Multiple sequence alignment - TraesCS6A01G187500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G187500 chr6A 100.000 3424 0 0 1 3424 223589100 223585677 0 6324
1 TraesCS6A01G187500 chr4B 97.798 2861 45 4 579 3424 661152349 661149492 0 4918
2 TraesCS6A01G187500 chr4B 97.751 2846 23 6 579 3424 621762622 621759818 0 4863
3 TraesCS6A01G187500 chr5A 97.591 2864 25 4 579 3424 44279440 44276603 0 4867
4 TraesCS6A01G187500 chr5A 97.106 2868 35 23 579 3424 547393657 547396498 0 4793
5 TraesCS6A01G187500 chr7A 97.394 2878 30 10 565 3424 13133470 13130620 0 4857
6 TraesCS6A01G187500 chr7A 97.346 2864 32 14 579 3424 707670450 707673287 0 4828
7 TraesCS6A01G187500 chr2A 97.481 2858 34 2 579 3424 734935070 734932239 0 4844
8 TraesCS6A01G187500 chr2A 96.717 2863 49 13 578 3424 2768050 2765217 0 4724
9 TraesCS6A01G187500 chrUn 97.382 2865 30 12 579 3424 8808795 8805957 0 4833
10 TraesCS6A01G187500 chr7B 97.277 2864 31 7 579 3424 714452956 714450122 0 4813
11 TraesCS6A01G187500 chr7B 98.371 1842 12 7 1601 3424 714530597 714528756 0 3219
12 TraesCS6A01G187500 chr7B 95.740 1878 25 12 1549 3424 214067508 214065684 0 2974
13 TraesCS6A01G187500 chr7B 98.977 1075 11 0 579 1653 214068530 214067456 0 1925
14 TraesCS6A01G187500 chr3B 97.277 2864 28 5 579 3424 60270841 60273672 0 4811


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G187500 chr6A 223585677 223589100 3423 True 6324.0 6324 100.0000 1 3424 1 chr6A.!!$R1 3423
1 TraesCS6A01G187500 chr4B 661149492 661152349 2857 True 4918.0 4918 97.7980 579 3424 1 chr4B.!!$R2 2845
2 TraesCS6A01G187500 chr4B 621759818 621762622 2804 True 4863.0 4863 97.7510 579 3424 1 chr4B.!!$R1 2845
3 TraesCS6A01G187500 chr5A 44276603 44279440 2837 True 4867.0 4867 97.5910 579 3424 1 chr5A.!!$R1 2845
4 TraesCS6A01G187500 chr5A 547393657 547396498 2841 False 4793.0 4793 97.1060 579 3424 1 chr5A.!!$F1 2845
5 TraesCS6A01G187500 chr7A 13130620 13133470 2850 True 4857.0 4857 97.3940 565 3424 1 chr7A.!!$R1 2859
6 TraesCS6A01G187500 chr7A 707670450 707673287 2837 False 4828.0 4828 97.3460 579 3424 1 chr7A.!!$F1 2845
7 TraesCS6A01G187500 chr2A 734932239 734935070 2831 True 4844.0 4844 97.4810 579 3424 1 chr2A.!!$R2 2845
8 TraesCS6A01G187500 chr2A 2765217 2768050 2833 True 4724.0 4724 96.7170 578 3424 1 chr2A.!!$R1 2846
9 TraesCS6A01G187500 chrUn 8805957 8808795 2838 True 4833.0 4833 97.3820 579 3424 1 chrUn.!!$R1 2845
10 TraesCS6A01G187500 chr7B 714450122 714452956 2834 True 4813.0 4813 97.2770 579 3424 1 chr7B.!!$R1 2845
11 TraesCS6A01G187500 chr7B 714528756 714530597 1841 True 3219.0 3219 98.3710 1601 3424 1 chr7B.!!$R2 1823
12 TraesCS6A01G187500 chr7B 214065684 214068530 2846 True 2449.5 2974 97.3585 579 3424 2 chr7B.!!$R3 2845
13 TraesCS6A01G187500 chr3B 60270841 60273672 2831 False 4811.0 4811 97.2770 579 3424 1 chr3B.!!$F1 2845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.035439 GAGGGCGTCCATTTCAGGAA 60.035 55.0 9.71 0.0 39.92 3.36 F
472 473 0.101219 GGCGTCCATTTCAGGAATGC 59.899 55.0 0.00 0.0 43.11 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2378 2520 2.617532 CCTCTCCAGCTTAGCTTTGCTT 60.618 50.0 3.00 0.0 40.44 3.91 R
2896 3039 5.763698 GCAGTAAGTTCCTAGGTTCAGTTTT 59.236 40.0 9.08 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.374071 GGTGTACACAATATTCCCCTAAGG 58.626 45.833 26.51 0.00 0.00 2.69
24 25 5.131475 GGTGTACACAATATTCCCCTAAGGA 59.869 44.000 26.51 0.00 45.68 3.36
35 36 4.569719 TCCCCTAAGGAAAACAGACATC 57.430 45.455 0.00 0.00 43.78 3.06
36 37 3.913799 TCCCCTAAGGAAAACAGACATCA 59.086 43.478 0.00 0.00 43.78 3.07
37 38 4.540099 TCCCCTAAGGAAAACAGACATCAT 59.460 41.667 0.00 0.00 43.78 2.45
38 39 5.729229 TCCCCTAAGGAAAACAGACATCATA 59.271 40.000 0.00 0.00 43.78 2.15
39 40 6.389869 TCCCCTAAGGAAAACAGACATCATAT 59.610 38.462 0.00 0.00 43.78 1.78
40 41 7.570982 TCCCCTAAGGAAAACAGACATCATATA 59.429 37.037 0.00 0.00 43.78 0.86
41 42 8.386264 CCCCTAAGGAAAACAGACATCATATAT 58.614 37.037 0.00 0.00 38.24 0.86
42 43 9.224267 CCCTAAGGAAAACAGACATCATATATG 57.776 37.037 6.36 6.36 33.47 1.78
43 44 9.784531 CCTAAGGAAAACAGACATCATATATGT 57.215 33.333 12.42 0.00 34.52 2.29
47 48 9.911788 AGGAAAACAGACATCATATATGTTTCT 57.088 29.630 12.42 9.44 41.77 2.52
68 69 9.745323 GTTTCTAATCTTTTATTTTGCACATGC 57.255 29.630 0.00 0.00 42.50 4.06
78 79 4.950744 GCACATGCACACTTGTCC 57.049 55.556 0.00 0.00 41.59 4.02
79 80 2.334307 GCACATGCACACTTGTCCT 58.666 52.632 0.00 0.00 41.59 3.85
80 81 1.522668 GCACATGCACACTTGTCCTA 58.477 50.000 0.00 0.00 41.59 2.94
81 82 2.086869 GCACATGCACACTTGTCCTAT 58.913 47.619 0.00 0.00 41.59 2.57
82 83 2.489329 GCACATGCACACTTGTCCTATT 59.511 45.455 0.00 0.00 41.59 1.73
83 84 3.057315 GCACATGCACACTTGTCCTATTT 60.057 43.478 0.00 0.00 41.59 1.40
84 85 4.559300 GCACATGCACACTTGTCCTATTTT 60.559 41.667 0.00 0.00 41.59 1.82
85 86 5.156355 CACATGCACACTTGTCCTATTTTC 58.844 41.667 0.00 0.00 32.19 2.29
86 87 4.826733 ACATGCACACTTGTCCTATTTTCA 59.173 37.500 0.00 0.00 28.51 2.69
87 88 5.477984 ACATGCACACTTGTCCTATTTTCAT 59.522 36.000 0.00 0.00 28.51 2.57
88 89 6.015180 ACATGCACACTTGTCCTATTTTCATT 60.015 34.615 0.00 0.00 28.51 2.57
89 90 6.403866 TGCACACTTGTCCTATTTTCATTT 57.596 33.333 0.00 0.00 0.00 2.32
90 91 6.815089 TGCACACTTGTCCTATTTTCATTTT 58.185 32.000 0.00 0.00 0.00 1.82
91 92 6.700960 TGCACACTTGTCCTATTTTCATTTTG 59.299 34.615 0.00 0.00 0.00 2.44
92 93 6.346838 GCACACTTGTCCTATTTTCATTTTGC 60.347 38.462 0.00 0.00 0.00 3.68
93 94 6.700960 CACACTTGTCCTATTTTCATTTTGCA 59.299 34.615 0.00 0.00 0.00 4.08
94 95 6.701400 ACACTTGTCCTATTTTCATTTTGCAC 59.299 34.615 0.00 0.00 0.00 4.57
95 96 6.925165 CACTTGTCCTATTTTCATTTTGCACT 59.075 34.615 0.00 0.00 0.00 4.40
96 97 7.115378 CACTTGTCCTATTTTCATTTTGCACTC 59.885 37.037 0.00 0.00 0.00 3.51
97 98 6.647334 TGTCCTATTTTCATTTTGCACTCA 57.353 33.333 0.00 0.00 0.00 3.41
98 99 7.048629 TGTCCTATTTTCATTTTGCACTCAA 57.951 32.000 0.00 0.00 0.00 3.02
99 100 7.495901 TGTCCTATTTTCATTTTGCACTCAAA 58.504 30.769 0.00 0.00 40.17 2.69
100 101 7.652909 TGTCCTATTTTCATTTTGCACTCAAAG 59.347 33.333 0.00 0.00 42.50 2.77
101 102 7.653311 GTCCTATTTTCATTTTGCACTCAAAGT 59.347 33.333 0.00 0.00 42.50 2.66
102 103 7.867403 TCCTATTTTCATTTTGCACTCAAAGTC 59.133 33.333 0.00 0.00 42.50 3.01
103 104 7.869429 CCTATTTTCATTTTGCACTCAAAGTCT 59.131 33.333 0.00 0.00 42.50 3.24
104 105 9.252962 CTATTTTCATTTTGCACTCAAAGTCTT 57.747 29.630 0.00 0.00 42.50 3.01
