	55.000	0.00	0.00	33.30	3.41
73	74	0.976641	ACGGATGCTCCTGAACTCAA	59.023	50.000	0.00	0.00	33.30	3.02
74	75	1.347707	ACGGATGCTCCTGAACTCAAA	59.652	47.619	0.00	0.00	33.30	2.69
75	76	2.224523	ACGGATGCTCCTGAACTCAAAA	60.225	45.455	0.00	0.00	33.30	2.44
76	77	2.813754	CGGATGCTCCTGAACTCAAAAA	59.186	45.455	1.51	0.00	33.30	1.94
93	94	3.220658	AAAAACCACCCACCCGCG	61.221	61.111	0.00	0.00	0.00	6.46
94	95	4.509580	AAAACCACCCACCCGCGT	62.510	61.111	4.92	0.00	0.00	6.01
95	96	4.941309	AAACCACCCACCCGCGTC	62.941	66.667	4.92	0.00	0.00	5.19
135	136	4.041762	GGCGATTCCCACCACCCA	62.042	66.667	0.00	0.00	0.00	4.51
136	137	2.750237	GCGATTCCCACCACCCAC	60.750	66.667	0.00	0.00	0.00	4.61
137	138	2.045340	CGATTCCCACCACCCACC	60.045	66.667	0.00	0.00	0.00	4.61
138	139	2.359011	GATTCCCACCACCCACCC	59.641	66.667	0.00	0.00	0.00	4.61
139	140	3.272847	ATTCCCACCACCCACCCC	61.273	66.667	0.00	0.00	0.00	4.95
144	145	4.636435	CACCACCCACCCCGTGTC	62.636	72.222	0.00	0.00	0.00	3.67
147	148	4.675029	CACCCACCCCGTGTCGTC	62.675	72.222	0.00	0.00	0.00	4.20
169	170	4.452733	CTCACCCCCGGCGAACTC	62.453	72.222	9.30	0.00	0.00	3.01
180	181	3.839432	CGAACTCCCCGCCTCCTC	61.839	72.222	0.00	0.00	0.00	3.71
181	182	3.471806	GAACTCCCCGCCTCCTCC	61.472	72.222	0.00	0.00	0.00	4.30
555	556	2.892425	CGGCGACCTTCCATCTGC	60.892	66.667	0.00	0.00	0.00	4.26
621	622	4.731853	TGGATCTGACCCCCGGCA	62.732	66.667	0.00	0.00	0.00	5.69
776	777	1.674221	GCGTGACATTTCCTCTGCTCT	60.674	52.381	0.00	0.00	0.00	4.09
800	801	0.748729	CGAGCTTCCCTCTAGTCCGT	60.749	60.000	0.00	0.00	38.49	4.69
870	871	0.906756	CTCCTGCTCCTCCTCCACAA	60.907	60.000	0.00	0.00	0.00	3.33
890	891	2.074948	CCCATCCTCACCCTCCCTG	61.075	68.421	0.00	0.00	0.00	4.45
984	985	4.895297	CCTCCAATAACCAACATATGCCTT	59.105	41.667	1.58	0.00	0.00	4.35
1104	1123	9.445878	CTGAATCATACATGCATTATAGTTCCT	57.554	33.333	0.00	0.00	0.00	3.36
1121	1140	3.845781	TCCTGCAGTTCTCTGACTTTT	57.154	42.857	13.81	0.00	43.76	2.27
1209	1230	2.203998	CAGGTGGAGGGTCTGGGT	60.204	66.667	0.00	0.00	0.00	4.51
1210	1231	1.847968	CAGGTGGAGGGTCTGGGTT	60.848	63.158	0.00	0.00	0.00	4.11
1305	1326	4.923871	GTCATACGCATCGATACATCCTTT	59.076	41.667	0.00	0.00	0.00	3.11
1458	1480	0.919710	GGGTAAGGGCAGAAGTGGAT	59.080	55.000	0.00	0.00	0.00	3.41
1670	1699	2.930562	AAGGAGCTGGCGTCCCTT	60.931	61.111	0.00	0.00	34.21	3.95
1680	1709	1.220749	GCGTCCCTTGGCATACAGA	59.779	57.895	0.00	0.00	0.00	3.41
1829	1887	4.025040	TCAGAAGATGAAGTTGGCACAT	57.975	40.909	0.00	0.00	33.76	3.21
1896	1955	1.849039	AGCAGTGGAAGGATGCCTAAT	59.151	47.619	0.00	0.00	40.89	1.73
1935	1994	4.222810	TGCTATGGAGTGTTGAGTGTATGT	59.777	41.667	0.00	0.00	0.00	2.29
2006	2066	1.019673	ACATAGCTCCGCAAATGCTG	58.980	50.000	3.63	0.00	37.62	4.41
2060	2121	8.821147	AAACATGTACGTGTTCTGTAGAAATA	57.179	30.769	28.83	0.00	41.22	1.40
2317	2385	8.582437	CCAAAGGTTTGCATATATTCAGATGAT	58.418	33.333	0.00	0.00	36.86	2.45
