Multiple sequence alignment - TraesCS6A01G187600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G187600 chr6A 100.000 2585 0 0 1 2585 223978379 223980963 0.000000e+00 4774.0
1 TraesCS6A01G187600 chr6A 89.605 481 30 7 1 461 81099162 81098682 6.160000e-166 593.0
2 TraesCS6A01G187600 chr6A 91.304 46 2 2 2517 2561 442088165 442088121 7.720000e-06 62.1
3 TraesCS6A01G187600 chr6B 90.644 2095 80 39 470 2521 298488400 298486379 0.000000e+00 2676.0
4 TraesCS6A01G187600 chr6D 93.276 1636 47 20 462 2061 187206075 187204467 0.000000e+00 2353.0
5 TraesCS6A01G187600 chr6D 85.956 413 26 6 2175 2584 187204478 187204095 1.850000e-111 412.0
6 TraesCS6A01G187600 chr7D 89.648 483 29 7 1 463 411030043 411029562 1.710000e-166 595.0
7 TraesCS6A01G187600 chr7D 93.451 397 26 0 1 397 576947820 576947424 7.970000e-165 590.0
8 TraesCS6A01G187600 chr4D 93.687 396 25 0 2 397 296664750 296664355 6.160000e-166 593.0
9 TraesCS6A01G187600 chr1A 89.441 483 31 10 1 463 25550410 25549928 2.220000e-165 592.0
10 TraesCS6A01G187600 chr5B 93.401 394 26 0 1 394 143727697 143728090 3.710000e-163 584.0
11 TraesCS6A01G187600 chr5A 93.199 397 27 0 1 397 547351286 547350890 3.710000e-163 584.0
12 TraesCS6A01G187600 chr4A 93.401 394 26 0 1 394 696046939 696047332 3.710000e-163 584.0
13 TraesCS6A01G187600 chrUn 91.971 411 29 4 1 408 82176381 82176790 8.020000e-160 573.0
14 TraesCS6A01G187600 chrUn 85.246 61 3 4 2506 2561 40528157 40528216 9.990000e-05 58.4
15 TraesCS6A01G187600 chr1B 87.302 63 4 3 2527 2585 77276719 77276781 4.620000e-08 69.4
16 TraesCS6A01G187600 chr3D 88.235 51 2 2 2515 2561 388518954 388518904 9.990000e-05 58.4
17 TraesCS6A01G187600 chr3B 88.235 51 2 2 2515 2561 505521004 505520954 9.990000e-05 58.4
18 TraesCS6A01G187600 chr3B 86.792 53 4 3 2527 2577 20098169 20098220 3.590000e-04 56.5
19 TraesCS6A01G187600 chr3A 88.235 51 2 3 2515 2561 509567127 509567077 9.990000e-05 58.4
20 TraesCS6A01G187600 chr3A 85.185 54 8 0 2508 2561 644917624 644917677 3.590000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G187600 chr6A 223978379 223980963 2584 False 4774.0 4774 100.000 1 2585 1 chr6A.!!$F1 2584
1 TraesCS6A01G187600 chr6B 298486379 298488400 2021 True 2676.0 2676 90.644 470 2521 1 chr6B.!!$R1 2051
2 TraesCS6A01G187600 chr6D 187204095 187206075 1980 True 1382.5 2353 89.616 462 2584 2 chr6D.!!$R1 2122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.036388 ATGACGGCGAATCCAGTGTT 60.036 50.0 16.62 0.0 34.01 3.32 F
221 222 0.106769 TGGCTGCTTGTGAACTGGAA 60.107 50.0 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1298 0.250513 AGAAAGGCTTGTAGGAGGCG 59.749 55.0 0.00 0.0 45.99 5.52 R
1643 1678 0.668706 ACTAGCTCAGCTGCACAACG 60.669 55.0 10.31 0.0 40.10 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.406764 GAGGCAGAGTATAAGGCATTGG 58.593 50.000 0.00 0.00 0.00 3.16
22 23 1.882623 GGCAGAGTATAAGGCATTGGC 59.117 52.381 1.17 1.17 40.13 4.52
39 40 4.183686 CCAATGGCGCGGCTGAAG 62.184 66.667 33.23 19.16 0.00 3.02
40 41 4.842091 CAATGGCGCGGCTGAAGC 62.842 66.667 33.23 0.81 41.14 3.86
53 54 3.978718 GCTGAAGCCATTTGGATAGAC 57.021 47.619 0.00 0.00 37.39 2.59
54 55 3.549794 GCTGAAGCCATTTGGATAGACT 58.450 45.455 0.00 0.00 37.39 3.24
55 56 3.563390 GCTGAAGCCATTTGGATAGACTC 59.437 47.826 0.00 0.00 37.39 3.36
56 57 4.774124 CTGAAGCCATTTGGATAGACTCA 58.226 43.478 0.00 0.00 37.39 3.41
57 58 4.774124 TGAAGCCATTTGGATAGACTCAG 58.226 43.478 0.00 0.00 37.39 3.35
58 59 4.225942 TGAAGCCATTTGGATAGACTCAGT 59.774 41.667 0.00 0.00 37.39 3.41
59 60 4.851639 AGCCATTTGGATAGACTCAGTT 57.148 40.909 0.00 0.00 37.39 3.16
60 61 4.775236 AGCCATTTGGATAGACTCAGTTC 58.225 43.478 0.00 0.00 37.39 3.01
61 62 4.472833 AGCCATTTGGATAGACTCAGTTCT 59.527 41.667 0.00 0.00 37.39 3.01
62 63 4.813697 GCCATTTGGATAGACTCAGTTCTC 59.186 45.833 0.00 0.00 37.39 2.87
63 64 5.627735 GCCATTTGGATAGACTCAGTTCTCA 60.628 44.000 0.00 0.00 37.39 3.27
64 65 5.814705 CCATTTGGATAGACTCAGTTCTCAC 59.185 44.000 0.00 0.00 37.39 3.51
65 66 6.401394 CATTTGGATAGACTCAGTTCTCACA 58.599 40.000 0.00 0.00 0.00 3.58
66 67 5.651387 TTGGATAGACTCAGTTCTCACAG 57.349 43.478 0.00 0.00 0.00 3.66
67 68 4.019858 TGGATAGACTCAGTTCTCACAGG 58.980 47.826 0.00 0.00 0.00 4.00
68 69 4.263949 TGGATAGACTCAGTTCTCACAGGA 60.264 45.833 0.00 0.00 0.00 3.86
69 70 4.097286 GGATAGACTCAGTTCTCACAGGAC 59.903 50.000 0.00 0.00 0.00 3.85
70 71 3.237268 AGACTCAGTTCTCACAGGACT 57.763 47.619 0.00 0.00 0.00 3.85
71 72 3.571590 AGACTCAGTTCTCACAGGACTT 58.428 45.455 0.00 0.00 0.00 3.01
72 73 3.320541 AGACTCAGTTCTCACAGGACTTG 59.679 47.826 0.00 0.00 0.00 3.16
73 74 2.366916 ACTCAGTTCTCACAGGACTTGG 59.633 50.000 0.00 0.00 0.00 3.61
74 75 2.630098 CTCAGTTCTCACAGGACTTGGA 59.370 50.000 0.00 0.00 0.00 3.53
75 76 2.630098 TCAGTTCTCACAGGACTTGGAG 59.370 50.000 0.00 0.00 0.00 3.86
76 77 2.366916 CAGTTCTCACAGGACTTGGAGT 59.633 50.000 0.00 0.00 0.00 3.85
77 78 2.630580 AGTTCTCACAGGACTTGGAGTC 59.369 50.000 0.00 0.00 44.32 3.36
84 85 2.047179 GACTTGGAGTCCCACGGC 60.047 66.667 6.74 0.00 43.41 5.68
85 86 2.847234 ACTTGGAGTCCCACGGCA 60.847 61.111 6.74 0.00 43.41 5.69
86 87 2.391724 GACTTGGAGTCCCACGGCAA 62.392 60.000 6.74 0.00 43.41 4.52
87 88 1.966451 CTTGGAGTCCCACGGCAAC 60.966 63.158 6.74 0.00 43.41 4.17
100 101 3.414486 GGCAACGCACCCCTATATT 57.586 52.632 0.00 0.00 0.00 1.28
101 102 1.235724 GGCAACGCACCCCTATATTC 58.764 55.000 0.00 0.00 0.00 1.75
102 103 1.202770 GGCAACGCACCCCTATATTCT 60.203 52.381 0.00 0.00 0.00 2.40
103 104 1.873591 GCAACGCACCCCTATATTCTG 59.126 52.381 0.00 0.00 0.00 3.02
104 105 2.494059 CAACGCACCCCTATATTCTGG 58.506 52.381 0.00 0.00 0.00 3.86
105 106 1.802553 ACGCACCCCTATATTCTGGT 58.197 50.000 0.00 0.00 0.00 4.00
110 111 4.982241 CACCCCTATATTCTGGTGTGAT 57.018 45.455 8.37 0.00 42.61 3.06
112 113 6.433847 CACCCCTATATTCTGGTGTGATAA 57.566 41.667 8.37 0.00 42.61 1.75
113 114 6.231211 CACCCCTATATTCTGGTGTGATAAC 58.769 44.000 8.37 0.00 42.61 1.89
114 115 6.043243 CACCCCTATATTCTGGTGTGATAACT 59.957 42.308 8.37 0.00 42.61 2.24
115 116 6.619852 ACCCCTATATTCTGGTGTGATAACTT 59.380 38.462 0.00 0.00 0.00 2.66
116 117 7.792736 ACCCCTATATTCTGGTGTGATAACTTA 59.207 37.037 0.00 0.00 0.00 2.24
117 118 8.314751 CCCCTATATTCTGGTGTGATAACTTAG 58.685 40.741 0.00 0.00 0.00 2.18
118 119 8.314751 CCCTATATTCTGGTGTGATAACTTAGG 58.685 40.741 0.00 0.00 0.00 2.69
119 120 8.314751 CCTATATTCTGGTGTGATAACTTAGGG 58.685 40.741 0.00 0.00 0.00 3.53
120 121 7.931015 ATATTCTGGTGTGATAACTTAGGGA 57.069 36.000 0.00 0.00 0.00 4.20
121 122 5.416271 TTCTGGTGTGATAACTTAGGGAC 57.584 43.478 0.00 0.00 0.00 4.46
122 123 4.422057 TCTGGTGTGATAACTTAGGGACA 58.578 43.478 0.00 0.00 0.00 4.02
123 124 4.841813 TCTGGTGTGATAACTTAGGGACAA 59.158 41.667 0.00 0.00 0.00 3.18
124 125 4.901868 TGGTGTGATAACTTAGGGACAAC 58.098 43.478 0.00 0.00 0.00 3.32
125 126 4.595781 TGGTGTGATAACTTAGGGACAACT 59.404 41.667 0.00 0.00 0.00 3.16