105 106 6.890663 TTTCATTTTGCACTCAAAGTCTTG 57.109 33.333 0.00 0.00 42.50 3.02
106 107 4.362279 TCATTTTGCACTCAAAGTCTTGC 58.638 39.130 0.00 0.00 42.50 4.01
107 108 3.865011 TTTTGCACTCAAAGTCTTGCA 57.135 38.095 0.00 0.00 42.50 4.08
111 112 2.754552 TGCACTCAAAGTCTTGCAAAGT 59.245 40.909 0.00 0.00 46.34 2.66
112 113 3.944650 TGCACTCAAAGTCTTGCAAAGTA 59.055 39.130 0.00 0.00 46.34 2.24
113 114 4.035558 TGCACTCAAAGTCTTGCAAAGTAG 59.964 41.667 0.00 0.00 46.34 2.57
114 115 4.273480 GCACTCAAAGTCTTGCAAAGTAGA 59.727 41.667 0.00 0.00 46.34 2.59
115 116 5.049129 GCACTCAAAGTCTTGCAAAGTAGAT 60.049 40.000 0.00 0.00 46.34 1.98
116 117 6.147821 GCACTCAAAGTCTTGCAAAGTAGATA 59.852 38.462 0.00 0.00 46.34 1.98
117 118 7.148340 GCACTCAAAGTCTTGCAAAGTAGATAT 60.148 37.037 0.00 0.00 46.34 1.63
118 119 8.173775 CACTCAAAGTCTTGCAAAGTAGATATG 58.826 37.037 0.00 0.00 46.34 1.78
119 120 7.076842 TCAAAGTCTTGCAAAGTAGATATGC 57.923 36.000 0.00 0.00 46.34 3.14
120 121 6.094048 TCAAAGTCTTGCAAAGTAGATATGCC 59.906 38.462 0.00 0.00 46.34 4.40
121 122 5.365021 AGTCTTGCAAAGTAGATATGCCT 57.635 39.130 0.00 0.00 46.34 4.75
122 123 6.485830 AGTCTTGCAAAGTAGATATGCCTA 57.514 37.500 0.00 0.00 46.34 3.93
123 124 7.072263 AGTCTTGCAAAGTAGATATGCCTAT 57.928 36.000 0.00 0.00 46.34 2.57
124 125 8.195165 AGTCTTGCAAAGTAGATATGCCTATA 57.805 34.615 0.00 0.00 46.34 1.31
125 126 8.310382 AGTCTTGCAAAGTAGATATGCCTATAG 58.690 37.037 0.00 0.00 46.34 1.31
126 127 7.547370 GTCTTGCAAAGTAGATATGCCTATAGG 59.453 40.741 15.01 15.01 46.34 2.57
127 128 6.299805 TGCAAAGTAGATATGCCTATAGGG 57.700 41.667 20.58 2.51 39.31 3.53
128 129 6.022958 TGCAAAGTAGATATGCCTATAGGGA 58.977 40.000 20.58 18.48 39.31 4.20
129 130 6.500400 TGCAAAGTAGATATGCCTATAGGGAA 59.500 38.462 17.80 7.29 39.60 3.97
130 131 7.182749 TGCAAAGTAGATATGCCTATAGGGAAT 59.817 37.037 17.80 11.64 39.60 3.01
131 132 7.713073 GCAAAGTAGATATGCCTATAGGGAATC 59.287 40.741 17.80 18.55 39.60 2.52
132 133 8.986991 CAAAGTAGATATGCCTATAGGGAATCT 58.013 37.037 25.98 25.98 39.60 2.40
133 134 8.776061 AAGTAGATATGCCTATAGGGAATCTC 57.224 38.462 26.26 19.11 39.60 2.75
134 135 7.302184 AGTAGATATGCCTATAGGGAATCTCC 58.698 42.308 26.26 20.27 39.60 3.71
135 136 6.110273 AGATATGCCTATAGGGAATCTCCA 57.890 41.667 17.80 6.28 39.60 3.86
136 137 6.515779 AGATATGCCTATAGGGAATCTCCAA 58.484 40.000 17.80 0.00 39.60 3.53
137 138 4.917906 ATGCCTATAGGGAATCTCCAAC 57.082 45.455 17.80 0.00 39.60 3.77
138 139 3.664320 TGCCTATAGGGAATCTCCAACA 58.336 45.455 20.58 2.80 38.64 3.33
139 140 4.044308 TGCCTATAGGGAATCTCCAACAA 58.956 43.478 20.58 0.00 38.64 2.83
140 141 4.665009 TGCCTATAGGGAATCTCCAACAAT 59.335 41.667 20.58 0.00 38.64 2.71
141 142 5.006386 GCCTATAGGGAATCTCCAACAATG 58.994 45.833 20.58 0.00 38.64 2.82
142 143 5.221925 GCCTATAGGGAATCTCCAACAATGA 60.222 44.000 20.58 0.00 38.64 2.57
143 144 6.234177 CCTATAGGGAATCTCCAACAATGAC 58.766 44.000 11.33 0.00 38.64 3.06
144 145 3.372440 AGGGAATCTCCAACAATGACC 57.628 47.619 0.00 0.00 38.64 4.02
145 146 2.024941 AGGGAATCTCCAACAATGACCC 60.025 50.000 0.00 0.00 38.64 4.46
146 147 2.379005 GGAATCTCCAACAATGACCCC 58.621 52.381 0.00 0.00 36.28 4.95
147 148 2.024941 GGAATCTCCAACAATGACCCCT 60.025 50.000 0.00 0.00 36.28 4.79
148 149 3.202151 GGAATCTCCAACAATGACCCCTA 59.798 47.826 0.00 0.00 36.28 3.53
149 150 3.933861 ATCTCCAACAATGACCCCTAC 57.066 47.619 0.00 0.00 0.00 3.18
150 151 2.915869 TCTCCAACAATGACCCCTACT 58.084 47.619 0.00 0.00 0.00 2.57
151 152 2.838202 TCTCCAACAATGACCCCTACTC 59.162 50.000 0.00 0.00 0.00 2.59
152 153 1.913419 TCCAACAATGACCCCTACTCC 59.087 52.381 0.00 0.00 0.00 3.85
153 154 1.406887 CCAACAATGACCCCTACTCCG 60.407 57.143 0.00 0.00 0.00 4.63
154 155 1.278127 CAACAATGACCCCTACTCCGT 59.722 52.381 0.00 0.00 0.00 4.69
155 156 1.192428 ACAATGACCCCTACTCCGTC 58.808 55.000 0.00 0.00 0.00 4.79
156 157 0.464452 CAATGACCCCTACTCCGTCC 59.536 60.000 0.00 0.00 0.00 4.79
157 158 0.338814 AATGACCCCTACTCCGTCCT 59.661 55.000 0.00 0.00 0.00 3.85
158 159 0.106116 ATGACCCCTACTCCGTCCTC 60.106 60.000 0.00 0.00 0.00 3.71
159 160 1.305623 GACCCCTACTCCGTCCTCA 59.694 63.158 0.00 0.00 0.00 3.86
160 161 0.324091 GACCCCTACTCCGTCCTCAA 60.324 60.000 0.00 0.00 0.00 3.02
161 162 0.115745 ACCCCTACTCCGTCCTCAAA 59.884 55.000 0.00 0.00 0.00 2.69
162 163 1.273666 ACCCCTACTCCGTCCTCAAAT 60.274 52.381 0.00 0.00 0.00 2.32
163 164 1.139058 CCCCTACTCCGTCCTCAAATG 59.861 57.143 0.00 0.00 0.00 2.32
164 165 1.831736 CCCTACTCCGTCCTCAAATGT 59.168 52.381 0.00 0.00 0.00 2.71
165 166 2.236395 CCCTACTCCGTCCTCAAATGTT 59.764 50.000 0.00 0.00 0.00 2.71
166 167 3.522553 CCTACTCCGTCCTCAAATGTTC 58.477 50.000 0.00 0.00 0.00 3.18
167 168 2.080286 ACTCCGTCCTCAAATGTTCG 57.920 50.000 0.00 0.00 0.00 3.95
168 169 1.337823 ACTCCGTCCTCAAATGTTCGG 60.338 52.381 0.00 0.00 39.40 4.30
169 170 0.970640 TCCGTCCTCAAATGTTCGGA 59.029 50.000 0.00 0.00 43.52 4.55
170 171 1.553248 TCCGTCCTCAAATGTTCGGAT 59.447 47.619 0.00 0.00 41.45 4.18
171 172 1.933853 CCGTCCTCAAATGTTCGGATC 59.066 52.381 0.00 0.00 40.29 3.36
172 173 1.588404 CGTCCTCAAATGTTCGGATCG 59.412 52.381 0.00 0.00 0.00 3.69
173 174 1.933853 GTCCTCAAATGTTCGGATCGG 59.066 52.381 0.00 0.00 0.00 4.18
174 175 1.828595 TCCTCAAATGTTCGGATCGGA 59.171 47.619 0.00 0.00 0.00 4.55
175 176 1.933853 CCTCAAATGTTCGGATCGGAC 59.066 52.381 1.88 0.00 35.69 4.79
176 177 1.588404 CTCAAATGTTCGGATCGGACG 59.412 52.381 1.88 0.00 38.33 4.79
177 178 0.650512 CAAATGTTCGGATCGGACGG 59.349 55.000 1.88 0.00 38.33 4.79
178 179 1.087771 AAATGTTCGGATCGGACGGC 61.088 55.000 1.88 0.00 38.33 5.68
179 180 2.918230 AATGTTCGGATCGGACGGCC 62.918 60.000 0.00 0.00 38.33 6.13
180 181 3.834799 GTTCGGATCGGACGGCCT 61.835 66.667 5.33 0.00 0.00 5.19
181 182 3.833645 TTCGGATCGGACGGCCTG 61.834 66.667 5.33 0.00 0.00 4.85
185 186 4.241555 GATCGGACGGCCTGGCAT 62.242 66.667 22.05 7.82 0.00 4.40
186 187 3.757248 GATCGGACGGCCTGGCATT 62.757 63.158 22.05 5.92 0.00 3.56
187 188 3.344137 ATCGGACGGCCTGGCATTT 62.344 57.895 22.05 2.97 0.00 2.32
188 189 2.837031 ATCGGACGGCCTGGCATTTT 62.837 55.000 22.05 0.08 0.00 1.82
189 190 2.635443 CGGACGGCCTGGCATTTTT 61.635 57.895 22.05 0.00 0.00 1.94
190 191 1.309499 CGGACGGCCTGGCATTTTTA 61.309 55.000 22.05 0.00 0.00 1.52
191 192 0.455815 GGACGGCCTGGCATTTTTAG 59.544 55.000 22.05 4.75 0.00 1.85
192 193 0.455815 GACGGCCTGGCATTTTTAGG 59.544 55.000 22.05 1.22 34.67 2.69
