Multiple sequence alignment - TraesCS6A01G188500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G188500 chr6A 100.000 2955 0 0 1 2955 230538061 230541015 0.000000e+00 5457.0
1 TraesCS6A01G188500 chr6A 92.202 2847 186 17 1 2845 239768911 239766099 0.000000e+00 3995.0
2 TraesCS6A01G188500 chr6A 93.137 510 33 2 2167 2676 356696267 356695760 0.000000e+00 747.0
3 TraesCS6A01G188500 chr6A 92.650 517 25 10 2162 2676 356783211 356782706 0.000000e+00 732.0
4 TraesCS6A01G188500 chr6A 91.329 519 22 13 2162 2676 356738373 356737874 0.000000e+00 688.0
5 TraesCS6A01G188500 chr6A 78.759 1144 151 54 35 1136 305861032 305859939 0.000000e+00 682.0
6 TraesCS6A01G188500 chr6A 92.857 98 6 1 1927 2023 268221142 268221045 1.100000e-29 141.0
7 TraesCS6A01G188500 chr6A 92.857 98 6 1 1927 2023 555591598 555591501 1.100000e-29 141.0
8 TraesCS6A01G188500 chr6A 91.837 98 7 1 1927 2023 268229210 268229113 5.140000e-28 135.0
9 TraesCS6A01G188500 chr6A 97.436 39 1 0 1678 1716 370119823 370119785 1.900000e-07 67.6
10 TraesCS6A01G188500 chr4A 91.061 2696 181 24 1 2694 357823887 357821250 0.000000e+00 3589.0
11 TraesCS6A01G188500 chr4A 86.002 1043 107 30 21 1042 270683403 270684427 0.000000e+00 1081.0
12 TraesCS6A01G188500 chr4A 82.264 1122 136 38 30 1133 405397270 405398346 0.000000e+00 911.0
13 TraesCS6A01G188500 chr4A 94.148 393 22 1 1472 1864 48170525 48170916 5.450000e-167 597.0
14 TraesCS6A01G188500 chr4A 91.067 403 35 1 1472 1873 48180054 48180456 7.200000e-151 544.0
15 TraesCS6A01G188500 chr4A 97.826 46 0 1 2112 2157 297573312 297573356 8.780000e-11 78.7
16 TraesCS6A01G188500 chr1A 95.529 1521 64 3 1327 2845 302958589 302957071 0.000000e+00 2429.0
17 TraesCS6A01G188500 chr1A 94.679 1560 79 3 1219 2777 302968457 302966901 0.000000e+00 2418.0
18 TraesCS6A01G188500 chr1A 93.546 1224 66 4 106 1329 302960063 302958853 0.000000e+00 1810.0
19 TraesCS6A01G188500 chr1A 91.489 235 20 0 1234 1468 271133267 271133501 1.020000e-84 324.0
20 TraesCS6A01G188500 chr1A 88.444 225 26 0 1039 1263 224723876 224724100 3.750000e-69 272.0
21 TraesCS6A01G188500 chr1A 88.000 225 27 0 1039 1263 226476926 226477150 1.750000e-67 267.0
22 TraesCS6A01G188500 chr1A 88.000 225 26 1 1039 1263 224715688 224715911 6.280000e-67 265.0
23 TraesCS6A01G188500 chr1A 90.588 170 13 3 1225 1393 538179470 538179303 3.830000e-54 222.0
24 TraesCS6A01G188500 chr1A 90.152 132 13 0 2821 2952 88371563 88371432 3.920000e-39 172.0
25 TraesCS6A01G188500 chr1A 95.098 102 5 0 1937 2038 115307562 115307461 8.480000e-36 161.0
