Multiple sequence alignment - TraesCS6A01G190800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G190800 chr6A 100.000 7422 0 0 1 7422 255325076 255317655 0.000000e+00 13706.0
1 TraesCS6A01G190800 chr6D 97.384 4319 91 8 321 4629 199145186 199149492 0.000000e+00 7330.0
2 TraesCS6A01G190800 chr6D 97.979 1633 33 0 4806 6438 199150283 199151915 0.000000e+00 2833.0
3 TraesCS6A01G190800 chr6D 95.872 436 16 1 6719 7152 199151913 199152348 0.000000e+00 704.0
4 TraesCS6A01G190800 chr6D 98.689 305 4 0 1 305 199144898 199145202 6.550000e-150 542.0
5 TraesCS6A01G190800 chr6D 84.588 558 67 15 5782 6324 79615623 79615070 3.050000e-148 536.0
6 TraesCS6A01G190800 chr6D 97.838 185 1 1 4628 4809 199149809 199149993 4.320000e-82 316.0
7 TraesCS6A01G190800 chr6D 88.268 179 12 3 7247 7422 199152332 199152504 9.760000e-49 206.0
8 TraesCS6A01G190800 chr6D 84.507 71 10 1 1712 1781 27973326 27973256 1.340000e-07 69.4
9 TraesCS6A01G190800 chr6B 95.341 4400 143 19 889 5266 320551967 320556326 0.000000e+00 6933.0
10 TraesCS6A01G190800 chr6B 96.581 702 17 2 5744 6438 320556696 320557397 0.000000e+00 1157.0
11 TraesCS6A01G190800 chr6B 96.667 570 11 1 321 890 320551377 320551938 0.000000e+00 941.0
12 TraesCS6A01G190800 chr6B 96.257 374 12 1 5302 5673 320556327 320556700 4.920000e-171 612.0
13 TraesCS6A01G190800 chr6B 96.721 305 9 1 1 305 320551090 320551393 2.390000e-139 507.0
14 TraesCS6A01G190800 chr6B 91.701 241 20 0 6901 7141 320609138 320609378 1.190000e-87 335.0
15 TraesCS6A01G190800 chr6B 95.082 183 7 1 6719 6899 320557395 320557577 3.390000e-73 287.0
16 TraesCS6A01G190800 chr6B 88.506 87 6 3 7160 7245 230629505 230629588 1.320000e-17 102.0
17 TraesCS6A01G190800 chr5D 82.973 693 84 28 5767 6438 478726894 478726215 4.960000e-166 595.0
18 TraesCS6A01G190800 chr5D 100.000 28 0 0 2 29 192551235 192551262 1.300000e-02 52.8
19 TraesCS6A01G190800 chr7A 96.140 285 8 1 6438 6719 714271955 714272239 5.250000e-126 462.0
20 TraesCS6A01G190800 chr5A 94.521 292 13 1 6436 6724 27512144 27511853 1.470000e-121 448.0
21 TraesCS6A01G190800 chr5A 87.500 88 10 1 7160 7247 241184433 241184519 4.740000e-17 100.0
22 TraesCS6A01G190800 chr3A 95.088 285 11 1 6438 6719 10595900 10595616 5.280000e-121 446.0
23 TraesCS6A01G190800 chr3A 94.138 290 13 2 6438 6723 119777992 119777703 8.840000e-119 438.0
24 TraesCS6A01G190800 chr3A 93.403 288 16 1 6436 6720 406306365 406306652 2.480000e-114 424.0
25 TraesCS6A01G190800 chr1A 94.386 285 13 1 6438 6719 431504524 431504240 1.140000e-117 435.0
26 TraesCS6A01G190800 chr1A 85.987 157 16 4 5891 6047 82128124 82128274 5.960000e-36 163.0
27 TraesCS6A01G190800 chr1A 90.909 66 6 0 5768 5833 82128060 82128125 1.030000e-13 89.8
28 TraesCS6A01G190800 chr2A 93.684 285 15 3 6438 6719 714032392 714032676 2.480000e-114 424.0
29 TraesCS6A01G190800 chr2D 91.639 299 21 4 6428 6722 316505662 316505960 1.930000e-110 411.0
30 TraesCS6A01G190800 chr2D 90.361 83 6 2 7172 7253 547490975 547491056 2.830000e-19 108.0
31 TraesCS6A01G190800 chr1D 92.281 285 19 1 6438 6719 338933152 338932868 1.160000e-107 401.0
32 TraesCS6A01G190800 chr1D 100.000 31 0 0 1 31 488963025 488963055 2.890000e-04 58.4
33 TraesCS6A01G190800 chr7D 81.221 426 56 19 6032 6438 1732633 1732213 9.290000e-84 322.0
34 TraesCS6A01G190800 chr7D 86.667 135 18 0 5767 5901 1732771 1732637 4.640000e-32 150.0
35 TraesCS6A01G190800 chr3B 93.671 79 4 1 7171 7248 30520861 30520783 4.700000e-22 117.0
36 TraesCS6A01G190800 chr5B 91.139 79 4 2 7171 7248 17550161 17550085 3.660000e-18 104.0
37 TraesCS6A01G190800 chr5B 100.000 29 0 0 1 29 602263915 602263887 4.000000e-03 54.7
38 TraesCS6A01G190800 chr4B 91.026 78 5 2 7171 7247 32250079 32250155 3.660000e-18 104.0
39 TraesCS6A01G190800 chr4B 86.667 90 9 3 7160 7247 71798557 71798469 6.130000e-16 97.1
40 TraesCS6A01G190800 chr4B 100.000 29 0 0 1 29 7475869 7475897 4.000000e-03 54.7
41 TraesCS6A01G190800 chr4A 87.912 91 8 2 7160 7249 430870615 430870527 3.660000e-18 104.0
42 TraesCS6A01G190800 chr7B 90.123 81 5 2 7171 7250 630555255 630555177 1.320000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G190800 chr6A 255317655 255325076 7421 True 13706.0 13706 100.000000 1 7422 1 chr6A.!!$R1 7421
1 TraesCS6A01G190800 chr6D 199144898 199152504 7606 False 1988.5 7330 96.005000 1 7422 6 chr6D.!!$F1 7421
2 TraesCS6A01G190800 chr6D 79615070 79615623 553 True 536.0 536 84.588000 5782 6324 1 chr6D.!!$R2 542
3 TraesCS6A01G190800 chr6B 320551090 320557577 6487 False 1739.5 6933 96.108167 1 6899 6 chr6B.!!$F3 6898
4 TraesCS6A01G190800 chr5D 478726215 478726894 679 True 595.0 595 82.973000 5767 6438 1 chr5D.!!$R1 671
5 TraesCS6A01G190800 chr7D 1732213 1732771 558 True 236.0 322 83.944000 5767 6438 2 chr7D.!!$R1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 971 0.108138 AAGCCCATGTACAGCGACTC 60.108 55.000 0.33 0.0 0.00 3.36 F
2381 2430 0.250727 AGTCACCCGGAACACCATTG 60.251 55.000 0.73 0.0 0.00 2.82 F
3359 3410 1.141053 GATATGGCGGGAACAAGGACT 59.859 52.381 0.00 0.0 0.00 3.85 F
4049 4101 0.742281 CCAGCCGTCTGACATTCCAG 60.742 60.000 8.73 0.0 42.95 3.86 F
4295 4347 2.489938 AAGCAAAAGATAGGCCGACA 57.510 45.000 0.00 0.0 0.00 4.35 F
5329 5995 1.877443 GGTGCTTGACGTGGTTGTAAT 59.123 47.619 0.00 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2873 2922 1.039233 CCCAAATCATCGGGCTTGCT 61.039 55.0 0.00 0.00 35.09 3.91 R
4049 4101 0.393537 CCACCCTGTCAATCTGCTCC 60.394 60.0 0.00 0.00 0.00 4.70 R
4295 4347 1.442769 CTGCCACACGCTTAAGTGAT 58.557 50.0 22.48 7.33 44.43 3.06 R
5291 5957 2.039084 CACCCTAGAGTCTTGTTGCCTT 59.961 50.0 0.00 0.00 0.00 4.35 R
6091 6772 0.804156 GGTGCCACAACCAAAACACG 60.804 55.0 0.00 0.00 40.22 4.49 R