200 201 2.672961 GGCATTTTTAGGCCTCCAAC 57.327 50.000 9.68 0.00 46.74 3.77
201 202 1.899142 GGCATTTTTAGGCCTCCAACA 59.101 47.619 9.68 0.00 46.74 3.33
202 203 2.353704 GGCATTTTTAGGCCTCCAACAC 60.354 50.000 9.68 0.00 46.74 3.32
203 204 2.671070 GCATTTTTAGGCCTCCAACACG 60.671 50.000 9.68 0.00 0.00 4.49
204 205 1.611519 TTTTTAGGCCTCCAACACGG 58.388 50.000 9.68 0.00 0.00 4.94
205 206 0.766131 TTTTAGGCCTCCAACACGGA 59.234 50.000 9.68 0.00 43.61 4.69
206 207 0.035739 TTTAGGCCTCCAACACGGAC 59.964 55.000 9.68 0.00 39.64 4.79
207 208 2.162338 TTAGGCCTCCAACACGGACG 62.162 60.000 9.68 0.00 39.64 4.79
209 210 4.681978 GCCTCCAACACGGACGCT 62.682 66.667 0.00 0.00 41.27 5.07
210 211 2.030562 CCTCCAACACGGACGCTT 59.969 61.111 0.00 0.00 39.64 4.68
211 212 1.290955 CCTCCAACACGGACGCTTA 59.709 57.895 0.00 0.00 39.64 3.09
212 213 0.108329 CCTCCAACACGGACGCTTAT 60.108 55.000 0.00 0.00 39.64 1.73
213 214 1.674817 CCTCCAACACGGACGCTTATT 60.675 52.381 0.00 0.00 39.64 1.40
214 215 1.659098 CTCCAACACGGACGCTTATTC 59.341 52.381 0.00 0.00 39.64 1.75
215 216 1.001068 TCCAACACGGACGCTTATTCA 59.999 47.619 0.00 0.00 39.64 2.57
216 217 1.393539 CCAACACGGACGCTTATTCAG 59.606 52.381 0.00 0.00 36.56 3.02
217 218 1.076332 AACACGGACGCTTATTCAGC 58.924 50.000 0.00 0.00 46.31 4.26
230 231 6.006759 GCTTATTCAGCCCTCATTTATGTC 57.993 41.667 0.00 0.00 43.65 3.06
231 232 5.048434 GCTTATTCAGCCCTCATTTATGTCC 60.048 44.000 0.00 0.00 43.65 4.02
232 233 2.620251 TCAGCCCTCATTTATGTCCG 57.380 50.000 0.00 0.00 0.00 4.79
233 234 1.140852 TCAGCCCTCATTTATGTCCGG 59.859 52.381 0.00 0.00 0.00 5.14
234 235 1.140852 CAGCCCTCATTTATGTCCGGA 59.859 52.381 0.00 0.00 0.00 5.14
235 236 1.141053 AGCCCTCATTTATGTCCGGAC 59.859 52.381 28.17 28.17 0.00 4.79
236 237 1.134220 GCCCTCATTTATGTCCGGACA 60.134 52.381 37.79 37.79 46.44 4.02
237 238 2.838736 CCCTCATTTATGTCCGGACAG 58.161 52.381 37.98 25.53 45.48 3.51
238 239 2.485479 CCCTCATTTATGTCCGGACAGG 60.485 54.545 37.98 30.06 45.48 4.00
239 240 2.485479 CCTCATTTATGTCCGGACAGGG 60.485 54.545 37.98 25.21 45.48 4.45
240 241 1.488812 TCATTTATGTCCGGACAGGGG 59.511 52.381 37.98 25.17 45.48 4.79
241 242 1.211949 CATTTATGTCCGGACAGGGGT 59.788 52.381 37.98 25.54 45.48 4.95
242 243 0.616371 TTTATGTCCGGACAGGGGTG 59.384 55.000 37.98 0.00 45.48 4.61
243 244 0.252330 TTATGTCCGGACAGGGGTGA 60.252 55.000 37.98 18.59 45.48 4.02
244 245 0.974010 TATGTCCGGACAGGGGTGAC 60.974 60.000 37.98 10.28 45.48 3.67
245 246 2.603776 GTCCGGACAGGGGTGACT 60.604 66.667 29.75 0.00 41.52 3.41
246 247 1.304713 GTCCGGACAGGGGTGACTA 60.305 63.158 29.75 0.00 41.52 2.59
247 248 1.304713 TCCGGACAGGGGTGACTAC 60.305 63.158 0.00 0.00 41.52 2.73
248 249 1.305046 CCGGACAGGGGTGACTACT 60.305 63.158 0.00 0.00 35.97 2.57
249 250 1.321074 CCGGACAGGGGTGACTACTC 61.321 65.000 0.00 0.00 35.97 2.59
250 251 1.654954 CGGACAGGGGTGACTACTCG 61.655 65.000 0.00 0.00 0.00 4.18
251 252 1.321074 GGACAGGGGTGACTACTCGG 61.321 65.000 0.00 0.00 0.00 4.63
252 253 0.323178 GACAGGGGTGACTACTCGGA 60.323 60.000 0.00 0.00 0.00 4.55
253 254 0.113776 ACAGGGGTGACTACTCGGAA 59.886 55.000 0.00 0.00 0.00 4.30
254 255 1.273098 ACAGGGGTGACTACTCGGAAT 60.273 52.381 0.00 0.00 0.00 3.01
255 256 1.409427 CAGGGGTGACTACTCGGAATC 59.591 57.143 0.00 0.00 0.00 2.52
256 257 0.751452 GGGGTGACTACTCGGAATCC 59.249 60.000 0.00 0.00 0.00 3.01
257 258 0.751452 GGGTGACTACTCGGAATCCC 59.249 60.000 0.00 0.00 0.00 3.85
258 259 0.751452 GGTGACTACTCGGAATCCCC 59.249 60.000 0.00 0.00 0.00 4.81
259 260 1.688627 GGTGACTACTCGGAATCCCCT 60.689 57.143 0.00 0.00 0.00 4.79
260 261 1.409427 GTGACTACTCGGAATCCCCTG 59.591 57.143 0.00 0.00 0.00 4.45
261 262 1.006758 TGACTACTCGGAATCCCCTGT 59.993 52.381 0.00 0.00 0.00 4.00
262 263 2.108970 GACTACTCGGAATCCCCTGTT 58.891 52.381 0.00 0.00 0.00 3.16
263 264 1.831736 ACTACTCGGAATCCCCTGTTG 59.168 52.381 0.00 0.00 0.00 3.33
264 265 1.831736 CTACTCGGAATCCCCTGTTGT 59.168 52.381 0.00 0.00 0.00 3.32
265 266 1.946984 ACTCGGAATCCCCTGTTGTA 58.053 50.000 0.00 0.00 0.00 2.41
266 267 2.262637 ACTCGGAATCCCCTGTTGTAA 58.737 47.619 0.00 0.00 0.00 2.41
267 268 2.027469 ACTCGGAATCCCCTGTTGTAAC 60.027 50.000 0.00 0.00 0.00 2.50
268 269 1.979308 TCGGAATCCCCTGTTGTAACA 59.021 47.619 0.00 0.00 37.37 2.41
269 270 2.574369 TCGGAATCCCCTGTTGTAACAT 59.426 45.455 0.00 0.00 38.41 2.71
270 271 2.943033 CGGAATCCCCTGTTGTAACATC 59.057 50.000 0.00 0.00 38.41 3.06
271 272 3.621214 CGGAATCCCCTGTTGTAACATCA 60.621 47.826 0.00 0.00 38.41 3.07
272 273 4.340617 GGAATCCCCTGTTGTAACATCAA 58.659 43.478 0.00 0.00 38.41 2.57
273 274 4.770010 GGAATCCCCTGTTGTAACATCAAA 59.230 41.667 0.00 0.00 38.41 2.69
274 275 5.422012 GGAATCCCCTGTTGTAACATCAAAT 59.578 40.000 0.00 0.00 38.41 2.32
275 276 5.920193 ATCCCCTGTTGTAACATCAAATG 57.080 39.130 0.00 0.00 38.41 2.32
276 277 4.991776 TCCCCTGTTGTAACATCAAATGA 58.008 39.130 0.00 0.00 38.41 2.57
277 278 5.389520 TCCCCTGTTGTAACATCAAATGAA 58.610 37.500 0.00 0.00 38.41 2.57
278 279 5.476599 TCCCCTGTTGTAACATCAAATGAAG 59.523 40.000 0.00 0.00 38.41 3.02
279 280 5.336690 CCCCTGTTGTAACATCAAATGAAGG 60.337 44.000 0.00 0.00 38.41 3.46
280 281 5.336690 CCCTGTTGTAACATCAAATGAAGGG 60.337 44.000 0.00 0.00 38.41 3.95
281 282 5.476599 CCTGTTGTAACATCAAATGAAGGGA 59.523 40.000 0.00 0.00 38.41 4.20
282 283 6.349611 CCTGTTGTAACATCAAATGAAGGGAG 60.350 42.308 0.00 0.00 38.41 4.30
283 284 6.303054 TGTTGTAACATCAAATGAAGGGAGA 58.697 36.000 0.00 0.00 33.17 3.71
284 285 6.775142 TGTTGTAACATCAAATGAAGGGAGAA 59.225 34.615 0.00 0.00 33.17 2.87
285 286 7.286546 TGTTGTAACATCAAATGAAGGGAGAAA 59.713 33.333 0.00 0.00 33.17 2.52
286 287 8.306761 GTTGTAACATCAAATGAAGGGAGAAAT 58.693 33.333 0.00 0.00 0.00 2.17
287 288 8.055279 TGTAACATCAAATGAAGGGAGAAATC 57.945 34.615 0.00 0.00 0.00 2.17
288 289 5.824904 ACATCAAATGAAGGGAGAAATCG 57.175 39.130 0.00 0.00 0.00 3.34
289 290 4.641989 ACATCAAATGAAGGGAGAAATCGG 59.358 41.667 0.00 0.00 0.00 4.18
290 291 4.568072 TCAAATGAAGGGAGAAATCGGA 57.432 40.909 0.00 0.00 0.00 4.55
291 292 4.517285 TCAAATGAAGGGAGAAATCGGAG 58.483 43.478 0.00 0.00 0.00 4.63
292 293 4.225042 TCAAATGAAGGGAGAAATCGGAGA 59.775 41.667 0.00 0.00 45.75 3.71
293 294 4.414337 AATGAAGGGAGAAATCGGAGAG 57.586 45.455 0.00 0.00 43.63 3.20
294 295 2.821437 TGAAGGGAGAAATCGGAGAGT 58.179 47.619 0.00 0.00 43.63 3.24
303 304 2.839486 AATCGGAGAGTTTGCAGACA 57.161 45.000 10.36 0.00 43.63 3.41
304 305 2.086054 ATCGGAGAGTTTGCAGACAC 57.914 50.000 10.36 3.21 43.63 3.67
