Multiple sequence alignment - TraesCS6A01G193600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G193600 chr6A 100.000 3389 0 0 1 3389 270458995 270462383 0.000000e+00 6259
1 TraesCS6A01G193600 chr7D 83.105 2048 279 38 730 2754 236775715 236773712 0.000000e+00 1803
2 TraesCS6A01G193600 chr7D 86.818 440 52 4 21 455 236776741 236776303 1.410000e-133 486
3 TraesCS6A01G193600 chr4B 98.878 624 6 1 2766 3389 115553376 115552754 0.000000e+00 1112
4 TraesCS6A01G193600 chr7B 97.448 627 13 3 2765 3389 293073126 293073751 0.000000e+00 1066
5 TraesCS6A01G193600 chr5B 97.289 627 14 3 2765 3389 58627628 58628253 0.000000e+00 1061
6 TraesCS6A01G193600 chr5B 97.276 624 14 3 2768 3389 185510722 185510100 0.000000e+00 1055
7 TraesCS6A01G193600 chr5B 97.120 625 17 1 2766 3389 532348983 532348359 0.000000e+00 1053
8 TraesCS6A01G193600 chr5B 96.955 624 15 4 2768 3389 317070492 317069871 0.000000e+00 1044
9 TraesCS6A01G193600 chr3B 97.289 627 14 3 2765 3389 771388645 771389270 0.000000e+00 1061
10 TraesCS6A01G193600 chr2B 96.970 627 16 3 2765 3389 529817219 529817844 0.000000e+00 1050
11 TraesCS6A01G193600 chr1A 96.955 624 16 3 2768 3389 586360666 586360044 0.000000e+00 1044
12 TraesCS6A01G193600 chr2D 76.963 1732 314 61 1075 2755 137029993 137031690 0.000000e+00 909
13 TraesCS6A01G193600 chr7A 76.785 1723 318 54 1075 2755 616930048 616928366 0.000000e+00 891


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G193600 chr6A 270458995 270462383 3388 False 6259.0 6259 100.0000 1 3389 1 chr6A.!!$F1 3388
1 TraesCS6A01G193600 chr7D 236773712 236776741 3029 True 1144.5 1803 84.9615 21 2754 2 chr7D.!!$R1 2733
2 TraesCS6A01G193600 chr4B 115552754 115553376 622 True 1112.0 1112 98.8780 2766 3389 1 chr4B.!!$R1 623
3 TraesCS6A01G193600 chr7B 293073126 293073751 625 False 1066.0 1066 97.4480 2765 3389 1 chr7B.!!$F1 624
4 TraesCS6A01G193600 chr5B 58627628 58628253 625 False 1061.0 1061 97.2890 2765 3389 1 chr5B.!!$F1 624
5 TraesCS6A01G193600 chr5B 185510100 185510722 622 True 1055.0 1055 97.2760 2768 3389 1 chr5B.!!$R1 621
6 TraesCS6A01G193600 chr5B 532348359 532348983 624 True 1053.0 1053 97.1200 2766 3389 1 chr5B.!!$R3 623
7 TraesCS6A01G193600 chr5B 317069871 317070492 621 True 1044.0 1044 96.9550 2768 3389 1 chr5B.!!$R2 621
8 TraesCS6A01G193600 chr3B 771388645 771389270 625 False 1061.0 1061 97.2890 2765 3389 1 chr3B.!!$F1 624
9 TraesCS6A01G193600 chr2B 529817219 529817844 625 False 1050.0 1050 96.9700 2765 3389 1 chr2B.!!$F1 624
10 TraesCS6A01G193600 chr1A 586360044 586360666 622 True 1044.0 1044 96.9550 2768 3389 1 chr1A.!!$R1 621
11 TraesCS6A01G193600 chr2D 137029993 137031690 1697 False 909.0 909 76.9630 1075 2755 1 chr2D.!!$F1 1680
12 TraesCS6A01G193600 chr7A 616928366 616930048 1682 True 891.0 891 76.7850 1075 2755 1 chr7A.!!$R1 1680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 662 0.037882 GCAAAGCAGAGGGGAAAAGC 60.038 55.0 0.00 0.0 0.00 3.51 F
1440 1794 0.031414 TAAGAGAGGGGCCTACCACC 60.031 60.0 0.84 0.0 42.21 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2518 0.108804 CCGTTCGCTTCTGCCTCTTA 60.109 55.0 0.00 0.0 35.36 2.10 R
2684 3075 1.340088 TGGCATGTGCTTTCCAACAT 58.660 45.0 4.84 0.0 41.70 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.509970 TGTTGTTTCTCCATGTCTGTAACG 59.490 41.667 0.00 0.00 0.00 3.18
36 37 3.313012 TCTCCATGTCTGTAACGTTGG 57.687 47.619 11.99 1.06 35.89 3.77
39 40 2.631062 TCCATGTCTGTAACGTTGGTCT 59.369 45.455 11.99 0.00 35.97 3.85
40 41 3.070446 TCCATGTCTGTAACGTTGGTCTT 59.930 43.478 11.99 0.00 35.97 3.01
47 48 2.796031 TGTAACGTTGGTCTTACAAGCG 59.204 45.455 11.99 0.00 31.39 4.68
54 55 2.241160 TGGTCTTACAAGCGTGGTAGA 58.759 47.619 4.26 3.35 0.00 2.59
61 66 3.120321 ACAAGCGTGGTAGATGTCAAA 57.880 42.857 4.26 0.00 0.00 2.69
79 84 9.914923 GATGTCAAACTTTTCAAAATTGTTACC 57.085 29.630 0.00 0.00 0.00 2.85
97 102 3.116091 CAAGGCAGTTGGGAAGTGT 57.884 52.632 0.00 0.00 34.28 3.55
112 117 3.763897 GGAAGTGTAGGCATGGTCAAAAT 59.236 43.478 0.00 0.00 0.00 1.82
114 119 3.091545 AGTGTAGGCATGGTCAAAATGG 58.908 45.455 0.00 0.00 0.00 3.16
127 132 6.484288 TGGTCAAAATGGAGATGTACTGAAT 58.516 36.000 0.00 0.00 0.00 2.57
139 144 6.987386 AGATGTACTGAATATCCTGTAGCAC 58.013 40.000 0.00 0.00 0.00 4.40
145 150 2.515926 ATATCCTGTAGCACACGCAG 57.484 50.000 0.00 0.00 42.27 5.18
159 164 1.662629 CACGCAGCAAGATTCAGTAGG 59.337 52.381 0.00 0.00 0.00 3.18
163 168 2.983229 CAGCAAGATTCAGTAGGCTGT 58.017 47.619 0.00 0.00 42.69 4.40
164 169 4.128925 CAGCAAGATTCAGTAGGCTGTA 57.871 45.455 0.00 0.00 42.69 2.74
167 172 5.007430 CAGCAAGATTCAGTAGGCTGTATTG 59.993 44.000 0.00 0.00 42.69 1.90
177 182 4.572389 AGTAGGCTGTATTGCAAAATCTCG 59.428 41.667 1.71 0.00 34.04 4.04
178 183 3.609853 AGGCTGTATTGCAAAATCTCGA 58.390 40.909 1.71 0.00 34.04 4.04
180 185 4.274459 AGGCTGTATTGCAAAATCTCGATC 59.726 41.667 1.71 0.00 34.04 3.69
181 186 4.035558 GGCTGTATTGCAAAATCTCGATCA 59.964 41.667 1.71 0.00 34.04 2.92
182 187 4.966366 GCTGTATTGCAAAATCTCGATCAC 59.034 41.667 1.71 0.00 0.00 3.06
184 189 6.018751 GCTGTATTGCAAAATCTCGATCACTA 60.019 38.462 1.71 0.00 0.00 2.74
192 197 7.119699 TGCAAAATCTCGATCACTACTGAAATT 59.880 33.333 0.00 0.00 0.00 1.82
207 212 2.682856 TGAAATTGCTTCATACGAGGCC 59.317 45.455 0.00 0.00 43.38 5.19
213 218 2.037251 TGCTTCATACGAGGCCCTATTC 59.963 50.000 0.00 0.00 43.38 1.75
226 231 2.872732 CCCTATTCGTAGGCTGGTAGA 58.127 52.381 0.00 0.00 35.90 2.59
233 238 5.927281 TTCGTAGGCTGGTAGACTTTAAT 57.073 39.130 0.00 0.00 33.88 1.40
240 245 4.802563 GGCTGGTAGACTTTAATGTACGTC 59.197 45.833 0.00 0.00 0.00 4.34
242 247 5.622914 GCTGGTAGACTTTAATGTACGTCCA 60.623 44.000 0.00 0.00 0.00 4.02
245 250 4.467198 AGACTTTAATGTACGTCCAGGG 57.533 45.455 0.00 0.00 0.00 4.45
254 259 1.546589 TACGTCCAGGGGCGTTTGAT 61.547 55.000 23.96 0.00 41.77 2.57
263 268 0.168128 GGGCGTTTGATCCGTTTCTG 59.832 55.000 0.00 0.00 0.00 3.02
274 279 1.008995 CGTTTCTGGGTGCGTTTGG 60.009 57.895 0.00 0.00 0.00 3.28
305 310 1.271446 CTGCCGCAGACGATATCACG 61.271 60.000 15.74 0.00 43.93 4.35
306 311 2.649257 GCCGCAGACGATATCACGC 61.649 63.158 3.12 0.00 43.93 5.34
307 312 1.299089 CCGCAGACGATATCACGCA 60.299 57.895 3.12 0.00 43.93 5.24
310 315 1.333791 CGCAGACGATATCACGCAGTA 60.334 52.381 3.12 0.00 40.36 2.74
345 350 4.217118 CCTGCTGACACAAAATTTAGAGCT 59.783 41.667 0.00 0.00 0.00 4.09
348 353 4.919754 GCTGACACAAAATTTAGAGCTTGG 59.080 41.667 0.00 0.00 0.00 3.61
349 354 5.507985 GCTGACACAAAATTTAGAGCTTGGT 60.508 40.000 0.00 0.00 0.00 3.67
370 375 7.004555 TGGTTAAATTGTCAGCTCTTCTCTA 57.995 36.000 0.00 0.00 0.00 2.43
375 380 7.667575 AAATTGTCAGCTCTTCTCTATCCTA 57.332 36.000 0.00 0.00 0.00 2.94
381 386 4.022935 CAGCTCTTCTCTATCCTACAGCTG 60.023 50.000 13.48 13.48 44.76 4.24
422 428 8.943909 ACTACAGATAAAAGGTACAATACTGC 57.056 34.615 0.00 0.00 0.00 4.40