7150 7860 0.107508 AACCCATGCATCGGACAGAG 60.108 55.0 18.03 2.71 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.750352 ACGGAGGGAGTATTTAACAAAGA 57.250 39.130 0.00 0.00 0.00 2.52
292 293 3.062504 CCGCCTAAAAATTTGCTCATTGC 59.937 43.478 0.00 0.00 43.25 3.56
304 305 3.438297 GCTCATTGCAGATCATTGCTT 57.562 42.857 8.27 0.00 44.38 3.91
305 306 3.782046 GCTCATTGCAGATCATTGCTTT 58.218 40.909 8.27 0.00 44.38 3.51
306 307 4.181578 GCTCATTGCAGATCATTGCTTTT 58.818 39.130 8.27 0.00 44.38 2.27
307 308 4.630069 GCTCATTGCAGATCATTGCTTTTT 59.370 37.500 8.27 0.00 44.38 1.94
428 429 8.518430 ACAATAGGACACATGCATATAACAAA 57.482 30.769 0.00 0.00 0.00 2.83
698 699 2.907458 TCTCCACCTCACTCAGATCA 57.093 50.000 0.00 0.00 0.00 2.92
869 870 4.202264 GGGAGAAGAAGAAGAATATGCCGA 60.202 45.833 0.00 0.00 0.00 5.54
940 971 0.108138 AAGCCCATGTACAGCGACTC 60.108 55.000 0.33 0.00 0.00 3.36
1163 1194 4.351054 CCCCCTTGCACGCTTCCT 62.351 66.667 0.00 0.00 0.00 3.36
1355 1386 2.573869 GTACGCTCTGCAGCTCCA 59.426 61.111 9.47 0.00 44.40 3.86
1449 1480 5.295787 CCTGCCTATTTTAGTTCATGCGTAA 59.704 40.000 0.00 0.00 0.00 3.18
1702 1741 0.538746 CCAAGGCCGGTTACAAGGTT 60.539 55.000 1.90 0.00 0.00 3.50
1730 1769 6.599244 CCAGAAGTTACATAGGAATGCAAGAA 59.401 38.462 0.00 0.00 36.50 2.52
1732 1771 7.119699 CAGAAGTTACATAGGAATGCAAGAACA 59.880 37.037 0.00 0.00 36.50 3.18
1871 1910 7.124599 TGGATATCAAGGTGATGAAATGCTTTT 59.875 33.333 4.83 0.00 37.70 2.27
1872 1911 7.650903 GGATATCAAGGTGATGAAATGCTTTTC 59.349 37.037 16.10 16.10 37.70 2.29
1880 1919 5.809051 GTGATGAAATGCTTTTCCATTCCTC 59.191 40.000 19.16 9.06 40.49 3.71
1882 1921 4.078537 TGAAATGCTTTTCCATTCCTCGA 58.921 39.130 19.16 0.00 40.49 4.04
2100 2139 4.078363 ACGTAAATTCATCGGCACAAAG 57.922 40.909 0.00 0.00 0.00 2.77
2200 2239 2.879907 CAGTTGCCTTGGCGATGG 59.120 61.111 4.73 0.00 0.00 3.51
2281 2320 4.079958 GGTGAAGTAGGTGGGAATTATGGT 60.080 45.833 0.00 0.00 0.00 3.55
2366 2415 6.068010 ACCATTTTTGTAGTTGATCCAGTCA 58.932 36.000 0.00 0.00 34.25 3.41
2381 2430 0.250727 AGTCACCCGGAACACCATTG 60.251 55.000 0.73 0.00 0.00 2.82
2511 2560 1.992557 AGGGGATTAGTGGTTTGAGCA 59.007 47.619 0.00 0.00 0.00 4.26
2554 2603 1.735700 CGCTTTGATCCGACAGTGCTA 60.736 52.381 0.00 0.00 0.00 3.49
2662 2711 2.101415 GGCCTGCAAGTGAAAGAAGTTT 59.899 45.455 0.00 0.00 0.00 2.66
2703 2752 7.020827 TGATTGGTTTTAGGAGAGACAAGAT 57.979 36.000 0.00 0.00 0.00 2.40
2747 2796 1.301623 CCATTGGGACGTGGGCTTA 59.698 57.895 0.00 0.00 33.81 3.09
2812 2861 3.525609 TGGATAAAGGTGTAGCCATGGAA 59.474 43.478 18.40 0.00 34.63 3.53
2813 2862 4.167892 TGGATAAAGGTGTAGCCATGGAAT 59.832 41.667 18.40 5.40 34.63 3.01
2888 2937 1.486310 TGTCTAGCAAGCCCGATGATT 59.514 47.619 0.00 0.00 0.00 2.57
2977 3026 3.191371 GGCGGAGACATGAAAGAATTTGT 59.809 43.478 0.00 0.00 33.59 2.83
3197 3248 3.732159 AGCCTGCTTAGGGTCCTAA 57.268 52.632 8.94 8.94 33.99 2.69
3271 3322 4.853142 TGGGCCGGCCGACTCTAT 62.853 66.667 38.22 0.00 36.85 1.98
3359 3410 1.141053 GATATGGCGGGAACAAGGACT 59.859 52.381 0.00 0.00 0.00 3.85
3584 3635 2.155279 GTCCTTGAAAGAGTTGGCCTC 58.845 52.381 3.32 0.00 40.80 4.70
3753 3804 4.647853 AGCATAGACATTGGTGATTGCAAT 59.352 37.500 12.83 12.83 0.00 3.56
3891 3942 3.300009 CCAATTGTTGTCAAGAGAACGC 58.700 45.455 4.43 0.00 37.39 4.84
4027 4079 2.142319 GTTGATGCATTTTTGCGGGTT 58.858 42.857 0.00 0.00 37.69 4.11
4049 4101 0.742281 CCAGCCGTCTGACATTCCAG 60.742 60.000 8.73 0.00 42.95 3.86
4254 4306 5.802821 GCCTAATAGTAGTAGTAGGACGCCT 60.803 48.000 27.64 3.87 46.05 5.52
4295 4347 2.489938 AAGCAAAAGATAGGCCGACA 57.510 45.000 0.00 0.00 0.00 4.35
5197 5863 6.017026 GGGTAAGAAAGACACTTGAAAGGAAG 60.017 42.308 0.00 0.00 0.00 3.46
5329 5995 1.877443 GGTGCTTGACGTGGTTGTAAT 59.123 47.619 0.00 0.00 0.00 1.89
5372 6040 6.867662 AACTGATTAGTTGACAGTGGAAAG 57.132 37.500 1.44 0.00 45.17 2.62
5466 6134 8.729756 CCATGTTCAGATTGTTTATGTGACTTA 58.270 33.333 0.00 0.00 36.36 2.24
5587 6255 9.452287 TGTTTCCATAAAGTAGGTAATGGTAAC 57.548 33.333 12.87 12.87 44.01 2.50
5728 6396 8.348507 GGAAATTCAAATTGTTTGCCACATAAA 58.651 29.630 0.00 0.00 40.43 1.40
5888 6557 8.580720 CCTATAGCATAACTATCAGTCTGTTGT 58.419 37.037 0.00 0.00 40.89 3.32
5889 6558 9.973450 CTATAGCATAACTATCAGTCTGTTGTT 57.027 33.333 0.00 6.46 40.89 2.83
6085 6766 8.060020 TCAAATTTCTTGCTGTCATTTTTACG 57.940 30.769 0.00 0.00 0.00 3.18
6091 6772 6.427150 TCTTGCTGTCATTTTTACGTCTTTC 58.573 36.000 0.00 0.00 0.00 2.62
6139 6827 5.512404 CCGGTGTGCTCAGGGATTTATATAA 60.512 44.000 0.00 0.00 0.00 0.98
6167 6855 1.002576 TGCAGCACGACAACTGAAATG 60.003 47.619 0.00 0.00 35.90 2.32
6314 7004 5.278463 GGCATTCTTCCGCACATTAATATGT 60.278 40.000 0.00 0.00 45.81 2.29
6376 7084 1.618837 AGCTCGAGCCTTAACTGAACA 59.381 47.619 32.94 0.00 43.38 3.18
6378 7086 2.610727 GCTCGAGCCTTAACTGAACAGT 60.611 50.000 27.22 1.32 38.03 3.55
6436 7144 4.968259 TGCTGCTCTAGTTTGTCCTTTTA 58.032 39.130 0.00 0.00 0.00 1.52
6437 7145 5.373222 TGCTGCTCTAGTTTGTCCTTTTAA 58.627 37.500 0.00 0.00 0.00 1.52
6438 7146 5.470098 TGCTGCTCTAGTTTGTCCTTTTAAG 59.530 40.000 0.00 0.00 0.00 1.85
6440 7148 6.347806 GCTGCTCTAGTTTGTCCTTTTAAGAC 60.348 42.308 0.00 0.00 34.72 3.01
6441 7149 6.827727 TGCTCTAGTTTGTCCTTTTAAGACT 58.172 36.000 0.00 0.00 35.21 3.24
6442 7150 7.959175 TGCTCTAGTTTGTCCTTTTAAGACTA 58.041 34.615 0.00 0.00 35.21 2.59
6443 7151 7.871463 TGCTCTAGTTTGTCCTTTTAAGACTAC 59.129 37.037 0.00 0.00 35.21 2.73
6444 7152 7.331440 GCTCTAGTTTGTCCTTTTAAGACTACC 59.669 40.741 0.00 0.00 35.21 3.18
6445 7153 7.674120 TCTAGTTTGTCCTTTTAAGACTACCC 58.326 38.462 0.00 0.00 35.21 3.69
6446 7154 6.256643 AGTTTGTCCTTTTAAGACTACCCA 57.743 37.500 0.00 0.00 35.21 4.51
6447 7155 6.060136 AGTTTGTCCTTTTAAGACTACCCAC 58.940 40.000 0.00 0.00 35.21 4.61