126 127 5.072600 TGGTGTGATAACTTAGGGACAACTT 59.927 40.000 0.00 0.00 0.00 2.66
127 128 6.270463 TGGTGTGATAACTTAGGGACAACTTA 59.730 38.462 0.00 0.00 0.00 2.24
128 129 6.592994 GGTGTGATAACTTAGGGACAACTTAC 59.407 42.308 0.00 0.00 0.00 2.34
129 130 7.156673 GTGTGATAACTTAGGGACAACTTACA 58.843 38.462 0.00 0.00 0.00 2.41
130 131 7.822822 GTGTGATAACTTAGGGACAACTTACAT 59.177 37.037 0.00 0.00 0.00 2.29
131 132 7.822334 TGTGATAACTTAGGGACAACTTACATG 59.178 37.037 0.00 0.00 0.00 3.21
132 133 8.038944 GTGATAACTTAGGGACAACTTACATGA 58.961 37.037 0.00 0.00 0.00 3.07
133 134 8.038944 TGATAACTTAGGGACAACTTACATGAC 58.961 37.037 0.00 0.00 0.00 3.06
134 135 4.817517 ACTTAGGGACAACTTACATGACG 58.182 43.478 0.00 0.00 0.00 4.35
135 136 2.762535 AGGGACAACTTACATGACGG 57.237 50.000 0.00 0.00 0.00 4.79
136 137 1.084289 GGGACAACTTACATGACGGC 58.916 55.000 0.00 0.00 0.00 5.68
137 138 0.719465 GGACAACTTACATGACGGCG 59.281 55.000 4.80 4.80 0.00 6.46
138 139 1.670674 GGACAACTTACATGACGGCGA 60.671 52.381 16.62 0.00 0.00 5.54
139 140 2.063266 GACAACTTACATGACGGCGAA 58.937 47.619 16.62 0.57 0.00 4.70
140 141 2.671396 GACAACTTACATGACGGCGAAT 59.329 45.455 16.62 3.56 0.00 3.34
141 142 2.671396 ACAACTTACATGACGGCGAATC 59.329 45.455 16.62 1.19 0.00 2.52
142 143 1.935933 ACTTACATGACGGCGAATCC 58.064 50.000 16.62 0.00 0.00 3.01
143 144 1.206132 ACTTACATGACGGCGAATCCA 59.794 47.619 16.62 6.19 34.01 3.41
144 145 1.860950 CTTACATGACGGCGAATCCAG 59.139 52.381 16.62 0.14 34.01 3.86
145 146 0.821517 TACATGACGGCGAATCCAGT 59.178 50.000 16.62 6.80 34.01 4.00
146 147 0.740868 ACATGACGGCGAATCCAGTG 60.741 55.000 16.62 4.82 34.01 3.66
147 148 0.740868 CATGACGGCGAATCCAGTGT 60.741 55.000 16.62 0.00 34.01 3.55
148 149 0.036388 ATGACGGCGAATCCAGTGTT 60.036 50.000 16.62 0.00 34.01 3.32
149 150 0.250124 TGACGGCGAATCCAGTGTTT 60.250 50.000 16.62 0.00 34.01 2.83
150 151 0.872388 GACGGCGAATCCAGTGTTTT 59.128 50.000 16.62 0.00 34.01 2.43
151 152 2.070783 GACGGCGAATCCAGTGTTTTA 58.929 47.619 16.62 0.00 34.01 1.52
152 153 2.676342 GACGGCGAATCCAGTGTTTTAT 59.324 45.455 16.62 0.00 34.01 1.40
153 154 2.418628 ACGGCGAATCCAGTGTTTTATG 59.581 45.455 16.62 0.00 34.01 1.90
154 155 2.791158 CGGCGAATCCAGTGTTTTATGC 60.791 50.000 0.00 0.00 34.01 3.14
155 156 2.423538 GGCGAATCCAGTGTTTTATGCT 59.576 45.455 0.00 0.00 34.01 3.79
156 157 3.487544 GGCGAATCCAGTGTTTTATGCTC 60.488 47.826 0.00 0.00 34.01 4.26
157 158 3.785505 GCGAATCCAGTGTTTTATGCTCG 60.786 47.826 0.00 0.00 0.00 5.03
158 159 3.242413 CGAATCCAGTGTTTTATGCTCGG 60.242 47.826 0.00 0.00 0.00 4.63
159 160 3.627395 ATCCAGTGTTTTATGCTCGGA 57.373 42.857 0.00 0.00 0.00 4.55
160 161 2.695359 TCCAGTGTTTTATGCTCGGAC 58.305 47.619 0.00 0.00 0.00 4.79
161 162 2.301870 TCCAGTGTTTTATGCTCGGACT 59.698 45.455 0.00 0.00 0.00 3.85
162 163 3.512329 TCCAGTGTTTTATGCTCGGACTA 59.488 43.478 0.00 0.00 0.00 2.59
163 164 4.020928 TCCAGTGTTTTATGCTCGGACTAA 60.021 41.667 0.00 0.00 0.00 2.24
164 165 4.693566 CCAGTGTTTTATGCTCGGACTAAA 59.306 41.667 0.00 0.00 0.00 1.85
165 166 5.390567 CCAGTGTTTTATGCTCGGACTAAAC 60.391 44.000 0.00 0.00 0.00 2.01
166 167 5.178623 CAGTGTTTTATGCTCGGACTAAACA 59.821 40.000 0.00 0.00 34.28 2.83
167 168 5.379827 GTGTTTTATGCTCGGACTAAACAC 58.620 41.667 11.38 11.38 44.22 3.32
168 169 5.057819 TGTTTTATGCTCGGACTAAACACA 58.942 37.500 0.00 0.00 32.43 3.72
169 170 5.703592 TGTTTTATGCTCGGACTAAACACAT 59.296 36.000 0.00 0.00 32.43 3.21
170 171 6.205853 TGTTTTATGCTCGGACTAAACACATT 59.794 34.615 0.00 0.00 32.43 2.71
171 172 5.794687 TTATGCTCGGACTAAACACATTG 57.205 39.130 0.00 0.00 0.00 2.82
172 173 3.394674 TGCTCGGACTAAACACATTGA 57.605 42.857 0.00 0.00 0.00 2.57
173 174 3.325870 TGCTCGGACTAAACACATTGAG 58.674 45.455 0.00 0.00 0.00 3.02
174 175 3.006430 TGCTCGGACTAAACACATTGAGA 59.994 43.478 0.00 0.00 0.00 3.27
175 176 4.184629 GCTCGGACTAAACACATTGAGAT 58.815 43.478 0.00 0.00 0.00 2.75
176 177 4.631813 GCTCGGACTAAACACATTGAGATT 59.368 41.667 0.00 0.00 0.00 2.40
177 178 5.446473 GCTCGGACTAAACACATTGAGATTG 60.446 44.000 0.00 0.00 0.00 2.67
178 179 5.789521 TCGGACTAAACACATTGAGATTGA 58.210 37.500 0.00 0.00 0.00 2.57
179 180 6.406370 TCGGACTAAACACATTGAGATTGAT 58.594 36.000 0.00 0.00 0.00 2.57
180 181 6.878923 TCGGACTAAACACATTGAGATTGATT 59.121 34.615 0.00 0.00 0.00 2.57
181 182 7.390440 TCGGACTAAACACATTGAGATTGATTT 59.610 33.333 0.00 0.00 0.00 2.17
182 183 7.693951 CGGACTAAACACATTGAGATTGATTTC 59.306 37.037 0.00 0.00 0.00 2.17
183 184 8.734386 GGACTAAACACATTGAGATTGATTTCT 58.266 33.333 0.00 0.00 0.00 2.52
196 197 9.948964 TGAGATTGATTTCTATTTTGTGAGAGA 57.051 29.630 0.00 0.00 0.00 3.10
202 203 9.730705 TGATTTCTATTTTGTGAGAGAATGAGT 57.269 29.630 0.00 0.00 0.00 3.41
203 204 9.985318 GATTTCTATTTTGTGAGAGAATGAGTG 57.015 33.333 0.00 0.00 0.00 3.51
204 205 7.912056 TTCTATTTTGTGAGAGAATGAGTGG 57.088 36.000 0.00 0.00 0.00 4.00
205 206 5.877012 TCTATTTTGTGAGAGAATGAGTGGC 59.123 40.000 0.00 0.00 0.00 5.01
206 207 3.777106 TTTGTGAGAGAATGAGTGGCT 57.223 42.857 0.00 0.00 0.00 4.75
207 208 2.756840 TGTGAGAGAATGAGTGGCTG 57.243 50.000 0.00 0.00 0.00 4.85
208 209 1.338484 TGTGAGAGAATGAGTGGCTGC 60.338 52.381 0.00 0.00 0.00 5.25
209 210 1.066286 GTGAGAGAATGAGTGGCTGCT 60.066 52.381 0.00 0.00 0.00 4.24
210 211 1.627329 TGAGAGAATGAGTGGCTGCTT 59.373 47.619 0.00 0.00 0.00 3.91
211 212 2.008329 GAGAGAATGAGTGGCTGCTTG 58.992 52.381 0.00 0.00 0.00 4.01
212 213 1.350351 AGAGAATGAGTGGCTGCTTGT 59.650 47.619 0.00 0.00 0.00 3.16
213 214 1.467734 GAGAATGAGTGGCTGCTTGTG 59.532 52.381 0.00 0.00 0.00 3.33
214 215 1.072806 AGAATGAGTGGCTGCTTGTGA 59.927 47.619 0.00 0.00 0.00 3.58
215 216 1.881973 GAATGAGTGGCTGCTTGTGAA 59.118 47.619 0.00 0.00 0.00 3.18
216 217 1.242076 ATGAGTGGCTGCTTGTGAAC 58.758 50.000 0.00 0.00 0.00 3.18
217 218 0.181114 TGAGTGGCTGCTTGTGAACT 59.819 50.000 0.00 0.00 0.00 3.01
218 219 0.590195 GAGTGGCTGCTTGTGAACTG 59.410 55.000 0.00 0.00 0.00 3.16
219 220 0.820891 AGTGGCTGCTTGTGAACTGG 60.821 55.000 0.00 0.00 0.00 4.00
220 221 0.819259 GTGGCTGCTTGTGAACTGGA 60.819 55.000 0.00 0.00 0.00 3.86
221 222 0.106769 TGGCTGCTTGTGAACTGGAA 60.107 50.000 0.00 0.00 0.00 3.53
222 223 1.251251 GGCTGCTTGTGAACTGGAAT 58.749 50.000 0.00 0.00 0.00 3.01
223 224 1.615392 GGCTGCTTGTGAACTGGAATT 59.385 47.619 0.00 0.00 0.00 2.17
224 225 2.352127 GGCTGCTTGTGAACTGGAATTC 60.352 50.000 0.00 0.00 0.00 2.17
225 226 2.666619 GCTGCTTGTGAACTGGAATTCG 60.667 50.000 0.00 0.00 0.00 3.34
226 227 1.879380 TGCTTGTGAACTGGAATTCGG 59.121 47.619 0.00 0.00 0.00 4.30
227 228 1.200020 GCTTGTGAACTGGAATTCGGG 59.800 52.381 0.00 0.00 0.00 5.14
228 229 2.504367 CTTGTGAACTGGAATTCGGGT 58.496 47.619 0.00 0.00 0.00 5.28
229 230 2.649531 TGTGAACTGGAATTCGGGTT 57.350 45.000 12.40 12.40 0.00 4.11
230 231 2.938838 TGTGAACTGGAATTCGGGTTT 58.061 42.857 13.35 0.00 0.00 3.27
231 232 4.088056 TGTGAACTGGAATTCGGGTTTA 57.912 40.909 13.35 8.55 0.00 2.01