428 434 2.465860 AGGTACAATACTGCACGCAA 57.534 45.000 0.00 0.00 0.00 4.85
434 440 1.061711 CAATACTGCACGCAAGAGAGC 59.938 52.381 0.00 0.00 43.62 4.09
444 450 1.424240 CAAGAGAGCTGTGCATGCG 59.576 57.895 14.09 0.00 35.28 4.73
448 454 2.435586 GAGCTGTGCATGCGTCCT 60.436 61.111 14.09 6.44 35.28 3.85
455 461 0.652592 GTGCATGCGTCCTCATACAC 59.347 55.000 14.09 0.00 34.67 2.90
456 462 0.248843 TGCATGCGTCCTCATACACA 59.751 50.000 14.09 0.00 0.00 3.72
457 463 1.134431 TGCATGCGTCCTCATACACAT 60.134 47.619 14.09 0.00 0.00 3.21
458 464 1.942657 GCATGCGTCCTCATACACATT 59.057 47.619 0.00 0.00 0.00 2.71
460 466 3.181497 GCATGCGTCCTCATACACATTTT 60.181 43.478 0.00 0.00 0.00 1.82
461 467 4.591202 CATGCGTCCTCATACACATTTTC 58.409 43.478 0.00 0.00 0.00 2.29
462 468 3.006940 TGCGTCCTCATACACATTTTCC 58.993 45.455 0.00 0.00 0.00 3.13
463 469 3.270877 GCGTCCTCATACACATTTTCCT 58.729 45.455 0.00 0.00 0.00 3.36
464 470 3.063997 GCGTCCTCATACACATTTTCCTG 59.936 47.826 0.00 0.00 0.00 3.86
465 471 3.623060 CGTCCTCATACACATTTTCCTGG 59.377 47.826 0.00 0.00 0.00 4.45
466 472 3.378427 GTCCTCATACACATTTTCCTGGC 59.622 47.826 0.00 0.00 0.00 4.85
467 473 2.689983 CCTCATACACATTTTCCTGGCC 59.310 50.000 0.00 0.00 0.00 5.36
468 474 3.355378 CTCATACACATTTTCCTGGCCA 58.645 45.455 4.71 4.71 0.00 5.36
469 475 3.763360 CTCATACACATTTTCCTGGCCAA 59.237 43.478 7.01 0.00 0.00 4.52
470 476 4.352009 TCATACACATTTTCCTGGCCAAT 58.648 39.130 7.01 0.00 0.00 3.16
471 477 4.160065 TCATACACATTTTCCTGGCCAATG 59.840 41.667 7.01 10.07 34.60 2.82
472 478 1.624813 ACACATTTTCCTGGCCAATGG 59.375 47.619 16.76 11.51 33.00 3.16
473 479 1.624813 CACATTTTCCTGGCCAATGGT 59.375 47.619 16.76 2.37 33.00 3.55
474 480 2.830923 CACATTTTCCTGGCCAATGGTA 59.169 45.455 16.76 3.03 33.00 3.25
475 481 2.831526 ACATTTTCCTGGCCAATGGTAC 59.168 45.455 16.76 0.00 33.00 3.34
490 496 3.260475 TGGTACACACCTACATGCATC 57.740 47.619 0.00 0.00 45.98 3.91
491 497 2.837591 TGGTACACACCTACATGCATCT 59.162 45.455 0.00 0.00 45.98 2.90
492 498 4.027437 TGGTACACACCTACATGCATCTA 58.973 43.478 0.00 0.00 45.98 1.98
493 499 4.099419 TGGTACACACCTACATGCATCTAG 59.901 45.833 0.00 0.00 45.98 2.43
494 500 3.185246 ACACACCTACATGCATCTAGC 57.815 47.619 0.00 0.00 45.96 3.42
495 501 2.768527 ACACACCTACATGCATCTAGCT 59.231 45.455 0.00 0.00 45.94 3.32
496 502 3.129109 CACACCTACATGCATCTAGCTG 58.871 50.000 0.00 0.00 45.94 4.24
497 503 2.103771 ACACCTACATGCATCTAGCTGG 59.896 50.000 0.00 0.00 45.94 4.85
498 504 2.103771 CACCTACATGCATCTAGCTGGT 59.896 50.000 0.00 0.00 45.94 4.00
499 505 2.774234 ACCTACATGCATCTAGCTGGTT 59.226 45.455 0.00 0.00 45.94 3.67
500 506 3.136763 CCTACATGCATCTAGCTGGTTG 58.863 50.000 0.00 0.00 45.94 3.77
501 507 2.048444 ACATGCATCTAGCTGGTTGG 57.952 50.000 9.84 0.00 45.94 3.77
524 530 2.299326 AAAGAGATTTGCAGCCCTGT 57.701 45.000 0.00 0.00 0.00 4.00
525 531 2.299326 AAGAGATTTGCAGCCCTGTT 57.701 45.000 0.00 0.00 0.00 3.16
554 560 2.866156 CACGCCATGATTCATACGAGTT 59.134 45.455 21.36 3.70 0.00 3.01
561 567 6.368791 GCCATGATTCATACGAGTTAATAGCA 59.631 38.462 0.00 0.00 0.00 3.49
562 568 7.412346 GCCATGATTCATACGAGTTAATAGCAG 60.412 40.741 0.00 0.00 0.00 4.24
563 569 7.063898 CCATGATTCATACGAGTTAATAGCAGG 59.936 40.741 0.00 0.00 0.00 4.85
568 574 2.493713 CGAGTTAATAGCAGGCTCGT 57.506 50.000 0.00 0.00 42.54 4.18
569 575 2.810650 CGAGTTAATAGCAGGCTCGTT 58.189 47.619 0.00 0.00 42.54 3.85
570 576 3.187700 CGAGTTAATAGCAGGCTCGTTT 58.812 45.455 0.00 0.00 42.54 3.60
571 577 3.000322 CGAGTTAATAGCAGGCTCGTTTG 60.000 47.826 0.00 0.00 42.54 2.93
576 582 0.246635 TAGCAGGCTCGTTTGGTCTC 59.753 55.000 0.00 0.00 0.00 3.36
577 583 2.035442 GCAGGCTCGTTTGGTCTCC 61.035 63.158 0.00 0.00 0.00 3.71
578 584 1.738099 CAGGCTCGTTTGGTCTCCG 60.738 63.158 0.00 0.00 0.00 4.63
583 589 0.600255 CTCGTTTGGTCTCCGTTGCT 60.600 55.000 0.00 0.00 0.00 3.91
590 596 0.824759 GGTCTCCGTTGCTACTGGAT 59.175 55.000 10.88 0.00 0.00 3.41
594 600 0.175760 TCCGTTGCTACTGGATGAGC 59.824 55.000 7.52 0.00 39.25 4.26
609 615 3.305676 GGATGAGCTCGCTCTAAATAGCA 60.306 47.826 18.63 0.00 42.91 3.49
610 616 3.085443 TGAGCTCGCTCTAAATAGCAC 57.915 47.619 18.63 0.00 42.91 4.40
614 620 3.131223 AGCTCGCTCTAAATAGCACTTCA 59.869 43.478 0.00 0.00 42.91 3.02
619 625 3.307242 GCTCTAAATAGCACTTCACCACG 59.693 47.826 0.00 0.00 42.30 4.94
621 627 5.142061 TCTAAATAGCACTTCACCACGAA 57.858 39.130 0.00 0.00 0.00 3.85
623 629 4.749245 AAATAGCACTTCACCACGAAAG 57.251 40.909 0.00 0.00 31.71 2.62
627 633 1.527311 GCACTTCACCACGAAAGAGAC 59.473 52.381 0.00 0.00 31.71 3.36
629 635 0.784778 CTTCACCACGAAAGAGACGC 59.215 55.000 0.00 0.00 31.71 5.19
631 637 1.371267 CACCACGAAAGAGACGCGA 60.371 57.895 15.93 0.00 0.00 5.87
651 657 2.034687 GCAGCAAAGCAGAGGGGA 59.965 61.111 0.00 0.00 0.00 4.81
652 658 1.604593 GCAGCAAAGCAGAGGGGAA 60.605 57.895 0.00 0.00 0.00 3.97
656 662 0.037882 GCAAAGCAGAGGGGAAAAGC 60.038 55.000 0.00 0.00 0.00 3.51
659 665 1.916506 AAGCAGAGGGGAAAAGCTTC 58.083 50.000 0.00 0.00 41.27 3.86
665 671 3.998156 GGGAAAAGCTTCGGTCCC 58.002 61.111 21.02 21.02 42.98 4.46
667 673 0.251209 GGGAAAAGCTTCGGTCCCTT 60.251 55.000 25.33 6.33 45.50 3.95
668 674 1.166129 GGAAAAGCTTCGGTCCCTTC 58.834 55.000 0.00 0.00 31.77 3.46
670 676 2.505405 GAAAAGCTTCGGTCCCTTCTT 58.495 47.619 0.00 0.00 0.00 2.52
683 689 2.114506 TCCCTTCTTCTTCCTCCTCCTT 59.885 50.000 0.00 0.00 0.00 3.36
684 690 2.503765 CCCTTCTTCTTCCTCCTCCTTC 59.496 54.545 0.00 0.00 0.00 3.46
687 693 4.352893 CTTCTTCTTCCTCCTCCTTCTCT 58.647 47.826 0.00 0.00 0.00 3.10
690 696 4.775253 TCTTCTTCCTCCTCCTTCTCTTTC 59.225 45.833 0.00 0.00 0.00 2.62
691 697 4.412060 TCTTCCTCCTCCTTCTCTTTCT 57.588 45.455 0.00 0.00 0.00 2.52
692 698 5.538082 TCTTCCTCCTCCTTCTCTTTCTA 57.462 43.478 0.00 0.00 0.00 2.10
693 699 5.515106 TCTTCCTCCTCCTTCTCTTTCTAG 58.485 45.833 0.00 0.00 0.00 2.43
695 701 2.360801 CCTCCTCCTTCTCTTTCTAGCG 59.639 54.545 0.00 0.00 0.00 4.26
696 702 3.283751 CTCCTCCTTCTCTTTCTAGCGA 58.716 50.000 0.00 0.00 0.00 4.93
697 703 3.018149 TCCTCCTTCTCTTTCTAGCGAC 58.982 50.000 0.00 0.00 0.00 5.19
698 704 3.020984 CCTCCTTCTCTTTCTAGCGACT 58.979 50.000 0.00 0.00 0.00 4.18
699 705 3.181491 CCTCCTTCTCTTTCTAGCGACTG 60.181 52.174 0.00 0.00 0.00 3.51
700 706 3.687125 TCCTTCTCTTTCTAGCGACTGA 58.313 45.455 0.00 0.00 0.00 3.41
701 707 4.079970 TCCTTCTCTTTCTAGCGACTGAA 58.920 43.478 0.00 0.00 0.00 3.02
702 708 4.523173 TCCTTCTCTTTCTAGCGACTGAAA 59.477 41.667 0.00 0.00 0.00 2.69
703 709 4.862018 CCTTCTCTTTCTAGCGACTGAAAG 59.138 45.833 14.21 14.21 46.07 2.62
710 716 4.698583 TCTAGCGACTGAAAGAGTAACC 57.301 45.455 0.00 0.00 37.43 2.85
711 717 4.333690 TCTAGCGACTGAAAGAGTAACCT 58.666 43.478 0.00 0.00 37.43 3.50
712 718 4.765856 TCTAGCGACTGAAAGAGTAACCTT 59.234 41.667 0.00 0.00 37.43 3.50
713 719 3.654414 AGCGACTGAAAGAGTAACCTTG 58.346 45.455 0.00 0.00 37.43 3.61