26 TraesCS6A01G188500 chr1A 88.889 117 9 4 2081 2193 482113901 482113785 1.100000e-29 141.0
27 TraesCS6A01G188500 chr3A 88.477 1267 111 17 1 1263 522967472 522966237 0.000000e+00 1498.0
28 TraesCS6A01G188500 chr3A 89.051 822 81 9 1 819 212802131 212802946 0.000000e+00 1011.0
29 TraesCS6A01G188500 chr3A 92.643 666 47 2 599 1263 522974850 522974186 0.000000e+00 957.0
30 TraesCS6A01G188500 chr3A 90.991 111 8 2 2085 2193 311710561 311710451 6.600000e-32 148.0
31 TraesCS6A01G188500 chr3A 90.090 111 9 2 2085 2193 311718399 311718289 3.070000e-30 143.0
32 TraesCS6A01G188500 chr3A 90.909 55 5 0 1 55 325066966 325067020 1.140000e-09 75.0
33 TraesCS6A01G188500 chr3A 87.097 62 8 0 1 62 423767769 423767830 1.470000e-08 71.3
34 TraesCS6A01G188500 chr2A 93.085 940 59 4 1 936 359936911 359935974 0.000000e+00 1371.0
35 TraesCS6A01G188500 chr2A 93.933 511 28 2 2162 2672 48954991 48954484 0.000000e+00 769.0
36 TraesCS6A01G188500 chr2A 90.226 399 38 1 1442 1839 239296412 239296810 1.210000e-143 520.0
37 TraesCS6A01G188500 chr2A 88.341 223 23 3 1041 1263 244233910 244234129 6.280000e-67 265.0
38 TraesCS6A01G188500 chr2A 90.643 171 14 1 1223 1393 271236824 271236656 2.960000e-55 226.0
39 TraesCS6A01G188500 chr2A 93.182 132 9 0 2821 2952 362936564 362936433 8.360000e-46 195.0
40 TraesCS6A01G188500 chr5A 87.285 1046 100 22 21 1045 57275289 57274256 0.000000e+00 1164.0
41 TraesCS6A01G188500 chr5A 86.060 1033 116 24 31 1045 57316020 57314998 0.000000e+00 1085.0
42 TraesCS6A01G188500 chr5A 92.000 400 31 1 1474 1873 166968395 166968793 7.150000e-156 560.0
43 TraesCS6A01G188500 chr5A 91.542 402 34 0 1472 1873 166985401 166985802 3.330000e-154 555.0
44 TraesCS6A01G188500 chr5A 92.000 175 13 1 1890 2063 293903801 293903975 8.180000e-61 244.0
45 TraesCS6A01G188500 chr5A 91.429 175 14 1 1890 2063 293910819 293910993 3.810000e-59 239.0
46 TraesCS6A01G188500 chr5A 91.411 163 14 0 1234 1396 429188088 429187926 1.070000e-54 224.0
47 TraesCS6A01G188500 chr5A 91.463 164 12 2 1234 1396 429217598 429217436 1.070000e-54 224.0
48 TraesCS6A01G188500 chr5A 89.809 157 16 0 1234 1390 382442299 382442455 4.990000e-48 202.0
49 TraesCS6A01G188500 chr5A 92.035 113 7 2 2083 2193 429187249 429187137 1.100000e-34 158.0
50 TraesCS6A01G188500 chr5A 91.150 113 8 2 2083 2193 429216759 429216647 5.100000e-33 152.0
51 TraesCS6A01G188500 chr7A 85.027 935 108 27 1 921 306966567 306967483 0.000000e+00 922.0