232 233 4.658063 TGTGAACTGGAATTCGGGTTTAT 58.342 39.130 13.35 0.00 0.00 1.40
233 234 5.074115 TGTGAACTGGAATTCGGGTTTATT 58.926 37.500 13.35 0.00 0.00 1.40
234 235 5.536916 TGTGAACTGGAATTCGGGTTTATTT 59.463 36.000 13.35 0.00 0.00 1.40
235 236 6.090783 GTGAACTGGAATTCGGGTTTATTTC 58.909 40.000 13.35 4.54 0.00 2.17
236 237 6.007703 TGAACTGGAATTCGGGTTTATTTCT 58.992 36.000 13.35 0.00 0.00 2.52
237 238 7.120138 GTGAACTGGAATTCGGGTTTATTTCTA 59.880 37.037 13.35 0.00 0.00 2.10
238 239 6.997239 ACTGGAATTCGGGTTTATTTCTAC 57.003 37.500 0.00 0.00 0.00 2.59
239 240 6.478129 ACTGGAATTCGGGTTTATTTCTACA 58.522 36.000 0.00 0.00 0.00 2.74
240 241 6.598064 ACTGGAATTCGGGTTTATTTCTACAG 59.402 38.462 0.00 0.00 0.00 2.74
241 242 6.713276 TGGAATTCGGGTTTATTTCTACAGA 58.287 36.000 0.00 0.00 0.00 3.41
242 243 7.343357 TGGAATTCGGGTTTATTTCTACAGAT 58.657 34.615 0.00 0.00 0.00 2.90
243 244 7.282224 TGGAATTCGGGTTTATTTCTACAGATG 59.718 37.037 0.00 0.00 0.00 2.90
244 245 7.497909 GGAATTCGGGTTTATTTCTACAGATGA 59.502 37.037 0.00 0.00 0.00 2.92
245 246 8.980481 AATTCGGGTTTATTTCTACAGATGAT 57.020 30.769 0.00 0.00 0.00 2.45
246 247 8.608844 ATTCGGGTTTATTTCTACAGATGATC 57.391 34.615 0.00 0.00 0.00 2.92
247 248 7.119709 TCGGGTTTATTTCTACAGATGATCA 57.880 36.000 0.00 0.00 0.00 2.92
248 249 7.561251 TCGGGTTTATTTCTACAGATGATCAA 58.439 34.615 0.00 0.00 0.00 2.57
249 250 8.210946 TCGGGTTTATTTCTACAGATGATCAAT 58.789 33.333 0.00 0.00 0.00 2.57
250 251 8.840321 CGGGTTTATTTCTACAGATGATCAATT 58.160 33.333 0.00 0.00 0.00 2.32
255 256 7.664082 ATTTCTACAGATGATCAATTAGCGG 57.336 36.000 0.00 0.00 0.00 5.52
256 257 6.405278 TTCTACAGATGATCAATTAGCGGA 57.595 37.500 0.00 0.00 0.00 5.54
257 258 6.596309 TCTACAGATGATCAATTAGCGGAT 57.404 37.500 0.00 0.00 0.00 4.18
258 259 6.393171 TCTACAGATGATCAATTAGCGGATG 58.607 40.000 0.00 0.00 0.00 3.51
259 260 4.965814 ACAGATGATCAATTAGCGGATGT 58.034 39.130 0.00 0.00 0.00 3.06
260 261 6.101650 ACAGATGATCAATTAGCGGATGTA 57.898 37.500 0.00 0.00 0.00 2.29
261 262 6.705302 ACAGATGATCAATTAGCGGATGTAT 58.295 36.000 0.00 0.00 0.00 2.29
262 263 7.164122 ACAGATGATCAATTAGCGGATGTATT 58.836 34.615 0.00 0.00 0.00 1.89
263 264 7.663081 ACAGATGATCAATTAGCGGATGTATTT 59.337 33.333 0.00 0.00 0.00 1.40
264 265 9.154847 CAGATGATCAATTAGCGGATGTATTTA 57.845 33.333 0.00 0.00 0.00 1.40
265 266 9.155975 AGATGATCAATTAGCGGATGTATTTAC 57.844 33.333 0.00 0.00 0.00 2.01
266 267 9.155975 GATGATCAATTAGCGGATGTATTTACT 57.844 33.333 0.00 0.00 0.00 2.24
268 269 9.990360 TGATCAATTAGCGGATGTATTTACTAA 57.010 29.630 0.00 0.00 0.00 2.24
271 272 9.048446 TCAATTAGCGGATGTATTTACTAAACC 57.952 33.333 0.00 0.00 0.00 3.27
272 273 7.974482 ATTAGCGGATGTATTTACTAAACCC 57.026 36.000 0.00 0.00 0.00 4.11
273 274 4.374399 AGCGGATGTATTTACTAAACCCG 58.626 43.478 0.00 0.00 37.67 5.28
274 275 4.720530 CGGATGTATTTACTAAACCCGC 57.279 45.455 0.00 0.00 0.00 6.13
275 276 4.374399 CGGATGTATTTACTAAACCCGCT 58.626 43.478 0.00 0.00 0.00 5.52
276 277 5.531634 CGGATGTATTTACTAAACCCGCTA 58.468 41.667 0.00 0.00 0.00 4.26
277 278 5.403466 CGGATGTATTTACTAAACCCGCTAC 59.597 44.000 0.00 0.00 0.00 3.58
278 279 6.519382 GGATGTATTTACTAAACCCGCTACT 58.481 40.000 0.00 0.00 0.00 2.57
279 280 7.522073 CGGATGTATTTACTAAACCCGCTACTA 60.522 40.741 0.00 0.00 0.00 1.82
280 281 7.811713 GGATGTATTTACTAAACCCGCTACTAG 59.188 40.741 0.00 0.00 0.00 2.57
281 282 7.880160 TGTATTTACTAAACCCGCTACTAGA 57.120 36.000 0.00 0.00 0.00 2.43
282 283 7.707104 TGTATTTACTAAACCCGCTACTAGAC 58.293 38.462 0.00 0.00 0.00 2.59
283 284 6.780457 ATTTACTAAACCCGCTACTAGACA 57.220 37.500 0.00 0.00 0.00 3.41
284 285 5.824904 TTACTAAACCCGCTACTAGACAG 57.175 43.478 0.00 0.00 0.00 3.51
285 286 3.960571 ACTAAACCCGCTACTAGACAGA 58.039 45.455 0.00 0.00 0.00 3.41
286 287 4.534797 ACTAAACCCGCTACTAGACAGAT 58.465 43.478 0.00 0.00 0.00 2.90
287 288 3.802948 AAACCCGCTACTAGACAGATG 57.197 47.619 0.00 0.00 0.00 2.90
288 289 1.033574 ACCCGCTACTAGACAGATGC 58.966 55.000 0.00 0.00 0.00 3.91
289 290 1.323412 CCCGCTACTAGACAGATGCT 58.677 55.000 0.00 0.00 0.00 3.79
290 291 2.158652 ACCCGCTACTAGACAGATGCTA 60.159 50.000 0.00 0.00 0.00 3.49
291 292 2.486203 CCCGCTACTAGACAGATGCTAG 59.514 54.545 0.00 0.00 40.84 3.42
292 293 3.403968 CCGCTACTAGACAGATGCTAGA 58.596 50.000 14.25 3.01 38.89 2.43
293 294 4.006989 CCGCTACTAGACAGATGCTAGAT 58.993 47.826 14.25 0.00 38.89 1.98
294 295 4.094294 CCGCTACTAGACAGATGCTAGATC 59.906 50.000 14.25 0.00 38.89 2.75
295 296 4.693095 CGCTACTAGACAGATGCTAGATCA 59.307 45.833 14.25 0.00 38.89 2.92
296 297 5.353956 CGCTACTAGACAGATGCTAGATCAT 59.646 44.000 14.25 0.00 38.89 2.45
297 298 6.128035 CGCTACTAGACAGATGCTAGATCATT 60.128 42.308 14.25 0.57 38.89 2.57
298 299 7.574779 CGCTACTAGACAGATGCTAGATCATTT 60.575 40.741 14.25 0.00 38.89 2.32
299 300 8.087750 GCTACTAGACAGATGCTAGATCATTTT 58.912 37.037 14.25 0.00 38.89 1.82
302 303 9.360901 ACTAGACAGATGCTAGATCATTTTAGA 57.639 33.333 14.25 0.00 38.89 2.10
304 305 8.885494 AGACAGATGCTAGATCATTTTAGAAC 57.115 34.615 0.00 0.00 0.00 3.01
305 306 7.930865 AGACAGATGCTAGATCATTTTAGAACC 59.069 37.037 0.00 0.00 0.00 3.62
306 307 7.568349 ACAGATGCTAGATCATTTTAGAACCA 58.432 34.615 0.00 0.00 0.00 3.67
307 308 8.049117 ACAGATGCTAGATCATTTTAGAACCAA 58.951 33.333 0.00 0.00 0.00 3.67
308 309 9.064706 CAGATGCTAGATCATTTTAGAACCAAT 57.935 33.333 0.00 0.00 0.00 3.16
309 310 9.282569 AGATGCTAGATCATTTTAGAACCAATC 57.717 33.333 0.00 0.00 0.00 2.67
310 311 9.282569 GATGCTAGATCATTTTAGAACCAATCT 57.717 33.333 0.00 0.00 42.48 2.40
311 312 8.442632 TGCTAGATCATTTTAGAACCAATCTG 57.557 34.615 0.00 0.00 39.30 2.90
312 313 8.267183 TGCTAGATCATTTTAGAACCAATCTGA 58.733 33.333 0.00 0.00 39.30 3.27
313 314 9.113838 GCTAGATCATTTTAGAACCAATCTGAA 57.886 33.333 0.00 0.00 39.30 3.02
316 317 9.917887 AGATCATTTTAGAACCAATCTGAATCT 57.082 29.630 0.00 0.00 39.30 2.40
319 320 9.300681 TCATTTTAGAACCAATCTGAATCTTGT 57.699 29.630 0.00 0.00 39.30 3.16
323 324 9.739276 TTTAGAACCAATCTGAATCTTGTATGT 57.261 29.630 0.00 0.00 39.30 2.29
325 326 8.954950 AGAACCAATCTGAATCTTGTATGTAG 57.045 34.615 0.00 0.00 36.88 2.74
326 327 8.543774 AGAACCAATCTGAATCTTGTATGTAGT 58.456 33.333 0.00 0.00 36.88 2.73
327 328 9.167311 GAACCAATCTGAATCTTGTATGTAGTT 57.833 33.333 0.00 0.00 0.00 2.24
328 329 8.723942 ACCAATCTGAATCTTGTATGTAGTTC 57.276 34.615 0.00 0.00 0.00 3.01
329 330 8.321353 ACCAATCTGAATCTTGTATGTAGTTCA 58.679 33.333 0.00 0.00 0.00 3.18
330 331 8.824781 CCAATCTGAATCTTGTATGTAGTTCAG 58.175 37.037 6.59 6.59 42.22 3.02
338 339 9.838339 AATCTTGTATGTAGTTCAGATTAAGGG 57.162 33.333 0.00 0.00 0.00 3.95
339 340 7.792032 TCTTGTATGTAGTTCAGATTAAGGGG 58.208 38.462 0.00 0.00 0.00 4.79
340 341 6.494666 TGTATGTAGTTCAGATTAAGGGGG 57.505 41.667 0.00 0.00 0.00 5.40
341 342 3.926058 TGTAGTTCAGATTAAGGGGGC 57.074 47.619 0.00 0.00 0.00 5.80
342 343 3.186283 TGTAGTTCAGATTAAGGGGGCA 58.814 45.455 0.00 0.00 0.00 5.36
