Multiple sequence alignment - TraesCS6A01G188700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G188700 chr6A 100.000 5459 0 0 1 5459 230710707 230705249 0.000000e+00 10081.0
1 TraesCS6A01G188700 chr6A 91.964 112 8 1 1 112 193192282 193192172 7.320000e-34 156.0
2 TraesCS6A01G188700 chr6A 91.228 114 9 1 1 113 96171041 96171154 2.630000e-33 154.0
3 TraesCS6A01G188700 chr6D 97.482 2978 38 6 2087 5037 178006246 178003279 0.000000e+00 5049.0
4 TraesCS6A01G188700 chr6D 94.982 1375 25 7 653 2027 178007560 178006230 0.000000e+00 2117.0
5 TraesCS6A01G188700 chr6D 96.941 425 13 0 5035 5459 178000456 178000032 0.000000e+00 713.0
6 TraesCS6A01G188700 chr6D 88.687 495 47 6 99 586 178008238 178007746 3.640000e-166 595.0
7 TraesCS6A01G188700 chr6B 97.410 2896 56 9 2087 4978 295766467 295769347 0.000000e+00 4915.0
8 TraesCS6A01G188700 chr6B 95.285 1421 33 11 621 2026 295765081 295766482 0.000000e+00 2222.0
9 TraesCS6A01G188700 chr6B 83.402 488 57 11 99 580 295763781 295764250 1.090000e-116 431.0
10 TraesCS6A01G188700 chr6B 92.377 223 15 2 4973 5195 295769432 295769652 3.170000e-82 316.0
11 TraesCS6A01G188700 chr6B 93.567 171 7 4 5289 5459 295772664 295772830 9.080000e-63 252.0
12 TraesCS6A01G188700 chr1B 72.585 766 170 29 2883 3631 391573764 391574506 1.190000e-51 215.0
13 TraesCS6A01G188700 chr1B 75.745 235 40 10 343 563 606363759 606363528 9.670000e-18 102.0
14 TraesCS6A01G188700 chr1B 83.951 81 11 2 2664 2743 391573542 391573621 5.860000e-10 76.8
15 TraesCS6A01G188700 chr1D 72.324 766 172 29 2883 3631 290444846 290445588 2.580000e-48 204.0
16 TraesCS6A01G188700 chr1D 76.680 253 42 9 322 560 420094120 420094369 2.060000e-24 124.0
17 TraesCS6A01G188700 chr1D 84.000 75 10 2 2664 2737 290444624 290444697 2.730000e-08 71.3
18 TraesCS6A01G188700 chr7A 90.260 154 14 1 4927 5080 37119351 37119503 3.330000e-47 200.0
19 TraesCS6A01G188700 chr7A 85.890 163 21 2 4920 5080 103151072 103151234 7.270000e-39 172.0
20 TraesCS6A01G188700 chr7A 92.793 111 4 4 1 110 540578108 540578001 2.040000e-34 158.0
21 TraesCS6A01G188700 chr7A 92.593 108 8 0 1 108 377951452 377951345 7.320000e-34 156.0
22 TraesCS6A01G188700 chr7A 91.228 114 8 2 1 112 356146917 356146804 2.630000e-33 154.0
23 TraesCS6A01G188700 chr7A 87.692 130 11 5 1 127 379486641 379486768 4.410000e-31 147.0
24 TraesCS6A01G188700 chr7A 95.455 66 3 0 2020 2085 63357028 63357093 7.480000e-19 106.0
25 TraesCS6A01G188700 chr7A 91.935 62 4 1 2024 2085 595644039 595644099 9.740000e-13 86.1
26 TraesCS6A01G188700 chr1A 72.063 766 174 29 2883 3631 362863724 362864466 5.580000e-45 193.0
27 TraesCS6A01G188700 chr1A 91.150 113 9 1 1 113 518717972 518717861 9.470000e-33 152.0
28 TraesCS6A01G188700 chr1A 80.000 165 28 3 404 566 19306364 19306203 3.450000e-22 117.0
29 TraesCS6A01G188700 chr1A 80.000 165 28 3 404 566 19416994 19416833 3.450000e-22 117.0
30 TraesCS6A01G188700 chr1A 84.000 75 10 2 2664 2737 362863502 362863575 2.730000e-08 71.3
31 TraesCS6A01G188700 chr4D 88.462 156 17 1 4927 5081 117421352 117421197 2.600000e-43 187.0
32 TraesCS6A01G188700 chr4A 88.435 147 16 1 4927 5072 450788272 450788418 5.620000e-40 176.0
33 TraesCS6A01G188700 chr4A 83.146 178 26 4 4908 5081 574285236 574285413 5.660000e-35 159.0
34 TraesCS6A01G188700 chr4A 94.175 103 5 1 1 102 397462537 397462639 7.320000e-34 156.0
35 TraesCS6A01G188700 chr4A 75.573 262 45 12 314 560 737477065 737477322 1.610000e-20 111.0
36 TraesCS6A01G188700 chr4A 93.750 64 3 1 2027 2090 645672965 645672903 1.620000e-15 95.3
37 TraesCS6A01G188700 chr3B 86.792 159 17 4 4925 5081 729603649 729603493 2.020000e-39 174.0
38 TraesCS6A01G188700 chr3B 78.099 242 35 8 329 556 207220800 207220563 2.650000e-28 137.0
39 TraesCS6A01G188700 chr3B 94.915 59 3 0 2027 2085 13419506 13419448 5.820000e-15 93.5