714 720 2.737252 GCGACTGAAAGAGTAACCTTGG 59.263 50.000 0.00 0.00 37.43 3.61
715 721 3.326747 CGACTGAAAGAGTAACCTTGGG 58.673 50.000 0.00 0.00 37.43 4.12
716 722 3.676093 GACTGAAAGAGTAACCTTGGGG 58.324 50.000 0.00 0.00 37.43 4.96
717 723 2.375509 ACTGAAAGAGTAACCTTGGGGG 59.624 50.000 0.00 0.00 37.43 5.40
718 724 2.642807 CTGAAAGAGTAACCTTGGGGGA 59.357 50.000 0.00 0.00 35.54 4.81
719 725 3.057586 TGAAAGAGTAACCTTGGGGGAA 58.942 45.455 0.00 0.00 38.76 3.97
720 726 3.464080 TGAAAGAGTAACCTTGGGGGAAA 59.536 43.478 0.00 0.00 38.76 3.13
721 727 4.079096 TGAAAGAGTAACCTTGGGGGAAAA 60.079 41.667 0.00 0.00 38.76 2.29
722 728 4.546224 AAGAGTAACCTTGGGGGAAAAA 57.454 40.909 0.00 0.00 38.76 1.94
723 729 4.114015 AGAGTAACCTTGGGGGAAAAAG 57.886 45.455 0.00 0.00 38.76 2.27
724 730 2.561419 GAGTAACCTTGGGGGAAAAAGC 59.439 50.000 0.00 0.00 38.76 3.51
725 731 1.621814 GTAACCTTGGGGGAAAAAGCC 59.378 52.381 0.00 0.00 38.76 4.35
726 732 0.267658 AACCTTGGGGGAAAAAGCCT 59.732 50.000 0.00 0.00 38.76 4.58
727 733 0.471780 ACCTTGGGGGAAAAAGCCTG 60.472 55.000 0.00 0.00 38.76 4.85
728 734 1.194121 CCTTGGGGGAAAAAGCCTGG 61.194 60.000 0.00 0.00 37.23 4.45
732 1086 1.977009 GGGGAAAAAGCCTGGTCCG 60.977 63.158 0.00 0.00 0.00 4.79
738 1092 2.450479 AAAAGCCTGGTCCGGTCTCG 62.450 60.000 0.00 0.00 0.00 4.04
741 1095 3.141488 CCTGGTCCGGTCTCGAGG 61.141 72.222 13.56 6.05 39.00 4.63
765 1119 4.591072 AGGCTAAGATGGAGGAAGATACAC 59.409 45.833 0.00 0.00 0.00 2.90
780 1134 3.130693 AGATACACCAGAGGTTAGAACGC 59.869 47.826 0.00 0.00 31.02 4.84
781 1135 0.038526 ACACCAGAGGTTAGAACGCG 60.039 55.000 3.53 3.53 31.02 6.01
784 1138 0.460284 CCAGAGGTTAGAACGCGCAT 60.460 55.000 5.73 0.00 0.00 4.73
785 1139 0.924090 CAGAGGTTAGAACGCGCATC 59.076 55.000 5.73 4.95 0.00 3.91
790 1144 1.202031 GGTTAGAACGCGCATCCTTTG 60.202 52.381 5.73 0.00 0.00 2.77
807 1161 3.976942 CCTTTGTTCTTGCGATTCAGTTG 59.023 43.478 0.00 0.00 0.00 3.16
808 1162 4.498009 CCTTTGTTCTTGCGATTCAGTTGT 60.498 41.667 0.00 0.00 0.00 3.32
810 1164 4.630894 TGTTCTTGCGATTCAGTTGTTT 57.369 36.364 0.00 0.00 0.00 2.83
812 1166 6.125327 TGTTCTTGCGATTCAGTTGTTTTA 57.875 33.333 0.00 0.00 0.00 1.52
817 1171 5.295431 TGCGATTCAGTTGTTTTATCCAG 57.705 39.130 0.00 0.00 0.00 3.86
819 1173 5.122239 TGCGATTCAGTTGTTTTATCCAGAG 59.878 40.000 0.00 0.00 0.00 3.35
824 1178 8.934023 ATTCAGTTGTTTTATCCAGAGGTTTA 57.066 30.769 0.00 0.00 0.00 2.01
828 1182 8.237267 CAGTTGTTTTATCCAGAGGTTTATGAC 58.763 37.037 0.00 0.00 0.00 3.06
830 1184 8.451748 GTTGTTTTATCCAGAGGTTTATGACTC 58.548 37.037 0.00 0.00 0.00 3.36
833 1187 9.232473 GTTTTATCCAGAGGTTTATGACTCTTT 57.768 33.333 0.00 0.00 41.90 2.52
840 1194 8.887717 CCAGAGGTTTATGACTCTTTTAGATTG 58.112 37.037 0.00 0.00 41.90 2.67
842 1196 7.554476 AGAGGTTTATGACTCTTTTAGATTGGC 59.446 37.037 0.00 0.00 41.05 4.52
850 1204 4.768968 ACTCTTTTAGATTGGCTGTGCATT 59.231 37.500 0.00 0.00 0.00 3.56
851 1205 5.945784 ACTCTTTTAGATTGGCTGTGCATTA 59.054 36.000 0.00 0.00 0.00 1.90
853 1207 4.637483 TTTAGATTGGCTGTGCATTAGC 57.363 40.909 15.29 15.29 40.41 3.09
856 1210 2.092538 AGATTGGCTGTGCATTAGCTCT 60.093 45.455 20.71 14.64 42.74 4.09
863 1217 1.551883 TGTGCATTAGCTCTGCTCTGA 59.448 47.619 18.75 0.08 40.44 3.27
871 1225 2.709213 AGCTCTGCTCTGATCAAAACC 58.291 47.619 0.00 0.00 30.62 3.27
876 1230 5.124457 GCTCTGCTCTGATCAAAACCATTTA 59.876 40.000 0.00 0.00 0.00 1.40
886 1240 8.755696 TGATCAAAACCATTTACAAACTATGC 57.244 30.769 0.00 0.00 0.00 3.14
887 1241 8.584157 TGATCAAAACCATTTACAAACTATGCT 58.416 29.630 0.00 0.00 0.00 3.79
888 1242 9.423061 GATCAAAACCATTTACAAACTATGCTT 57.577 29.630 0.00 0.00 0.00 3.91
889 1243 8.810652 TCAAAACCATTTACAAACTATGCTTC 57.189 30.769 0.00 0.00 0.00 3.86
915 1269 8.795786 TTTTCTACCATTTTCGTTTGATTCAG 57.204 30.769 0.00 0.00 0.00 3.02
918 1272 7.581476 TCTACCATTTTCGTTTGATTCAGTTC 58.419 34.615 0.00 0.00 0.00 3.01
921 1275 7.264947 ACCATTTTCGTTTGATTCAGTTCTTT 58.735 30.769 0.00 0.00 0.00 2.52
922 1276 7.222611 ACCATTTTCGTTTGATTCAGTTCTTTG 59.777 33.333 0.00 0.00 0.00 2.77
923 1277 6.567769 TTTTCGTTTGATTCAGTTCTTTGC 57.432 33.333 0.00 0.00 0.00 3.68
926 1280 5.510671 TCGTTTGATTCAGTTCTTTGCTTC 58.489 37.500 0.00 0.00 0.00 3.86
938 1292 8.345565 TCAGTTCTTTGCTTCTTTATTTCAGAC 58.654 33.333 0.00 0.00 0.00 3.51
941 1295 6.658831 TCTTTGCTTCTTTATTTCAGACACG 58.341 36.000 0.00 0.00 0.00 4.49
960 1314 3.565482 CACGGACAATAGATTTCATGGGG 59.435 47.826 0.00 0.00 0.00 4.96
963 1317 4.145052 GGACAATAGATTTCATGGGGGTC 58.855 47.826 0.00 0.00 0.00 4.46
968 1322 1.076777 ATTTCATGGGGGTCGGCTG 60.077 57.895 0.00 0.00 0.00 4.85
986 1340 1.895707 GTGCAGCTGCCTCTGTTGT 60.896 57.895 34.64 0.00 41.18 3.32
990 1344 1.815003 GCAGCTGCCTCTGTTGTTATT 59.185 47.619 28.76 0.00 36.49 1.40
998 1352 2.280628 CTCTGTTGTTATTCCCGAGCC 58.719 52.381 0.00 0.00 0.00 4.70
1005 1359 2.367567 TGTTATTCCCGAGCCTATGGAC 59.632 50.000 0.00 0.00 0.00 4.02
1006 1360 1.254026 TATTCCCGAGCCTATGGACG 58.746 55.000 0.00 0.00 0.00 4.79
1010 1364 0.529992 CCCGAGCCTATGGACGTTTC 60.530 60.000 0.00 0.00 0.00 2.78
1011 1365 0.460311 CCGAGCCTATGGACGTTTCT 59.540 55.000 0.00 0.00 0.00 2.52
1013 1367 2.543238 CCGAGCCTATGGACGTTTCTAC 60.543 54.545 0.00 0.00 0.00 2.59
1021 1375 2.828877 TGGACGTTTCTACTGTTGTGG 58.171 47.619 0.00 0.00 0.00 4.17
1041 1395 3.012518 GGCTGCTACTTGTGATGTTGAT 58.987 45.455 0.00 0.00 0.00 2.57
1042 1396 3.181503 GGCTGCTACTTGTGATGTTGATG 60.182 47.826 0.00 0.00 0.00 3.07
1043 1397 3.438087 GCTGCTACTTGTGATGTTGATGT 59.562 43.478 0.00 0.00 0.00 3.06
1044 1398 4.083110 GCTGCTACTTGTGATGTTGATGTT 60.083 41.667 0.00 0.00 0.00 2.71
1045 1399 5.361135 TGCTACTTGTGATGTTGATGTTG 57.639 39.130 0.00 0.00 0.00 3.33
1046 1400 5.062528 TGCTACTTGTGATGTTGATGTTGA 58.937 37.500 0.00 0.00 0.00 3.18
1047 1401 5.179929 TGCTACTTGTGATGTTGATGTTGAG 59.820 40.000 0.00 0.00 0.00 3.02
1048 1402 4.494350 ACTTGTGATGTTGATGTTGAGC 57.506 40.909 0.00 0.00 0.00 4.26
1064 1418 2.731572 TGAGCTAGTACTACCACCACC 58.268 52.381 0.00 0.00 0.00 4.61
1065 1419 2.310945 TGAGCTAGTACTACCACCACCT 59.689 50.000 0.00 0.00 0.00 4.00
1066 1420 2.688958 GAGCTAGTACTACCACCACCTG 59.311 54.545 0.00 0.00 0.00 4.00
1069 1423 0.974383 AGTACTACCACCACCTGCAC 59.026 55.000 0.00 0.00 0.00 4.57
1070 1424 0.036671 GTACTACCACCACCTGCACC 60.037 60.000 0.00 0.00 0.00 5.01
1071 1425 1.196104 TACTACCACCACCTGCACCC 61.196 60.000 0.00 0.00 0.00 4.61
1072 1426 2.448736 TACCACCACCTGCACCCA 60.449 61.111 0.00 0.00 0.00 4.51
1073 1427 1.850289 TACCACCACCTGCACCCAT 60.850 57.895 0.00 0.00 0.00 4.00
1080 1434 0.827089 CACCTGCACCCATTGAACCA 60.827 55.000 0.00 0.00 0.00 3.67
1092 1446 5.135020 ACCCATTGAACCAGATATTCCTGAT 59.865 40.000 0.00 0.00 36.29 2.90
1101 1455 7.636150 ACCAGATATTCCTGATTTTGTTCTG 57.364 36.000 0.00 0.00 36.29 3.02
1116 1470 3.355378 TGTTCTGCATCCTAATGTTGGG 58.645 45.455 0.00 0.00 35.18 4.12