343 344 3.785887 TGTAGTTCAGATTAAGGGGGCAT 59.214 43.478 0.00 0.00 0.00 4.40
344 345 3.303351 AGTTCAGATTAAGGGGGCATG 57.697 47.619 0.00 0.00 0.00 4.06
345 346 2.582636 AGTTCAGATTAAGGGGGCATGT 59.417 45.455 0.00 0.00 0.00 3.21
346 347 3.785887 AGTTCAGATTAAGGGGGCATGTA 59.214 43.478 0.00 0.00 0.00 2.29
347 348 4.229582 AGTTCAGATTAAGGGGGCATGTAA 59.770 41.667 0.00 0.00 0.00 2.41
348 349 4.871871 TCAGATTAAGGGGGCATGTAAA 57.128 40.909 0.00 0.00 0.00 2.01
349 350 4.792068 TCAGATTAAGGGGGCATGTAAAG 58.208 43.478 0.00 0.00 0.00 1.85
350 351 4.229582 TCAGATTAAGGGGGCATGTAAAGT 59.770 41.667 0.00 0.00 0.00 2.66
351 352 5.430417 TCAGATTAAGGGGGCATGTAAAGTA 59.570 40.000 0.00 0.00 0.00 2.24
352 353 5.765182 CAGATTAAGGGGGCATGTAAAGTAG 59.235 44.000 0.00 0.00 0.00 2.57
353 354 4.513406 TTAAGGGGGCATGTAAAGTAGG 57.487 45.455 0.00 0.00 0.00 3.18
354 355 1.222567 AGGGGGCATGTAAAGTAGGG 58.777 55.000 0.00 0.00 0.00 3.53
355 356 0.924090 GGGGGCATGTAAAGTAGGGT 59.076 55.000 0.00 0.00 0.00 4.34
356 357 1.133884 GGGGGCATGTAAAGTAGGGTC 60.134 57.143 0.00 0.00 0.00 4.46
357 358 1.844497 GGGGCATGTAAAGTAGGGTCT 59.156 52.381 0.00 0.00 0.00 3.85
358 359 3.043418 GGGGCATGTAAAGTAGGGTCTA 58.957 50.000 0.00 0.00 0.00 2.59
359 360 3.457012 GGGGCATGTAAAGTAGGGTCTAA 59.543 47.826 0.00 0.00 0.00 2.10
360 361 4.104261 GGGGCATGTAAAGTAGGGTCTAAT 59.896 45.833 0.00 0.00 0.00 1.73
361 362 5.308759 GGGGCATGTAAAGTAGGGTCTAATA 59.691 44.000 0.00 0.00 0.00 0.98
362 363 6.012771 GGGGCATGTAAAGTAGGGTCTAATAT 60.013 42.308 0.00 0.00 0.00 1.28
363 364 7.181485 GGGGCATGTAAAGTAGGGTCTAATATA 59.819 40.741 0.00 0.00 0.00 0.86
364 365 8.769359 GGGCATGTAAAGTAGGGTCTAATATAT 58.231 37.037 0.00 0.00 0.00 0.86
422 423 7.976135 ATATTAAGATGTGAGGCTGAATGTC 57.024 36.000 0.00 0.00 0.00 3.06
423 424 3.708403 AAGATGTGAGGCTGAATGTCA 57.292 42.857 0.00 0.00 0.00 3.58
424 425 3.708403 AGATGTGAGGCTGAATGTCAA 57.292 42.857 0.00 0.00 0.00 3.18
425 426 3.341823 AGATGTGAGGCTGAATGTCAAC 58.658 45.455 0.00 0.00 0.00 3.18
426 427 2.936919 TGTGAGGCTGAATGTCAACT 57.063 45.000 0.00 0.00 0.00 3.16
427 428 4.223700 AGATGTGAGGCTGAATGTCAACTA 59.776 41.667 0.00 0.00 0.00 2.24
428 429 3.664107 TGTGAGGCTGAATGTCAACTAC 58.336 45.455 0.00 0.00 0.00 2.73
429 430 3.003480 GTGAGGCTGAATGTCAACTACC 58.997 50.000 0.00 0.00 0.00 3.18
430 431 2.027192 TGAGGCTGAATGTCAACTACCC 60.027 50.000 0.00 0.00 0.00 3.69
431 432 1.985159 AGGCTGAATGTCAACTACCCA 59.015 47.619 0.00 0.00 0.00 4.51
432 433 2.084546 GGCTGAATGTCAACTACCCAC 58.915 52.381 0.00 0.00 0.00 4.61
433 434 2.084546 GCTGAATGTCAACTACCCACC 58.915 52.381 0.00 0.00 0.00 4.61
434 435 2.711542 CTGAATGTCAACTACCCACCC 58.288 52.381 0.00 0.00 0.00 4.61
435 436 2.039746 CTGAATGTCAACTACCCACCCA 59.960 50.000 0.00 0.00 0.00 4.51
436 437 2.443632 TGAATGTCAACTACCCACCCAA 59.556 45.455 0.00 0.00 0.00 4.12
437 438 3.117474 TGAATGTCAACTACCCACCCAAA 60.117 43.478 0.00 0.00 0.00 3.28
438 439 3.603965 ATGTCAACTACCCACCCAAAA 57.396 42.857 0.00 0.00 0.00 2.44
439 440 3.383698 TGTCAACTACCCACCCAAAAA 57.616 42.857 0.00 0.00 0.00 1.94
440 441 3.025262 TGTCAACTACCCACCCAAAAAC 58.975 45.455 0.00 0.00 0.00 2.43
441 442 2.363038 GTCAACTACCCACCCAAAAACC 59.637 50.000 0.00 0.00 0.00 3.27
442 443 2.245287 TCAACTACCCACCCAAAAACCT 59.755 45.455 0.00 0.00 0.00 3.50
443 444 3.462579 TCAACTACCCACCCAAAAACCTA 59.537 43.478 0.00 0.00 0.00 3.08
444 445 4.079327 TCAACTACCCACCCAAAAACCTAA 60.079 41.667 0.00 0.00 0.00 2.69
445 446 4.539596 ACTACCCACCCAAAAACCTAAA 57.460 40.909 0.00 0.00 0.00 1.85
446 447 4.217510 ACTACCCACCCAAAAACCTAAAC 58.782 43.478 0.00 0.00 0.00 2.01
447 448 2.400573 ACCCACCCAAAAACCTAAACC 58.599 47.619 0.00 0.00 0.00 3.27
448 449 1.695242 CCCACCCAAAAACCTAAACCC 59.305 52.381 0.00 0.00 0.00 4.11
449 450 2.684943 CCACCCAAAAACCTAAACCCT 58.315 47.619 0.00 0.00 0.00 4.34
450 451 2.367241 CCACCCAAAAACCTAAACCCTG 59.633 50.000 0.00 0.00 0.00 4.45
451 452 3.035363 CACCCAAAAACCTAAACCCTGT 58.965 45.455 0.00 0.00 0.00 4.00
452 453 3.035363 ACCCAAAAACCTAAACCCTGTG 58.965 45.455 0.00 0.00 0.00 3.66
453 454 3.035363 CCCAAAAACCTAAACCCTGTGT 58.965 45.455 0.00 0.00 0.00 3.72
454 455 3.452990 CCCAAAAACCTAAACCCTGTGTT 59.547 43.478 0.00 0.00 39.43 3.32
456 457 5.113383 CCAAAAACCTAAACCCTGTGTTTC 58.887 41.667 0.00 0.00 43.74 2.78
457 458 5.337652 CCAAAAACCTAAACCCTGTGTTTCA 60.338 40.000 0.00 0.00 43.74 2.69
458 459 6.166982 CAAAAACCTAAACCCTGTGTTTCAA 58.833 36.000 0.00 0.00 43.74 2.69
459 460 4.994907 AACCTAAACCCTGTGTTTCAAC 57.005 40.909 0.00 0.00 43.74 3.18
460 461 4.245251 ACCTAAACCCTGTGTTTCAACT 57.755 40.909 0.00 0.00 43.74 3.16
465 466 1.202651 ACCCTGTGTTTCAACTCTCCG 60.203 52.381 0.00 0.00 0.00 4.63
480 481 1.002403 TCCGTTCCCTGCCATCCTA 59.998 57.895 0.00 0.00 0.00 2.94
484 485 0.464554 GTTCCCTGCCATCCTACTGC 60.465 60.000 0.00 0.00 0.00 4.40
504 505 2.492088 GCTTCGATTAAAAAGCAGGGGT 59.508 45.455 12.94 0.00 45.67 4.95
527 528 0.690762 TCTGCAGAAACCCCTACACC 59.309 55.000 15.67 0.00 0.00 4.16
569 570 0.573987 CTATGATCTGTGCACACGCG 59.426 55.000 17.42 3.53 42.97 6.01
575 576 3.227372 CTGTGCACACGCGGACAAG 62.227 63.158 17.42 0.00 42.97 3.16
716 720 1.743252 GCTCACACTACCAGCAGCC 60.743 63.158 0.00 0.00 33.06 4.85
819 823 5.179368 CCTGCTACAATCCAAACCATATACG 59.821 44.000 0.00 0.00 0.00 3.06
820 824 5.676552 TGCTACAATCCAAACCATATACGT 58.323 37.500 0.00 0.00 0.00 3.57
821 825 6.818233 TGCTACAATCCAAACCATATACGTA 58.182 36.000 0.00 0.00 0.00 3.57
822 826 6.702723 TGCTACAATCCAAACCATATACGTAC 59.297 38.462 0.00 0.00 0.00 3.67
888 898 1.544537 CCGATCAACACTTGGAACCCA 60.545 52.381 0.00 0.00 0.00 4.51
1386 1421 2.427245 CCTGAGGAGCTACACCCCG 61.427 68.421 0.00 0.00 0.00 5.73
1708 1748 3.610114 CGTGTTGATCTTCTTTGCCCTTG 60.610 47.826 0.00 0.00 0.00 3.61
1812 1857 0.668706 CTTCTGCTCGTGGTGTCCTG 60.669 60.000 0.00 0.00 0.00 3.86
2020 2069 1.887198 CTACTCAACTGACTCCACCGT 59.113 52.381 0.00 0.00 0.00 4.83
2066 2115 3.055094 TCTTCTCCCCTCCTGATTTTTCG 60.055 47.826 0.00 0.00 0.00 3.46
2068 2117 2.642807 TCTCCCCTCCTGATTTTTCGTT 59.357 45.455 0.00 0.00 0.00 3.85
2069 2118 3.073946 TCTCCCCTCCTGATTTTTCGTTT 59.926 43.478 0.00 0.00 0.00 3.60
2070 2119 3.418047 TCCCCTCCTGATTTTTCGTTTC 58.582 45.455 0.00 0.00 0.00 2.78
2071 2120 3.073946 TCCCCTCCTGATTTTTCGTTTCT 59.926 43.478 0.00 0.00 0.00 2.52
2072 2121 3.826729 CCCCTCCTGATTTTTCGTTTCTT 59.173 43.478 0.00 0.00 0.00 2.52
2102 2151 5.283012 GCCGAAAATCGTAGAACAATTGTTC 59.717 40.000 34.21 34.21 45.03 3.18
2177 2226 1.149401 GAAGCCAGCCACCTATCCC 59.851 63.158 0.00 0.00 0.00 3.85
2185 2234 1.411651 GCCACCTATCCCCTCCTGAC 61.412 65.000 0.00 0.00 0.00 3.51
2195 2244 1.407437 CCCCTCCTGACATAACTGTGC 60.407 57.143 0.00 0.00 35.14 4.57
2219 2268 5.335426 CCATGTTCTTGAGATGAAACACCAG 60.335 44.000 0.00 0.00 30.82 4.00
2238 2289 3.427773 CCAGAGGAAGTTCGCTAGTACAC 60.428 52.174 0.00 0.00 0.00 2.90