40 TraesCS6A01G188700 chr5B 86.624 157 18 3 4927 5081 665813086 665813241 2.610000e-38 171.0
41 TraesCS6A01G188700 chr2A 95.098 102 5 0 1 102 492753280 492753381 1.570000e-35 161.0
42 TraesCS6A01G188700 chr2A 76.448 259 41 10 314 556 14675773 14675519 7.430000e-24 122.0
43 TraesCS6A01G188700 chr2A 94.828 58 3 0 2028 2085 44794567 44794510 2.090000e-14 91.6
44 TraesCS6A01G188700 chr2B 78.788 165 27 5 395 556 23230880 23230721 2.690000e-18 104.0
45 TraesCS6A01G188700 chr5A 96.610 59 2 0 2027 2085 564979625 564979567 1.250000e-16 99.0
46 TraesCS6A01G188700 chr3D 95.082 61 3 0 2025 2085 363795299 363795359 4.500000e-16 97.1
47 TraesCS6A01G188700 chr7D 92.308 65 3 2 2027 2090 30266911 30266848 2.090000e-14 91.6
48 TraesCS6A01G188700 chr5D 93.333 60 3 1 2027 2085 133866026 133865967 2.710000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G188700 chr6A 230705249 230710707 5458 True 10081.0 10081 100.0000 1 5459 1 chr6A.!!$R2 5458
1 TraesCS6A01G188700 chr6D 178000032 178008238 8206 True 2118.5 5049 94.5230 99 5459 4 chr6D.!!$R1 5360
2 TraesCS6A01G188700 chr6B 295763781 295772830 9049 False 1627.2 4915 92.4082 99 5459 5 chr6B.!!$F1 5360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.101759 ATAGCCGCATCGTACGTGTT 59.898 50.000 16.05 0.0 0.00 3.32 F
504 512 0.239879 ACGTGCATCGCGGAAAATTT 59.760 45.000 6.13 0.0 41.96 1.82 F
801 1678 0.527817 GGTTCTGATCTACCGCACCG 60.528 60.000 0.00 0.0 0.00 4.94 F
1599 2486 0.912486 ACTTCCTCAGCGGCCTAATT 59.088 50.000 0.00 0.0 0.00 1.40 F
2085 2972 0.104855 GAGAGATGCATACGGCCACA 59.895 55.000 2.24 0.0 43.89 4.17 F
2086 2973 0.541392 AGAGATGCATACGGCCACAA 59.459 50.000 2.24 0.0 43.89 3.33 F
2087 2974 1.141657 AGAGATGCATACGGCCACAAT 59.858 47.619 2.24 0.0 43.89 2.71 F
3442 4354 1.216930 GGGGGCAGTGGGTTTATACAT 59.783 52.381 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2953 0.104855 TGTGGCCGTATGCATCTCTC 59.895 55.000 0.19 0.0 43.89 3.20 R
2067 2954 0.541392 TTGTGGCCGTATGCATCTCT 59.459 50.000 0.19 0.0 43.89 3.10 R
2078 2965 0.893270 TCCAGGTGAAATTGTGGCCG 60.893 55.000 0.00 0.0 0.00 6.13 R
2761 3673 1.665169 TCGCCATCAACAACATGATCG 59.335 47.619 0.00 0.0 37.96 3.69 R
3604 4516 3.192001 GCTGAAGCATCTGAATTCCAACA 59.808 43.478 2.27 0.0 41.59 3.33 R
4000 4912 5.604565 CAGAAACCTGCAGAAAGGAAAAAT 58.395 37.500 17.39 0.0 40.02 1.82 R
4311 5223 5.621193 ACTGCATATATACCAAAGACACCC 58.379 41.667 0.00 0.0 0.00 4.61 R
4495 5407 0.039256 TGCAATTTTCAGCGCAGACC 60.039 50.000 11.47 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.607939 TGTAAAGATTATCCCTCTTGCGA 57.392 39.130 0.00 0.00 33.34 5.10
23 24 5.357257 TGTAAAGATTATCCCTCTTGCGAC 58.643 41.667 0.00 0.00 33.34 5.19
24 25 4.487714 AAAGATTATCCCTCTTGCGACA 57.512 40.909 0.00 0.00 33.34 4.35
25 26 4.696479 AAGATTATCCCTCTTGCGACAT 57.304 40.909 0.00 0.00 31.84 3.06
26 27 4.000331 AGATTATCCCTCTTGCGACATG 58.000 45.455 0.00 0.00 0.00 3.21
27 28 1.953559 TTATCCCTCTTGCGACATGC 58.046 50.000 0.00 0.00 46.70 4.06
28 29 0.106708 TATCCCTCTTGCGACATGCC 59.893 55.000 0.00 0.00 45.60 4.40
29 30 1.630126 ATCCCTCTTGCGACATGCCT 61.630 55.000 0.00 0.00 45.60 4.75
30 31 0.975556 TCCCTCTTGCGACATGCCTA 60.976 55.000 0.00 0.00 45.60 3.93
31 32 0.811616 CCCTCTTGCGACATGCCTAC 60.812 60.000 0.00 0.00 45.60 3.18
32 33 0.176680 CCTCTTGCGACATGCCTACT 59.823 55.000 0.00 0.00 45.60 2.57
33 34 1.409064 CCTCTTGCGACATGCCTACTA 59.591 52.381 0.00 0.00 45.60 1.82
34 35 2.036475 CCTCTTGCGACATGCCTACTAT 59.964 50.000 0.00 0.00 45.60 2.12
35 36 3.055591 CTCTTGCGACATGCCTACTATG 58.944 50.000 0.00 0.00 45.60 2.23
36 37 1.528586 CTTGCGACATGCCTACTATGC 59.471 52.381 0.00 0.00 45.60 3.14
37 38 0.597377 TGCGACATGCCTACTATGCG 60.597 55.000 0.00 0.00 45.60 4.73
38 39 0.318699 GCGACATGCCTACTATGCGA 60.319 55.000 0.00 0.00 37.76 5.10