6448 7156 5.633655 TTGTCCTTTTAAGACTACCCACA 57.366 39.130 0.00 0.00 35.21 4.17
6449 7157 5.633655 TGTCCTTTTAAGACTACCCACAA 57.366 39.130 0.00 0.00 35.21 3.33
6450 7158 6.195600 TGTCCTTTTAAGACTACCCACAAT 57.804 37.500 0.00 0.00 35.21 2.71
6451 7159 6.001460 TGTCCTTTTAAGACTACCCACAATG 58.999 40.000 0.00 0.00 35.21 2.82
6452 7160 5.414765 GTCCTTTTAAGACTACCCACAATGG 59.585 44.000 0.00 0.00 37.25 3.16
6465 7173 4.503714 CCACAATGGGAGTAACATAGGT 57.496 45.455 0.00 0.00 32.67 3.08
6466 7174 5.623956 CCACAATGGGAGTAACATAGGTA 57.376 43.478 0.00 0.00 32.67 3.08
6467 7175 5.611374 CCACAATGGGAGTAACATAGGTAG 58.389 45.833 0.00 0.00 32.67 3.18
6468 7176 5.130477 CCACAATGGGAGTAACATAGGTAGT 59.870 44.000 0.00 0.00 32.67 2.73
6469 7177 6.325545 CCACAATGGGAGTAACATAGGTAGTA 59.674 42.308 0.00 0.00 32.67 1.82
6470 7178 7.147620 CCACAATGGGAGTAACATAGGTAGTAA 60.148 40.741 0.00 0.00 32.67 2.24
6471 7179 7.709613 CACAATGGGAGTAACATAGGTAGTAAC 59.290 40.741 0.00 0.00 0.00 2.50
6472 7180 7.400915 ACAATGGGAGTAACATAGGTAGTAACA 59.599 37.037 0.00 0.00 0.00 2.41
6473 7181 8.429641 CAATGGGAGTAACATAGGTAGTAACAT 58.570 37.037 0.00 0.00 0.00 2.71
6474 7182 7.592885 TGGGAGTAACATAGGTAGTAACATC 57.407 40.000 0.00 0.00 0.00 3.06
6475 7183 7.127405 TGGGAGTAACATAGGTAGTAACATCA 58.873 38.462 0.00 0.00 0.00 3.07
6476 7184 7.069085 TGGGAGTAACATAGGTAGTAACATCAC 59.931 40.741 0.00 0.00 0.00 3.06
6477 7185 7.069085 GGGAGTAACATAGGTAGTAACATCACA 59.931 40.741 0.00 0.00 0.00 3.58
6478 7186 8.639761 GGAGTAACATAGGTAGTAACATCACAT 58.360 37.037 0.00 0.00 0.00 3.21
6515 7223 9.941325 AAAATAGATGTGGCAAACAATAAATGA 57.059 25.926 0.00 0.00 43.61 2.57
6516 7224 9.941325 AAATAGATGTGGCAAACAATAAATGAA 57.059 25.926 0.00 0.00 43.61 2.57
6517 7225 9.590451 AATAGATGTGGCAAACAATAAATGAAG 57.410 29.630 0.00 0.00 43.61 3.02
6518 7226 7.230849 AGATGTGGCAAACAATAAATGAAGA 57.769 32.000 0.00 0.00 43.61 2.87
6519 7227 7.669427 AGATGTGGCAAACAATAAATGAAGAA 58.331 30.769 0.00 0.00 43.61 2.52
6520 7228 8.149647 AGATGTGGCAAACAATAAATGAAGAAA 58.850 29.630 0.00 0.00 43.61 2.52
6521 7229 7.712264 TGTGGCAAACAATAAATGAAGAAAG 57.288 32.000 0.00 0.00 35.24 2.62
6522 7230 7.495901 TGTGGCAAACAATAAATGAAGAAAGA 58.504 30.769 0.00 0.00 35.24 2.52
6523 7231 7.984050 TGTGGCAAACAATAAATGAAGAAAGAA 59.016 29.630 0.00 0.00 35.24 2.52
6524 7232 8.825745 GTGGCAAACAATAAATGAAGAAAGAAA 58.174 29.630 0.00 0.00 0.00 2.52
6525 7233 9.044150 TGGCAAACAATAAATGAAGAAAGAAAG 57.956 29.630 0.00 0.00 0.00 2.62
6526 7234 8.498358 GGCAAACAATAAATGAAGAAAGAAAGG 58.502 33.333 0.00 0.00 0.00 3.11
6527 7235 9.260002 GCAAACAATAAATGAAGAAAGAAAGGA 57.740 29.630 0.00 0.00 0.00 3.36
6538 7246 9.847224 ATGAAGAAAGAAAGGAAAGTAGTAACA 57.153 29.630 0.00 0.00 0.00 2.41
6539 7247 9.847224 TGAAGAAAGAAAGGAAAGTAGTAACAT 57.153 29.630 0.00 0.00 0.00 2.71
6590 7298 9.833917 ACATCATATATATCAAGGCAAGATGAG 57.166 33.333 16.40 0.13 34.73 2.90
6591 7299 9.833917 CATCATATATATCAAGGCAAGATGAGT 57.166 33.333 8.62 0.00 32.98 3.41
6593 7301 9.264653 TCATATATATCAAGGCAAGATGAGTCT 57.735 33.333 0.00 0.00 35.82 3.24
6599 7307 5.592054 TCAAGGCAAGATGAGTCTATAACG 58.408 41.667 0.00 0.00 33.30 3.18
6600 7308 5.127194 TCAAGGCAAGATGAGTCTATAACGT 59.873 40.000 0.00 0.00 33.30 3.99
6601 7309 6.320418 TCAAGGCAAGATGAGTCTATAACGTA 59.680 38.462 0.00 0.00 33.30 3.57
6602 7310 6.710597 AGGCAAGATGAGTCTATAACGTAA 57.289 37.500 0.00 0.00 33.30 3.18
6603 7311 7.291411 AGGCAAGATGAGTCTATAACGTAAT 57.709 36.000 0.00 0.00 33.30 1.89
6604 7312 8.405418 AGGCAAGATGAGTCTATAACGTAATA 57.595 34.615 0.00 0.00 33.30 0.98
6605 7313 8.857098 AGGCAAGATGAGTCTATAACGTAATAA 58.143 33.333 0.00 0.00 33.30 1.40
6606 7314 9.472361 GGCAAGATGAGTCTATAACGTAATAAA 57.528 33.333 0.00 0.00 33.30 1.40
6629 7337 8.915871 AAATGAAGTATTGCATGTTATCACAC 57.084 30.769 0.00 0.00 35.03 3.82
6630 7338 7.628769 ATGAAGTATTGCATGTTATCACACA 57.371 32.000 0.00 0.00 35.03 3.72
6631 7339 7.628769 TGAAGTATTGCATGTTATCACACAT 57.371 32.000 0.00 0.00 37.93 3.21
6632 7340 8.729805 TGAAGTATTGCATGTTATCACACATA 57.270 30.769 0.00 0.00 35.51 2.29
6633 7341 9.341078 TGAAGTATTGCATGTTATCACACATAT 57.659 29.630 0.00 0.00 35.51 1.78
6641 7349 9.435688 TGCATGTTATCACACATATATTACTCC 57.564 33.333 0.00 0.00 35.51 3.85
6642 7350 8.883731 GCATGTTATCACACATATATTACTCCC 58.116 37.037 0.00 0.00 35.51 4.30
6643 7351 9.383519 CATGTTATCACACATATATTACTCCCC 57.616 37.037 0.00 0.00 35.51 4.81
6644 7352 8.499288 TGTTATCACACATATATTACTCCCCA 57.501 34.615 0.00 0.00 0.00 4.96
6645 7353 8.372459 TGTTATCACACATATATTACTCCCCAC 58.628 37.037 0.00 0.00 0.00 4.61
6646 7354 8.594550 GTTATCACACATATATTACTCCCCACT 58.405 37.037 0.00 0.00 0.00 4.00
6647 7355 9.831682 TTATCACACATATATTACTCCCCACTA 57.168 33.333 0.00 0.00 0.00 2.74
6648 7356 8.917414 ATCACACATATATTACTCCCCACTAT 57.083 34.615 0.00 0.00 0.00 2.12
6650 7358 9.475620 TCACACATATATTACTCCCCACTATAG 57.524 37.037 0.00 0.00 0.00 1.31
6651 7359 9.475620 CACACATATATTACTCCCCACTATAGA 57.524 37.037 6.78 0.00 0.00 1.98
6652 7360 9.702253 ACACATATATTACTCCCCACTATAGAG 57.298 37.037 6.78 0.00 0.00 2.43
6653 7361 9.137459 CACATATATTACTCCCCACTATAGAGG 57.863 40.741 6.78 8.10 31.70 3.69
6654 7362 8.857997 ACATATATTACTCCCCACTATAGAGGT 58.142 37.037 14.29 0.00 31.70 3.85
6657 7365 6.800223 ATTACTCCCCACTATAGAGGTAGT 57.200 41.667 18.82 18.82 35.34 2.73
6658 7366 7.901804 ATTACTCCCCACTATAGAGGTAGTA 57.098 40.000 17.42 17.42 33.29 1.82
6659 7367 7.712142 TTACTCCCCACTATAGAGGTAGTAA 57.288 40.000 23.15 23.15 33.91 2.24
6660 7368 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
6661 7369 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
6662 7370 6.068616 ACTCCCCACTATAGAGGTAGTAACAA 60.069 42.308 14.29 0.00 33.29 2.83
