Multiple sequence alignment - TraesCS6A01G193300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G193300 chr6A 100.000 3513 0 0 1 3513 268242390 268238878 0.000000e+00 6488.0
1 TraesCS6A01G193300 chr6A 81.250 112 15 6 3204 3312 444867309 444867417 6.250000e-13 86.1
2 TraesCS6A01G193300 chr6B 97.613 2053 42 3 1036 3087 317880329 317882375 0.000000e+00 3513.0
3 TraesCS6A01G193300 chr6B 94.645 803 37 4 1 799 257596288 257597088 0.000000e+00 1240.0
4 TraesCS6A01G193300 chr6B 91.686 433 24 8 3087 3512 317882464 317882891 1.090000e-164 590.0
5 TraesCS6A01G193300 chr6B 92.254 142 9 2 806 946 317879815 317879955 2.140000e-47 200.0
6 TraesCS6A01G193300 chr2A 95.244 799 34 2 1 796 592831351 592830554 0.000000e+00 1262.0
7 TraesCS6A01G193300 chr2A 94.869 799 37 2 1 796 641598959 641599756 0.000000e+00 1245.0
8 TraesCS6A01G193300 chr4A 94.875 800 37 2 1 797 583935030 583935828 0.000000e+00 1247.0
9 TraesCS6A01G193300 chr1B 94.763 802 37 3 1 799 141756968 141756169 0.000000e+00 1243.0
10 TraesCS6A01G193300 chr1B 94.638 802 39 2 1 799 340460424 340459624 0.000000e+00 1240.0
11 TraesCS6A01G193300 chr1B 94.212 812 36 7 3 809 636032823 636032018 0.000000e+00 1229.0
12 TraesCS6A01G193300 chr4D 94.763 802 34 6 1 795 498606758 498607558 0.000000e+00 1242.0
13 TraesCS6A01G193300 chr2B 94.757 801 36 4 1 797 25740854 25740056 0.000000e+00 1242.0
14 TraesCS6A01G193300 chr7B 77.215 395 56 24 3133 3502 456032862 456033247 2.140000e-47 200.0
15 TraesCS6A01G193300 chr3A 77.578 223 33 11 3197 3413 584127090 584126879 6.160000e-23 119.0
16 TraesCS6A01G193300 chrUn 76.471 238 37 15 3118 3342 267472972 267472741 1.030000e-20 111.0
17 TraesCS6A01G193300 chr3B 76.050 238 32 14 3182 3412 580888030 580887811 2.230000e-17 100.0
18 TraesCS6A01G193300 chr7A 83.168 101 12 5 3172 3272 3972504 3972599 1.740000e-13 87.9
19 TraesCS6A01G193300 chr6D 82.353 102 17 1 3204 3305 307782565 307782665 1.740000e-13 87.9
20 TraesCS6A01G193300 chr1A 74.869 191 32 12 3231 3412 547952871 547952688 4.860000e-09 73.1
21 TraesCS6A01G193300 chr3D 85.484 62 7 2 3277 3336 419514892 419514831 2.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G193300 chr6A 268238878 268242390 3512 True 6488.000000 6488 100.000 1 3513 1 chr6A.!!$R1 3512
1 TraesCS6A01G193300 chr6B 317879815 317882891 3076 False 1434.333333 3513 93.851 806 3512 3 chr6B.!!$F2 2706