39 40 1.670087 GCGACATGCCTACTATGCGAT 60.670 52.381 0.00 0.00 37.76 4.58
40 41 2.677199 CGACATGCCTACTATGCGATT 58.323 47.619 0.00 0.00 31.50 3.34
41 42 3.833442 CGACATGCCTACTATGCGATTA 58.167 45.455 0.00 0.00 31.50 1.75
42 43 4.424626 CGACATGCCTACTATGCGATTAT 58.575 43.478 0.00 0.00 31.50 1.28
43 44 4.266265 CGACATGCCTACTATGCGATTATG 59.734 45.833 0.00 0.00 31.50 1.90
44 45 3.935203 ACATGCCTACTATGCGATTATGC 59.065 43.478 0.00 0.00 0.00 3.14
45 46 2.972625 TGCCTACTATGCGATTATGCC 58.027 47.619 0.00 0.00 0.00 4.40
46 47 2.567169 TGCCTACTATGCGATTATGCCT 59.433 45.455 0.00 0.00 0.00 4.75
47 48 3.190874 GCCTACTATGCGATTATGCCTC 58.809 50.000 0.00 0.00 0.00 4.70
48 49 3.118956 GCCTACTATGCGATTATGCCTCT 60.119 47.826 0.00 0.00 0.00 3.69
49 50 4.098044 GCCTACTATGCGATTATGCCTCTA 59.902 45.833 0.00 0.00 0.00 2.43
50 51 5.394224 GCCTACTATGCGATTATGCCTCTAA 60.394 44.000 0.00 0.00 0.00 2.10
51 52 6.269315 CCTACTATGCGATTATGCCTCTAAG 58.731 44.000 0.00 0.00 0.00 2.18
52 53 5.730296 ACTATGCGATTATGCCTCTAAGT 57.270 39.130 0.00 0.00 0.00 2.24
53 54 5.715070 ACTATGCGATTATGCCTCTAAGTC 58.285 41.667 0.00 0.00 0.00 3.01
54 55 3.013276 TGCGATTATGCCTCTAAGTCG 57.987 47.619 0.00 0.00 0.00 4.18
55 56 2.361119 TGCGATTATGCCTCTAAGTCGT 59.639 45.455 0.00 0.00 0.00 4.34
56 57 2.726760 GCGATTATGCCTCTAAGTCGTG 59.273 50.000 0.00 0.00 0.00 4.35
57 58 2.726760 CGATTATGCCTCTAAGTCGTGC 59.273 50.000 0.00 0.00 0.00 5.34
58 59 3.551046 CGATTATGCCTCTAAGTCGTGCT 60.551 47.826 0.00 0.00 0.00 4.40
59 60 3.438297 TTATGCCTCTAAGTCGTGCTC 57.562 47.619 0.00 0.00 0.00 4.26
60 61 0.461961 ATGCCTCTAAGTCGTGCTCC 59.538 55.000 0.00 0.00 0.00 4.70
61 62 1.226717 GCCTCTAAGTCGTGCTCCG 60.227 63.158 0.00 0.00 38.13 4.63
62 63 1.654954 GCCTCTAAGTCGTGCTCCGA 61.655 60.000 0.00 0.00 45.00 4.55
71 72 3.986006 GTGCTCCGACACGTGGGA 61.986 66.667 21.57 16.34 36.07 4.37
76 77 3.507675 TCCGACACGTGGGAGATAT 57.492 52.632 21.57 0.00 32.32 1.63
77 78 2.643995 TCCGACACGTGGGAGATATA 57.356 50.000 21.57 0.00 32.32 0.86
78 79 2.501261 TCCGACACGTGGGAGATATAG 58.499 52.381 21.57 0.00 32.32 1.31
79 80 1.068472 CCGACACGTGGGAGATATAGC 60.068 57.143 21.57 0.00 0.00 2.97
80 81 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
81 82 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
82 83 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
83 84 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
84 85 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
85 86 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
86 87 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
87 88 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
88 89 2.022195 GGGAGATATAGCCGCATCGTA 58.978 52.381 0.00 0.00 0.00 3.43
89 90 2.223525 GGGAGATATAGCCGCATCGTAC 60.224 54.545 0.00 0.00 0.00 3.67
90 91 2.539142 GGAGATATAGCCGCATCGTACG 60.539 54.545 9.53 9.53 0.00 3.67
91 92 2.082231 AGATATAGCCGCATCGTACGT 58.918 47.619 16.05 0.00 0.00 3.57
92 93 2.159558 AGATATAGCCGCATCGTACGTG 60.160 50.000 16.05 13.53 0.00 4.49
93 94 0.946528 TATAGCCGCATCGTACGTGT 59.053 50.000 16.05 2.44 0.00 4.49
94 95 0.101759 ATAGCCGCATCGTACGTGTT 59.898 50.000 16.05 0.00 0.00 3.32
95 96 0.799152 TAGCCGCATCGTACGTGTTG 60.799 55.000 16.05 12.40 0.00 3.33
96 97 2.394136 CCGCATCGTACGTGTTGC 59.606 61.111 21.86 21.86 0.00 4.17
97 98 2.376538 CCGCATCGTACGTGTTGCA 61.377 57.895 26.98 7.72 34.80 4.08
118 119 4.172512 AGCATCCTGCCTCGGCTG 62.173 66.667 9.65 8.63 46.52 4.85
176 177 1.033574 GTAGAGACCCATGGGAGTCG 58.966 60.000 38.07 10.87 38.08 4.18
210 214 1.450848 ACGTCATCCCTACGAGCGA 60.451 57.895 2.27 0.00 42.90 4.93
280 284 3.183775 GTGCGATTTGTTACAACTCGACT 59.816 43.478 31.59 1.59 0.00 4.18
287 291 6.483385 TTTGTTACAACTCGACTCAAAACA 57.517 33.333 0.00 0.00 0.00 2.83
288 292 6.671614 TTGTTACAACTCGACTCAAAACAT 57.328 33.333 0.00 0.00 0.00 2.71