1152 1506 3.259064 TGGTCACAGCGTTCTTAATAGC 58.741 45.455 0.00 0.00 0.00 2.97
1161 1515 4.022475 GCGTTCTTAATAGCTCTTTTGCG 58.978 43.478 0.00 0.00 38.13 4.85
1211 1565 6.223120 CAAAATGGGGTGAAAGTCCTAAAAG 58.777 40.000 0.00 0.00 0.00 2.27
1233 1587 6.770286 AGATTGATAAGAGAAATGGGGCTA 57.230 37.500 0.00 0.00 0.00 3.93
1245 1599 1.678970 GGGGCTAGGTGGTTTGCTG 60.679 63.158 0.00 0.00 0.00 4.41
1269 1623 9.661187 CTGCATGTAGATCATTTTACTCATTTC 57.339 33.333 4.57 0.00 34.09 2.17
1303 1657 3.842820 TCTCTCTTCTTGTTGCGATCAG 58.157 45.455 0.00 0.00 0.00 2.90
1329 1683 3.203487 ACACAAGGAGGAAAAGGTTGGTA 59.797 43.478 0.00 0.00 0.00 3.25
1341 1695 6.239120 GGAAAAGGTTGGTACTAGGGAAAAAC 60.239 42.308 0.00 0.00 0.00 2.43
1386 1740 3.131046 GGTCAATGTCTGGCATTTTAGGG 59.869 47.826 4.45 0.00 44.82 3.53
1420 1774 3.588842 TGGTGAGGTTGAGATCCAAAGAT 59.411 43.478 0.00 0.00 36.36 2.40
1428 1782 7.563906 AGGTTGAGATCCAAAGATTAAGAGAG 58.436 38.462 0.00 0.00 36.36 3.20
1440 1794 0.031414 TAAGAGAGGGGCCTACCACC 60.031 60.000 0.84 0.00 42.21 4.61
1458 1812 6.000246 ACCACCAAAGAAATTTTCATGGTT 58.000 33.333 25.19 15.67 44.60 3.67
1509 1863 4.830826 CCAAGAGGTTAAAACACCAGAC 57.169 45.455 0.00 0.00 39.62 3.51
1533 1887 6.423604 ACCTTTTGAAAGTTTTGTGTGAACAG 59.576 34.615 3.09 0.00 34.20 3.16
1559 1913 3.636300 CCAGATGAGTTCACCAAACCAAA 59.364 43.478 0.00 0.00 38.76 3.28
1572 1926 4.099419 ACCAAACCAAAGTCAATCAGGTTC 59.901 41.667 0.00 0.00 41.43 3.62
1611 1965 8.407064 GCTATGTTAGTACTGTCAGTGTTCTAT 58.593 37.037 16.03 5.87 0.00 1.98
1645 1999 4.018960 ACAAGAGAGGATATGTGCCAAAGT 60.019 41.667 0.00 0.00 0.00 2.66
1654 2008 6.950041 AGGATATGTGCCAAAGTATGCATATT 59.050 34.615 10.16 2.19 39.56 1.28
1701 2055 7.039270 ACCTTGACAAATTAAACTGGACAAAC 58.961 34.615 0.00 0.00 0.00 2.93
1714 2082 6.126863 ACTGGACAAACTATTCTTGATGGA 57.873 37.500 0.00 0.00 0.00 3.41
1756 2124 2.106074 CAATGCTAACGCGAGGCCA 61.106 57.895 15.93 4.78 39.65 5.36
1765 2133 2.514824 GCGAGGCCAGGAATCACC 60.515 66.667 5.01 0.00 39.35 4.02
1798 2166 7.371936 GTTGCCACTACTATCTTCAGGTATAG 58.628 42.308 0.00 0.00 0.00 1.31
1822 2194 8.642908 AGTTGTTTAAATGTTAAGTTCCTTGC 57.357 30.769 0.00 0.00 0.00 4.01
1828 2200 8.691661 TTAAATGTTAAGTTCCTTGCTTCTCT 57.308 30.769 0.00 0.00 0.00 3.10
1839 2211 4.114794 CCTTGCTTCTCTGTTTGTTTTGG 58.885 43.478 0.00 0.00 0.00 3.28
1844 2216 6.042143 TGCTTCTCTGTTTGTTTTGGATTTC 58.958 36.000 0.00 0.00 0.00 2.17
1850 2222 7.068593 TCTCTGTTTGTTTTGGATTTCAGTCAT 59.931 33.333 0.00 0.00 0.00 3.06
1856 2228 8.877864 TTGTTTTGGATTTCAGTCATATAGGT 57.122 30.769 0.00 0.00 0.00 3.08
1902 2275 8.559536 TGACAAGTCTTGTATTTTGATTCAGTC 58.440 33.333 18.17 1.79 45.52 3.51
1903 2276 8.450578 ACAAGTCTTGTATTTTGATTCAGTCA 57.549 30.769 16.74 0.00 43.27 3.41
1911 2284 3.581024 TTTGATTCAGTCAATGCAGGC 57.419 42.857 0.00 0.00 45.77 4.85
1923 2296 1.732941 ATGCAGGCGATCAAAACGTA 58.267 45.000 0.00 0.00 0.00 3.57
1932 2305 3.421231 GCGATCAAAACGTAGATCCTACG 59.579 47.826 20.71 20.71 45.44 3.51
1953 2326 3.744660 GGTTTGGCCTAGGATATGTGAG 58.255 50.000 14.75 0.00 0.00 3.51
1977 2350 1.596603 ATGCACCAAAGCTTTTTGCC 58.403 45.000 27.93 16.62 44.23 4.52
2002 2375 2.814336 GTTGAGAAGGACACCATGAACC 59.186 50.000 0.00 0.00 0.00 3.62
2009 2382 2.304761 AGGACACCATGAACCGTACATT 59.695 45.455 0.00 0.00 0.00 2.71
2029 2402 7.054491 ACATTAGAAAGAGTTTTTGGCATGT 57.946 32.000 0.00 0.00 0.00 3.21
2044 2417 3.265737 TGGCATGTTGAGGGTAAGTATGT 59.734 43.478 0.00 0.00 0.00 2.29
2051 2424 5.305902 TGTTGAGGGTAAGTATGTGACAGAA 59.694 40.000 0.00 0.00 0.00 3.02
2052 2425 6.183361 TGTTGAGGGTAAGTATGTGACAGAAA 60.183 38.462 0.00 0.00 0.00 2.52
2055 2428 6.934645 TGAGGGTAAGTATGTGACAGAAAAAG 59.065 38.462 0.00 0.00 0.00 2.27
2058 2431 7.661847 AGGGTAAGTATGTGACAGAAAAAGAAG 59.338 37.037 0.00 0.00 0.00 2.85
2059 2432 7.094762 GGGTAAGTATGTGACAGAAAAAGAAGG 60.095 40.741 0.00 0.00 0.00 3.46
2090 2463 4.581824 CCAAATCTGTATGATGGGAAGTGG 59.418 45.833 0.00 0.00 35.21 4.00
2096 2469 5.905331 TCTGTATGATGGGAAGTGGACTAAT 59.095 40.000 0.00 0.00 0.00 1.73
2098 2471 6.356556 TGTATGATGGGAAGTGGACTAATTG 58.643 40.000 0.00 0.00 0.00 2.32
2099 2472 4.927267 TGATGGGAAGTGGACTAATTGT 57.073 40.909 0.00 0.00 0.00 2.71
2100 2473 5.255397 TGATGGGAAGTGGACTAATTGTT 57.745 39.130 0.00 0.00 0.00 2.83
2120 2493 4.574013 TGTTTTTATTTTTGTGCAGCCTGG 59.426 37.500 0.00 0.00 0.00 4.45
2129 2502 1.529010 TGCAGCCTGGTGTGAAAGG 60.529 57.895 0.00 0.00 36.58 3.11
2134 2507 1.598701 GCCTGGTGTGAAAGGGCATC 61.599 60.000 0.00 0.00 42.08 3.91
2191 2564 3.496130 CAGATCACAGCTTCGAACAGTTT 59.504 43.478 0.00 0.00 0.00 2.66
2193 2566 5.177511 CAGATCACAGCTTCGAACAGTTTTA 59.822 40.000 0.00 0.00 0.00 1.52
2202 2575 5.115622 GCTTCGAACAGTTTTAAATGAGCAC 59.884 40.000 0.00 0.00 0.00 4.40
2216 2589 2.125512 GCACCCAGCTACTGTCCG 60.126 66.667 0.00 0.00 41.15 4.79
2229 2602 1.335182 ACTGTCCGTCTATCAGATGCG 59.665 52.381 0.00 0.00 33.93 4.73
2245 2618 2.916702 TGCGGATGAAGTCATGCTAT 57.083 45.000 10.55 0.00 41.72 2.97
2254 2627 5.164620 TGAAGTCATGCTATCACTTCCAA 57.835 39.130 17.08 2.41 43.66 3.53
2277 2650 8.393366 CCAACAAACAATGTATCATCTAGACTG 58.607 37.037 0.00 0.00 42.99 3.51
2280 2653 8.314021 ACAAACAATGTATCATCTAGACTGACA 58.686 33.333 0.00 0.00 41.63 3.58
2282 2655 6.511416 ACAATGTATCATCTAGACTGACAGC 58.489 40.000 1.25 0.00 0.00 4.40
2285 2658 0.741326 TCATCTAGACTGACAGCGCC 59.259 55.000 2.29 0.00 0.00 6.53
2293 2666 1.522355 CTGACAGCGCCCACTATGG 60.522 63.158 2.29 0.00 37.25 2.74
2316 2689 4.618927 GCTGAAAGATTTAAGCCATGCACA 60.619 41.667 3.58 0.00 38.48 4.57
2325 2698 2.658422 CCATGCACAGGCCCAAAC 59.342 61.111 0.00 0.00 40.13 2.93
2326 2699 2.208619 CCATGCACAGGCCCAAACA 61.209 57.895 0.00 0.00 40.13 2.83
2346 2731 2.611225 TTGGTGACATGCCAAAAACC 57.389 45.000 1.20 0.00 42.39 3.27
2406 2792 7.489757 AGAAGATAGTTGATCAAGTAAGTTCGC 59.510 37.037 23.39 14.62 36.98 4.70
2408 2794 7.268586 AGATAGTTGATCAAGTAAGTTCGCAT 58.731 34.615 23.39 8.50 36.98 4.73
2409 2795 5.536554 AGTTGATCAAGTAAGTTCGCATG 57.463 39.130 14.25 0.00 0.00 4.06
2414 2800 5.348724 TGATCAAGTAAGTTCGCATGTCTTC 59.651 40.000 0.00 0.00 0.00 2.87
2417 2803 5.525745 TCAAGTAAGTTCGCATGTCTTCAAA 59.474 36.000 0.00 0.00 0.00 2.69
2422 2808 5.940192 AGTTCGCATGTCTTCAAACATTA 57.060 34.783 0.00 0.00 37.78 1.90
2423 2809 5.689819 AGTTCGCATGTCTTCAAACATTAC 58.310 37.500 0.00 0.00 37.78 1.89
2437 2823 9.791820 CTTCAAACATTACTGATGATTAATGCA 57.208 29.630 2.82 0.00 38.67 3.96
2523 2914 2.793585 CGCAATTGCAAGTATGGAGCTG 60.794 50.000 28.77 5.07 42.21 4.24
2539 2930 2.422832 GAGCTGAATTGCAAGCTAGCTT 59.577 45.455 24.42 24.42 41.17 3.74
2550 2941 5.487433 TGCAAGCTAGCTTATGACAAGTTA 58.513 37.500 28.87 6.67 34.50 2.24
2551 2942 5.351465 TGCAAGCTAGCTTATGACAAGTTAC 59.649 40.000 28.87 4.81 34.50 2.50
2567 2958 8.585881 TGACAAGTTACTAGAATAAGTGAAGCT 58.414 33.333 0.00 0.00 0.00 3.74