6663 7371 6.744822 TCCCCACTATAGAGGTAGTAACAAA 58.255 40.000 14.29 0.00 33.29 2.83
6664 7372 6.837568 TCCCCACTATAGAGGTAGTAACAAAG 59.162 42.308 14.29 0.00 33.29 2.77
6665 7373 6.837568 CCCCACTATAGAGGTAGTAACAAAGA 59.162 42.308 14.29 0.00 33.29 2.52
6666 7374 7.201893 CCCCACTATAGAGGTAGTAACAAAGAC 60.202 44.444 14.29 0.00 33.29 3.01
6667 7375 7.560626 CCCACTATAGAGGTAGTAACAAAGACT 59.439 40.741 14.29 0.00 33.29 3.24
6668 7376 9.624373 CCACTATAGAGGTAGTAACAAAGACTA 57.376 37.037 6.78 0.00 33.29 2.59
6674 7382 8.930846 AGAGGTAGTAACAAAGACTAGTAACA 57.069 34.615 0.00 0.00 30.08 2.41
6675 7383 9.531158 AGAGGTAGTAACAAAGACTAGTAACAT 57.469 33.333 0.00 0.00 30.08 2.71
6678 7386 9.495754 GGTAGTAACAAAGACTAGTAACATACG 57.504 37.037 0.00 0.00 30.08 3.06
6679 7387 9.004146 GTAGTAACAAAGACTAGTAACATACGC 57.996 37.037 0.00 0.00 30.08 4.42
6680 7388 7.596494 AGTAACAAAGACTAGTAACATACGCA 58.404 34.615 0.00 0.00 0.00 5.24
6681 7389 8.248945 AGTAACAAAGACTAGTAACATACGCAT 58.751 33.333 0.00 0.00 0.00 4.73
6682 7390 6.887376 ACAAAGACTAGTAACATACGCATG 57.113 37.500 0.00 0.00 38.21 4.06
6702 7410 9.674824 ACGCATGTTACTATTCTATGTTACTAC 57.325 33.333 0.00 0.00 0.00 2.73
6703 7411 9.125906 CGCATGTTACTATTCTATGTTACTACC 57.874 37.037 0.00 0.00 0.00 3.18
6704 7412 9.420551 GCATGTTACTATTCTATGTTACTACCC 57.579 37.037 0.00 0.00 0.00 3.69
6711 7419 8.429641 ACTATTCTATGTTACTACCCATTGTGG 58.570 37.037 0.00 0.00 37.25 4.17
6712 7420 5.031066 TCTATGTTACTACCCATTGTGGC 57.969 43.478 0.00 0.00 35.79 5.01
6713 7421 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
6714 7422 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
6715 7423 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
6716 7424 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
6717 7425 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
6789 7497 6.683312 AACCCAGCCCTTATTCTATACTAC 57.317 41.667 0.00 0.00 0.00 2.73
6797 7505 6.812160 GCCCTTATTCTATACTACGGAACATG 59.188 42.308 0.00 0.00 0.00 3.21
6815 7523 9.061610 CGGAACATGTCTATTTTATTTCACAAC 57.938 33.333 0.00 0.00 0.00 3.32
6819 7527 8.522830 ACATGTCTATTTTATTTCACAACCCAG 58.477 33.333 0.00 0.00 0.00 4.45
6981 7691 1.461237 CGGCAAACACGTACGATCAAC 60.461 52.381 24.41 6.35 0.00 3.18
7032 7742 0.801251 GTCACGGTCTACTGTACGCT 59.199 55.000 0.00 0.00 33.39 5.07
7034 7744 2.030213 GTCACGGTCTACTGTACGCTAG 59.970 54.545 0.00 0.00 33.39 3.42
7048 7758 3.924918 ACGCTAGGTGCATGTCTATAG 57.075 47.619 0.00 0.00 43.06 1.31
7050 7760 2.094494 CGCTAGGTGCATGTCTATAGGG 60.094 54.545 0.00 0.00 43.06 3.53
7110 7820 0.448990 CAATCACTGCCATGTGTCCG 59.551 55.000 0.00 0.00 38.90 4.79
7117 7827 1.357690 GCCATGTGTCCGATGCATG 59.642 57.895 2.46 0.00 39.54 4.06
7142 7852 1.961277 GTGCTCACCACAACTCCCG 60.961 63.158 0.00 0.00 44.06 5.14
7143 7853 2.358737 GCTCACCACAACTCCCGG 60.359 66.667 0.00 0.00 0.00 5.73
7144 7854 2.358737 CTCACCACAACTCCCGGC 60.359 66.667 0.00 0.00 0.00 6.13
7145 7855 3.901797 CTCACCACAACTCCCGGCC 62.902 68.421 0.00 0.00 0.00 6.13
7146 7856 3.953775 CACCACAACTCCCGGCCT 61.954 66.667 0.00 0.00 0.00 5.19
7147 7857 3.953775 ACCACAACTCCCGGCCTG 61.954 66.667 0.00 0.00 0.00 4.85
7149 7859 4.641645 CACAACTCCCGGCCTGCA 62.642 66.667 0.00 0.00 0.00 4.41
7150 7860 4.643387 ACAACTCCCGGCCTGCAC 62.643 66.667 0.00 0.00 0.00 4.57
7151 7861 4.335647 CAACTCCCGGCCTGCACT 62.336 66.667 0.00 0.00 0.00 4.40
7152 7862 4.021925 AACTCCCGGCCTGCACTC 62.022 66.667 0.00 0.00 0.00 3.51
7154 7864 4.463879 CTCCCGGCCTGCACTCTG 62.464 72.222 0.00 0.00 0.00 3.35
7156 7866 4.767255 CCCGGCCTGCACTCTGTC 62.767 72.222 0.00 0.00 0.00 3.51
7157 7867 4.767255 CCGGCCTGCACTCTGTCC 62.767 72.222 0.00 0.00 0.00 4.02
7159 7869 3.695606 GGCCTGCACTCTGTCCGA 61.696 66.667 0.00 0.00 0.00 4.55
7160 7870 2.581354 GCCTGCACTCTGTCCGAT 59.419 61.111 0.00 0.00 0.00 4.18
7161 7871 1.812922 GCCTGCACTCTGTCCGATG 60.813 63.158 0.00 0.00 0.00 3.84
7162 7872 1.812922 CCTGCACTCTGTCCGATGC 60.813 63.158 0.00 0.00 38.59 3.91
7163 7873 1.079612 CTGCACTCTGTCCGATGCA 60.080 57.895 0.00 0.00 45.45 3.96
7164 7874 0.461516 CTGCACTCTGTCCGATGCAT 60.462 55.000 0.00 0.00 46.35 3.96
7165 7875 0.741927 TGCACTCTGTCCGATGCATG 60.742 55.000 2.46 0.00 42.92 4.06
7166 7876 1.434622 GCACTCTGTCCGATGCATGG 61.435 60.000 2.46 1.62 38.00 3.66
7167 7877 0.812811 CACTCTGTCCGATGCATGGG 60.813 60.000 20.95 20.95 0.00 4.00
7168 7878 1.267574 ACTCTGTCCGATGCATGGGT 61.268 55.000 25.01 3.34 0.00 4.51
7169 7879 0.107508 CTCTGTCCGATGCATGGGTT 60.108 55.000 25.01 0.00 0.00 4.11
7170 7880 0.392863 TCTGTCCGATGCATGGGTTG 60.393 55.000 25.01 16.33 0.00 3.77
7171 7881 1.378382 TGTCCGATGCATGGGTTGG 60.378 57.895 25.01 6.31 0.00 3.77
7172 7882 2.120909 GTCCGATGCATGGGTTGGG 61.121 63.158 25.01 3.25 0.00 4.12
7173 7883 2.044053 CCGATGCATGGGTTGGGT 60.044 61.111 18.96 0.00 0.00 4.51
7174 7884 2.417257 CCGATGCATGGGTTGGGTG 61.417 63.158 18.96 0.00 0.00 4.61
7175 7885 1.678635 CGATGCATGGGTTGGGTGT 60.679 57.895 2.46 0.00 0.00 4.16
7176 7886 1.656818 CGATGCATGGGTTGGGTGTC 61.657 60.000 2.46 0.00 0.00 3.67
7177 7887 0.611618 GATGCATGGGTTGGGTGTCA 60.612 55.000 2.46 0.00 0.00 3.58
7178 7888 0.899717 ATGCATGGGTTGGGTGTCAC 60.900 55.000 0.00 0.00 0.00 3.67
7179 7889 1.228552 GCATGGGTTGGGTGTCACT 60.229 57.895 2.35 0.00 0.00 3.41
7180 7890 1.244019 GCATGGGTTGGGTGTCACTC 61.244 60.000 2.35 0.00 0.00 3.51
7181 7891 0.110295 CATGGGTTGGGTGTCACTCA 59.890 55.000 0.00 0.00 0.00 3.41
7182 7892 1.075601 ATGGGTTGGGTGTCACTCAT 58.924 50.000 6.32 0.00 0.00 2.90
7183 7893 1.735926 TGGGTTGGGTGTCACTCATA 58.264 50.000 6.32 0.00 0.00 2.15
7184 7894 2.058705 TGGGTTGGGTGTCACTCATAA 58.941 47.619 6.32 0.00 0.00 1.90
7185 7895 2.647299 TGGGTTGGGTGTCACTCATAAT 59.353 45.455 6.32 0.00 0.00 1.28