2 TraesCS6A01G193300 chr6B 257596288 257597088 800 False 1240.000000 1240 94.645 1 799 1 chr6B.!!$F1 798
3 TraesCS6A01G193300 chr2A 592830554 592831351 797 True 1262.000000 1262 95.244 1 796 1 chr2A.!!$R1 795
4 TraesCS6A01G193300 chr2A 641598959 641599756 797 False 1245.000000 1245 94.869 1 796 1 chr2A.!!$F1 795
5 TraesCS6A01G193300 chr4A 583935030 583935828 798 False 1247.000000 1247 94.875 1 797 1 chr4A.!!$F1 796
6 TraesCS6A01G193300 chr1B 141756169 141756968 799 True 1243.000000 1243 94.763 1 799 1 chr1B.!!$R1 798
7 TraesCS6A01G193300 chr1B 340459624 340460424 800 True 1240.000000 1240 94.638 1 799 1 chr1B.!!$R2 798
8 TraesCS6A01G193300 chr1B 636032018 636032823 805 True 1229.000000 1229 94.212 3 809 1 chr1B.!!$R3 806
9 TraesCS6A01G193300 chr4D 498606758 498607558 800 False 1242.000000 1242 94.763 1 795 1 chr4D.!!$F1 794
10 TraesCS6A01G193300 chr2B 25740056 25740854 798 True 1242.000000 1242 94.757 1 797 1 chr2B.!!$R1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.029567 GAATCTCGTCGAGGTCGCAT 59.970 55.0 21.63 5.04 39.6 4.73 F
1031 1109 0.178068 CGTTCCCCATCTCATCCGTT 59.822 55.0 0.00 0.00 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2170 0.322098 CCTAACCAATGGTGTCGGCA 60.322 55.000 5.34 0.0 35.34 5.69 R
2737 3038 1.260297 GCAAACGGAACAAAATGGCAC 59.740 47.619 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.030488 CCTCGGGTCTGTTCGCTAGA 61.030 60.000 0.00 0.00 0.00 2.43
135 136 2.949644 CGGAATAAATTTCTCCGGGCTT 59.050 45.455 24.21 0.00 46.66 4.35
151 152 4.287781 TTCGTTCGCGGTCAGGCA 62.288 61.111 6.13 0.00 41.70 4.75
186 187 1.192146 TCTAGGAGCCAGCGGTGTTT 61.192 55.000 14.40 0.34 0.00 2.83
194 195 1.002134 CAGCGGTGTTTGGGGATCT 60.002 57.895 6.41 0.00 0.00 2.75
198 199 1.895020 CGGTGTTTGGGGATCTCCGA 61.895 60.000 7.25 1.00 39.52 4.55
215 216 1.428219 GAATCTCGTCGAGGTCGCA 59.572 57.895 21.63 2.65 39.60 5.10
216 217 0.029567 GAATCTCGTCGAGGTCGCAT 59.970 55.000 21.63 5.04 39.60 4.73
287 290 2.060383 CGATGGAGGCAGGGAGACA 61.060 63.158 0.00 0.00 0.00 3.41
356 359 2.124983 TTCCTCTGCGCTGATGCC 60.125 61.111 17.78 0.00 35.36 4.40
610 614 2.456119 GCGACTGGTTGCAGATCCG 61.456 63.158 7.97 0.00 39.74 4.18
710 717 3.518303 GGGTACTCTAGGTGTTCATGGTT 59.482 47.826 0.00 0.00 0.00 3.67
711 718 4.019591 GGGTACTCTAGGTGTTCATGGTTT 60.020 45.833 0.00 0.00 0.00 3.27
833 841 1.896660 AGGATGCGTGGCACGTTTT 60.897 52.632 36.68 23.32 44.73 2.43
861 869 0.609957 ATCAGGTGTGTGGCATGTGG 60.610 55.000 0.00 0.00 0.00 4.17