305 306 0.318699 TCGGAGAGTTTGCAGACACG 60.319 55.000 10.36 8.50 0.00 4.49
306 307 0.597637 CGGAGAGTTTGCAGACACGT 60.598 55.000 10.36 0.00 0.00 4.49
307 308 1.140816 GGAGAGTTTGCAGACACGTC 58.859 55.000 10.36 2.96 0.00 4.34
308 309 1.140816 GAGAGTTTGCAGACACGTCC 58.859 55.000 10.36 0.00 0.00 4.79
309 310 0.464036 AGAGTTTGCAGACACGTCCA 59.536 50.000 10.36 0.00 0.00 4.02
310 311 0.861837 GAGTTTGCAGACACGTCCAG 59.138 55.000 10.36 0.00 0.00 3.86
311 312 0.464036 AGTTTGCAGACACGTCCAGA 59.536 50.000 10.36 0.00 0.00 3.86
312 313 0.582005 GTTTGCAGACACGTCCAGAC 59.418 55.000 1.83 0.00 0.00 3.51
313 314 0.531974 TTTGCAGACACGTCCAGACC 60.532 55.000 0.00 0.00 0.00 3.85
314 315 2.048127 GCAGACACGTCCAGACCC 60.048 66.667 0.00 0.00 0.00 4.46
315 316 2.867855 GCAGACACGTCCAGACCCA 61.868 63.158 0.00 0.00 0.00 4.51
316 317 1.006102 CAGACACGTCCAGACCCAC 60.006 63.158 0.00 0.00 0.00 4.61
317 318 2.207924 AGACACGTCCAGACCCACC 61.208 63.158 0.00 0.00 0.00 4.61
318 319 3.236003 GACACGTCCAGACCCACCC 62.236 68.421 0.00 0.00 0.00 4.61
319 320 3.238497 CACGTCCAGACCCACCCA 61.238 66.667 0.00 0.00 0.00 4.51
320 321 2.446994 ACGTCCAGACCCACCCAA 60.447 61.111 0.00 0.00 0.00 4.12
321 322 2.073716 ACGTCCAGACCCACCCAAA 61.074 57.895 0.00 0.00 0.00 3.28
322 323 1.149627 CGTCCAGACCCACCCAAAA 59.850 57.895 0.00 0.00 0.00 2.44
323 324 0.466555 CGTCCAGACCCACCCAAAAA 60.467 55.000 0.00 0.00 0.00 1.94
324 325 1.328279 GTCCAGACCCACCCAAAAAG 58.672 55.000 0.00 0.00 0.00 2.27
325 326 0.469144 TCCAGACCCACCCAAAAAGC 60.469 55.000 0.00 0.00 0.00 3.51
326 327 1.471829 CCAGACCCACCCAAAAAGCC 61.472 60.000 0.00 0.00 0.00 4.35
327 328 0.758685 CAGACCCACCCAAAAAGCCA 60.759 55.000 0.00 0.00 0.00 4.75
328 329 0.190815 AGACCCACCCAAAAAGCCAT 59.809 50.000 0.00 0.00 0.00 4.40
329 330 0.608130 GACCCACCCAAAAAGCCATC 59.392 55.000 0.00 0.00 0.00 3.51
330 331 0.190815 ACCCACCCAAAAAGCCATCT 59.809 50.000 0.00 0.00 0.00 2.90
331 332 1.431243 ACCCACCCAAAAAGCCATCTA 59.569 47.619 0.00 0.00 0.00 1.98
332 333 2.102578 CCCACCCAAAAAGCCATCTAG 58.897 52.381 0.00 0.00 0.00 2.43
333 334 2.291540 CCCACCCAAAAAGCCATCTAGA 60.292 50.000 0.00 0.00 0.00 2.43
334 335 3.628257 CCCACCCAAAAAGCCATCTAGAT 60.628 47.826 0.00 0.00 0.00 1.98
335 336 3.633986 CCACCCAAAAAGCCATCTAGATC 59.366 47.826 1.03 0.00 0.00 2.75
336 337 3.633986 CACCCAAAAAGCCATCTAGATCC 59.366 47.826 1.03 0.00 0.00 3.36
337 338 3.269381 ACCCAAAAAGCCATCTAGATCCA 59.731 43.478 1.03 0.00 0.00 3.41
338 339 3.633986 CCCAAAAAGCCATCTAGATCCAC 59.366 47.826 1.03 0.00 0.00 4.02
339 340 3.313526 CCAAAAAGCCATCTAGATCCACG 59.686 47.826 1.03 0.00 0.00 4.94
340 341 3.914426 AAAAGCCATCTAGATCCACGT 57.086 42.857 1.03 0.00 0.00 4.49
341 342 2.898729 AAGCCATCTAGATCCACGTG 57.101 50.000 9.08 9.08 0.00 4.49
342 343 2.073252 AGCCATCTAGATCCACGTGA 57.927 50.000 19.30 3.36 0.00 4.35
343 344 2.388735 AGCCATCTAGATCCACGTGAA 58.611 47.619 19.30 0.00 0.00 3.18
344 345 2.766263 AGCCATCTAGATCCACGTGAAA 59.234 45.455 19.30 4.92 0.00 2.69
345 346 3.197766 AGCCATCTAGATCCACGTGAAAA 59.802 43.478 19.30 2.00 0.00 2.29
346 347 3.309954 GCCATCTAGATCCACGTGAAAAC 59.690 47.826 19.30 3.52 0.00 2.43
347 348 3.871594 CCATCTAGATCCACGTGAAAACC 59.128 47.826 19.30 1.17 0.00 3.27
348 349 4.383118 CCATCTAGATCCACGTGAAAACCT 60.383 45.833 19.30 8.90 0.00 3.50
349 350 4.451629 TCTAGATCCACGTGAAAACCTC 57.548 45.455 19.30 4.16 0.00 3.85
350 351 4.087182 TCTAGATCCACGTGAAAACCTCT 58.913 43.478 19.30 11.14 0.00 3.69
351 352 3.320673 AGATCCACGTGAAAACCTCTC 57.679 47.619 19.30 1.71 0.00 3.20
352 353 2.632996 AGATCCACGTGAAAACCTCTCA 59.367 45.455 19.30 0.00 0.00 3.27
353 354 2.234300 TCCACGTGAAAACCTCTCAC 57.766 50.000 19.30 0.00 39.89 3.51
354 355 1.760613 TCCACGTGAAAACCTCTCACT 59.239 47.619 19.30 0.00 40.90 3.41
355 356 2.135933 CCACGTGAAAACCTCTCACTC 58.864 52.381 19.30 0.00 40.90 3.51
356 357 2.135933 CACGTGAAAACCTCTCACTCC 58.864 52.381 10.90 0.00 40.90 3.85
357 358 1.760613 ACGTGAAAACCTCTCACTCCA 59.239 47.619 0.00 0.00 40.90 3.86
358 359 2.368875 ACGTGAAAACCTCTCACTCCAT 59.631 45.455 0.00 0.00 40.90 3.41
359 360 2.738846 CGTGAAAACCTCTCACTCCATG 59.261 50.000 1.88 0.00 40.90 3.66
360 361 3.077359 GTGAAAACCTCTCACTCCATGG 58.923 50.000 4.97 4.97 40.10 3.66
361 362 2.978978 TGAAAACCTCTCACTCCATGGA 59.021 45.455 15.27 15.27 0.00 3.41
362 363 3.244561 TGAAAACCTCTCACTCCATGGAC 60.245 47.826 11.44 0.00 0.00 4.02
363 364 2.030027 AACCTCTCACTCCATGGACA 57.970 50.000 11.44 0.00 0.00 4.02
364 365 2.030027 ACCTCTCACTCCATGGACAA 57.970 50.000 11.44 0.00 0.00 3.18
365 366 2.338809 ACCTCTCACTCCATGGACAAA 58.661 47.619 11.44 0.00 0.00 2.83
366 367 2.915604 ACCTCTCACTCCATGGACAAAT 59.084 45.455 11.44 0.00 0.00 2.32
367 368 4.104086 ACCTCTCACTCCATGGACAAATA 58.896 43.478 11.44 0.00 0.00 1.40
368 369 4.163078 ACCTCTCACTCCATGGACAAATAG 59.837 45.833 11.44 2.15 0.00 1.73
369 370 4.444022 CCTCTCACTCCATGGACAAATAGG 60.444 50.000 11.44 11.43 0.00 2.57
370 371 3.455910 TCTCACTCCATGGACAAATAGGG 59.544 47.826 11.44 0.55 0.00 3.53
371 372 3.455910 CTCACTCCATGGACAAATAGGGA 59.544 47.826 11.44 5.72 0.00 4.20
372 373 3.849574 TCACTCCATGGACAAATAGGGAA 59.150 43.478 11.44 0.00 0.00 3.97
373 374 4.290985 TCACTCCATGGACAAATAGGGAAA 59.709 41.667 11.44 0.00 0.00 3.13
374 375 5.016173 CACTCCATGGACAAATAGGGAAAA 58.984 41.667 11.44 0.00 0.00 2.29
375 376 5.126061 CACTCCATGGACAAATAGGGAAAAG 59.874 44.000 11.44 0.00 0.00 2.27
376 377 5.015178 ACTCCATGGACAAATAGGGAAAAGA 59.985 40.000 11.44 0.00 0.00 2.52
377 378 5.261216 TCCATGGACAAATAGGGAAAAGAC 58.739 41.667 11.44 0.00 0.00 3.01
378 379 5.016173 CCATGGACAAATAGGGAAAAGACA 58.984 41.667 5.56 0.00 0.00 3.41
379 380 5.126061 CCATGGACAAATAGGGAAAAGACAG 59.874 44.000 5.56 0.00 0.00 3.51
380 381 4.662278 TGGACAAATAGGGAAAAGACAGG 58.338 43.478 0.00 0.00 0.00 4.00
381 382 4.017126 GGACAAATAGGGAAAAGACAGGG 58.983 47.826 0.00 0.00 0.00 4.45
382 383 4.017126 GACAAATAGGGAAAAGACAGGGG 58.983 47.826 0.00 0.00 0.00 4.79
383 384 3.660669 ACAAATAGGGAAAAGACAGGGGA 59.339 43.478 0.00 0.00 0.00 4.81
384 385 4.017126 CAAATAGGGAAAAGACAGGGGAC 58.983 47.826 0.00 0.00 0.00 4.46
385 386 2.426431 TAGGGAAAAGACAGGGGACA 57.574 50.000 0.00 0.00 0.00 4.02
386 387 1.529744 AGGGAAAAGACAGGGGACAA 58.470 50.000 0.00 0.00 0.00 3.18
387 388 1.145119 AGGGAAAAGACAGGGGACAAC 59.855 52.381 0.00 0.00 0.00 3.32
388 389 1.235724 GGAAAAGACAGGGGACAACG 58.764 55.000 0.00 0.00 0.00 4.10