52 TraesCS6A01G188500 chr7A 94.584 517 23 4 2162 2676 423533345 423532832 0.000000e+00 795.0
53 TraesCS6A01G188500 chr7A 89.706 204 21 0 933 1136 335286289 335286086 8.120000e-66 261.0
54 TraesCS6A01G188500 chr7A 90.050 201 19 1 933 1133 411514738 411514937 2.920000e-65 259.0
55 TraesCS6A01G188500 chr7A 97.297 111 1 2 1955 2063 202542239 202542129 1.400000e-43 187.0
56 TraesCS6A01G188500 chr7A 93.860 114 5 2 2082 2193 293823268 293823155 1.410000e-38 171.0
57 TraesCS6A01G188500 chr7A 93.694 111 5 2 1955 2063 202549425 202549315 6.550000e-37 165.0
58 TraesCS6A01G188500 chr7A 87.719 114 12 2 2082 2193 293818408 293818295 6.650000e-27 132.0
59 TraesCS6A01G188500 chr4D 81.399 715 100 31 2254 2951 165077489 165078187 1.200000e-153 553.0
60 TraesCS6A01G188500 chr4D 90.226 133 12 1 2821 2952 133865671 133865539 3.920000e-39 172.0
61 TraesCS6A01G188500 chr4D 89.744 78 6 2 1943 2019 228754499 228754575 6.740000e-17 99.0
62 TraesCS6A01G188500 chr7D 80.360 555 87 17 2344 2885 347985583 347985038 4.590000e-108 401.0
63 TraesCS6A01G188500 chr7D 79.182 538 89 17 2318 2843 347975987 347975461 4.690000e-93 351.0
64 TraesCS6A01G188500 chr5B 77.465 568 112 15 2324 2885 542972880 542972323 2.840000e-85 326.0
65 TraesCS6A01G188500 chr1B 77.677 551 99 20 2345 2885 572382480 572381944 6.150000e-82 315.0
66 TraesCS6A01G188500 chrUn 76.877 506 69 27 340 839 47096639 47097102 2.940000e-60 243.0
67 TraesCS6A01G188500 chrUn 76.877 506 69 27 340 839 413069962 413069499 2.940000e-60 243.0
68 TraesCS6A01G188500 chrUn 84.615 91 4 4 2112 2193 140689011 140688922 6.790000e-12 82.4
69 TraesCS6A01G188500 chr6D 93.443 122 7 1 2832 2952 41047811 41047690 2.340000e-41 180.0
70 TraesCS6A01G188500 chr6D 93.443 122 7 1 2832 2952 41055607 41055486 2.340000e-41 180.0
71 TraesCS6A01G188500 chr6D 93.443 122 7 1 2832 2952 182663284 182663163 2.340000e-41 180.0
72 TraesCS6A01G188500 chr4B 87.736 106 8 4 1938 2041 507047563 507047665 5.170000e-23 119.0
73 TraesCS6A01G188500 chr4B 88.764 89 9 1 1932 2019 359864595 359864683 1.120000e-19 108.0
74 TraesCS6A01G188500 chr6B 85.849 106 10 4 1938 2041 449154941 449154839 1.120000e-19 108.0
75 TraesCS6A01G188500 chr2D 91.667 72 5 1 1957 2027 572413155 572413084 6.740000e-17 99.0
76 TraesCS6A01G188500 chr2D 95.122 41 1 1 1901 1940 76805724 76805684 2.460000e-06 63.9
77 TraesCS6A01G188500 chr3D 89.474 76 6 2 1943 2017 121072903 121072977 8.720000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G188500 chr6A 230538061 230541015 2954 False 5457.0 5457 100.0000 1 2955 1 chr6A.!!$F1 2954