927 935 2.348243 CCGGTCCGTTTAGCCCAA 59.652 61.111 11.06 0.00 0.00 4.12
953 961 4.892965 TGCCAGCCCACGTTTGCT 62.893 61.111 2.80 2.80 38.67 3.91
954 962 2.671619 GCCAGCCCACGTTTGCTA 60.672 61.111 8.17 0.00 35.69 3.49
955 963 2.978018 GCCAGCCCACGTTTGCTAC 61.978 63.158 8.17 1.29 35.69 3.58
975 1053 0.615331 ACAGAACATCCTCACCGCAT 59.385 50.000 0.00 0.00 0.00 4.73
997 1075 2.266279 CCACTCTTCCCTTTCCCTGTA 58.734 52.381 0.00 0.00 0.00 2.74
998 1076 2.027100 CCACTCTTCCCTTTCCCTGTAC 60.027 54.545 0.00 0.00 0.00 2.90
999 1077 2.027100 CACTCTTCCCTTTCCCTGTACC 60.027 54.545 0.00 0.00 0.00 3.34
1000 1078 1.560146 CTCTTCCCTTTCCCTGTACCC 59.440 57.143 0.00 0.00 0.00 3.69
1001 1079 0.252197 CTTCCCTTTCCCTGTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
1002 1080 0.178897 TTCCCTTTCCCTGTACCCGA 60.179 55.000 0.00 0.00 0.00 5.14
1003 1081 0.178897 TCCCTTTCCCTGTACCCGAA 60.179 55.000 0.00 0.00 0.00 4.30
1004 1082 0.916809 CCCTTTCCCTGTACCCGAAT 59.083 55.000 0.00 0.00 0.00 3.34
1005 1083 1.134189 CCCTTTCCCTGTACCCGAATC 60.134 57.143 0.00 0.00 0.00 2.52
1021 1099 2.550855 CGAATCATCATCCGTTCCCCAT 60.551 50.000 0.00 0.00 0.00 4.00
1022 1100 2.867109 ATCATCATCCGTTCCCCATC 57.133 50.000 0.00 0.00 0.00 3.51
1026 1104 1.806496 TCATCCGTTCCCCATCTCAT 58.194 50.000 0.00 0.00 0.00 2.90
1027 1105 1.694150 TCATCCGTTCCCCATCTCATC 59.306 52.381 0.00 0.00 0.00 2.92
1029 1107 1.069765 CCGTTCCCCATCTCATCCG 59.930 63.158 0.00 0.00 0.00 4.18
1030 1108 1.686325 CCGTTCCCCATCTCATCCGT 61.686 60.000 0.00 0.00 0.00 4.69
1031 1109 0.178068 CGTTCCCCATCTCATCCGTT 59.822 55.000 0.00 0.00 0.00 4.44
1032 1110 1.806623 CGTTCCCCATCTCATCCGTTC 60.807 57.143 0.00 0.00 0.00 3.95
1033 1111 0.837272 TTCCCCATCTCATCCGTTCC 59.163 55.000 0.00 0.00 0.00 3.62
1034 1112 1.054406 TCCCCATCTCATCCGTTCCC 61.054 60.000 0.00 0.00 0.00 3.97
1035 1113 1.056700 CCCCATCTCATCCGTTCCCT 61.057 60.000 0.00 0.00 0.00 4.20
1036 1114 0.839946 CCCATCTCATCCGTTCCCTT 59.160 55.000 0.00 0.00 0.00 3.95
1037 1115 1.475751 CCCATCTCATCCGTTCCCTTG 60.476 57.143 0.00 0.00 0.00 3.61
1111 1412 3.866582 GCGGATCAGGACCAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
1174 1475 0.767375 TCTATACCTACGAGGCCGGT 59.233 55.000 1.90 7.65 39.63 5.28
1357 1658 1.156736 CCACCAAGTCCATGTTCGTC 58.843 55.000 0.00 0.00 0.00 4.20
1702 2003 2.646930 CAGCTCATAGCCCATGACAAA 58.353 47.619 0.00 0.00 43.77 2.83