361 367 3.565516 CGCTCATGTATACGCACATACT 58.434 45.455 0.00 0.00 37.02 2.12
362 368 3.981416 CGCTCATGTATACGCACATACTT 59.019 43.478 0.00 0.00 37.02 2.24
414 421 1.705873 ACCCTTATAGACTGAGCCGG 58.294 55.000 0.00 0.00 0.00 6.13
423 430 1.696336 AGACTGAGCCGGCATATCATT 59.304 47.619 31.54 17.84 0.00 2.57
428 435 3.286353 TGAGCCGGCATATCATTTTGAA 58.714 40.909 31.54 0.00 0.00 2.69
454 461 1.539065 CGAAGTCATCATAGGCGCCTT 60.539 52.381 37.74 19.80 0.00 4.35
455 462 2.288213 CGAAGTCATCATAGGCGCCTTA 60.288 50.000 37.74 21.21 0.00 2.69
478 485 1.836555 GTCGACGAAAACGTATCCTCG 59.163 52.381 0.00 12.96 37.33 4.63
496 504 0.647663 CGTATTGAACGTGCATCGCG 60.648 55.000 0.00 0.00 46.72 5.87
498 506 0.458716 TATTGAACGTGCATCGCGGA 60.459 50.000 6.13 0.00 41.96 5.54
504 512 0.239879 ACGTGCATCGCGGAAAATTT 59.760 45.000 6.13 0.00 41.96 1.82
505 513 1.335506 ACGTGCATCGCGGAAAATTTT 60.336 42.857 6.13 2.28 41.96 1.82
532 541 8.030106 CCTTAAATACAACCGGAAAAATGCTAA 58.970 33.333 9.46 0.00 0.00 3.09
567 576 2.028385 ACCGTGGTGGACTGAGAATAAC 60.028 50.000 0.00 0.00 42.00 1.89
608 702 6.627395 ACAAATTAAGTCGTGGAAATCACA 57.373 33.333 0.00 0.00 46.36 3.58
679 1556 3.891586 TTGTCGTCACTCTCGCGGC 62.892 63.158 6.13 0.00 0.00 6.53
801 1678 0.527817 GGTTCTGATCTACCGCACCG 60.528 60.000 0.00 0.00 0.00 4.94
915 1792 9.688592 GATTTTTCATCTAAATAATCCCAGCTG 57.311 33.333 6.78 6.78 0.00 4.24
1141 2018 1.272212 CGGTGAATTTGGGGTTCTTGG 59.728 52.381 0.00 0.00 0.00 3.61
1198 2075 7.411274 CAGATGCTGTTCAGTACTACTACTAC 58.589 42.308 0.00 0.00 31.46 2.73
1264 2141 5.351458 AGCAAACTGATGACTTGTTTTTCC 58.649 37.500 0.00 0.00 32.42 3.13
1265 2142 5.127682 AGCAAACTGATGACTTGTTTTTCCT 59.872 36.000 0.00 0.00 32.42 3.36
1266 2143 5.812127 GCAAACTGATGACTTGTTTTTCCTT 59.188 36.000 0.00 0.00 32.42 3.36
1267 2144 6.237915 GCAAACTGATGACTTGTTTTTCCTTG 60.238 38.462 0.00 0.00 32.42 3.61
1375 2262 7.829378 ACTTGCTATCCTTTACTTTTACTCG 57.171 36.000 0.00 0.00 0.00 4.18
1396 2283 3.338249 GAGGCACAGATTAACAGAGCAA 58.662 45.455 0.00 0.00 0.00 3.91
1599 2486 0.912486 ACTTCCTCAGCGGCCTAATT 59.088 50.000 0.00 0.00 0.00 1.40
1833 2720 5.128205 TCACCTGATTGGAGAATTATGCTG 58.872 41.667 0.00 0.00 39.71 4.41
1854 2741 0.966920 GGGTTCTCTCAGTTCCGTCA 59.033 55.000 0.00 0.00 0.00 4.35
1867 2754 5.355630 TCAGTTCCGTCATTGTTTTTCTTCA 59.644 36.000 0.00 0.00 0.00 3.02
2015 2902 8.634335 TCACTCAAAACTCCATATTCATTTCA 57.366 30.769 0.00 0.00 0.00 2.69
2016 2903 8.514594 TCACTCAAAACTCCATATTCATTTCAC 58.485 33.333 0.00 0.00 0.00 3.18
2017 2904 7.756722 CACTCAAAACTCCATATTCATTTCACC 59.243 37.037 0.00 0.00 0.00 4.02
2018 2905 7.671398 ACTCAAAACTCCATATTCATTTCACCT 59.329 33.333 0.00 0.00 0.00 4.00
2019 2906 7.829725 TCAAAACTCCATATTCATTTCACCTG 58.170 34.615 0.00 0.00 0.00 4.00
2020 2907 6.780457 AAACTCCATATTCATTTCACCTGG 57.220 37.500 0.00 0.00 0.00 4.45
2021 2908 5.715439 ACTCCATATTCATTTCACCTGGA 57.285 39.130 0.00 0.00 0.00 3.86
2022 2909 6.271585 ACTCCATATTCATTTCACCTGGAT 57.728 37.500 0.00 0.00 31.35 3.41
2023 2910 6.676558 ACTCCATATTCATTTCACCTGGATT 58.323 36.000 0.00 0.00 31.35 3.01
2024 2911 6.548622 ACTCCATATTCATTTCACCTGGATTG 59.451 38.462 0.00 0.00 31.35 2.67
2025 2912 5.302568 TCCATATTCATTTCACCTGGATTGC 59.697 40.000 0.00 0.00 0.00 3.56
2026 2913 5.303589 CCATATTCATTTCACCTGGATTGCT 59.696 40.000 0.00 0.00 0.00 3.91
2027 2914 6.183360 CCATATTCATTTCACCTGGATTGCTT 60.183 38.462 0.00 0.00 0.00 3.91
2028 2915 5.750352 ATTCATTTCACCTGGATTGCTTT 57.250 34.783 0.00 0.00 0.00 3.51
2029 2916 5.549742 TTCATTTCACCTGGATTGCTTTT 57.450 34.783 0.00 0.00 0.00 2.27
2030 2917 5.549742 TCATTTCACCTGGATTGCTTTTT 57.450 34.783 0.00 0.00 0.00 1.94
2050 2937 2.319025 TTTGGAAAAGGGGGACATCC 57.681 50.000 0.00 0.00 0.00 3.51
2060 2947 3.866582 GGACATCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
2061 2948 4.554036 GACATCCCCGGCCTCTGC 62.554 72.222 0.00 0.00 0.00 4.26