2271 2322 4.819088 TGAAATGCTAGTACAAGTGTTGCA 59.181 37.500 0.00 0.00 0.00 4.08
2273 2324 4.749245 ATGCTAGTACAAGTGTTGCAAC 57.251 40.909 22.83 22.83 32.66 4.17
2274 2325 3.536570 TGCTAGTACAAGTGTTGCAACA 58.463 40.909 27.96 27.96 36.38 3.33
2275 2326 3.942115 TGCTAGTACAAGTGTTGCAACAA 59.058 39.130 32.61 15.17 41.21 2.83
2276 2327 4.201871 TGCTAGTACAAGTGTTGCAACAAC 60.202 41.667 32.61 25.08 41.21 3.32
2329 2387 3.678252 CGGATTCTCTATGGCTATGGCTG 60.678 52.174 0.00 0.00 38.73 4.85
2346 2404 2.216898 GCTGGAAGGAATGGATTCTCG 58.783 52.381 0.00 0.00 37.00 4.04
2413 2471 0.249120 AGAACCATTCGGCGTGATCA 59.751 50.000 6.85 0.00 34.57 2.92
2452 2510 6.779117 TCTCTTGCGAATGATTTCTTGATTC 58.221 36.000 0.00 0.00 0.00 2.52
2521 2582 7.011389 CGAATCATGCACTCTGTTCCTAAATAA 59.989 37.037 0.00 0.00 0.00 1.40
2525 2586 8.486210 TCATGCACTCTGTTCCTAAATAATACT 58.514 33.333 0.00 0.00 0.00 2.12
2529 2590 7.769044 GCACTCTGTTCCTAAATAATACTTCCA 59.231 37.037 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.406764 CCAATGCCTTATACTCTGCCTC 58.593 50.000 0.00 0.00 0.00 4.70
1 2 2.487986 GCCAATGCCTTATACTCTGCCT 60.488 50.000 0.00 0.00 0.00 4.75
2 3 1.882623 GCCAATGCCTTATACTCTGCC 59.117 52.381 0.00 0.00 0.00 4.85
22 23 4.183686 CTTCAGCCGCGCCATTGG 62.184 66.667 0.00 0.00 0.00 3.16
23 24 4.842091 GCTTCAGCCGCGCCATTG 62.842 66.667 0.00 0.00 34.31 2.82
33 34 3.549794 AGTCTATCCAAATGGCTTCAGC 58.450 45.455 0.00 0.00 41.14 4.26
34 35 4.774124 TGAGTCTATCCAAATGGCTTCAG 58.226 43.478 0.00 0.00 34.44 3.02
35 36 4.225942 ACTGAGTCTATCCAAATGGCTTCA 59.774 41.667 0.00 0.00 34.44 3.02
36 37 4.775236 ACTGAGTCTATCCAAATGGCTTC 58.225 43.478 0.00 0.00 34.44 3.86
37 38 4.851639 ACTGAGTCTATCCAAATGGCTT 57.148 40.909 0.00 0.00 34.44 4.35
38 39 4.472833 AGAACTGAGTCTATCCAAATGGCT 59.527 41.667 0.00 0.00 34.44 4.75
39 40 4.775236 AGAACTGAGTCTATCCAAATGGC 58.225 43.478 0.00 0.00 34.44 4.40
40 41 5.814705 GTGAGAACTGAGTCTATCCAAATGG 59.185 44.000 0.00 0.00 0.00 3.16
41 42 6.401394 TGTGAGAACTGAGTCTATCCAAATG 58.599 40.000 0.00 0.00 0.00 2.32
42 43 6.351711 CCTGTGAGAACTGAGTCTATCCAAAT 60.352 42.308 0.00 0.00 0.00 2.32
43 44 5.047021 CCTGTGAGAACTGAGTCTATCCAAA 60.047 44.000 0.00 0.00 0.00 3.28
44 45 4.464244 CCTGTGAGAACTGAGTCTATCCAA 59.536 45.833 0.00 0.00 0.00 3.53
45 46 4.019858 CCTGTGAGAACTGAGTCTATCCA 58.980 47.826 0.00 0.00 0.00 3.41
46 47 4.097286 GTCCTGTGAGAACTGAGTCTATCC 59.903 50.000 0.00 0.00 0.00 2.59
47 48 4.947388 AGTCCTGTGAGAACTGAGTCTATC 59.053 45.833 0.00 0.00 0.00 2.08
48 49 4.929479 AGTCCTGTGAGAACTGAGTCTAT 58.071 43.478 0.00 0.00 0.00 1.98
49 50 4.374689 AGTCCTGTGAGAACTGAGTCTA 57.625 45.455 0.00 0.00 0.00 2.59
50 51 3.237268 AGTCCTGTGAGAACTGAGTCT 57.763 47.619 0.00 0.00 0.00 3.24
51 52 3.553922 CCAAGTCCTGTGAGAACTGAGTC 60.554 52.174 0.00 0.00 0.00 3.36
52 53 2.366916 CCAAGTCCTGTGAGAACTGAGT 59.633 50.000 0.00 0.00 0.00 3.41
53 54 2.630098 TCCAAGTCCTGTGAGAACTGAG 59.370 50.000 0.00 0.00 0.00 3.35
54 55 2.630098 CTCCAAGTCCTGTGAGAACTGA 59.370 50.000 0.00 0.00 0.00 3.41
55 56 2.366916 ACTCCAAGTCCTGTGAGAACTG 59.633 50.000 0.00 0.00 0.00 3.16
56 57 2.630580 GACTCCAAGTCCTGTGAGAACT 59.369 50.000 0.00 0.00 39.28 3.01
57 58 3.033368 GACTCCAAGTCCTGTGAGAAC 57.967 52.381 0.00 0.00 39.28 3.01
67 68 2.047179 GCCGTGGGACTCCAAGTC 60.047 66.667 0.00 0.00 46.04 3.01
68 69 2.448582 TTGCCGTGGGACTCCAAGT 61.449 57.895 0.00 0.00 46.04 3.16
69 70 1.966451 GTTGCCGTGGGACTCCAAG 60.966 63.158 0.00 0.00 46.04 3.61
70 71 2.112297 GTTGCCGTGGGACTCCAA 59.888 61.111 0.00 0.00 46.04 3.53
71 72 4.308458 CGTTGCCGTGGGACTCCA 62.308 66.667 0.00 0.00 41.58 3.86
73 74 4.980805 TGCGTTGCCGTGGGACTC 62.981 66.667 0.00 0.00 36.15 3.36
79 80 2.581208 TATAGGGGTGCGTTGCCGTG 62.581 60.000 0.00 0.00 36.15 4.94
80 81 1.692173 ATATAGGGGTGCGTTGCCGT 61.692 55.000 0.00 0.00 36.15 5.68
81 82 0.534203 AATATAGGGGTGCGTTGCCG 60.534 55.000 0.00 0.00 37.07 5.69
82 83 1.202770 AGAATATAGGGGTGCGTTGCC 60.203 52.381 0.00 0.00 0.00 4.52
83 84 1.873591 CAGAATATAGGGGTGCGTTGC 59.126 52.381 0.00 0.00 0.00 4.17
84 85 2.158813 ACCAGAATATAGGGGTGCGTTG 60.159 50.000 0.00 0.00 31.04 4.10
85 86 2.124411 ACCAGAATATAGGGGTGCGTT 58.876 47.619 0.00 0.00 31.04 4.84
86 87 1.416401 CACCAGAATATAGGGGTGCGT 59.584 52.381 6.65 0.00 43.70 5.24
87 88 2.169832 CACCAGAATATAGGGGTGCG 57.830 55.000 6.65 0.00 43.70 5.34
90 91 6.151049 AGTTATCACACCAGAATATAGGGGT 58.849 40.000 0.00 0.00 43.89 4.95
91 92 6.688073 AGTTATCACACCAGAATATAGGGG 57.312 41.667 0.00 0.00 0.00 4.79
92 93 8.314751 CCTAAGTTATCACACCAGAATATAGGG 58.685 40.741 0.00 0.00 0.00 3.53
93 94 8.314751 CCCTAAGTTATCACACCAGAATATAGG 58.685 40.741 0.00 0.00 0.00 2.57
94 95 9.090103 TCCCTAAGTTATCACACCAGAATATAG 57.910 37.037 0.00 0.00 0.00 1.31
95 96 8.867097 GTCCCTAAGTTATCACACCAGAATATA 58.133 37.037 0.00 0.00 0.00 0.86
96 97 7.347222 TGTCCCTAAGTTATCACACCAGAATAT 59.653 37.037 0.00 0.00 0.00 1.28
97 98 6.670464 TGTCCCTAAGTTATCACACCAGAATA 59.330 38.462 0.00 0.00 0.00 1.75
98 99 5.487488 TGTCCCTAAGTTATCACACCAGAAT 59.513 40.000 0.00 0.00 0.00 2.40
99 100 4.841813 TGTCCCTAAGTTATCACACCAGAA 59.158 41.667 0.00 0.00 0.00 3.02
100 101 4.422057 TGTCCCTAAGTTATCACACCAGA 58.578 43.478 0.00 0.00 0.00 3.86
101 102 4.819105 TGTCCCTAAGTTATCACACCAG 57.181 45.455 0.00 0.00 0.00 4.00
102 103 4.595781 AGTTGTCCCTAAGTTATCACACCA 59.404 41.667 0.00 0.00 0.00 4.17
103 104 5.161943 AGTTGTCCCTAAGTTATCACACC 57.838 43.478 0.00 0.00 0.00 4.16
104 105 7.156673 TGTAAGTTGTCCCTAAGTTATCACAC 58.843 38.462 0.00 0.00 30.60 3.82
105 106 7.305813 TGTAAGTTGTCCCTAAGTTATCACA 57.694 36.000 0.00 0.00 30.60 3.58
106 107 8.038944 TCATGTAAGTTGTCCCTAAGTTATCAC 58.961 37.037 0.00 0.00 30.60 3.06
107 108 8.038944 GTCATGTAAGTTGTCCCTAAGTTATCA 58.961 37.037 0.00 0.00 30.60 2.15
108 109 7.222224 CGTCATGTAAGTTGTCCCTAAGTTATC 59.778 40.741 0.00 0.00 30.60 1.75
109 110 7.039882 CGTCATGTAAGTTGTCCCTAAGTTAT 58.960 38.462 0.00 0.00 30.60 1.89
110 111 6.392354 CGTCATGTAAGTTGTCCCTAAGTTA 58.608 40.000 0.00 0.00 0.00 2.24
111 112 5.235516 CGTCATGTAAGTTGTCCCTAAGTT 58.764 41.667 0.00 0.00 0.00 2.66
112 113 4.322499 CCGTCATGTAAGTTGTCCCTAAGT 60.322 45.833 0.00 0.00 0.00 2.24
113 114 4.181578 CCGTCATGTAAGTTGTCCCTAAG 58.818 47.826 0.00 0.00 0.00 2.18
114 115 3.618019 GCCGTCATGTAAGTTGTCCCTAA 60.618 47.826 0.00 0.00 0.00 2.69
115 116 2.093869 GCCGTCATGTAAGTTGTCCCTA 60.094 50.000 0.00 0.00 0.00 3.53
116 117 1.338769 GCCGTCATGTAAGTTGTCCCT 60.339 52.381 0.00 0.00 0.00 4.20
117 118 1.084289 GCCGTCATGTAAGTTGTCCC 58.916 55.000 0.00 0.00 0.00 4.46
118 119 0.719465 CGCCGTCATGTAAGTTGTCC 59.281 55.000 0.00 0.00 0.00 4.02
119 120 1.705256 TCGCCGTCATGTAAGTTGTC 58.295 50.000 0.00 0.00 0.00 3.18
120 121 2.157834 TTCGCCGTCATGTAAGTTGT 57.842 45.000 0.00 0.00 0.00 3.32
121 122 2.030457 GGATTCGCCGTCATGTAAGTTG 59.970 50.000 0.00 0.00 0.00 3.16
122 123 2.277084 GGATTCGCCGTCATGTAAGTT 58.723 47.619 0.00 0.00 0.00 2.66