7186 7896 3.016736 GGGTTGGGTGTCACTCATAATG 58.983 50.000 6.32 0.00 0.00 1.90
7187 7897 3.561313 GGGTTGGGTGTCACTCATAATGT 60.561 47.826 6.32 0.00 0.00 2.71
7188 7898 4.079253 GGTTGGGTGTCACTCATAATGTT 58.921 43.478 6.32 0.00 0.00 2.71
7189 7899 4.522789 GGTTGGGTGTCACTCATAATGTTT 59.477 41.667 6.32 0.00 0.00 2.83
7190 7900 5.010617 GGTTGGGTGTCACTCATAATGTTTT 59.989 40.000 6.32 0.00 0.00 2.43
7191 7901 5.703978 TGGGTGTCACTCATAATGTTTTG 57.296 39.130 0.00 0.00 0.00 2.44
7192 7902 5.136828 TGGGTGTCACTCATAATGTTTTGT 58.863 37.500 0.00 0.00 0.00 2.83
7193 7903 6.299922 TGGGTGTCACTCATAATGTTTTGTA 58.700 36.000 0.00 0.00 0.00 2.41
7194 7904 6.945435 TGGGTGTCACTCATAATGTTTTGTAT 59.055 34.615 0.00 0.00 0.00 2.29
7195 7905 7.120579 TGGGTGTCACTCATAATGTTTTGTATC 59.879 37.037 0.00 0.00 0.00 2.24
7196 7906 7.415206 GGGTGTCACTCATAATGTTTTGTATCC 60.415 40.741 2.35 0.00 0.00 2.59
7197 7907 7.180079 GTGTCACTCATAATGTTTTGTATCCG 58.820 38.462 0.00 0.00 0.00 4.18
7198 7908 6.183360 TGTCACTCATAATGTTTTGTATCCGC 60.183 38.462 0.00 0.00 0.00 5.54
7199 7909 6.037172 GTCACTCATAATGTTTTGTATCCGCT 59.963 38.462 0.00 0.00 0.00 5.52
7200 7910 6.597672 TCACTCATAATGTTTTGTATCCGCTT 59.402 34.615 0.00 0.00 0.00 4.68
7201 7911 6.688385 CACTCATAATGTTTTGTATCCGCTTG 59.312 38.462 0.00 0.00 0.00 4.01
7202 7912 6.597672 ACTCATAATGTTTTGTATCCGCTTGA 59.402 34.615 0.00 0.00 0.00 3.02
7203 7913 7.283127 ACTCATAATGTTTTGTATCCGCTTGAT 59.717 33.333 0.00 0.00 37.49 2.57
7204 7914 7.416817 TCATAATGTTTTGTATCCGCTTGATG 58.583 34.615 0.00 0.00 34.76 3.07
7205 7915 3.485947 TGTTTTGTATCCGCTTGATGC 57.514 42.857 0.00 0.00 36.68 3.91
7206 7916 3.081061 TGTTTTGTATCCGCTTGATGCT 58.919 40.909 3.59 0.00 37.04 3.79
7207 7917 4.257731 TGTTTTGTATCCGCTTGATGCTA 58.742 39.130 3.59 0.00 37.04 3.49
7208 7918 4.881273 TGTTTTGTATCCGCTTGATGCTAT 59.119 37.500 3.59 0.00 37.04 2.97
7209 7919 6.052360 TGTTTTGTATCCGCTTGATGCTATA 58.948 36.000 3.59 0.00 37.04 1.31
7210 7920 6.710295 TGTTTTGTATCCGCTTGATGCTATAT 59.290 34.615 3.59 0.00 37.04 0.86
7211 7921 7.228507 TGTTTTGTATCCGCTTGATGCTATATT 59.771 33.333 3.59 0.00 37.04 1.28
7212 7922 7.744087 TTTGTATCCGCTTGATGCTATATTT 57.256 32.000 3.59 0.00 37.04 1.40
7213 7923 7.744087 TTGTATCCGCTTGATGCTATATTTT 57.256 32.000 3.59 0.00 37.04 1.82
7214 7924 7.744087 TGTATCCGCTTGATGCTATATTTTT 57.256 32.000 3.59 0.00 37.04 1.94
7215 7925 7.584108 TGTATCCGCTTGATGCTATATTTTTG 58.416 34.615 3.59 0.00 37.04 2.44
7216 7926 6.882610 ATCCGCTTGATGCTATATTTTTGA 57.117 33.333 0.00 0.00 40.11 2.69
7217 7927 6.304356 TCCGCTTGATGCTATATTTTTGAG 57.696 37.500 0.00 0.00 40.11 3.02
7218 7928 5.822519 TCCGCTTGATGCTATATTTTTGAGT 59.177 36.000 0.00 0.00 40.11 3.41
7219 7929 6.318648 TCCGCTTGATGCTATATTTTTGAGTT 59.681 34.615 0.00 0.00 40.11 3.01
7220 7930 7.497579 TCCGCTTGATGCTATATTTTTGAGTTA 59.502 33.333 0.00 0.00 40.11 2.24
7221 7931 8.128582 CCGCTTGATGCTATATTTTTGAGTTAA 58.871 33.333 0.00 0.00 40.11 2.01
7222 7932 9.669353 CGCTTGATGCTATATTTTTGAGTTAAT 57.331 29.630 0.00 0.00 40.11 1.40
7291 8001 0.034337 TCCTGCCGTTTGGTACTGAC 59.966 55.000 0.00 0.00 37.67 3.51
7342 8055 0.529992 GGTGGCACTCTGCGTATACC 60.530 60.000 18.45 0.00 46.21 2.73
7363 8076 2.365617 CCATAGGCCGAGTGTATGACTT 59.634 50.000 9.87 0.00 33.83 3.01
7376 8089 3.689161 TGTATGACTTGGCTTATGTGTGC 59.311 43.478 0.00 0.00 0.00 4.57
7418 8131 3.492102 TGCTAATTGGACTATCCCTGC 57.508 47.619 0.00 0.00 35.03 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.400568 TGTTAAATACTCCCTCCGTAAACTG 58.599 40.000 0.00 0.00 0.00 3.16
39 40 6.909550 TTTACATGAAGGCAACCTTACATT 57.090 33.333 0.00 0.98 44.82 2.71
308 309 5.321959 TGATCTGCAATTATCCGCAAAAA 57.678 34.783 0.00 0.00 37.76 1.94
309 310 4.979943 TGATCTGCAATTATCCGCAAAA 57.020 36.364 0.00 0.00 37.76 2.44
310 311 5.283294 CAATGATCTGCAATTATCCGCAAA 58.717 37.500 0.00 0.00 37.76 3.68
311 312 4.793678 GCAATGATCTGCAATTATCCGCAA 60.794 41.667 2.23 0.00 42.17 4.85
312 313 3.304861 GCAATGATCTGCAATTATCCGCA 60.305 43.478 2.23 0.00 42.17 5.69
313 314 3.057736 AGCAATGATCTGCAATTATCCGC 60.058 43.478 9.38 0.00 45.18 5.54
314 315 4.761235 AGCAATGATCTGCAATTATCCG 57.239 40.909 9.38 0.00 45.18 4.18
315 316 5.227908 CCAAGCAATGATCTGCAATTATCC 58.772 41.667 9.38 0.00 45.18 2.59
316 317 4.684703 GCCAAGCAATGATCTGCAATTATC 59.315 41.667 9.38 0.00 45.18 1.75
317 318 4.100344 TGCCAAGCAATGATCTGCAATTAT 59.900 37.500 9.38 0.00 45.18 1.28
318 319 3.447944 TGCCAAGCAATGATCTGCAATTA 59.552 39.130 9.38 0.00 45.18 1.40
319 320 2.235155 TGCCAAGCAATGATCTGCAATT 59.765 40.909 9.38 0.00 45.18 2.32
320 321 1.828595 TGCCAAGCAATGATCTGCAAT 59.171 42.857 9.38 0.00 45.18 3.56
321 322 1.203758 CTGCCAAGCAATGATCTGCAA 59.796 47.619 9.38 0.00 45.18 4.08
322 323 0.815095 CTGCCAAGCAATGATCTGCA 59.185 50.000 9.38 0.00 45.18 4.41
323 324 0.102481 CCTGCCAAGCAATGATCTGC 59.898 55.000 0.00 0.00 38.41 4.26
428 429 4.695606 TGGTCCCATCTTACTTACCTCTT 58.304 43.478 0.00 0.00 0.00 2.85
613 614 2.758327 CAGTCGACCCCCGGATCA 60.758 66.667 13.01 0.00 39.14 2.92
719 720 1.194781 AGGTGGAGTTGTGCCTCGAT 61.195 55.000 0.00 0.00 31.98 3.59
940 971 0.721718 GACCTTGCGATTTGAGACCG 59.278 55.000 0.00 0.00 0.00 4.79
1120 1151 0.195096 ACTTACCTGGGGGTTGGAGA 59.805 55.000 0.00 0.00 44.73 3.71
1355 1386 0.900647 CAGACTCAGACTCCCGGGTT 60.901 60.000 22.86 9.04 0.00 4.11
1449 1480 2.096248 ACCAAAATTGTGTGTGTCGGT 58.904 42.857 0.00 0.00 0.00 4.69
1504 1543 9.624697 TTAATCAGTTCATGAATAGCACAAAAC 57.375 29.630 12.12 0.00 42.53 2.43
1544 1583 3.133542 CCTGCCTCACATAGATTGACAGA 59.866 47.826 0.00 0.00 0.00 3.41
1661 1700 4.378046 GGCCGTGTAACACTTTGAGTAATG 60.378 45.833 0.00 0.00 35.74 1.90
1702 1741 6.953101 TGCATTCCTATGTAACTTCTGGTAA 58.047 36.000 0.00 0.00 34.12 2.85