2063 2950 3.882326 CATCCCCGGCCTCTGCAT 61.882 66.667 0.00 0.00 40.13 3.96
2064 2951 3.564218 ATCCCCGGCCTCTGCATC 61.564 66.667 0.00 0.00 40.13 3.91
2068 2955 4.598894 CCGGCCTCTGCATCGGAG 62.599 72.222 0.00 0.20 42.71 4.63
2069 2956 3.531207 CGGCCTCTGCATCGGAGA 61.531 66.667 0.00 0.00 39.05 3.71
2070 2957 2.420890 GGCCTCTGCATCGGAGAG 59.579 66.667 5.61 5.61 43.63 3.20
2071 2958 2.130426 GGCCTCTGCATCGGAGAGA 61.130 63.158 13.41 0.00 43.63 3.10
2072 2959 1.470996 GGCCTCTGCATCGGAGAGAT 61.471 60.000 13.41 0.00 43.63 2.75
2081 2968 0.244994 ATCGGAGAGATGCATACGGC 59.755 55.000 0.00 0.00 43.63 5.68
2082 2969 1.373497 CGGAGAGATGCATACGGCC 60.373 63.158 0.00 0.00 43.89 6.13
2083 2970 1.748403 GGAGAGATGCATACGGCCA 59.252 57.895 2.24 0.00 43.89 5.36
2084 2971 0.601311 GGAGAGATGCATACGGCCAC 60.601 60.000 2.24 0.00 43.89 5.01
2085 2972 0.104855 GAGAGATGCATACGGCCACA 59.895 55.000 2.24 0.00 43.89 4.17
2086 2973 0.541392 AGAGATGCATACGGCCACAA 59.459 50.000 2.24 0.00 43.89 3.33
2087 2974 1.141657 AGAGATGCATACGGCCACAAT 59.858 47.619 2.24 0.00 43.89 2.71
2088 2975 1.949525 GAGATGCATACGGCCACAATT 59.050 47.619 2.24 0.00 43.89 2.32
2089 2976 2.358898 GAGATGCATACGGCCACAATTT 59.641 45.455 2.24 0.00 43.89 1.82
2090 2977 2.358898 AGATGCATACGGCCACAATTTC 59.641 45.455 2.24 0.00 43.89 2.17
2151 3038 6.238842 CCCTGATAGTGGATTGCAATTAGTTG 60.239 42.308 14.33 0.00 38.39 3.16
2320 3208 4.566545 TTCATGTTGGTACTTTGCACAG 57.433 40.909 0.00 0.00 0.00 3.66
2406 3294 3.057736 CCTTGTTGACAAAGCTCAGATGG 60.058 47.826 0.00 0.00 35.15 3.51
3442 4354 1.216930 GGGGGCAGTGGGTTTATACAT 59.783 52.381 0.00 0.00 0.00 2.29
3604 4516 2.950172 GCGTGCATTGTTCGTCGGT 61.950 57.895 0.00 0.00 0.00 4.69
3799 4711 2.282040 GAGCAAGCTGGTGTGGCT 60.282 61.111 0.00 1.35 42.31 4.75
3965 4877 7.281774 TGCTTTGGAATCTCAATTCTCAGTATC 59.718 37.037 0.00 0.00 40.99 2.24
3990 4902 3.735746 CACTTTTTCCGATCAAACAAGGC 59.264 43.478 8.01 0.00 0.00 4.35
4000 4912 7.284074 TCCGATCAAACAAGGCCTTATTATTA 58.716 34.615 20.00 2.56 0.00 0.98
4311 5223 2.478134 GCTGAATGCTATTGGTCTAGCG 59.522 50.000 0.00 0.00 45.78 4.26
4491 5403 3.679502 AGCTTTGTTTTCAGTTTGCACAC 59.320 39.130 0.00 0.00 0.00 3.82
4492 5404 3.679502 GCTTTGTTTTCAGTTTGCACACT 59.320 39.130 0.00 0.00 0.00 3.55
4493 5405 4.434593 GCTTTGTTTTCAGTTTGCACACTG 60.435 41.667 24.06 24.06 44.96 3.66
4494 5406 2.605030 TGTTTTCAGTTTGCACACTGC 58.395 42.857 24.99 13.30 43.51 4.40
4582 5494 1.276421 TGAGACAGCTACCCAAAGAGC 59.724 52.381 0.00 0.00 39.08 4.09
4647 5559 3.392947 TGCCCCCATTTCATCGTCTATTA 59.607 43.478 0.00 0.00 0.00 0.98
4693 5605 2.829720 TCGTCATTAGTTGCTGTAGGGT 59.170 45.455 0.00 0.00 0.00 4.34
4725 5637 7.044798 ACTTGCTAATCTGATTCTGAACTACC 58.955 38.462 6.10 0.00 0.00 3.18
5037 6042 4.998033 TCACACATTTTGCTCCGTATGTAA 59.002 37.500 0.00 0.00 30.53 2.41
5171 9001 5.924254 TCTTATTATATTGGCGACTTCGTGG 59.076 40.000 0.00 0.00 42.22 4.94
5177 9007 3.112709 GCGACTTCGTGGCACTCC 61.113 66.667 16.72 0.00 42.22 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.607939 TCGCAAGAGGGATAATCTTTACA 57.392 39.130 0.00 0.00 45.01 2.41
16 17 1.528586 GCATAGTAGGCATGTCGCAAG 59.471 52.381 1.05 0.00 45.17 4.01
17 18 1.581934 GCATAGTAGGCATGTCGCAA 58.418 50.000 1.05 0.00 45.17 4.85
18 19 0.597377 CGCATAGTAGGCATGTCGCA 60.597 55.000 7.67 0.00 45.17 5.10
19 20 0.318699 TCGCATAGTAGGCATGTCGC 60.319 55.000 7.67 0.00 41.28 5.19
20 21 2.354109 ATCGCATAGTAGGCATGTCG 57.646 50.000 7.67 0.00 0.00 4.35
21 22 4.033358 GCATAATCGCATAGTAGGCATGTC 59.967 45.833 7.67 0.00 35.63 3.06
22 23 3.935203 GCATAATCGCATAGTAGGCATGT 59.065 43.478 7.67 0.00 35.63 3.21
23 24 3.310774 GGCATAATCGCATAGTAGGCATG 59.689 47.826 7.67 4.25 37.19 4.06
24 25 3.198635 AGGCATAATCGCATAGTAGGCAT 59.801 43.478 7.67 0.00 37.19 4.40
25 26 2.567169 AGGCATAATCGCATAGTAGGCA 59.433 45.455 7.67 0.00 37.19 4.75