389 390 1.476291 GGAAAAGACAGGGGACAACGT 60.476 52.381 0.00 0.00 0.00 3.99
390 391 2.294979 GAAAAGACAGGGGACAACGTT 58.705 47.619 0.00 0.00 0.00 3.99
391 392 1.675552 AAAGACAGGGGACAACGTTG 58.324 50.000 26.20 26.20 0.00 4.10
392 393 0.179029 AAGACAGGGGACAACGTTGG 60.179 55.000 30.34 14.80 0.00 3.77
393 394 1.052124 AGACAGGGGACAACGTTGGA 61.052 55.000 30.34 0.00 0.00 3.53
394 395 0.036306 GACAGGGGACAACGTTGGAT 59.964 55.000 30.34 12.21 0.00 3.41
395 396 0.476771 ACAGGGGACAACGTTGGATT 59.523 50.000 30.34 11.44 0.00 3.01
396 397 0.881118 CAGGGGACAACGTTGGATTG 59.119 55.000 30.34 16.97 0.00 2.67
397 398 0.893727 AGGGGACAACGTTGGATTGC 60.894 55.000 30.34 15.71 0.00 3.56
398 399 1.584495 GGGACAACGTTGGATTGCC 59.416 57.895 30.34 20.49 0.00 4.52
399 400 0.893727 GGGACAACGTTGGATTGCCT 60.894 55.000 30.34 9.12 34.31 4.75
400 401 0.240945 GGACAACGTTGGATTGCCTG 59.759 55.000 30.34 4.85 34.31 4.85
401 402 1.234821 GACAACGTTGGATTGCCTGA 58.765 50.000 30.34 0.00 34.31 3.86
402 403 1.606668 GACAACGTTGGATTGCCTGAA 59.393 47.619 30.34 0.00 34.31 3.02
403 404 2.028130 ACAACGTTGGATTGCCTGAAA 58.972 42.857 30.34 0.00 34.31 2.69
404 405 2.428890 ACAACGTTGGATTGCCTGAAAA 59.571 40.909 30.34 0.00 34.31 2.29
405 406 3.118956 ACAACGTTGGATTGCCTGAAAAA 60.119 39.130 30.34 0.00 34.31 1.94
422 423 3.644966 AAAAATGAGGGTATCTGCGGA 57.355 42.857 0.00 0.00 0.00 5.54
423 424 2.622064 AAATGAGGGTATCTGCGGAC 57.378 50.000 0.00 0.00 0.00 4.79
424 425 1.496060 AATGAGGGTATCTGCGGACA 58.504 50.000 0.00 0.00 0.00 4.02
425 426 1.722034 ATGAGGGTATCTGCGGACAT 58.278 50.000 0.00 0.00 0.00 3.06
426 427 0.752658 TGAGGGTATCTGCGGACATG 59.247 55.000 0.00 0.00 0.00 3.21
427 428 0.753262 GAGGGTATCTGCGGACATGT 59.247 55.000 0.00 0.00 0.00 3.21
428 429 0.753262 AGGGTATCTGCGGACATGTC 59.247 55.000 17.91 17.91 0.00 3.06
429 430 0.249911 GGGTATCTGCGGACATGTCC 60.250 60.000 31.59 31.59 46.18 4.02
440 441 3.478394 CATGTCCGCACGTGTCCG 61.478 66.667 18.38 12.90 35.12 4.79
454 455 3.639538 CGTGTCCGTAGATATTTGAGGG 58.360 50.000 0.00 0.00 0.00 4.30
455 456 3.391049 GTGTCCGTAGATATTTGAGGGC 58.609 50.000 0.00 0.00 0.00 5.19
456 457 2.035449 TGTCCGTAGATATTTGAGGGCG 59.965 50.000 0.00 0.00 0.00 6.13
457 458 2.035576 GTCCGTAGATATTTGAGGGCGT 59.964 50.000 0.00 0.00 0.00 5.68
458 459 2.295349 TCCGTAGATATTTGAGGGCGTC 59.705 50.000 0.00 0.00 0.00 5.19
459 460 2.609737 CCGTAGATATTTGAGGGCGTCC 60.610 54.545 0.00 0.00 0.00 4.79
460 461 2.035449 CGTAGATATTTGAGGGCGTCCA 59.965 50.000 9.71 0.00 34.83 4.02
461 462 3.306088 CGTAGATATTTGAGGGCGTCCAT 60.306 47.826 9.71 0.00 34.83 3.41
462 463 3.864789 AGATATTTGAGGGCGTCCATT 57.135 42.857 9.71 0.00 34.83 3.16
463 464 4.170468 AGATATTTGAGGGCGTCCATTT 57.830 40.909 9.71 0.00 34.83 2.32
464 465 4.137543 AGATATTTGAGGGCGTCCATTTC 58.862 43.478 9.71 0.00 34.83 2.17
465 466 2.214376 ATTTGAGGGCGTCCATTTCA 57.786 45.000 9.71 0.00 34.83 2.69
466 467 1.533625 TTTGAGGGCGTCCATTTCAG 58.466 50.000 9.71 0.00 34.83 3.02
467 468 0.322456 TTGAGGGCGTCCATTTCAGG 60.322 55.000 9.71 0.00 34.83 3.86
468 469 1.198094 TGAGGGCGTCCATTTCAGGA 61.198 55.000 9.71 0.00 34.83 3.86
469 470 0.035439 GAGGGCGTCCATTTCAGGAA 60.035 55.000 9.71 0.00 39.92 3.36
470 471 0.625849 AGGGCGTCCATTTCAGGAAT 59.374 50.000 9.71 0.00 39.92 3.01
471 472 0.740737 GGGCGTCCATTTCAGGAATG 59.259 55.000 0.00 0.00 43.89 2.67
472 473 0.101219 GGCGTCCATTTCAGGAATGC 59.899 55.000 0.00 0.00 43.11 3.56
473 474 0.101219 GCGTCCATTTCAGGAATGCC 59.899 55.000 0.00 0.00 43.11 4.40
474 475 0.740737 CGTCCATTTCAGGAATGCCC 59.259 55.000 0.00 0.00 43.11 5.36
476 477 2.460669 GTCCATTTCAGGAATGCCCTT 58.539 47.619 0.00 0.00 44.85 3.95
477 478 2.167075 GTCCATTTCAGGAATGCCCTTG 59.833 50.000 0.00 0.00 44.85 3.61
478 479 1.483415 CCATTTCAGGAATGCCCTTGG 59.517 52.381 0.00 0.00 44.85 3.61
479 480 2.459644 CATTTCAGGAATGCCCTTGGA 58.540 47.619 0.00 0.00 44.85 3.53
480 481 2.220653 TTTCAGGAATGCCCTTGGAG 57.779 50.000 0.00 0.00 44.85 3.86
481 482 1.371467 TTCAGGAATGCCCTTGGAGA 58.629 50.000 0.00 0.00 44.85 3.71
482 483 1.600058 TCAGGAATGCCCTTGGAGAT 58.400 50.000 0.00 0.00 44.85 2.75
483 484 1.213678 TCAGGAATGCCCTTGGAGATG 59.786 52.381 0.00 0.00 44.85 2.90
484 485 0.554792 AGGAATGCCCTTGGAGATGG 59.445 55.000 0.00 0.00 44.85 3.51
485 486 1.111715 GGAATGCCCTTGGAGATGGC 61.112 60.000 0.00 0.00 45.56 4.40
486 487 1.075748 AATGCCCTTGGAGATGGCC 60.076 57.895 0.00 0.00 44.72 5.36
487 488 1.587522 AATGCCCTTGGAGATGGCCT 61.588 55.000 3.32 0.00 44.72 5.19
488 489 1.587522 ATGCCCTTGGAGATGGCCTT 61.588 55.000 3.32 0.00 44.72 4.35
489 490 0.918799 TGCCCTTGGAGATGGCCTTA 60.919 55.000 3.32 0.00 44.72 2.69
490 491 0.179006 GCCCTTGGAGATGGCCTTAG 60.179 60.000 3.32 0.00 39.30 2.18
491 492 0.475906 CCCTTGGAGATGGCCTTAGG 59.524 60.000 3.32 0.34 33.16 2.69
492 493 0.475906 CCTTGGAGATGGCCTTAGGG 59.524 60.000 3.32 0.00 31.13 3.53
505 506 2.711542 CCTTAGGGCAACTTCAATCGT 58.288 47.619 0.00 0.00 0.00 3.73
506 507 2.420022 CCTTAGGGCAACTTCAATCGTG 59.580 50.000 0.00 0.00 0.00 4.35
507 508 2.107950 TAGGGCAACTTCAATCGTGG 57.892 50.000 0.00 0.00 0.00 4.94
508 509 0.400213 AGGGCAACTTCAATCGTGGA 59.600 50.000 0.00 0.00 0.00 4.02
509 510 1.004745 AGGGCAACTTCAATCGTGGAT 59.995 47.619 0.00 0.00 0.00 3.41
510 511 1.401905 GGGCAACTTCAATCGTGGATC 59.598 52.381 0.00 0.00 0.00 3.36
511 512 2.083774 GGCAACTTCAATCGTGGATCA 58.916 47.619 0.00 0.00 0.00 2.92
512 513 2.159517 GGCAACTTCAATCGTGGATCAC 60.160 50.000 0.00 0.00 0.00 3.06
513 514 2.159517 GCAACTTCAATCGTGGATCACC 60.160 50.000 0.00 0.00 0.00 4.02
514 515 3.338249 CAACTTCAATCGTGGATCACCT 58.662 45.455 0.00 0.00 37.04 4.00
515 516 4.503910 CAACTTCAATCGTGGATCACCTA 58.496 43.478 0.00 0.00 37.04 3.08
516 517 5.118990 CAACTTCAATCGTGGATCACCTAT 58.881 41.667 0.00 0.00 37.04 2.57
517 518 5.359194 ACTTCAATCGTGGATCACCTATT 57.641 39.130 0.00 0.00 37.04 1.73
518 519 5.118990 ACTTCAATCGTGGATCACCTATTG 58.881 41.667 0.00 11.41 35.22 1.90
519 520 4.071961 TCAATCGTGGATCACCTATTGG 57.928 45.455 14.92 0.00 34.95 3.16
520 521 3.709141 TCAATCGTGGATCACCTATTGGA 59.291 43.478 0.00 0.00 34.95 3.53
521 522 3.753294 ATCGTGGATCACCTATTGGAC 57.247 47.619 0.00 0.00 37.04 4.02
522 523 2.462723 TCGTGGATCACCTATTGGACA 58.537 47.619 0.00 0.00 37.04 4.02
523 524 3.038280 TCGTGGATCACCTATTGGACAT 58.962 45.455 0.00 0.00 37.04 3.06
524 525 3.069586 TCGTGGATCACCTATTGGACATC 59.930 47.826 0.00 0.78 37.04 3.06
525 526 3.181466 CGTGGATCACCTATTGGACATCA 60.181 47.826 0.00 0.00 37.04 3.07