1795 2096 5.183228 GTGTTTGATCTTCGGGATAAGGAA 58.817 41.667 0.00 0.00 34.33 3.36
1869 2170 2.440599 GGATGGTGGGGCTGTGTT 59.559 61.111 0.00 0.00 0.00 3.32
2017 2318 2.184830 CCGCCATCATGCTCCTGTG 61.185 63.158 0.00 0.00 0.00 3.66
2026 2327 2.686405 TCATGCTCCTGTGAATGCAATC 59.314 45.455 0.00 0.00 38.96 2.67
2086 2387 1.364626 GGGATGACTCGCAAGCACTG 61.365 60.000 0.00 0.00 34.59 3.66
2137 2438 0.546122 ACAATAGCGGAGGCAATGGA 59.454 50.000 0.00 0.00 43.41 3.41
2143 2444 1.037030 GCGGAGGCAATGGAAATGGA 61.037 55.000 0.00 0.00 39.62 3.41
2144 2445 1.473258 CGGAGGCAATGGAAATGGAA 58.527 50.000 0.00 0.00 0.00 3.53
2145 2446 1.824230 CGGAGGCAATGGAAATGGAAA 59.176 47.619 0.00 0.00 0.00 3.13
2146 2447 2.431782 CGGAGGCAATGGAAATGGAAAT 59.568 45.455 0.00 0.00 0.00 2.17
2147 2448 3.738899 CGGAGGCAATGGAAATGGAAATG 60.739 47.826 0.00 0.00 0.00 2.32
2148 2449 3.432608 GGAGGCAATGGAAATGGAAATGG 60.433 47.826 0.00 0.00 0.00 3.16
2269 2570 1.271871 CCTGACTGGGTTGCCATTGTA 60.272 52.381 0.00 0.00 0.00 2.41
2389 2690 0.329596 AGTTCAGGCAATGGGAGGAC 59.670 55.000 0.00 0.00 0.00 3.85
2425 2726 5.956068 TTGCTTTAGTGATGTATGTTGCA 57.044 34.783 0.00 0.00 0.00 4.08
2426 2727 5.550232 TGCTTTAGTGATGTATGTTGCAG 57.450 39.130 0.00 0.00 0.00 4.41
2455 2756 2.195741 ATGTGTGCTGAGTTGCTGAT 57.804 45.000 0.00 0.00 0.00 2.90
2623 2924 4.448395 GCTTATTGCTGCAATTGTCACAAA 59.552 37.500 30.35 16.51 35.54 2.83
2639 2940 5.124617 TGTCACAAATTTCTGTGTGTGCTTA 59.875 36.000 9.51 0.00 45.70 3.09
2666 2967 7.505585 TGTTGTTTCAGTCCCTTCATATCTTTT 59.494 33.333 0.00 0.00 0.00 2.27
2751 3052 2.034053 TGAACTCGTGCCATTTTGTTCC 59.966 45.455 0.00 0.00 34.63 3.62
2784 3085 9.975218 ATCCCATTACTCATTGTTTAGTTAGTT 57.025 29.630 0.00 0.00 0.00 2.24
2804 3105 6.808321 AGTTGGTAGAATATTAGCTGGTGA 57.192 37.500 0.00 0.00 0.00 4.02
2850 3151 4.844349 ATTGCTGGTGTAGGTGACTTAT 57.156 40.909 0.00 0.00 43.67 1.73
2888 3189 3.485947 TGGCTTATGTTGATTTGACGC 57.514 42.857 0.00 0.00 0.00 5.19
2958 3260 6.280643 ACAGTTTCCACTTTGGCTTTATTTC 58.719 36.000 0.00 0.00 37.47 2.17
2985 3287 6.621316 TTACCTCTAGTATTTGAGCTCTCG 57.379 41.667 16.19 0.00 0.00 4.04
3066 3368 6.002704 ACAAGAAAGAAATGAGTGCATCTCT 58.997 36.000 14.60 0.00 43.13 3.10
3075 3377 3.291584 TGAGTGCATCTCTAGAATCGGT 58.708 45.455 14.60 0.00 43.13 4.69
3153 3544 0.322277 CTTGAGCTCACATGCACCCT 60.322 55.000 18.03 0.00 34.99 4.34
3171 3562 6.526414 GCACCCTTTTGCAACAGTAAATCTG 61.526 44.000 11.49 0.00 44.44 2.90