1730 1769 0.980423 GTGCCTTCCTCTCCTCTTGT 59.020 55.000 0.00 0.00 0.00 3.16
1732 1771 1.893919 GCGTGCCTTCCTCTCCTCTT 61.894 60.000 0.00 0.00 0.00 2.85
1765 1804 9.410556 GACTTTGTAAACATGCTGATAACAAAT 57.589 29.630 0.00 0.00 0.00 2.32
1871 1910 1.651737 TTTGGGACTCGAGGAATGGA 58.348 50.000 18.41 0.00 0.00 3.41
1872 1911 2.171448 AGATTTGGGACTCGAGGAATGG 59.829 50.000 18.41 0.00 0.00 3.16
1880 1919 3.388024 TCCTATGGAAGATTTGGGACTCG 59.612 47.826 0.00 0.00 0.00 4.18
1882 1921 4.977739 TCATCCTATGGAAGATTTGGGACT 59.022 41.667 0.00 0.00 34.34 3.85
1921 1960 1.168714 GTTGGAAAGCCAGCCTAGTG 58.831 55.000 0.00 0.00 46.91 2.74
2200 2239 4.211374 GCAATACGTTGATGATACCCTCAC 59.789 45.833 0.00 0.00 37.53 3.51
2281 2320 6.127703 GCAGACTTACTACAGTAACTCATCCA 60.128 42.308 9.83 0.00 35.75 3.41
2366 2415 1.303317 GCTCAATGGTGTTCCGGGT 60.303 57.895 0.00 0.00 36.30 5.28
2511 2560 5.626116 CGGCCACTAAGGTTCTAACAACTAT 60.626 44.000 2.24 0.00 40.61 2.12
2554 2603 6.521527 ACTCATATAGGCCCATTTCTCTTT 57.478 37.500 0.00 0.00 0.00 2.52
2606 2655 3.181488 TGAACCAAGCACATGTTGTTCTG 60.181 43.478 16.42 4.35 0.00 3.02
2662 2711 3.969976 CAATCATCCTACCCTTCCTCTCA 59.030 47.826 0.00 0.00 0.00 3.27
2703 2752 3.132289 CGGACCAGCCTACTATCAGAAAA 59.868 47.826 0.00 0.00 0.00 2.29
2747 2796 5.278957 CCTTTCTCCAATTGAACCGTCAAAT 60.279 40.000 7.12 0.00 46.66 2.32
2813 2862 9.729023 CTCAAAATACAATGTCACACAACTTTA 57.271 29.630 0.00 0.00 0.00 1.85
2873 2922 1.039233 CCCAAATCATCGGGCTTGCT 61.039 55.000 0.00 0.00 35.09 3.91
2888 2937 3.806949 AGCAACTCCTATTTCACCCAA 57.193 42.857 0.00 0.00 0.00 4.12
2977 3026 5.566826 GCACTATAGATGCCGGTGAGAATAA 60.567 44.000 6.78 0.00 37.08 1.40
3190 3241 3.942115 GCTCAGGTCTCAAAATTAGGACC 59.058 47.826 0.00 0.00 45.98 4.46
3197 3248 3.080319 GCTCTTGCTCAGGTCTCAAAAT 58.920 45.455 0.00 0.00 36.03 1.82
3265 3316 1.063341 TGAGCCTCTCCTGCATAGAGT 60.063 52.381 19.46 7.09 39.09 3.24
3271 3322 0.694771 AATGTTGAGCCTCTCCTGCA 59.305 50.000 0.00 0.00 0.00 4.41
3359 3410 4.443621 TCTCGTCCACATTAACACAAACA 58.556 39.130 0.00 0.00 0.00 2.83
3584 3635 4.112634 CAAGCAATCATTCCAGCAATCAG 58.887 43.478 0.00 0.00 0.00 2.90
3753 3804 2.359169 CGGCTCACCCTGCTCCTAA 61.359 63.158 0.00 0.00 0.00 2.69
4027 4079 2.803155 GAATGTCAGACGGCTGGGCA 62.803 60.000 20.50 18.14 42.53 5.36
4049 4101 0.393537 CCACCCTGTCAATCTGCTCC 60.394 60.000 0.00 0.00 0.00 4.70
4254 4306 9.884636 TGCTTAGCTATGTTTTAGTTTATCTCA 57.115 29.630 5.60 0.00 0.00 3.27
4295 4347 1.442769 CTGCCACACGCTTAAGTGAT 58.557 50.000 22.48 7.33 44.43 3.06
4333 4385 5.914033 ACATTACTGTGCATATAGTTCGGT 58.086 37.500 6.55 0.00 33.22 4.69
4419 4471 9.626045 CAATATAAACACAAGAACCTTTCCTTC 57.374 33.333 0.00 0.00 0.00 3.46
4875 5541 8.736244 GGTTCCTAGCATTTCAAACTAACAATA 58.264 33.333 0.00 0.00 0.00 1.90
4987 5653 7.308435 GTTTGTCTGGAATGAGATAAAACAGG 58.692 38.462 0.00 0.00 35.57 4.00
5000 5666 3.434309 CAAGATGGGGTTTGTCTGGAAT 58.566 45.455 0.00 0.00 0.00 3.01
5035 5701 2.225491 GCTAATCCAAGCGAAACACACA 59.775 45.455 0.00 0.00 31.76 3.72
5197 5863 6.972977 GCTAAAGGCATGCATTTTCTGATGC 61.973 44.000 32.26 21.47 45.12 3.91
5275 5941 7.672983 TGTTGCCTTATTGAGAACTCTTTAG 57.327 36.000 3.51 0.00 0.00 1.85
5291 5957 2.039084 CACCCTAGAGTCTTGTTGCCTT 59.961 50.000 0.00 0.00 0.00 4.35
5329 5995 5.467399 CAGTTACCGAGAACACACCAAATAA 59.533 40.000 2.82 0.00 0.00 1.40
5372 6040 5.008613 TCAGTCACTGGAAGCAAATACAAAC 59.991 40.000 4.57 0.00 37.60 2.93
5466 6134 8.798859 TTCTCAAGCAATAAAAGATAGAGCTT 57.201 30.769 0.00 0.00 41.05 3.74
5587 6255 8.915057 ATAATGATGTCCTACTCAATTGAAGG 57.085 34.615 17.03 17.03 0.00 3.46
5728 6396 6.257994 ACATCATTGAGATACAAGTGGGAT 57.742 37.500 0.00 0.00 42.02 3.85
5889 6558 9.796120 GATGTGGAAATACCGAATTCATTTTAA 57.204 29.630 6.22 0.00 42.61 1.52
6085 6766 3.175929 CCACAACCAAAACACGAAAGAC 58.824 45.455 0.00 0.00 0.00 3.01
6091 6772 0.804156 GGTGCCACAACCAAAACACG 60.804 55.000 0.00 0.00 40.22 4.49
6167 6855 2.877168 CAAGGCAGCAGGAAGATCATAC 59.123 50.000 0.00 0.00 0.00 2.39
6444 7152 4.503714 ACCTATGTTACTCCCATTGTGG 57.496 45.455 0.00 0.00 37.25 4.17
6445 7153 6.235231 ACTACCTATGTTACTCCCATTGTG 57.765 41.667 0.00 0.00 0.00 3.33
6446 7154 7.400915 TGTTACTACCTATGTTACTCCCATTGT 59.599 37.037 0.00 0.00 0.00 2.71
6447 7155 7.788026 TGTTACTACCTATGTTACTCCCATTG 58.212 38.462 0.00 0.00 0.00 2.82
6448 7156 7.983166 TGTTACTACCTATGTTACTCCCATT 57.017 36.000 0.00 0.00 0.00 3.16
6449 7157 7.787904 TGATGTTACTACCTATGTTACTCCCAT 59.212 37.037 0.00 0.00 0.00 4.00
6450 7158 7.069085 GTGATGTTACTACCTATGTTACTCCCA 59.931 40.741 0.00 0.00 0.00 4.37
6451 7159 7.069085 TGTGATGTTACTACCTATGTTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
6452 7160 8.004087 TGTGATGTTACTACCTATGTTACTCC 57.996 38.462 0.00 0.00 0.00 3.85
6489 7197 9.941325 TCATTTATTGTTTGCCACATCTATTTT 57.059 25.926 0.00 0.00 34.43 1.82
6490 7198 9.941325 TTCATTTATTGTTTGCCACATCTATTT 57.059 25.926 0.00 0.00 34.43 1.40
6491 7199 9.590451 CTTCATTTATTGTTTGCCACATCTATT 57.410 29.630 0.00 0.00 34.43 1.73
6492 7200 8.970020 TCTTCATTTATTGTTTGCCACATCTAT 58.030 29.630 0.00 0.00 34.43 1.98
6493 7201 8.347004 TCTTCATTTATTGTTTGCCACATCTA 57.653 30.769 0.00 0.00 34.43 1.98
6494 7202 7.230849 TCTTCATTTATTGTTTGCCACATCT 57.769 32.000 0.00 0.00 34.43 2.90
6495 7203 7.887996 TTCTTCATTTATTGTTTGCCACATC 57.112 32.000 0.00 0.00 34.43 3.06
6496 7204 8.149647 TCTTTCTTCATTTATTGTTTGCCACAT 58.850 29.630 0.00 0.00 34.43 3.21
6497 7205 7.495901 TCTTTCTTCATTTATTGTTTGCCACA 58.504 30.769 0.00 0.00 0.00 4.17
6498 7206 7.945033 TCTTTCTTCATTTATTGTTTGCCAC 57.055 32.000 0.00 0.00 0.00 5.01
6499 7207 8.954950 TTTCTTTCTTCATTTATTGTTTGCCA 57.045 26.923 0.00 0.00 0.00 4.92
6500 7208 8.498358 CCTTTCTTTCTTCATTTATTGTTTGCC 58.502 33.333 0.00 0.00 0.00 4.52