526 527 4.503817 CGTGGATCACCTATTGGACATCAT 60.504 45.833 0.00 0.00 37.04 2.45
527 528 4.999950 GTGGATCACCTATTGGACATCATC 59.000 45.833 0.00 0.00 37.04 2.92
528 529 4.659835 TGGATCACCTATTGGACATCATCA 59.340 41.667 0.00 0.00 37.04 3.07
529 530 5.132480 TGGATCACCTATTGGACATCATCAA 59.868 40.000 0.00 0.00 37.04 2.57
530 531 6.064060 GGATCACCTATTGGACATCATCAAA 58.936 40.000 0.00 0.00 37.04 2.69
531 532 6.718454 GGATCACCTATTGGACATCATCAAAT 59.282 38.462 0.00 0.00 35.02 2.32
532 533 6.947644 TCACCTATTGGACATCATCAAATG 57.052 37.500 0.00 0.00 32.74 2.32
533 534 6.425735 TCACCTATTGGACATCATCAAATGT 58.574 36.000 0.00 0.00 42.49 2.71
549 550 1.907739 TGTCTATGGACAGCTGGCC 59.092 57.895 33.16 33.16 46.19 5.36
567 568 2.516225 GGGTGCCGGCCATTAGTC 60.516 66.667 26.77 5.09 0.00 2.59
575 576 1.405105 CCGGCCATTAGTCACCAAATG 59.595 52.381 2.24 0.00 33.72 2.32
576 577 2.091541 CGGCCATTAGTCACCAAATGT 58.908 47.619 2.24 0.00 32.34 2.71
1106 1108 4.172807 TGGTGGAACAGAGTTAGGGTTAT 58.827 43.478 0.00 0.00 41.80 1.89
1624 1730 8.044908 AGTAGGTGTTAACTGAAAAAGAACAGA 58.955 33.333 7.22 0.00 37.54 3.41
1625 1731 7.321745 AGGTGTTAACTGAAAAAGAACAGAG 57.678 36.000 7.22 0.00 37.54 3.35
1626 1732 6.884836 AGGTGTTAACTGAAAAAGAACAGAGT 59.115 34.615 7.22 0.00 37.54 3.24
1627 1733 8.044908 AGGTGTTAACTGAAAAAGAACAGAGTA 58.955 33.333 7.22 0.00 37.54 2.59
1628 1734 8.336080 GGTGTTAACTGAAAAAGAACAGAGTAG 58.664 37.037 7.22 0.00 37.54 2.57
1629 1735 8.336080 GTGTTAACTGAAAAAGAACAGAGTAGG 58.664 37.037 7.22 0.00 37.54 3.18
1630 1736 8.044908 TGTTAACTGAAAAAGAACAGAGTAGGT 58.955 33.333 7.22 0.00 37.54 3.08
1631 1737 6.927294 AACTGAAAAAGAACAGAGTAGGTG 57.073 37.500 0.00 0.00 37.54 4.00
1632 1738 5.990668 ACTGAAAAAGAACAGAGTAGGTGT 58.009 37.500 0.00 0.00 37.54 4.16
1633 1739 6.415573 ACTGAAAAAGAACAGAGTAGGTGTT 58.584 36.000 0.00 0.00 40.89 3.32
1634 1740 7.562135 ACTGAAAAAGAACAGAGTAGGTGTTA 58.438 34.615 0.00 0.00 38.26 2.41
1635 1741 8.044908 ACTGAAAAAGAACAGAGTAGGTGTTAA 58.955 33.333 0.00 0.00 38.26 2.01
1636 1742 8.205131 TGAAAAAGAACAGAGTAGGTGTTAAC 57.795 34.615 0.00 0.00 38.26 2.01
1637 1743 8.044908 TGAAAAAGAACAGAGTAGGTGTTAACT 58.955 33.333 7.22 0.00 38.26 2.24
1638 1744 7.787725 AAAAGAACAGAGTAGGTGTTAACTG 57.212 36.000 7.22 0.00 38.26 3.16
1639 1745 6.726490 AAGAACAGAGTAGGTGTTAACTGA 57.274 37.500 7.22 0.00 38.26 3.41
1640 1746 6.726490 AGAACAGAGTAGGTGTTAACTGAA 57.274 37.500 7.22 0.00 38.26 3.02
1641 1747 7.120923 AGAACAGAGTAGGTGTTAACTGAAA 57.879 36.000 7.22 0.00 38.26 2.69
1642 1748 7.562135 AGAACAGAGTAGGTGTTAACTGAAAA 58.438 34.615 7.22 0.00 38.26 2.29
1643 1749 8.044908 AGAACAGAGTAGGTGTTAACTGAAAAA 58.955 33.333 7.22 0.00 38.26 1.94
1644 1750 7.787725 ACAGAGTAGGTGTTAACTGAAAAAG 57.212 36.000 7.22 0.00 0.00 2.27
1645 1751 7.562135 ACAGAGTAGGTGTTAACTGAAAAAGA 58.438 34.615 7.22 0.00 0.00 2.52
1646 1752 8.044908 ACAGAGTAGGTGTTAACTGAAAAAGAA 58.955 33.333 7.22 0.00 0.00 2.52
1647 1753 8.336080 CAGAGTAGGTGTTAACTGAAAAAGAAC 58.664 37.037 7.22 0.00 0.00 3.01
1648 1754 8.044908 AGAGTAGGTGTTAACTGAAAAAGAACA 58.955 33.333 7.22 0.00 0.00 3.18
1649 1755 8.209917 AGTAGGTGTTAACTGAAAAAGAACAG 57.790 34.615 7.22 0.00 39.65 3.16
2896 3039 6.249911 ACTACTAGTAGATAGTGCCTGACA 57.750 41.667 31.93 0.00 44.69 3.58
2934 3077 7.556635 AGGAACTTACTGCACTTAAGAAAGTTT 59.443 33.333 10.09 1.62 38.06 2.66
3239 3382 0.745468 GACGACTACCTCATCCACCC 59.255 60.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.131475 TCCTTAGGGGAATATTGTGTACACC 59.869 44.000 22.91 5.72 41.91 4.16
1 2 6.243216 TCCTTAGGGGAATATTGTGTACAC 57.757 41.667 19.36 19.36 41.91 2.90
14 15 3.913799 TGATGTCTGTTTTCCTTAGGGGA 59.086 43.478 0.00 0.00 43.41 4.81
15 16 4.301072 TGATGTCTGTTTTCCTTAGGGG 57.699 45.455 0.00 0.00 0.00 4.79
16 17 9.224267 CATATATGATGTCTGTTTTCCTTAGGG 57.776 37.037 6.92 0.00 0.00 3.53
17 18 9.784531 ACATATATGATGTCTGTTTTCCTTAGG 57.215 33.333 19.63 0.00 0.00 2.69
21 22 9.911788 AGAAACATATATGATGTCTGTTTTCCT 57.088 29.630 19.63 1.47 39.43 3.36
42 43 9.745323 GCATGTGCAAAATAAAAGATTAGAAAC 57.255 29.630 0.00 0.00 41.59 2.78
61 62 1.522668 TAGGACAAGTGTGCATGTGC 58.477 50.000 5.72 1.78 38.96 4.57
62 63 4.771590 AAATAGGACAAGTGTGCATGTG 57.228 40.909 5.72 0.00 38.96 3.21
63 64 4.826733 TGAAAATAGGACAAGTGTGCATGT 59.173 37.500 5.72 0.00 38.96 3.21
64 65 5.375417 TGAAAATAGGACAAGTGTGCATG 57.625 39.130 5.72 0.00 38.96 4.06
65 66 6.594788 AATGAAAATAGGACAAGTGTGCAT 57.405 33.333 5.72 0.00 38.96 3.96
66 67 6.403866 AAATGAAAATAGGACAAGTGTGCA 57.596 33.333 5.72 0.00 38.96 4.57
67 68 6.346838 GCAAAATGAAAATAGGACAAGTGTGC 60.347 38.462 0.00 0.00 36.57 4.57
68 69 6.700960 TGCAAAATGAAAATAGGACAAGTGTG 59.299 34.615 0.00 0.00 0.00 3.82
69 70 6.701400 GTGCAAAATGAAAATAGGACAAGTGT 59.299 34.615 0.00 0.00 0.00 3.55
70 71 6.925165 AGTGCAAAATGAAAATAGGACAAGTG 59.075 34.615 0.00 0.00 0.00 3.16
71 72 7.054491 AGTGCAAAATGAAAATAGGACAAGT 57.946 32.000 0.00 0.00 0.00 3.16
72 73 7.147312 TGAGTGCAAAATGAAAATAGGACAAG 58.853 34.615 0.00 0.00 0.00 3.16
73 74 7.048629 TGAGTGCAAAATGAAAATAGGACAA 57.951 32.000 0.00 0.00 0.00 3.18
74 75 6.647334 TGAGTGCAAAATGAAAATAGGACA 57.353 33.333 0.00 0.00 0.00 4.02
75 76 7.653311 ACTTTGAGTGCAAAATGAAAATAGGAC 59.347 33.333 0.00 0.00 42.96 3.85
76 77 7.725251 ACTTTGAGTGCAAAATGAAAATAGGA 58.275 30.769 0.00 0.00 42.96 2.94
77 78 7.869429 AGACTTTGAGTGCAAAATGAAAATAGG 59.131 33.333 0.00 0.00 42.96 2.57
78 79 8.807667 AGACTTTGAGTGCAAAATGAAAATAG 57.192 30.769 0.00 0.00 42.96 1.73
79 80 9.033481 CAAGACTTTGAGTGCAAAATGAAAATA 57.967 29.630 0.00 0.00 42.96 1.40
80 81 7.466320 GCAAGACTTTGAGTGCAAAATGAAAAT 60.466 33.333 0.00 0.00 42.96 1.82
81 82 6.183360 GCAAGACTTTGAGTGCAAAATGAAAA 60.183 34.615 0.00 0.00 42.96 2.29
82 83 5.291614 GCAAGACTTTGAGTGCAAAATGAAA 59.708 36.000 0.00 0.00 42.96 2.69
83 84 4.805192 GCAAGACTTTGAGTGCAAAATGAA 59.195 37.500 0.00 0.00 42.96 2.57
84 85 4.142204 TGCAAGACTTTGAGTGCAAAATGA 60.142 37.500 0.00 0.00 43.65 2.57
85 86 4.114073 TGCAAGACTTTGAGTGCAAAATG 58.886 39.130 0.00 0.00 43.65 2.32
86 87 4.389890 TGCAAGACTTTGAGTGCAAAAT 57.610 36.364 0.00 0.00 43.65 1.82
87 88 3.865011 TGCAAGACTTTGAGTGCAAAA 57.135 38.095 0.00 0.00 43.65 2.44
90 91 2.754552 ACTTTGCAAGACTTTGAGTGCA 59.245 40.909 0.00 0.00 44.85 4.57
91 92 3.427161 ACTTTGCAAGACTTTGAGTGC 57.573 42.857 0.00 0.00 36.36 4.40
92 93 5.991328 TCTACTTTGCAAGACTTTGAGTG 57.009 39.130 7.74 0.15 36.36 3.51