2574 2965 7.114866 ACTAGAATAAGTGAAGCTAAGGACC 57.885 40.000 0.00 0.00 0.00 4.46
2600 2991 4.345859 TGTTCGATGGGTCAGTAAACTT 57.654 40.909 0.00 0.00 0.00 2.66
2601 2992 4.710324 TGTTCGATGGGTCAGTAAACTTT 58.290 39.130 0.00 0.00 0.00 2.66
2640 3031 6.929625 TGGAGAGATTCAGAAGACAACTAAG 58.070 40.000 0.00 0.00 0.00 2.18
2654 3045 2.486472 ACTAAGCTGCTGACATTGCT 57.514 45.000 1.35 0.00 37.37 3.91
2673 3064 2.297701 CTGTACTTGCACAACCACCTT 58.702 47.619 0.00 0.00 0.00 3.50
2674 3065 2.290641 CTGTACTTGCACAACCACCTTC 59.709 50.000 0.00 0.00 0.00 3.46
2684 3075 2.158623 ACAACCACCTTCTTGAGCATGA 60.159 45.455 0.00 0.00 0.00 3.07
2704 3095 1.117994 TGTTGGAAAGCACATGCCAA 58.882 45.000 0.00 0.00 43.38 4.52
2712 3103 0.107312 AGCACATGCCAAGGCTAGAG 60.107 55.000 12.96 4.75 43.38 2.43
2715 3106 2.286872 CACATGCCAAGGCTAGAGAAG 58.713 52.381 12.96 0.00 42.51 2.85
2757 3148 5.376854 TGCTTCTTTCAGGTTAGCATTTC 57.623 39.130 0.00 0.00 36.96 2.17
2758 3149 4.826733 TGCTTCTTTCAGGTTAGCATTTCA 59.173 37.500 0.00 0.00 36.96 2.69
2759 3150 5.048504 TGCTTCTTTCAGGTTAGCATTTCAG 60.049 40.000 0.00 0.00 36.96 3.02
2760 3151 5.048434 GCTTCTTTCAGGTTAGCATTTCAGT 60.048 40.000 0.00 0.00 0.00 3.41
2761 3152 6.560253 TTCTTTCAGGTTAGCATTTCAGTC 57.440 37.500 0.00 0.00 0.00 3.51
2762 3153 5.620206 TCTTTCAGGTTAGCATTTCAGTCA 58.380 37.500 0.00 0.00 0.00 3.41
2763 3154 6.061441 TCTTTCAGGTTAGCATTTCAGTCAA 58.939 36.000 0.00 0.00 0.00 3.18
2764 3155 5.947228 TTCAGGTTAGCATTTCAGTCAAG 57.053 39.130 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.287696 AGACATGGAGAAACAACAACCTTTATT 59.712 33.333 0.00 0.00 0.00 1.40
1 2 6.777580 AGACATGGAGAAACAACAACCTTTAT 59.222 34.615 0.00 0.00 0.00 1.40
2 3 6.039270 CAGACATGGAGAAACAACAACCTTTA 59.961 38.462 0.00 0.00 0.00 1.85
3 4 4.956075 AGACATGGAGAAACAACAACCTTT 59.044 37.500 0.00 0.00 0.00 3.11
4 5 4.339247 CAGACATGGAGAAACAACAACCTT 59.661 41.667 0.00 0.00 0.00 3.50
5 6 3.885297 CAGACATGGAGAAACAACAACCT 59.115 43.478 0.00 0.00 0.00 3.50
6 7 3.632145 ACAGACATGGAGAAACAACAACC 59.368 43.478 0.00 0.00 0.00 3.77
7 8 4.900635 ACAGACATGGAGAAACAACAAC 57.099 40.909 0.00 0.00 0.00 3.32
8 9 5.007234 CGTTACAGACATGGAGAAACAACAA 59.993 40.000 0.00 0.00 0.00 2.83
9 10 4.509970 CGTTACAGACATGGAGAAACAACA 59.490 41.667 0.00 0.00 0.00 3.33
10 11 4.510340 ACGTTACAGACATGGAGAAACAAC 59.490 41.667 0.00 0.00 0.00 3.32
11 12 4.699637 ACGTTACAGACATGGAGAAACAA 58.300 39.130 0.00 0.00 0.00 2.83
12 13 4.330944 ACGTTACAGACATGGAGAAACA 57.669 40.909 0.00 0.00 0.00 2.83
13 14 4.084013 CCAACGTTACAGACATGGAGAAAC 60.084 45.833 0.00 0.00 37.16 2.78
14 15 4.062293 CCAACGTTACAGACATGGAGAAA 58.938 43.478 0.00 0.00 37.16 2.52
15 16 3.070446 ACCAACGTTACAGACATGGAGAA 59.930 43.478 0.00 0.00 37.96 2.87
16 17 2.631062 ACCAACGTTACAGACATGGAGA 59.369 45.455 0.00 0.00 37.96 3.71
17 18 2.993899 GACCAACGTTACAGACATGGAG 59.006 50.000 0.00 0.00 37.96 3.86
18 19 2.631062 AGACCAACGTTACAGACATGGA 59.369 45.455 0.00 0.00 37.96 3.41
19 20 3.040147 AGACCAACGTTACAGACATGG 57.960 47.619 0.00 0.00 39.56 3.66
32 33 1.589803 ACCACGCTTGTAAGACCAAC 58.410 50.000 0.00 0.00 0.00 3.77
36 37 3.846360 ACATCTACCACGCTTGTAAGAC 58.154 45.455 0.00 0.00 0.00 3.01
39 40 3.945981 TGACATCTACCACGCTTGTAA 57.054 42.857 0.00 0.00 0.00 2.41
40 41 3.945981 TTGACATCTACCACGCTTGTA 57.054 42.857 0.00 0.00 0.00 2.41
47 48 8.871686 ATTTTGAAAAGTTTGACATCTACCAC 57.128 30.769 0.00 0.00 0.00 4.16
79 84 2.154462 CTACACTTCCCAACTGCCTTG 58.846 52.381 0.00 0.00 0.00 3.61
91 96 4.380867 CCATTTTGACCATGCCTACACTTC 60.381 45.833 0.00 0.00 0.00 3.01
97 102 4.209538 CATCTCCATTTTGACCATGCCTA 58.790 43.478 0.00 0.00 0.00 3.93
112 117 6.209589 GCTACAGGATATTCAGTACATCTCCA 59.790 42.308 0.00 0.00 0.00 3.86
114 119 7.087639 GTGCTACAGGATATTCAGTACATCTC 58.912 42.308 0.00 0.00 0.00 2.75
127 132 0.179111 GCTGCGTGTGCTACAGGATA 60.179 55.000 11.46 1.81 43.34 2.59
139 144 1.662629 CCTACTGAATCTTGCTGCGTG 59.337 52.381 0.00 0.00 0.00 5.34
159 164 4.966366 GTGATCGAGATTTTGCAATACAGC 59.034 41.667 0.00 0.00 0.00 4.40
163 168 7.264947 TCAGTAGTGATCGAGATTTTGCAATA 58.735 34.615 0.00 0.00 0.00 1.90
164 169 6.108687 TCAGTAGTGATCGAGATTTTGCAAT 58.891 36.000 0.00 0.00 0.00 3.56
167 172 6.408858 TTTCAGTAGTGATCGAGATTTTGC 57.591 37.500 0.00 0.00 30.85 3.68
192 197 1.717032 ATAGGGCCTCGTATGAAGCA 58.283 50.000 10.74 0.00 32.98 3.91
213 218 5.007385 ACATTAAAGTCTACCAGCCTACG 57.993 43.478 0.00 0.00 0.00 3.51
226 231 2.355412 GCCCCTGGACGTACATTAAAGT 60.355 50.000 0.00 0.00 0.00 2.66
233 238 2.509651 AAACGCCCCTGGACGTACA 61.510 57.895 13.77 0.00 42.68 2.90
240 245 2.824041 CGGATCAAACGCCCCTGG 60.824 66.667 0.00 0.00 0.00 4.45
242 247 0.958876 GAAACGGATCAAACGCCCCT 60.959 55.000 0.00 0.00 34.00 4.79
245 250 0.168128 CCAGAAACGGATCAAACGCC 59.832 55.000 0.00 0.00 34.00 5.68
254 259 1.153127 AAACGCACCCAGAAACGGA 60.153 52.632 0.00 0.00 0.00 4.69
263 268 3.670377 GGAGCACCAAACGCACCC 61.670 66.667 0.00 0.00 34.41 4.61
288 293 2.649257 GCGTGATATCGTCTGCGGC 61.649 63.158 0.00 0.00 38.89 6.53
289 294 1.271446 CTGCGTGATATCGTCTGCGG 61.271 60.000 0.00 0.96 38.89 5.69
305 310 1.927174 CAGGTACGTGAATGCTACTGC 59.073 52.381 10.02 0.00 40.20 4.40
306 311 1.927174 GCAGGTACGTGAATGCTACTG 59.073 52.381 19.35 2.18 35.78 2.74
307 312 1.825474 AGCAGGTACGTGAATGCTACT 59.175 47.619 19.35 2.09 46.70 2.57
345 350 6.299141 AGAGAAGAGCTGACAATTTAACCAA 58.701 36.000 0.00 0.00 0.00 3.67
348 353 7.984617 AGGATAGAGAAGAGCTGACAATTTAAC 59.015 37.037 0.00 0.00 0.00 2.01
349 354 8.083828 AGGATAGAGAAGAGCTGACAATTTAA 57.916 34.615 0.00 0.00 0.00 1.52
370 375 2.038952 TCACACTTTGCAGCTGTAGGAT 59.961 45.455 16.64 0.00 0.00 3.24
375 380 1.755179 AACTCACACTTTGCAGCTGT 58.245 45.000 16.64 0.00 0.00 4.40
381 386 6.598753 TCTGTAGTTTAACTCACACTTTGC 57.401 37.500 0.00 0.00 0.00 3.68
421 427 2.858868 CACAGCTCTCTTGCGTGC 59.141 61.111 0.00 0.00 38.13 5.34
422 428 1.296755 ATGCACAGCTCTCTTGCGTG 61.297 55.000 0.00 0.00 39.22 5.34
428 434 1.447489 GACGCATGCACAGCTCTCT 60.447 57.895 19.57 0.00 0.00 3.10
434 440 0.933097 GTATGAGGACGCATGCACAG 59.067 55.000 19.57 3.77 32.11 3.66
444 450 3.378427 GCCAGGAAAATGTGTATGAGGAC 59.622 47.826 0.00 0.00 0.00 3.85
448 454 3.448093 TGGCCAGGAAAATGTGTATGA 57.552 42.857 0.00 0.00 0.00 2.15
455 461 2.830923 TGTACCATTGGCCAGGAAAATG 59.169 45.455 17.65 12.27 0.00 2.32
456 462 2.831526 GTGTACCATTGGCCAGGAAAAT 59.168 45.455 17.65 0.00 0.00 1.82
457 463 2.243810 GTGTACCATTGGCCAGGAAAA 58.756 47.619 17.65 0.00 0.00 2.29
458 464 1.145945 TGTGTACCATTGGCCAGGAAA 59.854 47.619 17.65 0.00 0.00 3.13
460 466 0.037590 GTGTGTACCATTGGCCAGGA 59.962 55.000 17.65 0.00 0.00 3.86
461 467 0.965363 GGTGTGTACCATTGGCCAGG 60.965 60.000 5.11 7.66 46.71 4.45
462 468 2.566824 GGTGTGTACCATTGGCCAG 58.433 57.895 5.11 0.00 46.71 4.85