6501 7209 9.260002 TCCTTTCTTTCTTCATTTATTGTTTGC 57.740 29.630 0.00 0.00 0.00 3.68
6512 7220 9.847224 TGTTACTACTTTCCTTTCTTTCTTCAT 57.153 29.630 0.00 0.00 0.00 2.57
6513 7221 9.847224 ATGTTACTACTTTCCTTTCTTTCTTCA 57.153 29.630 0.00 0.00 0.00 3.02
6564 7272 9.833917 CTCATCTTGCCTTGATATATATGATGT 57.166 33.333 0.00 0.00 32.21 3.06
6565 7273 9.833917 ACTCATCTTGCCTTGATATATATGATG 57.166 33.333 0.00 4.82 0.00 3.07
6567 7275 9.264653 AGACTCATCTTGCCTTGATATATATGA 57.735 33.333 0.00 0.00 0.00 2.15
6573 7281 8.031864 CGTTATAGACTCATCTTGCCTTGATAT 58.968 37.037 0.00 0.00 36.29 1.63
6574 7282 7.014326 ACGTTATAGACTCATCTTGCCTTGATA 59.986 37.037 0.00 0.00 36.29 2.15
6575 7283 6.183360 ACGTTATAGACTCATCTTGCCTTGAT 60.183 38.462 0.00 0.00 36.29 2.57
6576 7284 5.127194 ACGTTATAGACTCATCTTGCCTTGA 59.873 40.000 0.00 0.00 36.29 3.02
6577 7285 5.352284 ACGTTATAGACTCATCTTGCCTTG 58.648 41.667 0.00 0.00 36.29 3.61
6578 7286 5.599999 ACGTTATAGACTCATCTTGCCTT 57.400 39.130 0.00 0.00 36.29 4.35
6579 7287 6.710597 TTACGTTATAGACTCATCTTGCCT 57.289 37.500 0.00 0.00 36.29 4.75
6580 7288 9.472361 TTTATTACGTTATAGACTCATCTTGCC 57.528 33.333 0.00 0.00 36.29 4.52
6604 7312 8.522003 TGTGTGATAACATGCAATACTTCATTT 58.478 29.630 0.00 0.00 0.00 2.32
6605 7313 8.054152 TGTGTGATAACATGCAATACTTCATT 57.946 30.769 0.00 0.00 0.00 2.57
6606 7314 7.628769 TGTGTGATAACATGCAATACTTCAT 57.371 32.000 0.00 0.00 0.00 2.57
6607 7315 7.628769 ATGTGTGATAACATGCAATACTTCA 57.371 32.000 0.00 0.00 39.32 3.02
6615 7323 9.435688 GGAGTAATATATGTGTGATAACATGCA 57.564 33.333 0.00 0.00 40.93 3.96
6616 7324 8.883731 GGGAGTAATATATGTGTGATAACATGC 58.116 37.037 0.00 0.00 40.93 4.06
6617 7325 9.383519 GGGGAGTAATATATGTGTGATAACATG 57.616 37.037 0.17 0.00 40.93 3.21
6618 7326 9.111519 TGGGGAGTAATATATGTGTGATAACAT 57.888 33.333 0.00 0.00 43.21 2.71
6619 7327 8.372459 GTGGGGAGTAATATATGTGTGATAACA 58.628 37.037 0.00 0.00 0.00 2.41
6620 7328 8.594550 AGTGGGGAGTAATATATGTGTGATAAC 58.405 37.037 0.00 0.00 0.00 1.89
6621 7329 8.736097 AGTGGGGAGTAATATATGTGTGATAA 57.264 34.615 0.00 0.00 0.00 1.75
6623 7331 8.917414 ATAGTGGGGAGTAATATATGTGTGAT 57.083 34.615 0.00 0.00 0.00 3.06
6624 7332 9.475620 CTATAGTGGGGAGTAATATATGTGTGA 57.524 37.037 0.00 0.00 0.00 3.58
6625 7333 9.475620 TCTATAGTGGGGAGTAATATATGTGTG 57.524 37.037 0.00 0.00 0.00 3.82
6626 7334 9.702253 CTCTATAGTGGGGAGTAATATATGTGT 57.298 37.037 0.00 0.00 0.00 3.72
6627 7335 9.137459 CCTCTATAGTGGGGAGTAATATATGTG 57.863 40.741 12.29 0.00 0.00 3.21
6628 7336 8.857997 ACCTCTATAGTGGGGAGTAATATATGT 58.142 37.037 21.82 0.00 33.22 2.29
6631 7339 9.585650 ACTACCTCTATAGTGGGGAGTAATATA 57.414 37.037 22.09 6.34 34.02 0.86
6632 7340 8.479601 ACTACCTCTATAGTGGGGAGTAATAT 57.520 38.462 22.09 5.67 34.02 1.28
6633 7341 7.901804 ACTACCTCTATAGTGGGGAGTAATA 57.098 40.000 22.09 7.41 34.02 0.98
6634 7342 6.800223 ACTACCTCTATAGTGGGGAGTAAT 57.200 41.667 22.09 6.79 34.02 1.89
6635 7343 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
6636 7344 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
6637 7345 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
6638 7346 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
6639 7347 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
6640 7348 6.837568 TCTTTGTTACTACCTCTATAGTGGGG 59.162 42.308 21.82 16.35 36.09 4.96
6641 7349 7.560626 AGTCTTTGTTACTACCTCTATAGTGGG 59.439 40.741 21.82 16.23 36.09 4.61
6642 7350 8.522542 AGTCTTTGTTACTACCTCTATAGTGG 57.477 38.462 17.49 17.49 36.09 4.00
6649 7357 8.930846 TGTTACTAGTCTTTGTTACTACCTCT 57.069 34.615 0.00 0.00 0.00 3.69
6652 7360 9.495754 CGTATGTTACTAGTCTTTGTTACTACC 57.504 37.037 0.00 0.00 0.00 3.18
6653 7361 9.004146 GCGTATGTTACTAGTCTTTGTTACTAC 57.996 37.037 0.00 0.00 0.00 2.73
6654 7362 8.729756 TGCGTATGTTACTAGTCTTTGTTACTA 58.270 33.333 0.00 0.00 0.00 1.82
6655 7363 7.596494 TGCGTATGTTACTAGTCTTTGTTACT 58.404 34.615 0.00 0.00 0.00 2.24
6656 7364 7.801547 TGCGTATGTTACTAGTCTTTGTTAC 57.198 36.000 0.00 0.00 0.00 2.50
6657 7365 8.030692 ACATGCGTATGTTACTAGTCTTTGTTA 58.969 33.333 13.79 0.00 45.01 2.41
6658 7366 6.872020 ACATGCGTATGTTACTAGTCTTTGTT 59.128 34.615 13.79 0.00 45.01 2.83
6659 7367 6.395629 ACATGCGTATGTTACTAGTCTTTGT 58.604 36.000 13.79 0.00 45.01 2.83
6660 7368 6.887376 ACATGCGTATGTTACTAGTCTTTG 57.113 37.500 13.79 0.00 45.01 2.77
6676 7384 9.674824 GTAGTAACATAGAATAGTAACATGCGT 57.325 33.333 0.00 0.00 0.00 5.24
6677 7385 9.125906 GGTAGTAACATAGAATAGTAACATGCG 57.874 37.037 0.00 0.00 0.00 4.73
6678 7386 9.420551 GGGTAGTAACATAGAATAGTAACATGC 57.579 37.037 0.00 0.00 0.00 4.06
6685 7393 8.429641 CCACAATGGGTAGTAACATAGAATAGT 58.570 37.037 0.00 0.00 32.67 2.12
6686 7394 7.387948 GCCACAATGGGTAGTAACATAGAATAG 59.612 40.741 0.00 0.00 38.19 1.73
6687 7395 7.221450 GCCACAATGGGTAGTAACATAGAATA 58.779 38.462 0.00 0.00 38.19 1.75
6688 7396 6.062095 GCCACAATGGGTAGTAACATAGAAT 58.938 40.000 0.00 0.00 38.19 2.40
6689 7397 5.433526 GCCACAATGGGTAGTAACATAGAA 58.566 41.667 0.00 0.00 38.19 2.10
6690 7398 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
6702 7410 4.780815 TCAATTAGACTAGCCACAATGGG 58.219 43.478 0.00 0.00 38.19 4.00
6703 7411 4.818546 CCTCAATTAGACTAGCCACAATGG 59.181 45.833 0.00 0.00 41.55 3.16
6704 7412 5.674525 TCCTCAATTAGACTAGCCACAATG 58.325 41.667 0.00 0.00 0.00 2.82
6705 7413 5.957771 TCCTCAATTAGACTAGCCACAAT 57.042 39.130 0.00 0.00 0.00 2.71
6706 7414 5.425217 TGATCCTCAATTAGACTAGCCACAA 59.575 40.000 0.00 0.00 0.00 3.33
6707 7415 4.962362 TGATCCTCAATTAGACTAGCCACA 59.038 41.667 0.00 0.00 0.00 4.17
6708 7416 5.293560 GTGATCCTCAATTAGACTAGCCAC 58.706 45.833 0.00 0.00 0.00 5.01
6709 7417 4.345257 GGTGATCCTCAATTAGACTAGCCA 59.655 45.833 0.00 0.00 0.00 4.75