1 TraesCS6A01G188500 chr6A 239766099 239768911 2812 True 3995.0 3995 92.2020 1 2845 1 chr6A.!!$R1 2844
2 TraesCS6A01G188500 chr6A 356695760 356696267 507 True 747.0 747 93.1370 2167 2676 1 chr6A.!!$R5 509
3 TraesCS6A01G188500 chr6A 356782706 356783211 505 True 732.0 732 92.6500 2162 2676 1 chr6A.!!$R7 514
4 TraesCS6A01G188500 chr6A 305859939 305861032 1093 True 682.0 682 78.7590 35 1136 1 chr6A.!!$R4 1101
5 TraesCS6A01G188500 chr4A 357821250 357823887 2637 True 3589.0 3589 91.0610 1 2694 1 chr4A.!!$R1 2693
6 TraesCS6A01G188500 chr4A 270683403 270684427 1024 False 1081.0 1081 86.0020 21 1042 1 chr4A.!!$F3 1021
7 TraesCS6A01G188500 chr4A 405397270 405398346 1076 False 911.0 911 82.2640 30 1133 1 chr4A.!!$F5 1103
8 TraesCS6A01G188500 chr1A 302966901 302968457 1556 True 2418.0 2418 94.6790 1219 2777 1 chr1A.!!$R3 1558
9 TraesCS6A01G188500 chr1A 302957071 302960063 2992 True 2119.5 2429 94.5375 106 2845 2 chr1A.!!$R6 2739
10 TraesCS6A01G188500 chr3A 522966237 522967472 1235 True 1498.0 1498 88.4770 1 1263 1 chr3A.!!$R3 1262
11 TraesCS6A01G188500 chr3A 212802131 212802946 815 False 1011.0 1011 89.0510 1 819 1 chr3A.!!$F1 818
12 TraesCS6A01G188500 chr3A 522974186 522974850 664 True 957.0 957 92.6430 599 1263 1 chr3A.!!$R4 664
13 TraesCS6A01G188500 chr2A 359935974 359936911 937 True 1371.0 1371 93.0850 1 936 1 chr2A.!!$R3 935
14 TraesCS6A01G188500 chr2A 48954484 48954991 507 True 769.0 769 93.9330 2162 2672 1 chr2A.!!$R1 510
15 TraesCS6A01G188500 chr5A 57274256 57275289 1033 True 1164.0 1164 87.2850 21 1045 1 chr5A.!!$R1 1024
16 TraesCS6A01G188500 chr5A 57314998 57316020 1022 True 1085.0 1085 86.0600 31 1045 1 chr5A.!!$R2 1014
17 TraesCS6A01G188500 chr7A 306966567 306967483 916 False 922.0 922 85.0270 1 921 1 chr7A.!!$F1 920
18 TraesCS6A01G188500 chr7A 423532832 423533345 513 True 795.0 795 94.5840 2162 2676 1 chr7A.!!$R6 514
19 TraesCS6A01G188500 chr4D 165077489 165078187 698 False 553.0 553 81.3990 2254 2951 1 chr4D.!!$F1 697
20 TraesCS6A01G188500 chr7D 347985038 347985583 545 True 401.0 401 80.3600 2344 2885 1 chr7D.!!$R2 541
21 TraesCS6A01G188500 chr7D 347975461 347975987 526 True 351.0 351 79.1820 2318 2843 1 chr7D.!!$R1 525
22 TraesCS6A01G188500 chr5B 542972323 542972880 557 True 326.0 326 77.4650 2324 2885 1 chr5B.!!$R1 561
23 TraesCS6A01G188500 chr1B 572381944 572382480 536 True 315.0 315 77.6770 2345 2885 1 chr1B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 676 0.034186 GTCATGCAAGGATGGTGGGA 60.034 55.0 0.0 0.0 0.0 4.37 F