123 124 1.206132 TGGATTCGCCGTCATGTAAGT 59.794 47.619 0.00 0.00 40.66 2.24
124 125 1.860950 CTGGATTCGCCGTCATGTAAG 59.139 52.381 0.00 0.00 40.66 2.34
125 126 1.206132 ACTGGATTCGCCGTCATGTAA 59.794 47.619 0.00 0.00 40.66 2.41
126 127 0.821517 ACTGGATTCGCCGTCATGTA 59.178 50.000 0.00 0.00 40.66 2.29
127 128 0.740868 CACTGGATTCGCCGTCATGT 60.741 55.000 0.00 0.00 40.66 3.21
128 129 0.740868 ACACTGGATTCGCCGTCATG 60.741 55.000 0.00 0.00 40.66 3.07
129 130 0.036388 AACACTGGATTCGCCGTCAT 60.036 50.000 0.00 0.00 40.66 3.06
130 131 0.250124 AAACACTGGATTCGCCGTCA 60.250 50.000 0.00 0.00 40.66 4.35
131 132 0.872388 AAAACACTGGATTCGCCGTC 59.128 50.000 0.00 0.00 40.66 4.79
132 133 2.172851 TAAAACACTGGATTCGCCGT 57.827 45.000 0.00 0.00 40.66 5.68
133 134 2.791158 GCATAAAACACTGGATTCGCCG 60.791 50.000 0.00 0.00 40.66 6.46
134 135 2.423538 AGCATAAAACACTGGATTCGCC 59.576 45.455 0.00 0.00 37.10 5.54
135 136 3.685058 GAGCATAAAACACTGGATTCGC 58.315 45.455 0.00 0.00 0.00 4.70
136 137 3.242413 CCGAGCATAAAACACTGGATTCG 60.242 47.826 0.00 0.00 0.00 3.34
137 138 3.938963 TCCGAGCATAAAACACTGGATTC 59.061 43.478 0.00 0.00 0.00 2.52
138 139 3.689649 GTCCGAGCATAAAACACTGGATT 59.310 43.478 0.00 0.00 0.00 3.01
139 140 3.055094 AGTCCGAGCATAAAACACTGGAT 60.055 43.478 0.00 0.00 0.00 3.41
140 141 2.301870 AGTCCGAGCATAAAACACTGGA 59.698 45.455 0.00 0.00 0.00 3.86
141 142 2.699954 AGTCCGAGCATAAAACACTGG 58.300 47.619 0.00 0.00 0.00 4.00
142 143 5.178623 TGTTTAGTCCGAGCATAAAACACTG 59.821 40.000 0.00 0.00 33.31 3.66
143 144 5.178809 GTGTTTAGTCCGAGCATAAAACACT 59.821 40.000 17.18 0.00 46.54 3.55
144 145 5.379827 GTGTTTAGTCCGAGCATAAAACAC 58.620 41.667 11.64 11.64 45.14 3.32
145 146 5.057819 TGTGTTTAGTCCGAGCATAAAACA 58.942 37.500 0.00 0.00 35.21 2.83
146 147 5.600908 TGTGTTTAGTCCGAGCATAAAAC 57.399 39.130 0.00 0.00 0.00 2.43
147 148 6.428465 TCAATGTGTTTAGTCCGAGCATAAAA 59.572 34.615 0.00 0.00 0.00 1.52
148 149 5.935206 TCAATGTGTTTAGTCCGAGCATAAA 59.065 36.000 0.00 0.00 0.00 1.40
149 150 5.483811 TCAATGTGTTTAGTCCGAGCATAA 58.516 37.500 0.00 0.00 0.00 1.90
150 151 5.079689 TCAATGTGTTTAGTCCGAGCATA 57.920 39.130 0.00 0.00 0.00 3.14
151 152 3.935203 CTCAATGTGTTTAGTCCGAGCAT 59.065 43.478 0.00 0.00 0.00 3.79
152 153 3.006430 TCTCAATGTGTTTAGTCCGAGCA 59.994 43.478 0.00 0.00 0.00 4.26
153 154 3.585862 TCTCAATGTGTTTAGTCCGAGC 58.414 45.455 0.00 0.00 0.00 5.03
154 155 5.869344 TCAATCTCAATGTGTTTAGTCCGAG 59.131 40.000 0.00 0.00 0.00 4.63
155 156 5.789521 TCAATCTCAATGTGTTTAGTCCGA 58.210 37.500 0.00 0.00 0.00 4.55
156 157 6.668541 ATCAATCTCAATGTGTTTAGTCCG 57.331 37.500 0.00 0.00 0.00 4.79
157 158 8.734386 AGAAATCAATCTCAATGTGTTTAGTCC 58.266 33.333 0.00 0.00 0.00 3.85
170 171 9.948964 TCTCTCACAAAATAGAAATCAATCTCA 57.051 29.630 0.00 0.00 0.00 3.27
176 177 9.730705 ACTCATTCTCTCACAAAATAGAAATCA 57.269 29.630 0.00 0.00 32.13 2.57
177 178 9.985318 CACTCATTCTCTCACAAAATAGAAATC 57.015 33.333 0.00 0.00 32.13 2.17
178 179 8.954350 CCACTCATTCTCTCACAAAATAGAAAT 58.046 33.333 0.00 0.00 32.13 2.17
179 180 7.094634 GCCACTCATTCTCTCACAAAATAGAAA 60.095 37.037 0.00 0.00 32.13 2.52
180 181 6.372659 GCCACTCATTCTCTCACAAAATAGAA 59.627 38.462 0.00 0.00 32.85 2.10
181 182 5.877012 GCCACTCATTCTCTCACAAAATAGA 59.123 40.000 0.00 0.00 0.00 1.98
182 183 5.879223 AGCCACTCATTCTCTCACAAAATAG 59.121 40.000 0.00 0.00 0.00 1.73
183 184 5.645067 CAGCCACTCATTCTCTCACAAAATA 59.355 40.000 0.00 0.00 0.00 1.40
184 185 4.458295 CAGCCACTCATTCTCTCACAAAAT 59.542 41.667 0.00 0.00 0.00 1.82
185 186 3.817084 CAGCCACTCATTCTCTCACAAAA 59.183 43.478 0.00 0.00 0.00 2.44
186 187 3.405831 CAGCCACTCATTCTCTCACAAA 58.594 45.455 0.00 0.00 0.00 2.83
187 188 2.873245 GCAGCCACTCATTCTCTCACAA 60.873 50.000 0.00 0.00 0.00 3.33
188 189 1.338484 GCAGCCACTCATTCTCTCACA 60.338 52.381 0.00 0.00 0.00 3.58
189 190 1.066286 AGCAGCCACTCATTCTCTCAC 60.066 52.381 0.00 0.00 0.00 3.51
190 191 1.273759 AGCAGCCACTCATTCTCTCA 58.726 50.000 0.00 0.00 0.00 3.27
191 192 2.008329 CAAGCAGCCACTCATTCTCTC 58.992 52.381 0.00 0.00 0.00 3.20
192 193 1.350351 ACAAGCAGCCACTCATTCTCT 59.650 47.619 0.00 0.00 0.00 3.10
193 194 1.467734 CACAAGCAGCCACTCATTCTC 59.532 52.381 0.00 0.00 0.00 2.87
194 195 1.072806 TCACAAGCAGCCACTCATTCT 59.927 47.619 0.00 0.00 0.00 2.40
195 196 1.527034 TCACAAGCAGCCACTCATTC 58.473 50.000 0.00 0.00 0.00 2.67
196 197 1.610522 GTTCACAAGCAGCCACTCATT 59.389 47.619 0.00 0.00 0.00 2.57
197 198 1.202855 AGTTCACAAGCAGCCACTCAT 60.203 47.619 0.00 0.00 0.00 2.90
198 199 0.181114 AGTTCACAAGCAGCCACTCA 59.819 50.000 0.00 0.00 0.00 3.41
199 200 0.590195 CAGTTCACAAGCAGCCACTC 59.410 55.000 0.00 0.00 0.00 3.51
200 201 0.820891 CCAGTTCACAAGCAGCCACT 60.821 55.000 0.00 0.00 0.00 4.00
201 202 0.819259 TCCAGTTCACAAGCAGCCAC 60.819 55.000 0.00 0.00 0.00 5.01
202 203 0.106769 TTCCAGTTCACAAGCAGCCA 60.107 50.000 0.00 0.00 0.00 4.75
203 204 1.251251 ATTCCAGTTCACAAGCAGCC 58.749 50.000 0.00 0.00 0.00 4.85
204 205 2.666619 CGAATTCCAGTTCACAAGCAGC 60.667 50.000 0.00 0.00 0.00 5.25
205 206 2.095567 CCGAATTCCAGTTCACAAGCAG 60.096 50.000 0.00 0.00 0.00 4.24
206 207 1.879380 CCGAATTCCAGTTCACAAGCA 59.121 47.619 0.00 0.00 0.00 3.91
207 208 1.200020 CCCGAATTCCAGTTCACAAGC 59.800 52.381 0.00 0.00 0.00 4.01
208 209 2.504367 ACCCGAATTCCAGTTCACAAG 58.496 47.619 0.00 0.00 0.00 3.16
209 210 2.649531 ACCCGAATTCCAGTTCACAA 57.350 45.000 0.00 0.00 0.00 3.33
210 211 2.649531 AACCCGAATTCCAGTTCACA 57.350 45.000 0.00 0.00 0.00 3.58
211 212 5.638596 AATAAACCCGAATTCCAGTTCAC 57.361 39.130 7.90 0.00 0.00 3.18
212 213 6.007703 AGAAATAAACCCGAATTCCAGTTCA 58.992 36.000 7.90 0.00 0.00 3.18
213 214 6.510879 AGAAATAAACCCGAATTCCAGTTC 57.489 37.500 7.90 0.00 0.00 3.01
214 215 6.943718 TGTAGAAATAAACCCGAATTCCAGTT 59.056 34.615 0.00 0.90 0.00 3.16
215 216 6.478129 TGTAGAAATAAACCCGAATTCCAGT 58.522 36.000 0.00 0.00 0.00 4.00
216 217 6.821665 TCTGTAGAAATAAACCCGAATTCCAG 59.178 38.462 0.00 0.00 0.00 3.86
217 218 6.713276 TCTGTAGAAATAAACCCGAATTCCA 58.287 36.000 0.00 0.00 0.00 3.53
218 219 7.497909 TCATCTGTAGAAATAAACCCGAATTCC 59.502 37.037 0.00 0.00 0.00 3.01
219 220 8.433421 TCATCTGTAGAAATAAACCCGAATTC 57.567 34.615 0.00 0.00 0.00 2.17
220 221 8.980481 ATCATCTGTAGAAATAAACCCGAATT 57.020 30.769 0.00 0.00 0.00 2.17
221 222 8.210946 TGATCATCTGTAGAAATAAACCCGAAT 58.789 33.333 0.00 0.00 0.00 3.34
222 223 7.561251 TGATCATCTGTAGAAATAAACCCGAA 58.439 34.615 0.00 0.00 0.00 4.30
223 224 7.119709 TGATCATCTGTAGAAATAAACCCGA 57.880 36.000 0.00 0.00 0.00 5.14
224 225 7.786178 TTGATCATCTGTAGAAATAAACCCG 57.214 36.000 0.00 0.00 0.00 5.28
229 230 9.208022 CCGCTAATTGATCATCTGTAGAAATAA 57.792 33.333 0.00 0.00 0.00 1.40
230 231 8.585018 TCCGCTAATTGATCATCTGTAGAAATA 58.415 33.333 0.00 0.00 0.00 1.40
231 232 7.445121 TCCGCTAATTGATCATCTGTAGAAAT 58.555 34.615 0.00 0.00 0.00 2.17
232 233 6.816136 TCCGCTAATTGATCATCTGTAGAAA 58.184 36.000 0.00 0.00 0.00 2.52