6710 7418 4.591072 AGGTGATCCTCAATTAGACTAGCC 59.409 45.833 0.00 0.00 40.58 3.93
6711 7419 5.799827 AGGTGATCCTCAATTAGACTAGC 57.200 43.478 0.00 0.00 40.58 3.42
6712 7420 9.308000 AGATTAGGTGATCCTCAATTAGACTAG 57.692 37.037 0.00 0.00 43.94 2.57
6713 7421 9.661954 AAGATTAGGTGATCCTCAATTAGACTA 57.338 33.333 0.00 0.00 43.94 2.59
6714 7422 8.560124 AAGATTAGGTGATCCTCAATTAGACT 57.440 34.615 0.00 0.00 43.94 3.24
6715 7423 9.620259 AAAAGATTAGGTGATCCTCAATTAGAC 57.380 33.333 0.00 0.00 43.94 2.59
6789 7497 9.061610 GTTGTGAAATAAAATAGACATGTTCCG 57.938 33.333 0.00 0.00 0.00 4.30
6815 7523 2.695585 ACCCTAGCTCCTTTATCTGGG 58.304 52.381 0.00 0.00 39.26 4.45
6819 7527 6.602278 ACCATTTAACCCTAGCTCCTTTATC 58.398 40.000 0.00 0.00 0.00 1.75
6981 7691 1.514014 GCACGGCTTACAATTGCGG 60.514 57.895 5.05 0.00 35.95 5.69
7032 7742 1.893137 CGCCCTATAGACATGCACCTA 59.107 52.381 0.00 0.00 0.00 3.08
7034 7744 0.679505 TCGCCCTATAGACATGCACC 59.320 55.000 0.00 0.00 0.00 5.01
7110 7820 0.737219 GAGCACTCAACCCATGCATC 59.263 55.000 0.00 0.00 41.97 3.91
7117 7827 0.465460 TTGTGGTGAGCACTCAACCC 60.465 55.000 16.26 6.78 46.35 4.11
7140 7850 4.767255 GGACAGAGTGCAGGCCGG 62.767 72.222 0.00 0.00 0.00 6.13
7142 7852 3.023949 ATCGGACAGAGTGCAGGCC 62.024 63.158 0.00 0.00 0.00 5.19
7143 7853 1.812922 CATCGGACAGAGTGCAGGC 60.813 63.158 0.00 0.00 0.00 4.85
7144 7854 1.812922 GCATCGGACAGAGTGCAGG 60.813 63.158 0.00 0.00 35.18 4.85
7145 7855 0.461516 ATGCATCGGACAGAGTGCAG 60.462 55.000 8.89 0.00 42.28 4.41
7146 7856 0.741927 CATGCATCGGACAGAGTGCA 60.742 55.000 0.00 5.76 42.76 4.57
7147 7857 1.434622 CCATGCATCGGACAGAGTGC 61.435 60.000 0.00 0.00 35.44 4.40
7148 7858 0.812811 CCCATGCATCGGACAGAGTG 60.813 60.000 3.96 0.00 0.00 3.51
7149 7859 1.267574 ACCCATGCATCGGACAGAGT 61.268 55.000 18.03 3.29 0.00 3.24
7150 7860 0.107508 AACCCATGCATCGGACAGAG 60.108 55.000 18.03 2.71 0.00 3.35
7151 7861 0.392863 CAACCCATGCATCGGACAGA 60.393 55.000 18.03 0.00 0.00 3.41
7152 7862 1.378882 CCAACCCATGCATCGGACAG 61.379 60.000 18.03 5.97 0.00 3.51
7153 7863 1.378382 CCAACCCATGCATCGGACA 60.378 57.895 18.03 0.00 0.00 4.02
7154 7864 2.120909 CCCAACCCATGCATCGGAC 61.121 63.158 18.03 0.00 0.00 4.79
7155 7865 2.275089 CCCAACCCATGCATCGGA 59.725 61.111 18.03 0.00 0.00 4.55
7156 7866 2.044053 ACCCAACCCATGCATCGG 60.044 61.111 9.02 9.02 0.00 4.18
7157 7867 1.656818 GACACCCAACCCATGCATCG 61.657 60.000 0.00 0.00 0.00 3.84
7158 7868 0.611618 TGACACCCAACCCATGCATC 60.612 55.000 0.00 0.00 0.00 3.91
7159 7869 0.899717 GTGACACCCAACCCATGCAT 60.900 55.000 0.00 0.00 0.00 3.96
7160 7870 1.530419 GTGACACCCAACCCATGCA 60.530 57.895 0.00 0.00 0.00 3.96
7161 7871 1.228552 AGTGACACCCAACCCATGC 60.229 57.895 0.84 0.00 0.00 4.06
7162 7872 0.110295 TGAGTGACACCCAACCCATG 59.890 55.000 0.84 0.00 0.00 3.66
7163 7873 1.075601 ATGAGTGACACCCAACCCAT 58.924 50.000 0.84 0.00 0.00 4.00
7164 7874 1.735926 TATGAGTGACACCCAACCCA 58.264 50.000 0.84 0.00 0.00 4.51
7165 7875 2.871096 TTATGAGTGACACCCAACCC 57.129 50.000 0.84 0.00 0.00 4.11
7166 7876 3.686016 ACATTATGAGTGACACCCAACC 58.314 45.455 0.84 0.00 0.00 3.77
7167 7877 5.705609 AAACATTATGAGTGACACCCAAC 57.294 39.130 0.84 0.00 0.00 3.77
7168 7878 5.596361 ACAAAACATTATGAGTGACACCCAA 59.404 36.000 0.84 0.00 0.00 4.12
7169 7879 5.136828 ACAAAACATTATGAGTGACACCCA 58.863 37.500 0.84 0.00 0.00 4.51
7170 7880 5.705609 ACAAAACATTATGAGTGACACCC 57.294 39.130 0.84 0.00 0.00 4.61
7171 7881 7.472543 GGATACAAAACATTATGAGTGACACC 58.527 38.462 0.84 0.00 0.00 4.16
7172 7882 7.180079 CGGATACAAAACATTATGAGTGACAC 58.820 38.462 0.00 0.00 0.00 3.67
7173 7883 6.183360 GCGGATACAAAACATTATGAGTGACA 60.183 38.462 0.00 0.00 0.00 3.58
7174 7884 6.037172 AGCGGATACAAAACATTATGAGTGAC 59.963 38.462 0.00 0.00 0.00 3.67
7175 7885 6.112734 AGCGGATACAAAACATTATGAGTGA 58.887 36.000 0.00 0.00 0.00 3.41
7176 7886 6.363577 AGCGGATACAAAACATTATGAGTG 57.636 37.500 0.00 0.00 0.00 3.51
7177 7887 6.597672 TCAAGCGGATACAAAACATTATGAGT 59.402 34.615 0.00 0.00 0.00 3.41
7178 7888 7.015226 TCAAGCGGATACAAAACATTATGAG 57.985 36.000 0.00 0.00 0.00 2.90
7179 7889 6.993786 TCAAGCGGATACAAAACATTATGA 57.006 33.333 0.00 0.00 0.00 2.15
7180 7890 6.142798 GCATCAAGCGGATACAAAACATTATG 59.857 38.462 0.00 0.00 33.95 1.90
7181 7891 6.208644 GCATCAAGCGGATACAAAACATTAT 58.791 36.000 0.00 0.00 33.95 1.28
7182 7892 5.577835 GCATCAAGCGGATACAAAACATTA 58.422 37.500 0.00 0.00 33.95 1.90
7183 7893 4.423732 GCATCAAGCGGATACAAAACATT 58.576 39.130 0.00 0.00 33.95 2.71
7184 7894 4.032703 GCATCAAGCGGATACAAAACAT 57.967 40.909 0.00 0.00 33.95 2.71
7185 7895 3.485947 GCATCAAGCGGATACAAAACA 57.514 42.857 0.00 0.00 33.95 2.83
7243 7953 2.197324 TGCAGGCCGGGAGTTTTT 59.803 55.556 2.18 0.00 0.00 1.94
7244 7954 2.597510 GTGCAGGCCGGGAGTTTT 60.598 61.111 2.18 0.00 0.00 2.43
7245 7955 1.774894 TAAGTGCAGGCCGGGAGTTT 61.775 55.000 21.49 10.49 0.00 2.66
7246 7956 2.221299 TAAGTGCAGGCCGGGAGTT 61.221 57.895 20.31 20.31 0.00 3.01
7247 7957 2.606519 TAAGTGCAGGCCGGGAGT 60.607 61.111 2.18 0.88 0.00 3.85
7248 7958 2.125106 GTAAGTGCAGGCCGGGAG 60.125 66.667 2.18 0.00 0.00 4.30
7249 7959 4.077184 CGTAAGTGCAGGCCGGGA 62.077 66.667 2.18 0.00 0.00 5.14
7333 8046 0.540133 TCGGCCTATGGGTATACGCA 60.540 55.000 23.09 23.09 43.04 5.24
7342 8055 1.964223 AGTCATACACTCGGCCTATGG 59.036 52.381 0.00 0.00 0.00 2.74
7363 8076 5.657826 AAAACATATGCACACATAAGCCA 57.342 34.783 1.58 0.00 41.99 4.75
7394 8107 5.127031 GCAGGGATAGTCCAATTAGCAAAAA 59.873 40.000 0.00 0.00 38.64 1.94
7395 8108 4.644685 GCAGGGATAGTCCAATTAGCAAAA 59.355 41.667 0.00 0.00 38.64 2.44
7396 8109 4.207165 GCAGGGATAGTCCAATTAGCAAA 58.793 43.478 0.00 0.00 38.64 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.