716 732 0.188342 AAGGCAAAAGAGGGGCTTCA 59.812 50.0 0.0 0.0 45.5 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1894 0.321741 TCGTCTCTGCTTCGTCCTCT 60.322 55.0 0.0 0.0 0.00 3.69 R
2645 3038 0.601558 GCATCCCCATCATGTGCATC 59.398 55.0 0.0 0.0 35.93 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
442 452 1.132834 GATGCGGATGACATGTGCAAA 59.867 47.619 1.15 0.00 39.26 3.68
660 676 0.034186 GTCATGCAAGGATGGTGGGA 60.034 55.000 0.00 0.00 0.00 4.37
687 703 1.555477 GGATACCGGGTGTCCCACAA 61.555 60.000 27.50 0.00 45.83 3.33
716 732 0.188342 AAGGCAAAAGAGGGGCTTCA 59.812 50.000 0.00 0.00 45.50 3.02
757 778 1.251251 GGAGCAAACACAGGCATCTT 58.749 50.000 0.00 0.00 0.00 2.40
810 832 1.849097 GTTCTCGGCGGTATACCTTG 58.151 55.000 19.68 9.13 0.00 3.61
939 1011 0.805614 CTATCGATCCTCGGCGATGT 59.194 55.000 11.27 0.00 45.71 3.06
1062 1136 0.455633 GTCGCACACGGTTCGTAGAT 60.456 55.000 0.00 0.00 38.32 1.98
1098 1172 1.379443 AGGTACTCGACGCATCCCA 60.379 57.895 0.00 0.00 0.00 4.37
1099 1173 0.755698 AGGTACTCGACGCATCCCAT 60.756 55.000 0.00 0.00 0.00 4.00
1109 1183 3.728845 GACGCATCCCATATGTGTAGTT 58.271 45.455 1.24 0.00 42.12 2.24
1190 1264 4.690280 TCGTTCATGTAGTAGTCGTACACA 59.310 41.667 0.00 0.00 33.26 3.72
1204 1278 1.537814 TACACATGTCTTCGGCGGGT 61.538 55.000 7.21 0.00 0.00 5.28
1211 1285 2.204461 TCTTCGGCGGGTGTCTTCA 61.204 57.895 7.21 0.00 0.00 3.02
1213 1287 2.436087 CTTCGGCGGGTGTCTTCAGT 62.436 60.000 7.21 0.00 0.00 3.41
1250 1324 1.069775 ACGGGTACATTGGGGTCTTT 58.930 50.000 0.00 0.00 0.00 2.52
1291 1365 2.345991 GGTGTGGACGGCTAGCAA 59.654 61.111 18.24 0.00 0.00 3.91
1292 1366 1.302192 GGTGTGGACGGCTAGCAAA 60.302 57.895 18.24 0.00 0.00 3.68
1330 1670 1.262151 GGTGTTGCGTGTACGTTCAAT 59.738 47.619 6.27 0.00 42.22 2.57
1463 1803 2.915659 AACGAGGAGGTGCGGTCA 60.916 61.111 0.00 0.00 0.00 4.02
1554 1894 1.893062 CAGAGGCATGACGTGAGGA 59.107 57.895 0.00 0.00 0.00 3.71
1723 2063 0.248825 CTGGACCTCGCGATGAAGAG 60.249 60.000 18.54 4.41 0.00 2.85
1980 2320 0.849417 GAAGGGAGAGGCCATGGATT 59.151 55.000 18.40 1.08 38.95 3.01
2092 2434 0.037605 CGAACGGGAGTGCTAGGTTT 60.038 55.000 0.00 0.00 46.69 3.27
2160 2534 4.617595 AGGGGAGGTTGGGCTGGT 62.618 66.667 0.00 0.00 0.00 4.00
2171 2545 2.269241 GGCTGGTGCAGGAGGTAC 59.731 66.667 0.00 0.00 41.91 3.34
2173 2547 2.646175 GCTGGTGCAGGAGGTACGA 61.646 63.158 0.00 0.00 39.41 3.43
2260 2634 1.517242 ACTGCTTCTGCCTCTTTTCG 58.483 50.000 0.00 0.00 38.71 3.46