233 234 6.405278 TCCGCTAATTGATCATCTGTAGAA 57.595 37.500 0.00 0.00 0.00 2.10
234 235 6.015095 ACATCCGCTAATTGATCATCTGTAGA 60.015 38.462 0.00 0.00 0.00 2.59
235 236 6.162079 ACATCCGCTAATTGATCATCTGTAG 58.838 40.000 0.00 0.00 0.00 2.74
236 237 6.101650 ACATCCGCTAATTGATCATCTGTA 57.898 37.500 0.00 0.00 0.00 2.74
237 238 4.965814 ACATCCGCTAATTGATCATCTGT 58.034 39.130 0.00 0.00 0.00 3.41
238 239 7.606858 AATACATCCGCTAATTGATCATCTG 57.393 36.000 0.00 0.00 0.00 2.90
239 240 9.155975 GTAAATACATCCGCTAATTGATCATCT 57.844 33.333 0.00 0.00 0.00 2.90
240 241 9.155975 AGTAAATACATCCGCTAATTGATCATC 57.844 33.333 0.00 0.00 0.00 2.92
242 243 9.990360 TTAGTAAATACATCCGCTAATTGATCA 57.010 29.630 0.00 0.00 0.00 2.92
245 246 9.048446 GGTTTAGTAAATACATCCGCTAATTGA 57.952 33.333 0.00 0.00 0.00 2.57
246 247 8.287503 GGGTTTAGTAAATACATCCGCTAATTG 58.712 37.037 0.00 0.00 0.00 2.32
247 248 7.172019 CGGGTTTAGTAAATACATCCGCTAATT 59.828 37.037 0.00 0.00 0.00 1.40
248 249 6.647895 CGGGTTTAGTAAATACATCCGCTAAT 59.352 38.462 0.00 0.00 0.00 1.73
249 250 5.984926 CGGGTTTAGTAAATACATCCGCTAA 59.015 40.000 0.00 0.00 0.00 3.09
250 251 5.531634 CGGGTTTAGTAAATACATCCGCTA 58.468 41.667 0.00 0.00 0.00 4.26
251 252 4.374399 CGGGTTTAGTAAATACATCCGCT 58.626 43.478 0.00 0.00 0.00 5.52
252 253 4.720530 CGGGTTTAGTAAATACATCCGC 57.279 45.455 0.00 0.00 0.00 5.54
253 254 4.374399 AGCGGGTTTAGTAAATACATCCG 58.626 43.478 0.00 8.67 38.17 4.18
254 255 6.519382 AGTAGCGGGTTTAGTAAATACATCC 58.481 40.000 0.00 0.00 0.00 3.51
255 256 8.571336 TCTAGTAGCGGGTTTAGTAAATACATC 58.429 37.037 0.00 0.00 0.00 3.06
256 257 8.355913 GTCTAGTAGCGGGTTTAGTAAATACAT 58.644 37.037 0.00 0.00 0.00 2.29
257 258 7.339212 TGTCTAGTAGCGGGTTTAGTAAATACA 59.661 37.037 0.00 0.00 0.00 2.29
258 259 7.707104 TGTCTAGTAGCGGGTTTAGTAAATAC 58.293 38.462 0.00 0.00 0.00 1.89
259 260 7.775093 TCTGTCTAGTAGCGGGTTTAGTAAATA 59.225 37.037 0.00 0.00 0.00 1.40
260 261 6.604795 TCTGTCTAGTAGCGGGTTTAGTAAAT 59.395 38.462 0.00 0.00 0.00 1.40
261 262 5.945784 TCTGTCTAGTAGCGGGTTTAGTAAA 59.054 40.000 0.00 0.00 0.00 2.01
262 263 5.500234 TCTGTCTAGTAGCGGGTTTAGTAA 58.500 41.667 0.00 0.00 0.00 2.24
263 264 5.102953 TCTGTCTAGTAGCGGGTTTAGTA 57.897 43.478 0.00 0.00 0.00 1.82
264 265 3.960571 TCTGTCTAGTAGCGGGTTTAGT 58.039 45.455 0.00 0.00 0.00 2.24
265 266 4.793353 GCATCTGTCTAGTAGCGGGTTTAG 60.793 50.000 0.00 0.00 0.00 1.85
266 267 3.067742 GCATCTGTCTAGTAGCGGGTTTA 59.932 47.826 0.00 0.00 0.00 2.01
267 268 2.159085 GCATCTGTCTAGTAGCGGGTTT 60.159 50.000 0.00 0.00 0.00 3.27
268 269 1.409427 GCATCTGTCTAGTAGCGGGTT 59.591 52.381 0.00 0.00 0.00 4.11
269 270 1.033574 GCATCTGTCTAGTAGCGGGT 58.966 55.000 0.00 0.00 0.00 5.28
270 271 1.323412 AGCATCTGTCTAGTAGCGGG 58.677 55.000 0.00 0.00 32.68 6.13
271 272 3.403968 TCTAGCATCTGTCTAGTAGCGG 58.596 50.000 0.00 0.00 36.00 5.52
272 273 4.693095 TGATCTAGCATCTGTCTAGTAGCG 59.307 45.833 0.00 0.00 36.00 4.26
273 274 6.757897 ATGATCTAGCATCTGTCTAGTAGC 57.242 41.667 0.00 0.00 36.00 3.58
276 277 9.360901 TCTAAAATGATCTAGCATCTGTCTAGT 57.639 33.333 0.00 0.00 36.00 2.57
278 279 9.973450 GTTCTAAAATGATCTAGCATCTGTCTA 57.027 33.333 0.00 0.00 0.00 2.59
279 280 7.930865 GGTTCTAAAATGATCTAGCATCTGTCT 59.069 37.037 0.00 0.00 0.00 3.41
280 281 7.712639 TGGTTCTAAAATGATCTAGCATCTGTC 59.287 37.037 0.00 0.00 0.00 3.51
281 282 7.568349 TGGTTCTAAAATGATCTAGCATCTGT 58.432 34.615 0.00 0.00 0.00 3.41
282 283 8.442632 TTGGTTCTAAAATGATCTAGCATCTG 57.557 34.615 0.00 0.00 0.00 2.90
283 284 9.282569 GATTGGTTCTAAAATGATCTAGCATCT 57.717 33.333 0.00 0.00 0.00 2.90
284 285 9.282569 AGATTGGTTCTAAAATGATCTAGCATC 57.717 33.333 0.00 0.00 30.96 3.91
285 286 9.064706 CAGATTGGTTCTAAAATGATCTAGCAT 57.935 33.333 0.00 0.00 31.77 3.79
286 287 8.267183 TCAGATTGGTTCTAAAATGATCTAGCA 58.733 33.333 0.00 0.00 31.77 3.49
287 288 8.668510 TCAGATTGGTTCTAAAATGATCTAGC 57.331 34.615 0.00 0.00 31.77 3.42
290 291 9.917887 AGATTCAGATTGGTTCTAAAATGATCT 57.082 29.630 0.00 0.00 31.77 2.75
293 294 9.300681 ACAAGATTCAGATTGGTTCTAAAATGA 57.699 29.630 0.00 0.00 31.77 2.57
297 298 9.739276 ACATACAAGATTCAGATTGGTTCTAAA 57.261 29.630 0.00 0.00 31.77 1.85
300 301 8.543774 ACTACATACAAGATTCAGATTGGTTCT 58.456 33.333 0.00 0.00 33.90 3.01
301 302 8.723942 ACTACATACAAGATTCAGATTGGTTC 57.276 34.615 0.00 0.00 0.00 3.62
302 303 9.167311 GAACTACATACAAGATTCAGATTGGTT 57.833 33.333 0.00 0.00 0.00 3.67
303 304 8.321353 TGAACTACATACAAGATTCAGATTGGT 58.679 33.333 0.00 0.00 0.00 3.67
304 305 8.722480 TGAACTACATACAAGATTCAGATTGG 57.278 34.615 0.00 0.00 0.00 3.16
305 306 9.591792 TCTGAACTACATACAAGATTCAGATTG 57.408 33.333 9.76 0.00 44.26 2.67
312 313 9.838339 CCCTTAATCTGAACTACATACAAGATT 57.162 33.333 0.00 0.00 0.00 2.40
313 314 8.432805 CCCCTTAATCTGAACTACATACAAGAT 58.567 37.037 0.00 0.00 0.00 2.40
314 315 7.147549 CCCCCTTAATCTGAACTACATACAAGA 60.148 40.741 0.00 0.00 0.00 3.02
315 316 6.992715 CCCCCTTAATCTGAACTACATACAAG 59.007 42.308 0.00 0.00 0.00 3.16
316 317 6.634039 GCCCCCTTAATCTGAACTACATACAA 60.634 42.308 0.00 0.00 0.00 2.41
317 318 5.163237 GCCCCCTTAATCTGAACTACATACA 60.163 44.000 0.00 0.00 0.00 2.29
318 319 5.163237 TGCCCCCTTAATCTGAACTACATAC 60.163 44.000 0.00 0.00 0.00 2.39
319 320 4.972568 TGCCCCCTTAATCTGAACTACATA 59.027 41.667 0.00 0.00 0.00 2.29
320 321 3.785887 TGCCCCCTTAATCTGAACTACAT 59.214 43.478 0.00 0.00 0.00 2.29
321 322 3.186283 TGCCCCCTTAATCTGAACTACA 58.814 45.455 0.00 0.00 0.00 2.74
322 323 3.926058 TGCCCCCTTAATCTGAACTAC 57.074 47.619 0.00 0.00 0.00 2.73
323 324 3.785887 ACATGCCCCCTTAATCTGAACTA 59.214 43.478 0.00 0.00 0.00 2.24
324 325 2.582636 ACATGCCCCCTTAATCTGAACT 59.417 45.455 0.00 0.00 0.00 3.01
325 326 3.018423 ACATGCCCCCTTAATCTGAAC 57.982 47.619 0.00 0.00 0.00 3.18
326 327 4.871871 TTACATGCCCCCTTAATCTGAA 57.128 40.909 0.00 0.00 0.00 3.02
327 328 4.229582 ACTTTACATGCCCCCTTAATCTGA 59.770 41.667 0.00 0.00 0.00 3.27
328 329 4.536765 ACTTTACATGCCCCCTTAATCTG 58.463 43.478 0.00 0.00 0.00 2.90
329 330 4.881157 ACTTTACATGCCCCCTTAATCT 57.119 40.909 0.00 0.00 0.00 2.40
330 331 5.070685 CCTACTTTACATGCCCCCTTAATC 58.929 45.833 0.00 0.00 0.00 1.75
331 332 4.141018 CCCTACTTTACATGCCCCCTTAAT 60.141 45.833 0.00 0.00 0.00 1.40
332 333 3.203487 CCCTACTTTACATGCCCCCTTAA 59.797 47.826 0.00 0.00 0.00 1.85
333 334 2.781174 CCCTACTTTACATGCCCCCTTA 59.219 50.000 0.00 0.00 0.00 2.69
334 335 1.569072 CCCTACTTTACATGCCCCCTT 59.431 52.381 0.00 0.00 0.00 3.95
335 336 1.222567 CCCTACTTTACATGCCCCCT 58.777 55.000 0.00 0.00 0.00 4.79
336 337 0.924090 ACCCTACTTTACATGCCCCC 59.076 55.000 0.00 0.00 0.00 5.40
337 338 1.844497 AGACCCTACTTTACATGCCCC 59.156 52.381 0.00 0.00 0.00 5.80
338 339 4.765813 TTAGACCCTACTTTACATGCCC 57.234 45.455 0.00 0.00 0.00 5.36
396 397 9.664332 GACATTCAGCCTCACATCTTAATATAT 57.336 33.333 0.00 0.00 0.00 0.86
397 398 8.650490 TGACATTCAGCCTCACATCTTAATATA 58.350 33.333 0.00 0.00 0.00 0.86