26 27 3.118956 AGAGGCATAATCGCATAGTAGGC 60.119 47.826 0.00 0.00 34.86 3.93
27 28 4.727507 AGAGGCATAATCGCATAGTAGG 57.272 45.455 0.00 0.00 0.00 3.18
28 29 6.857956 ACTTAGAGGCATAATCGCATAGTAG 58.142 40.000 0.00 0.00 0.00 2.57
29 30 6.403309 CGACTTAGAGGCATAATCGCATAGTA 60.403 42.308 0.00 0.00 0.00 1.82
30 31 5.620205 CGACTTAGAGGCATAATCGCATAGT 60.620 44.000 0.00 0.00 0.00 2.12
31 32 4.795795 CGACTTAGAGGCATAATCGCATAG 59.204 45.833 0.00 0.00 0.00 2.23
32 33 4.217767 ACGACTTAGAGGCATAATCGCATA 59.782 41.667 0.00 0.00 0.00 3.14
33 34 3.005897 ACGACTTAGAGGCATAATCGCAT 59.994 43.478 0.00 0.00 0.00 4.73
34 35 2.361119 ACGACTTAGAGGCATAATCGCA 59.639 45.455 0.00 0.00 0.00 5.10
35 36 2.726760 CACGACTTAGAGGCATAATCGC 59.273 50.000 0.00 0.00 0.00 4.58
36 37 2.726760 GCACGACTTAGAGGCATAATCG 59.273 50.000 0.00 0.00 0.00 3.34
37 38 3.983741 AGCACGACTTAGAGGCATAATC 58.016 45.455 0.00 0.00 0.00 1.75
38 39 3.243907 GGAGCACGACTTAGAGGCATAAT 60.244 47.826 0.00 0.00 0.00 1.28
39 40 2.100916 GGAGCACGACTTAGAGGCATAA 59.899 50.000 0.00 0.00 0.00 1.90
40 41 1.681793 GGAGCACGACTTAGAGGCATA 59.318 52.381 0.00 0.00 0.00 3.14
41 42 0.461961 GGAGCACGACTTAGAGGCAT 59.538 55.000 0.00 0.00 0.00 4.40
42 43 1.890894 GGAGCACGACTTAGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
43 44 4.816990 GGAGCACGACTTAGAGGC 57.183 61.111 0.00 0.00 0.00 4.70
54 55 3.916392 CTCCCACGTGTCGGAGCAC 62.916 68.421 22.68 0.00 39.36 4.40
55 56 3.680786 CTCCCACGTGTCGGAGCA 61.681 66.667 22.68 0.35 39.36 4.26
56 57 1.381928 TATCTCCCACGTGTCGGAGC 61.382 60.000 27.01 0.00 44.61 4.70
57 58 1.319541 ATATCTCCCACGTGTCGGAG 58.680 55.000 26.30 26.30 46.07 4.63
58 59 2.501261 CTATATCTCCCACGTGTCGGA 58.499 52.381 15.65 13.73 0.00 4.55
59 60 1.068472 GCTATATCTCCCACGTGTCGG 60.068 57.143 15.65 9.74 0.00 4.79
60 61 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
61 62 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
62 63 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
63 64 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
64 65 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
65 66 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
66 67 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
67 68 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
68 69 0.818296 ACGATGCGGCTATATCTCCC 59.182 55.000 0.00 0.00 0.00 4.30
69 70 2.539142 CGTACGATGCGGCTATATCTCC 60.539 54.545 10.44 0.00 0.00 3.71
70 71 2.095532 ACGTACGATGCGGCTATATCTC 59.904 50.000 24.41 0.00 0.00 2.75
71 72 2.082231 ACGTACGATGCGGCTATATCT 58.918 47.619 24.41 0.00 0.00 1.98
72 73 2.174764 CACGTACGATGCGGCTATATC 58.825 52.381 24.41 0.00 0.00 1.63
73 74 1.538512 ACACGTACGATGCGGCTATAT 59.461 47.619 24.41 0.00 0.00 0.86
74 75 0.946528 ACACGTACGATGCGGCTATA 59.053 50.000 24.41 0.00 0.00 1.31
75 76 0.101759 AACACGTACGATGCGGCTAT 59.898 50.000 24.41 0.00 0.00 2.97
76 77 0.799152 CAACACGTACGATGCGGCTA 60.799 55.000 24.41 0.00 0.00 3.93
77 78 2.092291 CAACACGTACGATGCGGCT 61.092 57.895 24.41 0.00 0.00 5.52
78 79 2.394136 CAACACGTACGATGCGGC 59.606 61.111 24.41 0.00 0.00 6.53
79 80 2.376538 TGCAACACGTACGATGCGG 61.377 57.895 24.41 12.34 41.61 5.69
80 81 1.225368 GTGCAACACGTACGATGCG 60.225 57.895 24.41 11.81 41.61 4.73
81 82 1.131826 GGTGCAACACGTACGATGC 59.868 57.895 24.41 25.74 39.98 3.91
82 83 1.785321 GGGTGCAACACGTACGATG 59.215 57.895 24.41 17.98 39.98 3.84
83 84 4.272100 GGGTGCAACACGTACGAT 57.728 55.556 24.41 6.62 39.98 3.73
210 214 1.599047 CGAACTGATGAGTGGGGCT 59.401 57.895 0.00 0.00 30.61 5.19
240 244 3.432252 CGCACTAATTCTCGTTTGAACCT 59.568 43.478 0.00 0.00 0.00 3.50
320 326 3.915569 GCGGTTGCGTTTGTATTGTATTT 59.084 39.130 0.00 0.00 0.00 1.40
361 367 4.868171 GTGTATGCGTTCATAGAGGTGAAA 59.132 41.667 0.00 0.00 39.61 2.69