2333	2401	4.005650	AGATGATAGGTTGCACACACAAG	58.994	43.478	0.00	0.00	0.00	3.16
2341	2409	3.181476	GGTTGCACACACAAGAAGGAAAT	60.181	43.478	0.00	0.00	0.00	2.17
2599	2667	1.954146	CACACCCACAACTCCGTCG	60.954	63.158	0.00	0.00	0.00	5.12
2765	2833	6.581171	AGAAAATTCAATGTTCAGAGGGAC	57.419	37.500	3.03	0.00	0.00	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.482852	CAAATAGTTATTTGGATCCAGGGATT	57.517	34.615	15.53	6.43	45.35	3.01
14	15	9.512588	GGACTGATCATGATCCAAATAGTTATT	57.487	33.333	28.61	6.84	37.02	1.40
15	16	8.888419	AGGACTGATCATGATCCAAATAGTTAT	58.112	33.333	28.61	15.50	37.02	1.89
16	17	8.267620	AGGACTGATCATGATCCAAATAGTTA	57.732	34.615	28.61	9.34	37.02	2.24
17	18	7.146715	AGGACTGATCATGATCCAAATAGTT	57.853	36.000	28.61	11.10	37.02	2.24
18	19	6.760440	AGGACTGATCATGATCCAAATAGT	57.240	37.500	28.61	23.97	37.02	2.12
19	20	7.674120	TGTAGGACTGATCATGATCCAAATAG	58.326	38.462	28.61	21.37	37.02	1.73
20	21	7.616528	TGTAGGACTGATCATGATCCAAATA	57.383	36.000	28.61	14.46	37.02	1.40
21	22	6.505048	TGTAGGACTGATCATGATCCAAAT	57.495	37.500	28.61	13.92	37.02	2.32
22	23	5.955961	TGTAGGACTGATCATGATCCAAA	57.044	39.130	28.61	12.66	37.02	3.28
23	24	6.212187	CCTATGTAGGACTGATCATGATCCAA	59.788	42.308	28.61	13.33	46.63	3.53
24	25	5.718607	CCTATGTAGGACTGATCATGATCCA	59.281	44.000	28.61	18.78	46.63	3.41
25	26	6.219417	CCTATGTAGGACTGATCATGATCC	57.781	45.833	28.61	17.49	46.63	3.36
39	40	0.536687	TCCGTCGCCTCCTATGTAGG	60.537	60.000	0.00	0.00	45.02	3.18
40	41	1.200252	CATCCGTCGCCTCCTATGTAG	59.800	57.143	0.00	0.00	0.00	2.74
41	42	1.244816	CATCCGTCGCCTCCTATGTA	58.755	55.000	0.00	0.00	0.00	2.29
42	43	2.041976	CATCCGTCGCCTCCTATGT	58.958	57.895	0.00	0.00	0.00	2.29
43	44	1.373497	GCATCCGTCGCCTCCTATG	60.373	63.158	0.00	0.00	0.00	2.23
44	45	1.528292	GAGCATCCGTCGCCTCCTAT	61.528	60.000	0.00	0.00	0.00	2.57
45	46	2.123854	AGCATCCGTCGCCTCCTA	60.124	61.111	0.00	0.00	0.00	2.94
46	47	3.532155	GAGCATCCGTCGCCTCCT	61.532	66.667	0.00	0.00	0.00	3.69
76	77	3.220658	CGCGGGTGGGTGGTTTTT	61.221	61.111	0.00	0.00	0.00	1.94
77	78	4.509580	ACGCGGGTGGGTGGTTTT	62.510	61.111	12.47	0.00	40.17	2.43
78	79	4.941309	GACGCGGGTGGGTGGTTT	62.941	66.667	10.96	0.00	41.99	3.27
118	119	4.041762	TGGGTGGTGGGAATCGCC	62.042	66.667	0.00	0.00	46.03	5.54
119	120	2.750237	GTGGGTGGTGGGAATCGC	60.750	66.667	0.00	0.00	0.00	4.58
120	121	2.045340	GGTGGGTGGTGGGAATCG	60.045	66.667	0.00	0.00	0.00	3.34
121	122	2.359011	GGGTGGGTGGTGGGAATC	59.641	66.667	0.00	0.00	0.00	2.52
122	123	3.272847	GGGGTGGGTGGTGGGAAT	61.273	66.667	0.00	0.00	0.00	3.01
127	128	4.636435	GACACGGGGTGGGTGGTG	62.636	72.222	0.00	0.00	39.69	4.17
130	131	4.675029	GACGACACGGGGTGGGTG	62.675	72.222	0.00	0.00	37.94	4.61
152	153	4.452733	GAGTTCGCCGGGGGTGAG	62.453	72.222	19.63	0.00	43.44	3.51
163	164	3.839432	GAGGAGGCGGGGAGTTCG	61.839	72.222	0.00	0.00	0.00	3.95
164	165	3.471806	GGAGGAGGCGGGGAGTTC	61.472	72.222	0.00	0.00	0.00	3.01