463 469 4.832741 GGTGTGTACCATTGGCCA 57.167 55.556 0.00 0.00 46.71 5.36
468 474 9.990885 GCTAGATGCATGTAGGTGTGTACCATT 62.991 44.444 26.93 0.00 44.91 3.16
469 475 8.633522 GCTAGATGCATGTAGGTGTGTACCAT 62.634 46.154 26.93 0.00 44.91 3.55
470 476 7.414489 GCTAGATGCATGTAGGTGTGTACCA 62.414 48.000 26.93 0.00 44.91 3.25
471 477 5.033713 GCTAGATGCATGTAGGTGTGTACC 61.034 50.000 26.93 8.57 43.77 3.34
472 478 4.051922 GCTAGATGCATGTAGGTGTGTAC 58.948 47.826 26.93 9.19 42.31 2.90
473 479 3.960755 AGCTAGATGCATGTAGGTGTGTA 59.039 43.478 28.66 0.00 45.94 2.90
474 480 2.768527 AGCTAGATGCATGTAGGTGTGT 59.231 45.455 28.66 0.00 45.94 3.72
475 481 3.129109 CAGCTAGATGCATGTAGGTGTG 58.871 50.000 36.52 22.80 43.19 3.82
476 482 2.103771 CCAGCTAGATGCATGTAGGTGT 59.896 50.000 38.98 9.46 45.29 4.16
477 483 2.103771 ACCAGCTAGATGCATGTAGGTG 59.896 50.000 37.34 37.34 45.90 4.00
478 484 2.402564 ACCAGCTAGATGCATGTAGGT 58.597 47.619 25.17 25.17 45.94 3.08
479 485 3.136763 CAACCAGCTAGATGCATGTAGG 58.863 50.000 26.93 16.75 45.94 3.18
480 486 3.136763 CCAACCAGCTAGATGCATGTAG 58.863 50.000 23.14 23.14 45.94 2.74
481 487 2.771372 TCCAACCAGCTAGATGCATGTA 59.229 45.455 2.46 2.92 45.94 2.29
482 488 1.561076 TCCAACCAGCTAGATGCATGT 59.439 47.619 2.46 1.37 45.94 3.21
483 489 2.336945 TCCAACCAGCTAGATGCATG 57.663 50.000 2.46 3.44 45.94 4.06
484 490 3.370840 TTTCCAACCAGCTAGATGCAT 57.629 42.857 0.00 0.00 45.94 3.96
485 491 2.877097 TTTCCAACCAGCTAGATGCA 57.123 45.000 1.39 0.00 45.94 3.96
507 513 1.542492 CAACAGGGCTGCAAATCTCT 58.458 50.000 0.50 0.00 0.00 3.10
515 521 3.677648 CCAGTGCAACAGGGCTGC 61.678 66.667 0.00 0.00 40.28 5.25
535 541 5.845985 ATTAACTCGTATGAATCATGGCG 57.154 39.130 5.91 10.34 0.00 5.69
541 547 6.159988 AGCCTGCTATTAACTCGTATGAATC 58.840 40.000 0.00 0.00 0.00 2.52
554 560 2.500098 AGACCAAACGAGCCTGCTATTA 59.500 45.455 0.00 0.00 0.00 0.98
561 567 1.755393 AACGGAGACCAAACGAGCCT 61.755 55.000 0.00 0.00 0.00 4.58
562 568 1.301479 AACGGAGACCAAACGAGCC 60.301 57.895 0.00 0.00 0.00 4.70
563 569 1.860078 CAACGGAGACCAAACGAGC 59.140 57.895 0.00 0.00 0.00 5.03
567 573 1.798813 CAGTAGCAACGGAGACCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
568 574 1.270625 CCAGTAGCAACGGAGACCAAA 60.271 52.381 0.00 0.00 0.00 3.28
569 575 0.320374 CCAGTAGCAACGGAGACCAA 59.680 55.000 0.00 0.00 0.00 3.67
570 576 0.541063 TCCAGTAGCAACGGAGACCA 60.541 55.000 0.00 0.00 0.00 4.02
571 577 0.824759 ATCCAGTAGCAACGGAGACC 59.175 55.000 0.00 0.00 33.72 3.85
576 582 0.176680 AGCTCATCCAGTAGCAACGG 59.823 55.000 0.00 0.00 41.32 4.44
577 583 1.565305 GAGCTCATCCAGTAGCAACG 58.435 55.000 9.40 0.00 41.32 4.10
578 584 1.565305 CGAGCTCATCCAGTAGCAAC 58.435 55.000 15.40 0.00 41.32 4.17
583 589 2.640316 TAGAGCGAGCTCATCCAGTA 57.360 50.000 24.70 6.62 44.99 2.74
590 596 2.690497 AGTGCTATTTAGAGCGAGCTCA 59.310 45.455 24.70 9.88 45.99 4.26
594 600 3.799420 GGTGAAGTGCTATTTAGAGCGAG 59.201 47.826 0.00 0.00 45.99 5.03
609 615 1.868519 GCGTCTCTTTCGTGGTGAAGT 60.869 52.381 0.00 0.00 37.99 3.01
610 616 0.784778 GCGTCTCTTTCGTGGTGAAG 59.215 55.000 0.00 0.00 37.99 3.02
614 620 1.081376 CTCGCGTCTCTTTCGTGGT 60.081 57.895 5.77 0.00 38.95 4.16
619 625 1.807573 CTGCCCTCGCGTCTCTTTC 60.808 63.158 5.77 0.00 38.08 2.62
621 627 4.443266 GCTGCCCTCGCGTCTCTT 62.443 66.667 5.77 0.00 38.08 2.85
623 629 4.742201 TTGCTGCCCTCGCGTCTC 62.742 66.667 5.77 0.00 38.08 3.36
629 635 2.359107 TCTGCTTTGCTGCCCTCG 60.359 61.111 0.00 0.00 0.00 4.63
631 637 2.035312 CCTCTGCTTTGCTGCCCT 59.965 61.111 0.00 0.00 0.00 5.19
651 657 2.106684 AGAAGAAGGGACCGAAGCTTTT 59.893 45.455 0.00 0.00 0.00 2.27
652 658 1.700186 AGAAGAAGGGACCGAAGCTTT 59.300 47.619 0.00 0.00 0.00 3.51
656 662 1.903183 AGGAAGAAGAAGGGACCGAAG 59.097 52.381 0.00 0.00 0.00 3.79
659 665 0.537653 GGAGGAAGAAGAAGGGACCG 59.462 60.000 0.00 0.00 0.00 4.79
665 671 4.352893 AGAGAAGGAGGAGGAAGAAGAAG 58.647 47.826 0.00 0.00 0.00 2.85
667 673 4.412060 AAGAGAAGGAGGAGGAAGAAGA 57.588 45.455 0.00 0.00 0.00 2.87
668 674 4.777366 AGAAAGAGAAGGAGGAGGAAGAAG 59.223 45.833 0.00 0.00 0.00 2.85
670 676 4.412060 AGAAAGAGAAGGAGGAGGAAGA 57.588 45.455 0.00 0.00 0.00 2.87
687 693 5.243283 AGGTTACTCTTTCAGTCGCTAGAAA 59.757 40.000 0.00 0.00 36.43 2.52
690 696 4.705337 AGGTTACTCTTTCAGTCGCTAG 57.295 45.455 0.00 0.00 36.43 3.42
691 697 4.321750 CCAAGGTTACTCTTTCAGTCGCTA 60.322 45.833 0.00 0.00 36.43 4.26
692 698 3.555168 CCAAGGTTACTCTTTCAGTCGCT 60.555 47.826 0.00 0.00 36.43 4.93
693 699 2.737252 CCAAGGTTACTCTTTCAGTCGC 59.263 50.000 0.00 0.00 36.43 5.19
695 701 3.559384 CCCCCAAGGTTACTCTTTCAGTC 60.559 52.174 0.00 0.00 36.43 3.51
696 702 2.375509 CCCCCAAGGTTACTCTTTCAGT 59.624 50.000 0.00 0.00 39.41 3.41
697 703 2.642807 TCCCCCAAGGTTACTCTTTCAG 59.357 50.000 0.00 0.00 36.75 3.02
698 704 2.708759 TCCCCCAAGGTTACTCTTTCA 58.291 47.619 0.00 0.00 36.75 2.69
699 705 3.801307 TTCCCCCAAGGTTACTCTTTC 57.199 47.619 0.00 0.00 36.75 2.62
700 706 4.546224 TTTTCCCCCAAGGTTACTCTTT 57.454 40.909 0.00 0.00 36.75 2.52
701 707 4.480115 CTTTTTCCCCCAAGGTTACTCTT 58.520 43.478 0.00 0.00 36.75 2.85
702 708 3.754172 GCTTTTTCCCCCAAGGTTACTCT 60.754 47.826 0.00 0.00 36.75 3.24
703 709 2.561419 GCTTTTTCCCCCAAGGTTACTC 59.439 50.000 0.00 0.00 36.75 2.59
704 710 2.605257 GCTTTTTCCCCCAAGGTTACT 58.395 47.619 0.00 0.00 36.75 2.24
705 711 1.621814 GGCTTTTTCCCCCAAGGTTAC 59.378 52.381 0.00 0.00 36.75 2.50
706 712 1.505977 AGGCTTTTTCCCCCAAGGTTA 59.494 47.619 0.00 0.00 36.75 2.85
707 713 0.267658 AGGCTTTTTCCCCCAAGGTT 59.732 50.000 0.00 0.00 36.75 3.50
708 714 0.471780 CAGGCTTTTTCCCCCAAGGT 60.472 55.000 0.00 0.00 36.75 3.50
709 715 1.194121 CCAGGCTTTTTCCCCCAAGG 61.194 60.000 0.00 0.00 0.00 3.61
710 716 0.471780 ACCAGGCTTTTTCCCCCAAG 60.472 55.000 0.00 0.00 0.00 3.61
711 717 0.471022 GACCAGGCTTTTTCCCCCAA 60.471 55.000 0.00 0.00 0.00 4.12
712 718 1.155155 GACCAGGCTTTTTCCCCCA 59.845 57.895 0.00 0.00 0.00 4.96
713 719 1.609501 GGACCAGGCTTTTTCCCCC 60.610 63.158 0.00 0.00 0.00 5.40
714 720 1.977009 CGGACCAGGCTTTTTCCCC 60.977 63.158 0.00 0.00 0.00 4.81
715 721 1.977009 CCGGACCAGGCTTTTTCCC 60.977 63.158 0.00 0.00 0.00 3.97
716 722 1.228459 ACCGGACCAGGCTTTTTCC 60.228 57.895 9.46 0.00 33.69 3.13
717 723 0.250770 AGACCGGACCAGGCTTTTTC 60.251 55.000 9.46 0.00 33.69 2.29
718 724 0.250770 GAGACCGGACCAGGCTTTTT 60.251 55.000 9.46 0.00 33.69 1.94
719 725 1.375326 GAGACCGGACCAGGCTTTT 59.625 57.895 9.46 0.00 33.69 2.27
720 726 2.943978 CGAGACCGGACCAGGCTTT 61.944 63.158 9.46 0.00 33.69 3.51
721 727 3.382832 CGAGACCGGACCAGGCTT 61.383 66.667 9.46 0.00 33.69 4.35
722 728 4.361971 TCGAGACCGGACCAGGCT 62.362 66.667 9.46 0.00 36.24 4.58
723 729 3.827898 CTCGAGACCGGACCAGGC 61.828 72.222 9.46 0.00 36.24 4.85
724 730 3.141488 CCTCGAGACCGGACCAGG 61.141 72.222 15.71 3.89 36.24 4.45
725 731 2.045242 TCCTCGAGACCGGACCAG 60.045 66.667 15.71 0.00 36.24 4.00