3267 3662 1.804151 ACGGTGAAATGACATTCGTGG 59.196 47.619 10.72 0.02 33.89 4.94
3271 3666 3.074412 GTGAAATGACATTCGTGGAGGT 58.926 45.455 0.05 0.00 31.80 3.85
3327 3724 1.270550 ACTTTGGAAGCATTTGGAGCG 59.729 47.619 0.00 0.00 37.01 5.03
3330 3727 2.192664 TGGAAGCATTTGGAGCGTTA 57.807 45.000 0.00 0.00 37.01 3.18
3383 3781 8.886719 TGTTATTTCATCACAAAAATTTGCACA 58.113 25.926 5.82 0.00 41.79 4.57
3391 3789 6.018588 ATCACAAAAATTTGCACACATGTGAG 60.019 34.615 31.94 24.64 46.08 3.51
3417 3815 5.348164 ACACTTCAATGTTTGTTGCTAACC 58.652 37.500 0.00 0.00 0.00 2.85
3476 3874 3.581024 TCGGATTTTACTGTAGCACGT 57.419 42.857 0.00 0.00 0.00 4.49
3480 3878 3.062234 GGATTTTACTGTAGCACGTGAGC 59.938 47.826 22.23 4.36 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.707200 GAGGTTCCCTCTCCCTCCT 59.293 63.158 2.98 0.00 46.41 3.69
50 51 1.913419 CTAACCCTACCACACACCCAT 59.087 52.381 0.00 0.00 0.00 4.00
135 136 4.287781 TTGCCTGACCGCGAACGA 62.288 61.111 8.23 0.00 43.93 3.85
186 187 0.106167 ACGAGATTCGGAGATCCCCA 60.106 55.000 3.37 0.00 45.59 4.96
194 195 1.426816 CGACCTCGACGAGATTCGGA 61.427 60.000 27.63 0.00 45.59 4.55
198 199 0.248661 CATGCGACCTCGACGAGATT 60.249 55.000 26.11 12.31 43.02 2.40
215 216 1.212935 GACCTCCAACCACCATAGCAT 59.787 52.381 0.00 0.00 0.00 3.79
216 217 0.618458 GACCTCCAACCACCATAGCA 59.382 55.000 0.00 0.00 0.00 3.49
287 290 5.360999 CCAACAAGGAAGAAGAAAGGTCTTT 59.639 40.000 0.00 0.00 41.54 2.52
356 359 0.745845 CAAAGCAGGATCTCCCACCG 60.746 60.000 0.00 0.00 37.41 4.94
479 482 1.714899 AACACACCTGCAACAGTCGC 61.715 55.000 0.00 0.00 0.00 5.19
610 614 1.376553 GAAGACCCCTGCAGCAGAC 60.377 63.158 24.90 11.64 32.44 3.51
710 717 4.384247 CACTCTGAAACGCAAACACAAAAA 59.616 37.500 0.00 0.00 0.00 1.94
711 718 3.917380 CACTCTGAAACGCAAACACAAAA 59.083 39.130 0.00 0.00 0.00 2.44
730 737 3.646637 AGTAGTTGACCCTTACAAGCACT 59.353 43.478 0.00 0.00 0.00 4.40
840 848 1.200716 CACATGCCACACACCTGATTC 59.799 52.381 0.00 0.00 0.00 2.52
946 954 3.067106 AGGATGTTCTGTGTAGCAAACG 58.933 45.455 0.00 0.00 0.00 3.60
947 955 4.065088 TGAGGATGTTCTGTGTAGCAAAC 58.935 43.478 0.00 0.00 0.00 2.93
949 957 3.557054 GGTGAGGATGTTCTGTGTAGCAA 60.557 47.826 0.00 0.00 0.00 3.91
950 958 2.028112 GGTGAGGATGTTCTGTGTAGCA 60.028 50.000 0.00 0.00 0.00 3.49
951 959 2.622436 GGTGAGGATGTTCTGTGTAGC 58.378 52.381 0.00 0.00 0.00 3.58
953 961 1.067142 GCGGTGAGGATGTTCTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