93 94 7.148340 GCATATCTACTTTGCAAGACTTTGAGT 60.148 37.037 0.00 0.75 36.36 3.41
94 95 7.185453 GCATATCTACTTTGCAAGACTTTGAG 58.815 38.462 0.00 0.00 36.36 3.02
95 96 6.094048 GGCATATCTACTTTGCAAGACTTTGA 59.906 38.462 0.00 0.00 38.12 2.69
96 97 6.094603 AGGCATATCTACTTTGCAAGACTTTG 59.905 38.462 0.00 0.00 38.12 2.77
97 98 6.183347 AGGCATATCTACTTTGCAAGACTTT 58.817 36.000 0.00 0.00 38.12 2.66
98 99 5.749462 AGGCATATCTACTTTGCAAGACTT 58.251 37.500 0.00 0.00 38.12 3.01
99 100 5.365021 AGGCATATCTACTTTGCAAGACT 57.635 39.130 0.00 0.00 38.12 3.24
100 101 7.547370 CCTATAGGCATATCTACTTTGCAAGAC 59.453 40.741 5.67 0.00 38.12 3.01
101 102 7.310671 CCCTATAGGCATATCTACTTTGCAAGA 60.311 40.741 13.85 0.00 38.12 3.02
102 103 6.820656 CCCTATAGGCATATCTACTTTGCAAG 59.179 42.308 13.85 0.00 38.12 4.01
103 104 6.500400 TCCCTATAGGCATATCTACTTTGCAA 59.500 38.462 13.85 0.00 38.12 4.08
104 105 6.022958 TCCCTATAGGCATATCTACTTTGCA 58.977 40.000 13.85 0.00 38.12 4.08
105 106 6.546428 TCCCTATAGGCATATCTACTTTGC 57.454 41.667 13.85 0.00 34.51 3.68
106 107 8.986991 AGATTCCCTATAGGCATATCTACTTTG 58.013 37.037 13.85 0.00 34.51 2.77
107 108 9.207868 GAGATTCCCTATAGGCATATCTACTTT 57.792 37.037 19.99 6.51 34.51 2.66
108 109 7.787424 GGAGATTCCCTATAGGCATATCTACTT 59.213 40.741 20.50 7.53 34.51 2.24
109 110 7.091307 TGGAGATTCCCTATAGGCATATCTACT 60.091 40.741 24.34 12.96 35.03 2.57
110 111 7.069986 TGGAGATTCCCTATAGGCATATCTAC 58.930 42.308 20.76 20.76 35.03 2.59
111 112 7.239080 TGGAGATTCCCTATAGGCATATCTA 57.761 40.000 19.99 13.47 35.03 1.98
112 113 6.110273 TGGAGATTCCCTATAGGCATATCT 57.890 41.667 20.04 20.04 35.03 1.98
113 114 6.156949 TGTTGGAGATTCCCTATAGGCATATC 59.843 42.308 13.85 12.95 35.03 1.63
114 115 6.032039 TGTTGGAGATTCCCTATAGGCATAT 58.968 40.000 13.85 4.72 35.03 1.78
115 116 5.411493 TGTTGGAGATTCCCTATAGGCATA 58.589 41.667 13.85 0.78 35.03 3.14
116 117 4.242811 TGTTGGAGATTCCCTATAGGCAT 58.757 43.478 13.85 7.31 35.03 4.40
117 118 3.664320 TGTTGGAGATTCCCTATAGGCA 58.336 45.455 13.85 0.00 35.03 4.75
118 119 4.706842 TTGTTGGAGATTCCCTATAGGC 57.293 45.455 13.85 0.00 35.03 3.93
119 120 6.234177 GTCATTGTTGGAGATTCCCTATAGG 58.766 44.000 12.27 12.27 35.03 2.57
120 121 6.234177 GGTCATTGTTGGAGATTCCCTATAG 58.766 44.000 0.00 0.00 35.03 1.31
121 122 5.073144 GGGTCATTGTTGGAGATTCCCTATA 59.927 44.000 0.00 0.00 35.03 1.31
122 123 4.141158 GGGTCATTGTTGGAGATTCCCTAT 60.141 45.833 0.00 0.00 35.03 2.57
123 124 3.202151 GGGTCATTGTTGGAGATTCCCTA 59.798 47.826 0.00 0.00 35.03 3.53
124 125 2.024941 GGGTCATTGTTGGAGATTCCCT 60.025 50.000 0.00 0.00 35.03 4.20
125 126 2.379005 GGGTCATTGTTGGAGATTCCC 58.621 52.381 0.00 0.00 35.03 3.97
126 127 2.024941 AGGGGTCATTGTTGGAGATTCC 60.025 50.000 0.00 0.00 36.96 3.01
127 128 3.372440 AGGGGTCATTGTTGGAGATTC 57.628 47.619 0.00 0.00 0.00 2.52
128 129 3.852578 AGTAGGGGTCATTGTTGGAGATT 59.147 43.478 0.00 0.00 0.00 2.40
129 130 3.456277 GAGTAGGGGTCATTGTTGGAGAT 59.544 47.826 0.00 0.00 0.00 2.75
130 131 2.838202 GAGTAGGGGTCATTGTTGGAGA 59.162 50.000 0.00 0.00 0.00 3.71
131 132 2.092914 GGAGTAGGGGTCATTGTTGGAG 60.093 54.545 0.00 0.00 0.00 3.86
132 133 1.913419 GGAGTAGGGGTCATTGTTGGA 59.087 52.381 0.00 0.00 0.00 3.53
133 134 1.406887 CGGAGTAGGGGTCATTGTTGG 60.407 57.143 0.00 0.00 0.00 3.77
134 135 1.278127 ACGGAGTAGGGGTCATTGTTG 59.722 52.381 0.00 0.00 41.94 3.33
135 136 1.652947 ACGGAGTAGGGGTCATTGTT 58.347 50.000 0.00 0.00 41.94 2.83
136 137 3.393854 ACGGAGTAGGGGTCATTGT 57.606 52.632 0.00 0.00 41.94 2.71
149 150 1.067142 TCCGAACATTTGAGGACGGAG 60.067 52.381 0.00 0.00 43.30 4.63
150 151 0.970640 TCCGAACATTTGAGGACGGA 59.029 50.000 0.00 0.00 45.36 4.69
151 152 1.933853 GATCCGAACATTTGAGGACGG 59.066 52.381 0.00 0.00 41.39 4.79
152 153 1.588404 CGATCCGAACATTTGAGGACG 59.412 52.381 0.00 0.00 35.36 4.79
153 154 1.933853 CCGATCCGAACATTTGAGGAC 59.066 52.381 0.00 0.00 35.36 3.85
154 155 1.828595 TCCGATCCGAACATTTGAGGA 59.171 47.619 0.00 0.00 37.17 3.71
155 156 1.933853 GTCCGATCCGAACATTTGAGG 59.066 52.381 0.00 0.00 0.00 3.86
156 157 1.588404 CGTCCGATCCGAACATTTGAG 59.412 52.381 0.00 0.00 0.00 3.02
157 158 1.635844 CGTCCGATCCGAACATTTGA 58.364 50.000 0.00 0.00 0.00 2.69
158 159 0.650512 CCGTCCGATCCGAACATTTG 59.349 55.000 0.00 0.00 0.00 2.32
159 160 1.087771 GCCGTCCGATCCGAACATTT 61.088 55.000 0.00 0.00 0.00 2.32
160 161 1.520787 GCCGTCCGATCCGAACATT 60.521 57.895 0.00 0.00 0.00 2.71
161 162 2.106332 GCCGTCCGATCCGAACAT 59.894 61.111 0.00 0.00 0.00 2.71
162 163 4.137872 GGCCGTCCGATCCGAACA 62.138 66.667 0.00 0.00 0.00 3.18
163 164 3.834799 AGGCCGTCCGATCCGAAC 61.835 66.667 0.00 0.00 37.47 3.95
164 165 3.833645 CAGGCCGTCCGATCCGAA 61.834 66.667 0.00 0.00 37.47 4.30
168 169 3.757248 AATGCCAGGCCGTCCGATC 62.757 63.158 9.64 0.00 37.47 3.69
169 170 2.837031 AAAATGCCAGGCCGTCCGAT 62.837 55.000 9.64 0.00 37.47 4.18
170 171 3.561120 AAAATGCCAGGCCGTCCGA 62.561 57.895 9.64 0.00 37.47 4.55
171 172 1.309499 TAAAAATGCCAGGCCGTCCG 61.309 55.000 9.64 0.00 37.47 4.79
172 173 0.455815 CTAAAAATGCCAGGCCGTCC 59.544 55.000 9.64 0.00 0.00 4.79
173 174 0.455815 CCTAAAAATGCCAGGCCGTC 59.544 55.000 9.64 0.00 0.00 4.79
174 175 2.578683 CCTAAAAATGCCAGGCCGT 58.421 52.632 9.64 0.00 0.00 5.68
182 183 2.671070 CGTGTTGGAGGCCTAAAAATGC 60.671 50.000 4.42 0.00 0.00 3.56
183 184 2.094752 CCGTGTTGGAGGCCTAAAAATG 60.095 50.000 4.42 4.02 42.00 2.32
184 185 2.167662 CCGTGTTGGAGGCCTAAAAAT 58.832 47.619 4.42 0.00 42.00 1.82
185 186 1.143277 TCCGTGTTGGAGGCCTAAAAA 59.857 47.619 4.42 0.00 43.74 1.94
186 187 0.766131 TCCGTGTTGGAGGCCTAAAA 59.234 50.000 4.42 0.00 43.74 1.52
187 188 2.454369 TCCGTGTTGGAGGCCTAAA 58.546 52.632 4.42 0.00 43.74 1.85
188 189 4.218856 TCCGTGTTGGAGGCCTAA 57.781 55.556 4.42 0.00 43.74 2.69
196 197 1.393539 CTGAATAAGCGTCCGTGTTGG 59.606 52.381 0.00 0.00 40.09 3.77
197 198 1.201921 GCTGAATAAGCGTCCGTGTTG 60.202 52.381 0.00 0.00 43.45 3.33
198 199 1.076332 GCTGAATAAGCGTCCGTGTT 58.924 50.000 0.00 0.00 43.45 3.32
199 200 2.750815 GCTGAATAAGCGTCCGTGT 58.249 52.632 0.00 0.00 43.45 4.49
208 209 5.180117 CGGACATAAATGAGGGCTGAATAAG 59.820 44.000 0.00 0.00 0.00 1.73
209 210 5.063204 CGGACATAAATGAGGGCTGAATAA 58.937 41.667 0.00 0.00 0.00 1.40
210 211 4.504864 CCGGACATAAATGAGGGCTGAATA 60.505 45.833 0.00 0.00 0.00 1.75
211 212 3.480470 CGGACATAAATGAGGGCTGAAT 58.520 45.455 0.00 0.00 0.00 2.57
212 213 2.421388 CCGGACATAAATGAGGGCTGAA 60.421 50.000 0.00 0.00 0.00 3.02