726 732 2.045242 CTCCTCGAGACCGGACCA 60.045 66.667 15.71 0.00 36.24 4.02
727 733 2.829458 CCTCCTCGAGACCGGACC 60.829 72.222 15.71 0.00 36.24 4.46
728 734 2.605854 TAGCCTCCTCGAGACCGGAC 62.606 65.000 15.71 0.10 36.24 4.79
732 1086 1.611491 CATCTTAGCCTCCTCGAGACC 59.389 57.143 15.71 0.00 0.00 3.85
738 1092 2.390225 TCCTCCATCTTAGCCTCCTC 57.610 55.000 0.00 0.00 0.00 3.71
741 1095 4.835615 TGTATCTTCCTCCATCTTAGCCTC 59.164 45.833 0.00 0.00 0.00 4.70
765 1119 0.460284 ATGCGCGTTCTAACCTCTGG 60.460 55.000 8.43 0.00 0.00 3.86
798 1152 7.454260 AACCTCTGGATAAAACAACTGAATC 57.546 36.000 0.00 0.00 0.00 2.52
807 1161 8.794335 AAGAGTCATAAACCTCTGGATAAAAC 57.206 34.615 0.00 0.00 0.00 2.43
808 1162 9.807921 AAAAGAGTCATAAACCTCTGGATAAAA 57.192 29.630 0.00 0.00 0.00 1.52
812 1166 8.380742 TCTAAAAGAGTCATAAACCTCTGGAT 57.619 34.615 0.00 0.00 0.00 3.41
817 1171 7.554476 AGCCAATCTAAAAGAGTCATAAACCTC 59.446 37.037 0.00 0.00 0.00 3.85
819 1173 7.121315 ACAGCCAATCTAAAAGAGTCATAAACC 59.879 37.037 0.00 0.00 0.00 3.27
824 1178 4.397417 GCACAGCCAATCTAAAAGAGTCAT 59.603 41.667 0.00 0.00 0.00 3.06
828 1182 4.978083 ATGCACAGCCAATCTAAAAGAG 57.022 40.909 0.00 0.00 0.00 2.85
830 1184 5.039333 GCTAATGCACAGCCAATCTAAAAG 58.961 41.667 10.40 0.00 39.41 2.27
833 1187 3.879295 GAGCTAATGCACAGCCAATCTAA 59.121 43.478 16.46 0.00 42.74 2.10
840 1194 0.747283 AGCAGAGCTAATGCACAGCC 60.747 55.000 21.73 9.57 46.31 4.85
842 1196 1.934525 CAGAGCAGAGCTAATGCACAG 59.065 52.381 21.73 11.20 46.31 3.66
850 1204 3.261643 TGGTTTTGATCAGAGCAGAGCTA 59.738 43.478 8.45 0.00 39.88 3.32
851 1205 2.039480 TGGTTTTGATCAGAGCAGAGCT 59.961 45.455 8.45 0.00 43.88 4.09
853 1207 5.640189 AAATGGTTTTGATCAGAGCAGAG 57.360 39.130 15.28 0.00 0.00 3.35
856 1210 6.647334 TTGTAAATGGTTTTGATCAGAGCA 57.353 33.333 13.25 13.25 0.00 4.26
860 1214 8.863049 GCATAGTTTGTAAATGGTTTTGATCAG 58.137 33.333 0.00 0.00 0.00 2.90
863 1217 9.423061 GAAGCATAGTTTGTAAATGGTTTTGAT 57.577 29.630 0.00 0.00 40.38 2.57
876 1230 8.409358 AATGGTAGAAAAGAAGCATAGTTTGT 57.591 30.769 0.00 0.00 33.66 2.83
884 1238 6.385649 AACGAAAATGGTAGAAAAGAAGCA 57.614 33.333 0.00 0.00 0.00 3.91
885 1239 6.915843 TCAAACGAAAATGGTAGAAAAGAAGC 59.084 34.615 0.00 0.00 0.00 3.86
886 1240 9.463443 AATCAAACGAAAATGGTAGAAAAGAAG 57.537 29.630 0.00 0.00 0.00 2.85
887 1241 9.458374 GAATCAAACGAAAATGGTAGAAAAGAA 57.542 29.630 0.00 0.00 0.00 2.52
888 1242 8.625651 TGAATCAAACGAAAATGGTAGAAAAGA 58.374 29.630 0.00 0.00 0.00 2.52
889 1243 8.795786 TGAATCAAACGAAAATGGTAGAAAAG 57.204 30.769 0.00 0.00 0.00 2.27
896 1250 6.391227 AGAACTGAATCAAACGAAAATGGT 57.609 33.333 0.00 0.00 0.00 3.55
915 1269 7.112148 CGTGTCTGAAATAAAGAAGCAAAGAAC 59.888 37.037 0.00 0.00 0.00 3.01
918 1272 5.853282 CCGTGTCTGAAATAAAGAAGCAAAG 59.147 40.000 0.00 0.00 0.00 2.77
921 1275 4.451096 GTCCGTGTCTGAAATAAAGAAGCA 59.549 41.667 0.00 0.00 0.00 3.91
922 1276 4.451096 TGTCCGTGTCTGAAATAAAGAAGC 59.549 41.667 0.00 0.00 0.00 3.86
923 1277 6.539649 TTGTCCGTGTCTGAAATAAAGAAG 57.460 37.500 0.00 0.00 0.00 2.85
926 1280 7.827819 TCTATTGTCCGTGTCTGAAATAAAG 57.172 36.000 0.00 0.00 0.00 1.85
938 1292 3.565482 CCCCATGAAATCTATTGTCCGTG 59.435 47.826 0.00 0.00 0.00 4.94
941 1295 4.145052 GACCCCCATGAAATCTATTGTCC 58.855 47.826 0.00 0.00 0.00 4.02
968 1322 1.450531 AACAACAGAGGCAGCTGCAC 61.451 55.000 37.63 29.04 44.36 4.57
972 1326 2.619074 GGGAATAACAACAGAGGCAGCT 60.619 50.000 0.00 0.00 0.00 4.24
978 1332 2.093447 AGGCTCGGGAATAACAACAGAG 60.093 50.000 0.00 0.00 0.00 3.35
982 1336 3.139077 CCATAGGCTCGGGAATAACAAC 58.861 50.000 0.00 0.00 0.00 3.32
986 1340 1.616865 CGTCCATAGGCTCGGGAATAA 59.383 52.381 8.48 0.00 31.32 1.40
990 1344 0.974010 AAACGTCCATAGGCTCGGGA 60.974 55.000 3.13 3.13 0.00 5.14
998 1352 4.625742 CCACAACAGTAGAAACGTCCATAG 59.374 45.833 0.00 0.00 0.00 2.23
1005 1359 1.069906 GCAGCCACAACAGTAGAAACG 60.070 52.381 0.00 0.00 0.00 3.60
1006 1360 2.222027 AGCAGCCACAACAGTAGAAAC 58.778 47.619 0.00 0.00 0.00 2.78
1010 1364 2.738846 CAAGTAGCAGCCACAACAGTAG 59.261 50.000 0.00 0.00 0.00 2.57
1011 1365 2.104111 ACAAGTAGCAGCCACAACAGTA 59.896 45.455 0.00 0.00 0.00 2.74
1013 1367 1.265095 CACAAGTAGCAGCCACAACAG 59.735 52.381 0.00 0.00 0.00 3.16
1021 1375 3.438087 ACATCAACATCACAAGTAGCAGC 59.562 43.478 0.00 0.00 0.00 5.25
1041 1395 3.508793 GTGGTGGTAGTACTAGCTCAACA 59.491 47.826 25.92 19.26 33.56 3.33
1042 1396 3.119209 GGTGGTGGTAGTACTAGCTCAAC 60.119 52.174 27.42 25.63 32.95 3.18
1043 1397 3.094572 GGTGGTGGTAGTACTAGCTCAA 58.905 50.000 27.42 17.77 34.84 3.02
1044 1398 2.310945 AGGTGGTGGTAGTACTAGCTCA 59.689 50.000 27.42 22.28 35.37 4.26
1045 1399 2.688958 CAGGTGGTGGTAGTACTAGCTC 59.311 54.545 27.42 23.93 37.72 4.09
1046 1400 2.736347 CAGGTGGTGGTAGTACTAGCT 58.264 52.381 27.42 9.86 39.93 3.32
1047 1401 1.136500 GCAGGTGGTGGTAGTACTAGC 59.864 57.143 22.42 22.42 0.00 3.42
1048 1402 2.165845 GTGCAGGTGGTGGTAGTACTAG 59.834 54.545 1.87 0.00 0.00 2.57
1064 1418 1.843368 ATCTGGTTCAATGGGTGCAG 58.157 50.000 0.00 0.00 0.00 4.41
1065 1419 3.668141 ATATCTGGTTCAATGGGTGCA 57.332 42.857 0.00 0.00 0.00 4.57
1066 1420 3.319122 GGAATATCTGGTTCAATGGGTGC 59.681 47.826 0.00 0.00 0.00 5.01
1069 1423 5.052693 TCAGGAATATCTGGTTCAATGGG 57.947 43.478 0.00 0.00 35.58 4.00
1070 1424 7.592885 AAATCAGGAATATCTGGTTCAATGG 57.407 36.000 0.00 0.00 37.13 3.16
1071 1425 8.472413 ACAAAATCAGGAATATCTGGTTCAATG 58.528 33.333 0.00 0.00 37.13 2.82
1072 1426 8.599624 ACAAAATCAGGAATATCTGGTTCAAT 57.400 30.769 0.00 0.00 37.13 2.57
1073 1427 8.421249 AACAAAATCAGGAATATCTGGTTCAA 57.579 30.769 0.00 0.00 37.13 2.69
1080 1434 7.014038 GGATGCAGAACAAAATCAGGAATATCT 59.986 37.037 0.00 0.00 0.00 1.98
1092 1446 5.279406 CCCAACATTAGGATGCAGAACAAAA 60.279 40.000 0.00 0.00 36.72 2.44
1101 1455 5.904362 GGATTATCCCAACATTAGGATGC 57.096 43.478 0.00 0.00 42.91 3.91
1116 1470 5.297029 GCTGTGACCAGTTTTAGGGATTATC 59.703 44.000 0.00 0.00 41.02 1.75
1152 1506 4.161333 CAATGTCTTTAGGCGCAAAAGAG 58.839 43.478 27.60 16.99 42.13 2.85
1211 1565 5.942826 CCTAGCCCCATTTCTCTTATCAATC 59.057 44.000 0.00 0.00 0.00 2.67
1233 1587 1.073763 TCTACATGCAGCAAACCACCT 59.926 47.619 0.00 0.00 0.00 4.00
1245 1599 9.661187 CTGAAATGAGTAAAATGATCTACATGC 57.339 33.333 0.00 0.00 39.39 4.06
1269 1623 6.261826 ACAAGAAGAGAGAATGGTTTCAACTG 59.738 38.462 0.00 0.00 34.08 3.16
1272 1626 6.460123 GCAACAAGAAGAGAGAATGGTTTCAA 60.460 38.462 0.00 0.00 34.08 2.69
1273 1627 5.009010 GCAACAAGAAGAGAGAATGGTTTCA 59.991 40.000 0.00 0.00 34.08 2.69
1303 1657 4.353383 ACCTTTTCCTCCTTGTGTCTAC 57.647 45.455 0.00 0.00 0.00 2.59
1329 1683 4.898861 TGAGCAAAATGGTTTTTCCCTAGT 59.101 37.500 0.00 0.00 32.72 2.57
1341 1695 5.221067 CCTCTCATTGATCTGAGCAAAATGG 60.221 44.000 12.75 7.17 42.00 3.16
1380 1734 3.072476 CACCACCTTCTCTTGTCCCTAAA 59.928 47.826 0.00 0.00 0.00 1.85