398 399 7.512130 TGACATTCAGCCTCACATCTTAATAT 58.488 34.615 0.00 0.00 0.00 1.28
399 400 6.888105 TGACATTCAGCCTCACATCTTAATA 58.112 36.000 0.00 0.00 0.00 0.98
400 401 5.748402 TGACATTCAGCCTCACATCTTAAT 58.252 37.500 0.00 0.00 0.00 1.40
401 402 5.164620 TGACATTCAGCCTCACATCTTAA 57.835 39.130 0.00 0.00 0.00 1.85
402 403 4.824479 TGACATTCAGCCTCACATCTTA 57.176 40.909 0.00 0.00 0.00 2.10
403 404 3.708403 TGACATTCAGCCTCACATCTT 57.292 42.857 0.00 0.00 0.00 2.40
404 405 3.008813 AGTTGACATTCAGCCTCACATCT 59.991 43.478 0.00 0.00 0.00 2.90
405 406 3.341823 AGTTGACATTCAGCCTCACATC 58.658 45.455 0.00 0.00 0.00 3.06
406 407 3.430042 AGTTGACATTCAGCCTCACAT 57.570 42.857 0.00 0.00 0.00 3.21
407 408 2.936919 AGTTGACATTCAGCCTCACA 57.063 45.000 0.00 0.00 0.00 3.58
408 409 3.003480 GGTAGTTGACATTCAGCCTCAC 58.997 50.000 0.00 0.00 0.00 3.51
409 410 2.027192 GGGTAGTTGACATTCAGCCTCA 60.027 50.000 0.00 0.00 0.00 3.86
410 411 2.027192 TGGGTAGTTGACATTCAGCCTC 60.027 50.000 0.00 0.00 0.00 4.70
411 412 1.985159 TGGGTAGTTGACATTCAGCCT 59.015 47.619 0.00 0.00 0.00 4.58
412 413 2.084546 GTGGGTAGTTGACATTCAGCC 58.915 52.381 0.00 0.00 0.00 4.85
413 414 2.084546 GGTGGGTAGTTGACATTCAGC 58.915 52.381 0.00 0.00 0.00 4.26
414 415 2.039746 TGGGTGGGTAGTTGACATTCAG 59.960 50.000 0.00 0.00 0.00 3.02
415 416 2.058705 TGGGTGGGTAGTTGACATTCA 58.941 47.619 0.00 0.00 0.00 2.57
416 417 2.871096 TGGGTGGGTAGTTGACATTC 57.129 50.000 0.00 0.00 0.00 2.67
417 418 3.603965 TTTGGGTGGGTAGTTGACATT 57.396 42.857 0.00 0.00 0.00 2.71
418 419 3.603965 TTTTGGGTGGGTAGTTGACAT 57.396 42.857 0.00 0.00 0.00 3.06
419 420 3.025262 GTTTTTGGGTGGGTAGTTGACA 58.975 45.455 0.00 0.00 0.00 3.58
420 421 2.363038 GGTTTTTGGGTGGGTAGTTGAC 59.637 50.000 0.00 0.00 0.00 3.18
421 422 2.245287 AGGTTTTTGGGTGGGTAGTTGA 59.755 45.455 0.00 0.00 0.00 3.18
422 423 2.673258 AGGTTTTTGGGTGGGTAGTTG 58.327 47.619 0.00 0.00 0.00 3.16
423 424 4.539596 TTAGGTTTTTGGGTGGGTAGTT 57.460 40.909 0.00 0.00 0.00 2.24
424 425 4.217510 GTTTAGGTTTTTGGGTGGGTAGT 58.782 43.478 0.00 0.00 0.00 2.73
425 426 3.575256 GGTTTAGGTTTTTGGGTGGGTAG 59.425 47.826 0.00 0.00 0.00 3.18
426 427 3.574749 GGTTTAGGTTTTTGGGTGGGTA 58.425 45.455 0.00 0.00 0.00 3.69
427 428 2.400573 GGTTTAGGTTTTTGGGTGGGT 58.599 47.619 0.00 0.00 0.00 4.51
428 429 1.695242 GGGTTTAGGTTTTTGGGTGGG 59.305 52.381 0.00 0.00 0.00 4.61
429 430 2.367241 CAGGGTTTAGGTTTTTGGGTGG 59.633 50.000 0.00 0.00 0.00 4.61
430 431 3.035363 ACAGGGTTTAGGTTTTTGGGTG 58.965 45.455 0.00 0.00 0.00 4.61
431 432 3.035363 CACAGGGTTTAGGTTTTTGGGT 58.965 45.455 0.00 0.00 0.00 4.51
432 433 3.035363 ACACAGGGTTTAGGTTTTTGGG 58.965 45.455 0.00 0.00 0.00 4.12
433 434 4.746535 AACACAGGGTTTAGGTTTTTGG 57.253 40.909 0.00 0.00 35.82 3.28
442 443 8.757363 AACGGAGAGTTGAAACACAGGGTTTA 62.757 42.308 0.00 0.00 43.83 2.01
444 445 2.745152 CGGAGAGTTGAAACACAGGGTT 60.745 50.000 0.00 0.00 42.98 4.11
445 446 1.202651 CGGAGAGTTGAAACACAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
446 447 1.202651 ACGGAGAGTTGAAACACAGGG 60.203 52.381 0.00 0.00 0.00 4.45
447 448 2.240493 ACGGAGAGTTGAAACACAGG 57.760 50.000 0.00 0.00 0.00 4.00
448 449 2.544267 GGAACGGAGAGTTGAAACACAG 59.456 50.000 0.00 0.00 44.35 3.66
449 450 2.557317 GGAACGGAGAGTTGAAACACA 58.443 47.619 0.00 0.00 44.35 3.72
450 451 1.871676 GGGAACGGAGAGTTGAAACAC 59.128 52.381 0.00 0.00 44.35 3.32
451 452 1.766496 AGGGAACGGAGAGTTGAAACA 59.234 47.619 0.00 0.00 44.35 2.83
452 453 2.143925 CAGGGAACGGAGAGTTGAAAC 58.856 52.381 0.00 0.00 44.35 2.78
453 454 1.542547 GCAGGGAACGGAGAGTTGAAA 60.543 52.381 0.00 0.00 44.35 2.69
454 455 0.034896 GCAGGGAACGGAGAGTTGAA 59.965 55.000 0.00 0.00 44.35 2.69
455 456 1.671742 GCAGGGAACGGAGAGTTGA 59.328 57.895 0.00 0.00 44.35 3.18
456 457 1.376037 GGCAGGGAACGGAGAGTTG 60.376 63.158 0.00 0.00 44.35 3.16
458 459 1.613630 ATGGCAGGGAACGGAGAGT 60.614 57.895 0.00 0.00 0.00 3.24
459 460 1.144936 GATGGCAGGGAACGGAGAG 59.855 63.158 0.00 0.00 0.00 3.20
460 461 2.367202 GGATGGCAGGGAACGGAGA 61.367 63.158 0.00 0.00 0.00 3.71
465 466 0.464554 GCAGTAGGATGGCAGGGAAC 60.465 60.000 0.00 0.00 0.00 3.62
484 485 4.201783 CGTACCCCTGCTTTTTAATCGAAG 60.202 45.833 0.00 0.00 0.00 3.79
500 501 0.672711 GGTTTCTGCAGACGTACCCC 60.673 60.000 18.03 6.34 0.00 4.95
504 505 1.547372 GTAGGGGTTTCTGCAGACGTA 59.453 52.381 18.03 8.11 0.00 3.57
527 528 1.650363 GACGAAAACAACCGTGGGG 59.350 57.895 0.00 0.00 39.30 4.96
569 570 2.922335 GCGTGAGATTTTTGCCTTGTCC 60.922 50.000 0.00 0.00 0.00 4.02
575 576 2.485814 AGAGAAGCGTGAGATTTTTGCC 59.514 45.455 0.00 0.00 41.48 4.52
724 728 4.778143 ACAGGGACGGCGGCATTC 62.778 66.667 17.61 2.98 0.00 2.67
795 799 5.179368 CGTATATGGTTTGGATTGTAGCAGG 59.821 44.000 0.00 0.00 0.00 4.85
821 825 3.050703 GCACGCTGCTACAGTATGT 57.949 52.632 0.00 0.00 43.84 2.29
822 826 0.647410 GTGCACGCTGCTACAGTATG 59.353 55.000 0.00 0.00 45.31 2.39
888 898 5.245301 GGAGCCTTTTTATAAAAGTGGGTGT 59.755 40.000 26.75 15.65 35.65 4.16
994 1004 2.042162 ACCTCTCCATTGGCATCTTGTT 59.958 45.455 0.00 0.00 0.00 2.83
1263 1298 0.250513 AGAAAGGCTTGTAGGAGGCG 59.749 55.000 0.00 0.00 45.99 5.52
1386 1421 1.084370 CGACCAATGCGGAGAAGGAC 61.084 60.000 0.00 0.00 38.63 3.85
1452 1487 4.441695 TTCCTCTGCAGCTCCGCG 62.442 66.667 9.47 0.00 33.35 6.46
1642 1677 1.357258 CTAGCTCAGCTGCACAACGG 61.357 60.000 10.31 0.00 40.10 4.44
1643 1678 0.668706 ACTAGCTCAGCTGCACAACG 60.669 55.000 10.31 0.00 40.10 4.10
1689 1729 3.858503 GCACAAGGGCAAAGAAGATCAAC 60.859 47.826 0.00 0.00 0.00 3.18
1708 1748 4.918810 TGAAAGAAAAAGGAGGAAGCAC 57.081 40.909 0.00 0.00 0.00 4.40
1800 1845 0.813610 CAACAAGCAGGACACCACGA 60.814 55.000 0.00 0.00 0.00 4.35
1801 1846 1.648720 CAACAAGCAGGACACCACG 59.351 57.895 0.00 0.00 0.00 4.94
1802 1847 2.032981 CCAACAAGCAGGACACCAC 58.967 57.895 0.00 0.00 0.00 4.16
1812 1857 2.904866 TGTCGGTGGCCAACAAGC 60.905 61.111 23.36 10.49 0.00 4.01
2072 2121 6.542574 TGTTCTACGATTTTCGGCTAAAAA 57.457 33.333 0.79 0.00 45.59 1.94
2076 2125 5.640357 ACAATTGTTCTACGATTTTCGGCTA 59.360 36.000 4.92 0.00 45.59 3.93
2139 2188 6.490534 GCTTCAGCCTTGATTATTCTGTAAC 58.509 40.000 0.00 0.00 32.27 2.50
2168 2217 2.109229 ATGTCAGGAGGGGATAGGTG 57.891 55.000 0.00 0.00 0.00 4.00
2177 2226 1.278985 TGGCACAGTTATGTCAGGAGG 59.721 52.381 0.00 0.00 37.65 4.30
2195 2244 4.520111 TGGTGTTTCATCTCAAGAACATGG 59.480 41.667 0.00 0.00 0.00 3.66
2219 2268 4.167268 CAAGTGTACTAGCGAACTTCCTC 58.833 47.826 0.00 0.00 30.59 3.71
2238 2289 5.874810 TGTACTAGCATTTCAGCTAACCAAG 59.125 40.000 0.00 0.00 45.69 3.61
2329 2387 4.123506 GAGAACGAGAATCCATTCCTTCC 58.876 47.826 0.00 0.00 37.51 3.46
2413 2471 1.078143 GAGAAATCCCACAGCGCCT 60.078 57.895 2.29 0.00 0.00 5.52
2452 2510 4.633980 GCACTTGCAGGAAAACGG 57.366 55.556 1.40 0.00 41.59 4.44
2471 2529 2.228822 CTGGAATTGGGTTCGTTTCAGG 59.771 50.000 0.00 0.00 37.73 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.