954 962 0.320771 GCGGTGAGGATGTTCTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
955 963 0.320683 TGCGGTGAGGATGTTCTGTG 60.321 55.000 0.00 0.00 0.00 3.66
975 1053 2.266279 CAGGGAAAGGGAAGAGTGGTA 58.734 52.381 0.00 0.00 0.00 3.25
997 1075 1.202651 GGAACGGATGATGATTCGGGT 60.203 52.381 0.00 0.00 34.53 5.28
998 1076 1.512926 GGAACGGATGATGATTCGGG 58.487 55.000 0.00 0.00 34.53 5.14
999 1077 1.512926 GGGAACGGATGATGATTCGG 58.487 55.000 0.00 0.00 34.53 4.30
1000 1078 1.202639 TGGGGAACGGATGATGATTCG 60.203 52.381 0.00 0.00 36.55 3.34
1001 1079 2.638480 TGGGGAACGGATGATGATTC 57.362 50.000 0.00 0.00 0.00 2.52
1002 1080 2.713167 AGATGGGGAACGGATGATGATT 59.287 45.455 0.00 0.00 0.00 2.57
1003 1081 2.304180 GAGATGGGGAACGGATGATGAT 59.696 50.000 0.00 0.00 0.00 2.45
1004 1082 1.694150 GAGATGGGGAACGGATGATGA 59.306 52.381 0.00 0.00 0.00 2.92
1005 1083 1.417517 TGAGATGGGGAACGGATGATG 59.582 52.381 0.00 0.00 0.00 3.07
1021 1099 2.103373 CTCTCAAGGGAACGGATGAGA 58.897 52.381 4.47 4.47 42.80 3.27
1022 1100 1.472376 GCTCTCAAGGGAACGGATGAG 60.472 57.143 0.00 0.00 39.91 2.90
1026 1104 1.975327 CAGCTCTCAAGGGAACGGA 59.025 57.895 0.00 0.00 0.00 4.69
1027 1105 1.743252 GCAGCTCTCAAGGGAACGG 60.743 63.158 0.00 0.00 0.00 4.44
1029 1107 1.304509 GCTGCAGCTCTCAAGGGAAC 61.305 60.000 31.33 0.00 38.21 3.62
1030 1108 1.002868 GCTGCAGCTCTCAAGGGAA 60.003 57.895 31.33 0.00 38.21 3.97
1031 1109 2.667418 GCTGCAGCTCTCAAGGGA 59.333 61.111 31.33 0.00 38.21 4.20
1032 1110 2.818714 CGCTGCAGCTCTCAAGGG 60.819 66.667 34.22 14.00 39.32 3.95
1033 1111 2.818714 CCGCTGCAGCTCTCAAGG 60.819 66.667 34.22 23.25 39.32 3.61
1034 1112 3.497932 GCCGCTGCAGCTCTCAAG 61.498 66.667 34.22 18.46 39.32 3.02
1083 1384 4.626081 GATCCGCCCACCCATCGG 62.626 72.222 0.00 0.00 44.16 4.18
1141 1442 2.162008 GGTATAGATCTCCGACCGCTTC 59.838 54.545 0.00 0.00 0.00 3.86
1174 1475 3.196901 AGTTCATACCGTAGATGTGCCAA 59.803 43.478 0.00 0.00 0.00 4.52
1456 1757 1.971167 GCCATTGTTGGAGTCGGCA 60.971 57.895 0.00 0.00 46.92 5.69
1702 2003 3.505386 CCAGGCTATGTCATAGACCTCT 58.495 50.000 20.28 9.85 42.04 3.69
1795 2096 7.134362 ACTCTCATAGATGATTGTGGAATGT 57.866 36.000 0.00 0.00 36.02 2.71
1869 2170 0.322098 CCTAACCAATGGTGTCGGCA 60.322 55.000 5.34 0.00 35.34 5.69
2086 2387 2.704190 TGGAGGAGAGGTCCCATATC 57.296 55.000 0.00 0.00 45.26 1.63
2137 2438 2.361789 GCAGCATTGCCATTTCCATTT 58.638 42.857 4.70 0.00 44.74 2.32
2269 2570 4.641989 AGAATCTGCAGTTTATTGGCGAAT 59.358 37.500 14.67 0.00 0.00 3.34