1386 1740 1.694696 ACCTCACCACCTTCTCTTGTC 59.305 52.381 0.00 0.00 0.00 3.18
1420 1774 1.624391 GGTGGTAGGCCCCTCTCTTAA 60.624 57.143 0.00 0.00 0.00 1.85
1428 1782 0.113580 TTTCTTTGGTGGTAGGCCCC 59.886 55.000 0.00 0.00 0.00 5.80
1470 1824 7.456902 ACCTCTTGGTGGTTAAGATCTAGTTAA 59.543 37.037 0.00 0.00 46.51 2.01
1471 1825 6.958192 ACCTCTTGGTGGTTAAGATCTAGTTA 59.042 38.462 0.00 0.00 46.51 2.24
1473 1827 5.342866 ACCTCTTGGTGGTTAAGATCTAGT 58.657 41.667 0.00 0.00 46.51 2.57
1509 1863 6.618379 GCTGTTCACACAAAACTTTCAAAAGG 60.618 38.462 7.37 0.00 34.74 3.11
1533 1887 2.408271 TGGTGAACTCATCTGGATGC 57.592 50.000 5.77 0.00 38.65 3.91
1559 1913 3.319122 GGCAAGTTTGAACCTGATTGACT 59.681 43.478 0.00 0.00 0.00 3.41
1572 1926 5.772521 ACTAACATAGCAAAGGCAAGTTTG 58.227 37.500 2.01 2.01 44.61 2.93
1611 1965 2.920271 TCCTCTCTTGTCTCTGGGACTA 59.080 50.000 9.42 0.00 44.74 2.59
1645 1999 5.063180 GCATAAGCCAGCAAATATGCATA 57.937 39.130 20.62 9.27 46.16 3.14
1654 2008 0.620030 TCAGGAGCATAAGCCAGCAA 59.380 50.000 0.00 0.00 43.56 3.91
1662 2016 4.724399 TGTCAAGGTTTTCAGGAGCATAA 58.276 39.130 0.00 0.00 0.00 1.90
1701 2055 5.010922 ACTCTAGCTGCTCCATCAAGAATAG 59.989 44.000 4.91 0.00 0.00 1.73
1714 2082 1.265236 ACTGCTGAACTCTAGCTGCT 58.735 50.000 7.57 7.57 41.91 4.24
1765 2133 5.431765 AGATAGTAGTGGCAACCAAAGATG 58.568 41.667 0.00 0.00 34.18 2.90
1818 2190 4.997565 TCCAAAACAAACAGAGAAGCAAG 58.002 39.130 0.00 0.00 0.00 4.01
1822 2194 7.260603 ACTGAAATCCAAAACAAACAGAGAAG 58.739 34.615 0.00 0.00 0.00 2.85
1865 2237 4.082245 ACAAGACTTGTCACCCAAAAACAG 60.082 41.667 15.23 0.00 40.56 3.16
1873 2246 6.575162 ATCAAAATACAAGACTTGTCACCC 57.425 37.500 23.79 0.00 44.12 4.61
1877 2250 8.559536 TGACTGAATCAAAATACAAGACTTGTC 58.440 33.333 23.79 7.43 38.61 3.18
1902 2275 1.261989 CGTTTTGATCGCCTGCATTG 58.738 50.000 0.00 0.00 0.00 2.82
1903 2276 0.881118 ACGTTTTGATCGCCTGCATT 59.119 45.000 0.00 0.00 0.00 3.56
1932 2305 3.136626 ACTCACATATCCTAGGCCAAACC 59.863 47.826 5.01 0.00 39.61 3.27
1953 2326 4.552572 GCAAAAAGCTTTGGTGCATTGTAC 60.553 41.667 29.61 10.37 41.96 2.90
1977 2350 2.638480 TGGTGTCCTTCTCAACAAGG 57.362 50.000 0.00 0.00 44.09 3.61
2002 2375 6.664515 TGCCAAAAACTCTTTCTAATGTACG 58.335 36.000 0.00 0.00 0.00 3.67
2009 2382 6.239008 CCTCAACATGCCAAAAACTCTTTCTA 60.239 38.462 0.00 0.00 0.00 2.10
2029 2402 6.428083 TTTCTGTCACATACTTACCCTCAA 57.572 37.500 0.00 0.00 0.00 3.02
2044 2417 7.230747 TGGTATGAATCCTTCTTTTTCTGTCA 58.769 34.615 0.00 0.00 0.00 3.58
2051 2424 8.655935 ACAGATTTGGTATGAATCCTTCTTTT 57.344 30.769 0.00 0.00 34.74 2.27
2052 2425 9.927081 ATACAGATTTGGTATGAATCCTTCTTT 57.073 29.630 0.00 0.00 34.74 2.52
2067 2440 4.581824 CCACTTCCCATCATACAGATTTGG 59.418 45.833 0.00 0.00 33.72 3.28
2071 2444 4.302067 AGTCCACTTCCCATCATACAGAT 58.698 43.478 0.00 0.00 37.48 2.90
2075 2448 6.357367 ACAATTAGTCCACTTCCCATCATAC 58.643 40.000 0.00 0.00 0.00 2.39
2079 2452 6.590234 AAAACAATTAGTCCACTTCCCATC 57.410 37.500 0.00 0.00 0.00 3.51
2090 2463 9.368921 GCTGCACAAAAATAAAAACAATTAGTC 57.631 29.630 0.00 0.00 0.00 2.59
2096 2469 5.065731 CCAGGCTGCACAAAAATAAAAACAA 59.934 36.000 9.56 0.00 0.00 2.83
2098 2471 4.574421 ACCAGGCTGCACAAAAATAAAAAC 59.426 37.500 9.56 0.00 0.00 2.43
2099 2472 4.574013 CACCAGGCTGCACAAAAATAAAAA 59.426 37.500 9.56 0.00 0.00 1.94
2100 2473 4.125703 CACCAGGCTGCACAAAAATAAAA 58.874 39.130 9.56 0.00 0.00 1.52
2134 2507 4.679373 TCTGCCTCTTAAGATTGGCTAG 57.321 45.455 27.09 22.48 45.11 3.42
2145 2518 0.108804 CCGTTCGCTTCTGCCTCTTA 60.109 55.000 0.00 0.00 35.36 2.10
2170 2543 3.393089 AACTGTTCGAAGCTGTGATCT 57.607 42.857 0.00 0.00 0.00 2.75
2202 2575 1.609555 GATAGACGGACAGTAGCTGGG 59.390 57.143 0.00 0.00 35.51 4.45
2211 2584 0.668535 CCGCATCTGATAGACGGACA 59.331 55.000 16.52 0.00 46.71 4.02
2212 2585 3.481009 CCGCATCTGATAGACGGAC 57.519 57.895 16.52 0.00 46.71 4.79
2216 2589 4.233789 GACTTCATCCGCATCTGATAGAC 58.766 47.826 0.00 0.00 0.00 2.59
2229 2602 4.754114 GGAAGTGATAGCATGACTTCATCC 59.246 45.833 19.91 9.79 44.94 3.51
2245 2618 6.951062 TGATACATTGTTTGTTGGAAGTGA 57.049 33.333 0.00 0.00 39.87 3.41
2254 2627 8.314021 TGTCAGTCTAGATGATACATTGTTTGT 58.686 33.333 0.00 0.00 42.62 2.83
2277 2650 2.897350 GCCATAGTGGGCGCTGTC 60.897 66.667 7.64 0.00 45.40 3.51
2285 2658 5.825507 GCTTAAATCTTTCAGCCATAGTGG 58.174 41.667 0.00 0.00 41.55 4.00
2293 2666 3.861689 GTGCATGGCTTAAATCTTTCAGC 59.138 43.478 0.00 1.13 36.83 4.26
2299 2672 1.753073 GCCTGTGCATGGCTTAAATCT 59.247 47.619 21.64 0.00 46.38 2.40
2321 2694 2.816204 TGGCATGTCACCAATGTTTG 57.184 45.000 0.00 0.00 33.12 2.93
2323 2696 3.834489 TTTTGGCATGTCACCAATGTT 57.166 38.095 0.00 0.00 46.25 2.71
2325 2698 2.807392 GGTTTTTGGCATGTCACCAATG 59.193 45.455 0.00 0.00 46.25 2.82
2326 2699 2.437281 TGGTTTTTGGCATGTCACCAAT 59.563 40.909 0.00 0.00 46.25 3.16
2346 2731 2.026449 ACTTTCCATTCCAGAGAGCCTG 60.026 50.000 0.00 0.00 42.55 4.85
2404 2790 5.281693 TCAGTAATGTTTGAAGACATGCG 57.718 39.130 0.00 0.00 40.03 4.73
2457 2843 7.646314 CCTGTCAAATTCATTCATACATCCTC 58.354 38.462 0.00 0.00 0.00 3.71
2458 2844 6.040166 GCCTGTCAAATTCATTCATACATCCT 59.960 38.462 0.00 0.00 0.00 3.24
2459 2845 6.183360 TGCCTGTCAAATTCATTCATACATCC 60.183 38.462 0.00 0.00 0.00 3.51
2499 2890 3.429085 CTCCATACTTGCAATTGCGTTC 58.571 45.455 24.58 0.00 45.83 3.95
2523 2914 5.490139 TGTCATAAGCTAGCTTGCAATTC 57.510 39.130 34.98 20.78 37.47 2.17
2550 2941 6.183360 CGGTCCTTAGCTTCACTTATTCTAGT 60.183 42.308 0.00 0.00 0.00 2.57
2551 2942 6.039493 TCGGTCCTTAGCTTCACTTATTCTAG 59.961 42.308 0.00 0.00 0.00 2.43
2567 2958 3.527533 CCATCGAACATTTCGGTCCTTA 58.472 45.455 8.36 0.00 44.45 2.69
2568 2959 2.356135 CCATCGAACATTTCGGTCCTT 58.644 47.619 8.36 0.00 44.45 3.36
2617 3008 5.810074 GCTTAGTTGTCTTCTGAATCTCTCC 59.190 44.000 0.00 0.00 0.00 3.71
2640 3031 1.446907 AGTACAGCAATGTCAGCAGC 58.553 50.000 0.00 0.00 0.00 5.25
2654 3045 2.092646 AGAAGGTGGTTGTGCAAGTACA 60.093 45.455 0.00 0.00 0.00 2.90
2673 3064 3.192001 GCTTTCCAACATCATGCTCAAGA 59.808 43.478 0.00 0.00 0.00 3.02
2674 3065 3.057104 TGCTTTCCAACATCATGCTCAAG 60.057 43.478 0.00 0.00 0.00 3.02
2684 3075 1.340088 TGGCATGTGCTTTCCAACAT 58.660 45.000 4.84 0.00 41.70 2.71
2712 3103 7.975866 CATGTTTATCATGTTTAGGTGCTTC 57.024 36.000 0.00 0.00 46.18 3.86
2739 3130 5.620206 TGACTGAAATGCTAACCTGAAAGA 58.380 37.500 0.00 0.00 34.07 2.52
2755 3146 2.048222 CGCCCGAGCTTGACTGAA 60.048 61.111 1.22 0.00 36.60 3.02
2756 3147 2.989253 TCGCCCGAGCTTGACTGA 60.989 61.111 1.22 0.00 36.60 3.41
2757 3148 2.811317 GTCGCCCGAGCTTGACTG 60.811 66.667 1.22 0.00 36.60 3.51
2758 3149 2.992114 AGTCGCCCGAGCTTGACT 60.992 61.111 1.22 1.75 35.59 3.41
2759 3150 2.507324 GAGTCGCCCGAGCTTGAC 60.507 66.667 1.22 0.00 36.60 3.18
2760 3151 4.116328 CGAGTCGCCCGAGCTTGA 62.116 66.667 1.22 0.00 36.60 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.