362 368 4.430007 GTGTATGCGTTCATAGAGGTGAA 58.570 43.478 0.00 0.00 35.96 3.18
386 392 6.750351 GCTCAGTCTATAAGGGTAGGGATGTA 60.750 46.154 0.00 0.00 0.00 2.29
390 396 3.181420 GGCTCAGTCTATAAGGGTAGGGA 60.181 52.174 0.00 0.00 0.00 4.20
414 421 8.398491 ACTTCGTCAATTTCAAAATGATATGC 57.602 30.769 0.00 0.00 0.00 3.14
423 430 7.626240 GCCTATGATGACTTCGTCAATTTCAAA 60.626 37.037 5.26 0.00 45.96 2.69
428 435 3.804325 CGCCTATGATGACTTCGTCAATT 59.196 43.478 5.26 0.00 45.96 2.32
478 485 0.315059 CCGCGATGCACGTTCAATAC 60.315 55.000 8.23 0.00 44.60 1.89
498 506 9.833917 TTTCCGGTTGTATTTAAGGAAAATTTT 57.166 25.926 2.28 2.28 42.55 1.82
504 512 6.869388 GCATTTTTCCGGTTGTATTTAAGGAA 59.131 34.615 0.00 0.00 36.15 3.36
505 513 6.209788 AGCATTTTTCCGGTTGTATTTAAGGA 59.790 34.615 0.00 0.00 0.00 3.36
509 517 7.808856 GTGTTAGCATTTTTCCGGTTGTATTTA 59.191 33.333 0.00 0.00 0.00 1.40
517 525 2.556622 CTGGTGTTAGCATTTTTCCGGT 59.443 45.455 0.00 0.00 0.00 5.28
521 529 2.562738 AGCCCTGGTGTTAGCATTTTTC 59.437 45.455 0.00 0.00 0.00 2.29
532 541 2.113139 CGGTTCAAGCCCTGGTGT 59.887 61.111 0.00 0.00 0.00 4.16
576 645 7.833786 TCCACGACTTAATTTGTACAGAGTAT 58.166 34.615 0.00 0.00 0.00 2.12
580 649 7.658167 TGATTTCCACGACTTAATTTGTACAGA 59.342 33.333 0.00 0.00 0.00 3.41
581 650 7.744715 GTGATTTCCACGACTTAATTTGTACAG 59.255 37.037 0.00 0.00 35.86 2.74
582 651 7.577979 GTGATTTCCACGACTTAATTTGTACA 58.422 34.615 0.00 0.00 35.86 2.90
608 702 6.485830 ACAGCTGTATATAATCGGCCATAT 57.514 37.500 20.16 0.58 36.71 1.78
699 1576 2.096218 CGGAAAAGAAGAAGACAAGGCG 60.096 50.000 0.00 0.00 0.00 5.52
801 1678 3.216292 GGTGTGGTGTGGTGGTGC 61.216 66.667 0.00 0.00 0.00 5.01
915 1792 0.535553 TAAACGAACCAGCCACCACC 60.536 55.000 0.00 0.00 0.00 4.61
1130 2007 0.187361 CTCCCAAACCAAGAACCCCA 59.813 55.000 0.00 0.00 0.00 4.96
1141 2018 7.110810 ACTACTTATAAAGGAAGCTCCCAAAC 58.889 38.462 0.00 0.00 37.19 2.93
1264 2141 2.296190 GGTGTTGCTTTTAGGGTCCAAG 59.704 50.000 0.00 0.00 0.00 3.61
1265 2142 2.312390 GGTGTTGCTTTTAGGGTCCAA 58.688 47.619 0.00 0.00 0.00 3.53
1266 2143 1.816183 CGGTGTTGCTTTTAGGGTCCA 60.816 52.381 0.00 0.00 0.00 4.02
1267 2144 0.879090 CGGTGTTGCTTTTAGGGTCC 59.121 55.000 0.00 0.00 0.00 4.46
1375 2262 2.977914 TGCTCTGTTAATCTGTGCCTC 58.022 47.619 0.00 0.00 34.95 4.70
1396 2283 1.202698 AGCACCTGAAGACGAAAAGCT 60.203 47.619 0.00 0.00 0.00 3.74
1719 2606 2.642254 CGTGTTGAGCCGTCCCCTA 61.642 63.158 0.00 0.00 0.00 3.53
1833 2720 1.192803 ACGGAACTGAGAGAACCCCC 61.193 60.000 0.00 0.00 0.00 5.40
1854 2741 6.391227 ACCGTCAAGATGAAGAAAAACAAT 57.609 33.333 0.00 0.00 0.00 2.71
2029 2916 2.976185 GGATGTCCCCCTTTTCCAAAAA 59.024 45.455 0.00 0.00 0.00 1.94
2030 2917 2.615391 GGATGTCCCCCTTTTCCAAAA 58.385 47.619 0.00 0.00 0.00 2.44
2031 2918 2.319025 GGATGTCCCCCTTTTCCAAA 57.681 50.000 0.00 0.00 0.00 3.28
2043 2930 3.866582 CAGAGGCCGGGGATGTCC 61.867 72.222 2.18 0.00 0.00 4.02
2044 2931 4.554036 GCAGAGGCCGGGGATGTC 62.554 72.222 2.18 0.00 0.00 3.06
2046 2933 3.839353 GATGCAGAGGCCGGGGATG 62.839 68.421 2.18 0.00 40.13 3.51
2047 2934 3.564218 GATGCAGAGGCCGGGGAT 61.564 66.667 2.18 0.00 40.13 3.85
2051 2938 4.598894 CTCCGATGCAGAGGCCGG 62.599 72.222 0.00 0.00 43.53 6.13
2052 2939 3.496875 CTCTCCGATGCAGAGGCCG 62.497 68.421 0.00 0.42 40.13 6.13
2053 2940 1.470996 ATCTCTCCGATGCAGAGGCC 61.471 60.000 0.00 0.00 38.39 5.19
2054 2941 0.319727 CATCTCTCCGATGCAGAGGC 60.320 60.000 5.43 0.00 42.75 4.70
2055 2942 3.890145 CATCTCTCCGATGCAGAGG 57.110 57.895 3.99 3.99 42.75 3.69
2062 2949 0.244994 GCCGTATGCATCTCTCCGAT 59.755 55.000 0.19 0.00 40.77 4.18
2063 2950 1.660355 GCCGTATGCATCTCTCCGA 59.340 57.895 0.19 0.00 40.77 4.55
2064 2951 1.373497 GGCCGTATGCATCTCTCCG 60.373 63.158 0.19 0.00 43.89 4.63
2065 2952 0.601311 GTGGCCGTATGCATCTCTCC 60.601 60.000 0.19 1.49 43.89 3.71
2066 2953 0.104855 TGTGGCCGTATGCATCTCTC 59.895 55.000 0.19 0.00 43.89 3.20