2645 3038 4.721142 TGATGCATGAATACAAACACACG 58.279 39.130 2.46 0.00 0.00 4.49
2683 3078 5.452216 GGATGCAATGCAAATGACAATAGGA 60.452 40.000 13.45 0.00 43.62 2.94
2867 3263 3.099905 CTCCACCACTACAAGAGGATCA 58.900 50.000 0.00 0.00 37.82 2.92
2891 3289 1.626686 CCGAGATCTAGGATGGCACT 58.373 55.000 16.40 0.00 0.00 4.40
2892 3290 2.555448 CCCGAGATCTAGGATGGCACTA 60.555 54.545 22.35 0.00 0.00 2.74
2902 3300 6.615617 TCTAGGATGGCACTAGATAGAAAGT 58.384 40.000 9.98 0.00 41.34 2.66
2903 3301 5.543507 AGGATGGCACTAGATAGAAAGTG 57.456 43.478 0.00 0.00 44.79 3.16
2906 3304 6.156949 AGGATGGCACTAGATAGAAAGTGAAA 59.843 38.462 6.65 0.00 44.79 2.69
2907 3305 6.481644 GGATGGCACTAGATAGAAAGTGAAAG 59.518 42.308 6.65 0.00 44.79 2.62
2908 3306 6.605471 TGGCACTAGATAGAAAGTGAAAGA 57.395 37.500 6.65 0.00 44.79 2.52
2922 3324 8.221251 AGAAAGTGAAAGAGGAAGAGGTAAAAT 58.779 33.333 0.00 0.00 0.00 1.82
2923 3325 9.503399 GAAAGTGAAAGAGGAAGAGGTAAAATA 57.497 33.333 0.00 0.00 0.00 1.40
2933 3335 8.112016 AGGAAGAGGTAAAATAAAGTTGCTTC 57.888 34.615 0.00 0.00 0.00 3.86
2936 3338 9.967346 GAAGAGGTAAAATAAAGTTGCTTCTTT 57.033 29.630 10.43 10.43 37.22 2.52
2940 3342 8.691797 AGGTAAAATAAAGTTGCTTCTTTGACA 58.308 29.630 13.88 0.00 38.02 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.511653 GCTTCTGTTTCGTTCCGGAC 59.488 55.000 1.83 0.00 0.00 4.79
21 22 3.580731 GTTGCTTCTCTCGTTAGCTTCT 58.419 45.455 0.00 0.00 35.93 2.85
596 610 1.372683 CCGGTATCCCCATGAGCTG 59.627 63.158 0.00 0.00 0.00 4.24
687 703 1.454847 TTTTGCCTTGCCACCGTCT 60.455 52.632 0.00 0.00 0.00 4.18
716 732 1.852067 GCCGGAGTTGTTCGTTGCAT 61.852 55.000 5.05 0.00 0.00 3.96
749 765 4.454678 CATGTGTGGTGTATAAGATGCCT 58.545 43.478 0.00 0.00 0.00 4.75
757 778 3.867857 ACGAATGCATGTGTGGTGTATA 58.132 40.909 0.00 0.00 0.00 1.47
810 832 0.729140 CGTCCCGTTTGCATGCTTTC 60.729 55.000 20.33 7.79 0.00 2.62
939 1011 3.833650 TCGGATTCACCAAGTACCACTAA 59.166 43.478 0.00 0.00 38.90 2.24
1109 1183 6.645003 GTCAAGTTCATCTATGTGTGTGTACA 59.355 38.462 0.00 0.00 34.63 2.90
1116 1190 5.812642 GGATTCGTCAAGTTCATCTATGTGT 59.187 40.000 0.00 0.00 0.00 3.72
1190 1264 1.827399 AAGACACCCGCCGAAGACAT 61.827 55.000 0.00 0.00 0.00 3.06
1204 1278 4.454847 CGTCAAGTACCTCTACTGAAGACA 59.545 45.833 0.00 0.00 33.67 3.41
1211 1285 3.080319 GTGGACGTCAAGTACCTCTACT 58.920 50.000 18.91 0.00 34.38 2.57
1213 1287 2.079158 CGTGGACGTCAAGTACCTCTA 58.921 52.381 18.91 0.00 30.72 2.43
1250 1324 1.675310 CATCAAGCCGGCAAGTCCA 60.675 57.895 31.54 6.06 34.01 4.02