537	538	2.202932	CAGATGGAAGGTCGCCGG	60.203	66.667	0.00	0.00	0.00	6.13
538	539	2.892425	GCAGATGGAAGGTCGCCG	60.892	66.667	0.00	0.00	0.00	6.46
539	540	2.892425	CGCAGATGGAAGGTCGCC	60.892	66.667	0.00	0.00	0.00	5.54
540	541	3.567797	GCGCAGATGGAAGGTCGC	61.568	66.667	0.30	0.00	35.82	5.19
541	542	2.169789	CAGCGCAGATGGAAGGTCG	61.170	63.158	11.47	0.00	42.04	4.79
576	577	3.790437	CTGTGCAGGGCCGGATCT	61.790	66.667	5.05	0.00	0.00	2.75
621	622	4.651516	ACCTAGGCGTGGGGTGGT	62.652	66.667	9.30	0.00	31.48	4.16
708	709	4.101448	GGTCAGGGGATGCAGCGT	62.101	66.667	0.00	0.00	0.00	5.07
750	751	2.032634	GGAAATGTCACGCCGCAGA	61.033	57.895	0.00	0.00	0.00	4.26
776	777	1.304962	TAGAGGGAAGCTCGTGCCA	60.305	57.895	5.73	0.00	40.80	4.92
800	801	1.827399	GAGTTGAGGGAAGGCCGTGA	61.827	60.000	0.00	0.00	33.83	4.35
870	871	2.042930	GGAGGGTGAGGATGGGGT	59.957	66.667	0.00	0.00	0.00	4.95
890	891	1.674651	GGAGGAAGTTGTTCGGGGC	60.675	63.158	0.00	0.00	32.92	5.80
1140	1159	3.803186	AAGGATATGGCTAGCTGCAAT	57.197	42.857	15.72	6.36	45.15	3.56
1149	1170	4.539726	TGATCTTTGCAAAGGATATGGCT	58.460	39.130	33.01	12.03	43.24	4.75
1189	1210	2.664081	CCAGACCCTCCACCTGAGC	61.664	68.421	0.00	0.00	39.98	4.26
1209	1230	6.719370	AGAATATGTTTGTTCCTTGTAGCCAA	59.281	34.615	0.00	0.00	0.00	4.52
1210	1231	6.150976	CAGAATATGTTTGTTCCTTGTAGCCA	59.849	38.462	0.00	0.00	0.00	4.75
1271	1292	1.447838	CGTATGACTTGCACGGCCT	60.448	57.895	0.00	0.00	32.19	5.19
1305	1326	4.991153	AGTCGCATTGATGAAGTAGAGA	57.009	40.909	0.00	0.00	0.00	3.10
1458	1480	3.455910	CCCTGACCTTCTCATTGGATGTA	59.544	47.826	0.00	0.00	0.00	2.29
1670	1699	6.539826	CAGTAAATCACTTCATCTGTATGCCA	59.460	38.462	0.00	0.00	34.26	4.92
1680	1709	7.052248	TGATGCTCATCAGTAAATCACTTCAT	58.948	34.615	8.37	0.00	42.42	2.57
1821	1879	1.408340	CCTGTCAACAACATGTGCCAA	59.592	47.619	0.00	0.00	37.23	4.52
1829	1887	4.838423	TCTTCTCCTATCCTGTCAACAACA	59.162	41.667	0.00	0.00	36.18	3.33
1896	1955	3.524014	CACTGCCCTTGTGTGCAA	58.476	55.556	0.00	0.00	36.98	4.08
1961	2020	5.292765	ACCATGCTCACTAGATACAAATCG	58.707	41.667	0.00	0.00	37.19	3.34
2006	2066	5.585500	TGTTGCGTCTGTTACTATTTGTC	57.415	39.130	0.00	0.00	0.00	3.18
2060	2121	7.705325	CGTATACCACTCTAGTTAATGTGCTTT	59.295	37.037	0.00	0.00	0.00	3.51
2223	2291	1.758936	TCACCGAGAGCGAAAGGATA	58.241	50.000	0.00	0.00	40.82	2.59
2307	2375	4.637534	GTGTGTGCAACCTATCATCTGAAT	59.362	41.667	0.00	0.00	34.36	2.57
2317	2385	2.171659	TCCTTCTTGTGTGTGCAACCTA	59.828	45.455	0.00	0.00	34.36	3.08
2333	2401	8.753497	AATGTCTAGACCCAAATATTTCCTTC	57.247	34.615	20.11	0.00	0.00	3.46
2341	2409	7.016153	AGTGTCAAATGTCTAGACCCAAATA	57.984	36.000	20.11	0.34	0.00	1.40
2486	2554	6.015180	ACAAATTCTATTGCTGGTGTTGTGAT	60.015	34.615	0.00	0.00	33.52	3.06
2563	2631	1.264045	TGAGTCACATCCCATCGGCA	61.264	55.000	0.00	0.00	0.00	5.69
2683	2751	9.744468	AAAGAAAATTACACACAAGAATACACC	57.256	29.630	0.00	0.00	0.00	4.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.