2067 2954 0.541392 TTGTGGCCGTATGCATCTCT 59.459 50.000 0.19 0.00 43.89 3.10
2068 2955 1.597742 ATTGTGGCCGTATGCATCTC 58.402 50.000 0.19 0.00 43.89 2.75
2069 2956 2.057137 AATTGTGGCCGTATGCATCT 57.943 45.000 0.19 0.00 43.89 2.90
2070 2957 2.098934 TGAAATTGTGGCCGTATGCATC 59.901 45.455 0.19 0.00 43.89 3.91
2071 2958 2.098614 TGAAATTGTGGCCGTATGCAT 58.901 42.857 3.79 3.79 43.89 3.96
2072 2959 1.201181 GTGAAATTGTGGCCGTATGCA 59.799 47.619 0.00 0.00 43.89 3.96
2073 2960 1.469079 GGTGAAATTGTGGCCGTATGC 60.469 52.381 0.00 0.00 40.16 3.14
2074 2961 2.091541 AGGTGAAATTGTGGCCGTATG 58.908 47.619 0.00 0.00 0.00 2.39
2075 2962 2.091541 CAGGTGAAATTGTGGCCGTAT 58.908 47.619 0.00 0.00 0.00 3.06
2076 2963 1.529226 CAGGTGAAATTGTGGCCGTA 58.471 50.000 0.00 0.00 0.00 4.02
2077 2964 1.178534 CCAGGTGAAATTGTGGCCGT 61.179 55.000 0.00 0.00 0.00 5.68
2078 2965 0.893270 TCCAGGTGAAATTGTGGCCG 60.893 55.000 0.00 0.00 0.00 6.13
2079 2966 1.560505 ATCCAGGTGAAATTGTGGCC 58.439 50.000 0.00 0.00 0.00 5.36
2080 2967 2.932187 GCAATCCAGGTGAAATTGTGGC 60.932 50.000 1.59 0.00 33.82 5.01
2081 2968 2.564062 AGCAATCCAGGTGAAATTGTGG 59.436 45.455 1.59 0.00 33.82 4.17
2082 2969 3.947910 AGCAATCCAGGTGAAATTGTG 57.052 42.857 1.59 0.00 33.82 3.33
2083 2970 4.406456 TGTAGCAATCCAGGTGAAATTGT 58.594 39.130 1.59 0.00 33.82 2.71
2084 2971 4.701651 TCTGTAGCAATCCAGGTGAAATTG 59.298 41.667 0.00 0.00 34.30 2.32
2085 2972 4.922206 TCTGTAGCAATCCAGGTGAAATT 58.078 39.130 0.00 0.00 0.00 1.82
2086 2973 4.574674 TCTGTAGCAATCCAGGTGAAAT 57.425 40.909 0.00 0.00 0.00 2.17
2087 2974 4.072131 GTTCTGTAGCAATCCAGGTGAAA 58.928 43.478 0.00 0.00 0.00 2.69
2088 2975 3.559171 GGTTCTGTAGCAATCCAGGTGAA 60.559 47.826 0.00 0.00 0.00 3.18
2089 2976 2.027192 GGTTCTGTAGCAATCCAGGTGA 60.027 50.000 0.00 0.00 0.00 4.02
2090 2977 2.359900 GGTTCTGTAGCAATCCAGGTG 58.640 52.381 0.00 0.00 0.00 4.00
2320 3208 4.734917 ACTACTACTTCGACATTCTGTGC 58.265 43.478 0.00 0.00 0.00 4.57
2406 3294 3.886123 ACCAACCAATATAGCCACAGTC 58.114 45.455 0.00 0.00 0.00 3.51
2531 3419 8.187913 TGTGAAATCATTTTTGAGGAATACCA 57.812 30.769 0.00 0.00 38.94 3.25
2537 3425 6.867816 CCGAATTGTGAAATCATTTTTGAGGA 59.132 34.615 0.00 0.00 0.00 3.71
2761 3673 1.665169 TCGCCATCAACAACATGATCG 59.335 47.619 0.00 0.00 37.96 3.69
3112 4024 6.294564 GGCTATGGACATTATCTTCGTAGTCA 60.295 42.308 0.00 0.00 0.00 3.41
3604 4516 3.192001 GCTGAAGCATCTGAATTCCAACA 59.808 43.478 2.27 0.00 41.59 3.33
3965 4877 5.630680 CCTTGTTTGATCGGAAAAAGTGATG 59.369 40.000 9.46 0.00 0.00 3.07
4000 4912 5.604565 CAGAAACCTGCAGAAAGGAAAAAT 58.395 37.500 17.39 0.00 40.02 1.82
4311 5223 5.621193 ACTGCATATATACCAAAGACACCC 58.379 41.667 0.00 0.00 0.00 4.61
4347 5259 1.414919 AGGTAGACGAACACAAAGGCA 59.585 47.619 0.00 0.00 0.00 4.75
4494 5406 1.067199 GCAATTTTCAGCGCAGACCG 61.067 55.000 11.47 0.00 40.75 4.79
4495 5407 0.039256 TGCAATTTTCAGCGCAGACC 60.039 50.000 11.47 0.00 0.00 3.85
4496 5408 1.769733 TTGCAATTTTCAGCGCAGAC 58.230 45.000 11.47 0.00 35.47 3.51
4497 5409 2.505628 TTTGCAATTTTCAGCGCAGA 57.494 40.000 11.47 3.41 35.47 4.26
4582 5494 0.530744 TTCCCGTTCCTCGTGATGAG 59.469 55.000 0.00 0.00 44.83 2.90
4693 5605 7.445096 TCAGAATCAGATTAGCAAGTTGAACAA 59.555 33.333 7.16 0.00 0.00 2.83
4725 5637 5.739752 TCTTTATTTCGGACATCAGCATG 57.260 39.130 0.00 0.00 35.92 4.06
4765 5677 4.782019 AGAAAGTTTGCAAGTTGACACA 57.218 36.364 7.16 0.00 0.00 3.72
5004 6009 3.751621 CAAAATGTGTGAATCTCGCTCC 58.248 45.455 0.00 0.00 0.00 4.70
5077 8907 8.515414 AGAAATTATTTGCAACTTCAGTACTCC 58.485 33.333 0.00 0.00 0.00 3.85
5164 8994 1.021202 TTGTTTGGAGTGCCACGAAG 58.979 50.000 0.00 0.00 45.94 3.79
5171 9001 2.548875 TGCAAATGTTGTTTGGAGTGC 58.451 42.857 3.09 0.00 0.00 4.40
5177 9007 6.687653 TCGTCATATTGCAAATGTTGTTTG 57.312 33.333 1.71 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.