1291 1365 1.269936 CCGACGTCCACAAGTACCTTT 60.270 52.381 10.58 0.00 0.00 3.11
1292 1366 0.316204 CCGACGTCCACAAGTACCTT 59.684 55.000 10.58 0.00 0.00 3.50
1300 1374 2.586635 GCAACACCGACGTCCACA 60.587 61.111 10.58 0.00 0.00 4.17
1330 1670 2.882137 GTTTTCGTCAAGTCCCATTCCA 59.118 45.455 0.00 0.00 0.00 3.53
1403 1743 1.202758 TCTTCCTTGCCTTTCTTCGCA 60.203 47.619 0.00 0.00 0.00 5.10
1407 1747 2.881734 CCCTTCTTCCTTGCCTTTCTT 58.118 47.619 0.00 0.00 0.00 2.52
1463 1803 2.499685 GCCTCGTTCGGCTACCAT 59.500 61.111 6.01 0.00 46.63 3.55
1511 1851 3.136345 TACGTGTTCACCGCACCGT 62.136 57.895 0.00 0.00 33.61 4.83
1554 1894 0.321741 TCGTCTCTGCTTCGTCCTCT 60.322 55.000 0.00 0.00 0.00 3.69
1697 2037 2.659610 GCGAGGTCCAGCAAGTCT 59.340 61.111 4.67 0.00 0.00 3.24
1869 2209 1.984570 CTGGAGCTCCTTCGGACCA 60.985 63.158 32.28 10.28 36.82 4.02
2092 2434 0.911769 CACTACCAGAAGCCCATCCA 59.088 55.000 0.00 0.00 0.00 3.41
2132 2506 4.201122 CTCCCCTGGGCCATCTGC 62.201 72.222 6.72 0.00 40.16 4.26
2157 2531 1.541310 CCTTCGTACCTCCTGCACCA 61.541 60.000 0.00 0.00 0.00 4.17
2160 2534 2.656069 GGCCTTCGTACCTCCTGCA 61.656 63.158 0.00 0.00 0.00 4.41
2199 2573 4.704833 CCCAGTCCAGCACCACCG 62.705 72.222 0.00 0.00 0.00 4.94
2434 2810 8.731605 GGAAATGTTTTGGTTAGGTTTTGAAAA 58.268 29.630 0.00 0.00 0.00 2.29
2438 2814 7.617041 TTGGAAATGTTTTGGTTAGGTTTTG 57.383 32.000 0.00 0.00 0.00 2.44
2533 2910 2.162681 CGAGTGCCATTTTCCCTTCTT 58.837 47.619 0.00 0.00 0.00 2.52
2596 2983 3.346315 CATGCTCCATGTGTGGTTCTTA 58.654 45.455 0.00 0.00 46.16 2.10
2645 3038 0.601558 GCATCCCCATCATGTGCATC 59.398 55.000 0.00 0.00 35.93 3.91
2683 3078 9.472361 GCTTATCTTGATCATATTGCATTTGTT 57.528 29.630 0.00 0.00 0.00 2.83
2891 3289 7.896496 ACCTCTTCCTCTTTCACTTTCTATCTA 59.104 37.037 0.00 0.00 0.00 1.98
2892 3290 6.728632 ACCTCTTCCTCTTTCACTTTCTATCT 59.271 38.462 0.00 0.00 0.00 1.98
2901 3299 9.286170 ACTTTATTTTACCTCTTCCTCTTTCAC 57.714 33.333 0.00 0.00 0.00 3.18
2902 3300 9.862149 AACTTTATTTTACCTCTTCCTCTTTCA 57.138 29.630 0.00 0.00 0.00 2.69
2906 3304 7.462590 AGCAACTTTATTTTACCTCTTCCTCT 58.537 34.615 0.00 0.00 0.00 3.69
2907 3305 7.689446 AGCAACTTTATTTTACCTCTTCCTC 57.311 36.000 0.00 0.00 0.00 3.71
2908 3306 7.945109 AGAAGCAACTTTATTTTACCTCTTCCT 59.055 33.333 0.00 0.00 0.00 3.36
2922 3324 7.754924 CACTCTTTTGTCAAAGAAGCAACTTTA 59.245 33.333 7.60 0.00 46.35 1.85
2923 3325 6.587608 CACTCTTTTGTCAAAGAAGCAACTTT 59.412 34.615 0.00 2.98 46.35 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.