2325 2626 1.693640 CCTCTTTCTGCCCCACCAT 59.306 57.895 0.00 0.00 0.00 3.55
2389 2690 6.419413 TCACTAAAGCAAAAGCAAAATTACCG 59.581 34.615 0.00 0.00 0.00 4.02
2409 2710 4.081476 AGCTGTCTGCAACATACATCACTA 60.081 41.667 4.39 0.00 45.94 2.74
2425 2726 2.902523 CAGCACACATATCAGCTGTCT 58.097 47.619 14.67 5.18 46.92 3.41
2455 2756 8.603898 TTCTACCTAGTGAACCATCATTTCTA 57.396 34.615 0.00 0.00 38.01 2.10
2537 2838 6.714810 ACAGCAATTTAGTTCAGTATCACCAA 59.285 34.615 0.00 0.00 0.00 3.67
2623 2924 5.772825 ACAACATAAGCACACACAGAAAT 57.227 34.783 0.00 0.00 0.00 2.17
2639 2940 6.725364 AGATATGAAGGGACTGAAACAACAT 58.275 36.000 0.00 0.00 40.86 2.71
2666 2967 8.902806 CCCTAAATACAAAAATGATACAGCAGA 58.097 33.333 0.00 0.00 0.00 4.26
2737 3038 1.260297 GCAAACGGAACAAAATGGCAC 59.740 47.619 0.00 0.00 0.00 5.01
2751 3052 4.142403 ACAATGAGTAATGGGATGCAAACG 60.142 41.667 0.00 0.00 0.00 3.60
2784 3085 9.944376 GATAAATCACCAGCTAATATTCTACCA 57.056 33.333 0.00 0.00 0.00 3.25
2804 3105 7.387265 AGGAACCCAAAAACAAAGGATAAAT 57.613 32.000 0.00 0.00 0.00 1.40
2815 3116 3.323691 ACCAGCAATAGGAACCCAAAAAC 59.676 43.478 0.00 0.00 0.00 2.43
2850 3151 8.849168 CATAAGCCATTTCTTATCAACCACATA 58.151 33.333 0.00 0.00 37.20 2.29
2888 3189 2.559668 TGGCTTTTCCATTTCTCTGCTG 59.440 45.455 0.00 0.00 40.72 4.41
2915 3216 5.826643 ACTGTATATTTGCCTTCCTTGGAA 58.173 37.500 1.86 1.86 0.00 3.53
2922 3224 6.759497 AGTGGAAACTGTATATTTGCCTTC 57.241 37.500 0.00 0.00 0.00 3.46
2958 3260 7.777095 AGAGCTCAAATACTAGAGGTAAACTG 58.223 38.462 17.77 0.00 42.15 3.16
3031 3333 5.924475 TTTCTTTCTTGTCTAGCCGAAAG 57.076 39.130 12.60 12.60 42.11 2.62
3148 3539 4.984161 CAGATTTACTGTTGCAAAAGGGTG 59.016 41.667 20.72 4.96 41.30 4.61
3150 3541 5.452078 TCAGATTTACTGTTGCAAAAGGG 57.548 39.130 20.72 4.82 45.86 3.95
3267 3662 4.759516 TTATTTGTTTTGCTCGGACCTC 57.240 40.909 0.00 0.00 0.00 3.85
3271 3666 7.359933 GCATCAATTTTATTTGTTTTGCTCGGA 60.360 33.333 0.00 0.00 31.61 4.55
3370 3768 5.970140 TCTCACATGTGTGCAAATTTTTG 57.030 34.783 24.63 0.00 45.25 2.44
3383 3781 6.753279 CAAACATTGAAGTGTTTCTCACATGT 59.247 34.615 0.00 0.00 46.32 3.21
3391 3789 7.391016 GTTAGCAACAAACATTGAAGTGTTTC 58.609 34.615 1.38 0.00 46.32 2.78
3476 3874 0.972134 CTCTTGTGAGGTGGAGCTCA 59.028 55.000 17.19 4.42 36.70 4.26
3480 3878 0.683973 AGTGCTCTTGTGAGGTGGAG 59.316 55.000 0.00 0.00 40.53 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.