213 214 1.140852 CCGGACATAAATGAGGGCTGA 59.859 52.381 0.00 0.00 0.00 4.26
214 215 1.140852 TCCGGACATAAATGAGGGCTG 59.859 52.381 0.00 0.00 0.00 4.85
215 216 1.141053 GTCCGGACATAAATGAGGGCT 59.859 52.381 29.75 0.00 0.00 5.19
216 217 1.134220 TGTCCGGACATAAATGAGGGC 60.134 52.381 33.23 2.76 36.21 5.19
217 218 2.485479 CCTGTCCGGACATAAATGAGGG 60.485 54.545 36.21 26.03 41.01 4.30
218 219 2.485479 CCCTGTCCGGACATAAATGAGG 60.485 54.545 36.21 28.90 41.01 3.86
219 220 2.485479 CCCCTGTCCGGACATAAATGAG 60.485 54.545 36.21 22.20 41.01 2.90
220 221 1.488812 CCCCTGTCCGGACATAAATGA 59.511 52.381 36.21 13.02 41.01 2.57
221 222 1.211949 ACCCCTGTCCGGACATAAATG 59.788 52.381 36.21 23.62 41.01 2.32
222 223 1.211949 CACCCCTGTCCGGACATAAAT 59.788 52.381 36.21 19.93 41.01 1.40
223 224 0.616371 CACCCCTGTCCGGACATAAA 59.384 55.000 36.21 14.97 41.01 1.40
224 225 0.252330 TCACCCCTGTCCGGACATAA 60.252 55.000 36.21 15.36 41.01 1.90
225 226 0.974010 GTCACCCCTGTCCGGACATA 60.974 60.000 36.21 16.15 41.01 2.29
226 227 2.121832 TCACCCCTGTCCGGACAT 59.878 61.111 36.21 20.00 41.01 3.06
227 228 2.084089 TAGTCACCCCTGTCCGGACA 62.084 60.000 34.13 34.13 39.32 4.02
228 229 1.304713 TAGTCACCCCTGTCCGGAC 60.305 63.158 28.17 28.17 33.16 4.79
229 230 1.304713 GTAGTCACCCCTGTCCGGA 60.305 63.158 0.00 0.00 33.16 5.14
230 231 1.305046 AGTAGTCACCCCTGTCCGG 60.305 63.158 0.00 0.00 0.00 5.14
231 232 1.654954 CGAGTAGTCACCCCTGTCCG 61.655 65.000 0.00 0.00 0.00 4.79
232 233 1.321074 CCGAGTAGTCACCCCTGTCC 61.321 65.000 0.00 0.00 0.00 4.02
233 234 0.323178 TCCGAGTAGTCACCCCTGTC 60.323 60.000 0.00 0.00 0.00 3.51
234 235 0.113776 TTCCGAGTAGTCACCCCTGT 59.886 55.000 0.00 0.00 0.00 4.00
235 236 1.409427 GATTCCGAGTAGTCACCCCTG 59.591 57.143 0.00 0.00 0.00 4.45
236 237 1.688627 GGATTCCGAGTAGTCACCCCT 60.689 57.143 0.00 0.00 0.00 4.79
237 238 0.751452 GGATTCCGAGTAGTCACCCC 59.249 60.000 0.00 0.00 0.00 4.95
238 239 0.751452 GGGATTCCGAGTAGTCACCC 59.249 60.000 0.00 0.00 0.00 4.61
239 240 0.751452 GGGGATTCCGAGTAGTCACC 59.249 60.000 0.00 0.00 0.00 4.02
240 241 1.409427 CAGGGGATTCCGAGTAGTCAC 59.591 57.143 0.00 0.00 41.52 3.67
241 242 1.006758 ACAGGGGATTCCGAGTAGTCA 59.993 52.381 0.00 0.00 41.52 3.41
242 243 1.777941 ACAGGGGATTCCGAGTAGTC 58.222 55.000 0.00 0.00 41.52 2.59
243 244 1.831736 CAACAGGGGATTCCGAGTAGT 59.168 52.381 0.00 0.00 41.52 2.73
244 245 1.831736 ACAACAGGGGATTCCGAGTAG 59.168 52.381 0.00 0.00 41.52 2.57
245 246 1.946984 ACAACAGGGGATTCCGAGTA 58.053 50.000 0.00 0.00 41.52 2.59
246 247 1.946984 TACAACAGGGGATTCCGAGT 58.053 50.000 0.00 0.00 41.52 4.18
247 248 2.027561 TGTTACAACAGGGGATTCCGAG 60.028 50.000 0.00 0.00 41.52 4.63
248 249 1.979308 TGTTACAACAGGGGATTCCGA 59.021 47.619 0.00 0.00 41.52 4.55
249 250 2.483014 TGTTACAACAGGGGATTCCG 57.517 50.000 0.00 0.00 41.52 4.30
250 251 3.963129 TGATGTTACAACAGGGGATTCC 58.037 45.455 0.84 0.00 43.04 3.01
251 252 5.975693 TTTGATGTTACAACAGGGGATTC 57.024 39.130 0.84 0.00 43.04 2.52
252 253 6.015918 TCATTTGATGTTACAACAGGGGATT 58.984 36.000 0.84 0.00 43.04 3.01
253 254 5.579047 TCATTTGATGTTACAACAGGGGAT 58.421 37.500 0.84 0.00 43.04 3.85
254 255 4.991776 TCATTTGATGTTACAACAGGGGA 58.008 39.130 0.84 0.00 43.04 4.81
255 256 5.336690 CCTTCATTTGATGTTACAACAGGGG 60.337 44.000 0.84 0.00 43.04 4.79
256 257 5.336690 CCCTTCATTTGATGTTACAACAGGG 60.337 44.000 0.84 2.10 43.04 4.45
257 258 5.476599 TCCCTTCATTTGATGTTACAACAGG 59.523 40.000 0.84 0.00 43.04 4.00
258 259 6.430925 TCTCCCTTCATTTGATGTTACAACAG 59.569 38.462 0.84 0.00 43.04 3.16
259 260 6.303054 TCTCCCTTCATTTGATGTTACAACA 58.697 36.000 0.00 0.00 44.06 3.33
260 261 6.817765 TCTCCCTTCATTTGATGTTACAAC 57.182 37.500 0.00 0.00 0.00 3.32
261 262 7.831691 TTTCTCCCTTCATTTGATGTTACAA 57.168 32.000 0.00 0.00 0.00 2.41
262 263 7.148255 CGATTTCTCCCTTCATTTGATGTTACA 60.148 37.037 0.00 0.00 0.00 2.41
263 264 7.189512 CGATTTCTCCCTTCATTTGATGTTAC 58.810 38.462 0.00 0.00 0.00 2.50
264 265 6.318648 CCGATTTCTCCCTTCATTTGATGTTA 59.681 38.462 0.00 0.00 0.00 2.41
265 266 5.126061 CCGATTTCTCCCTTCATTTGATGTT 59.874 40.000 0.00 0.00 0.00 2.71
266 267 4.641989 CCGATTTCTCCCTTCATTTGATGT 59.358 41.667 0.00 0.00 0.00 3.06
267 268 4.883585 TCCGATTTCTCCCTTCATTTGATG 59.116 41.667 0.00 0.00 0.00 3.07
268 269 5.104360 TCTCCGATTTCTCCCTTCATTTGAT 60.104 40.000 0.00 0.00 0.00 2.57
269 270 4.225042 TCTCCGATTTCTCCCTTCATTTGA 59.775 41.667 0.00 0.00 0.00 2.69
270 271 4.517285 TCTCCGATTTCTCCCTTCATTTG 58.483 43.478 0.00 0.00 0.00 2.32
271 272 4.226168 ACTCTCCGATTTCTCCCTTCATTT 59.774 41.667 0.00 0.00 0.00 2.32
272 273 3.777522 ACTCTCCGATTTCTCCCTTCATT 59.222 43.478 0.00 0.00 0.00 2.57
273 274 3.379452 ACTCTCCGATTTCTCCCTTCAT 58.621 45.455 0.00 0.00 0.00 2.57
274 275 2.821437 ACTCTCCGATTTCTCCCTTCA 58.179 47.619 0.00 0.00 0.00 3.02
275 276 3.897141 AACTCTCCGATTTCTCCCTTC 57.103 47.619 0.00 0.00 0.00 3.46
276 277 3.870299 GCAAACTCTCCGATTTCTCCCTT 60.870 47.826 0.00 0.00 0.00 3.95
277 278 2.355209 GCAAACTCTCCGATTTCTCCCT 60.355 50.000 0.00 0.00 0.00 4.20
278 279 2.010497 GCAAACTCTCCGATTTCTCCC 58.990 52.381 0.00 0.00 0.00 4.30
279 280 2.675348 CTGCAAACTCTCCGATTTCTCC 59.325 50.000 0.00 0.00 0.00 3.71
280 281 3.369451 GTCTGCAAACTCTCCGATTTCTC 59.631 47.826 0.00 0.00 0.00 2.87
281 282 3.244215 TGTCTGCAAACTCTCCGATTTCT 60.244 43.478 0.00 0.00 0.00 2.52
282 283 3.067106 TGTCTGCAAACTCTCCGATTTC 58.933 45.455 0.00 0.00 0.00 2.17
283 284 2.808543 GTGTCTGCAAACTCTCCGATTT 59.191 45.455 0.00 0.00 0.00 2.17
284 285 2.417719 GTGTCTGCAAACTCTCCGATT 58.582 47.619 0.00 0.00 0.00 3.34
285 286 1.670087 CGTGTCTGCAAACTCTCCGAT 60.670 52.381 0.00 0.00 0.00 4.18
286 287 0.318699 CGTGTCTGCAAACTCTCCGA 60.319 55.000 0.00 0.00 0.00 4.55
287 288 0.597637 ACGTGTCTGCAAACTCTCCG 60.598 55.000 0.00 0.00 0.00 4.63
288 289 1.140816 GACGTGTCTGCAAACTCTCC 58.859 55.000 0.00 0.00 0.00 3.71
289 290 1.140816 GGACGTGTCTGCAAACTCTC 58.859 55.000 0.00 0.00 0.00 3.20
290 291 0.464036 TGGACGTGTCTGCAAACTCT 59.536 50.000 0.00 0.00 0.00 3.24
291 292 0.861837 CTGGACGTGTCTGCAAACTC 59.138 55.000 0.00 0.00 0.00 3.01
292 293 0.464036 TCTGGACGTGTCTGCAAACT 59.536 50.000 0.00 0.00 0.00 2.66
293 294 0.582005 GTCTGGACGTGTCTGCAAAC 59.418 55.000 0.00 0.00 0.00 2.93
294 295 0.531974 GGTCTGGACGTGTCTGCAAA 60.532 55.000 0.00 0.00 0.00 3.68
295 296 1.069090 GGTCTGGACGTGTCTGCAA 59.931 57.895 0.00 0.00 0.00 4.08
296 297 2.734591 GGTCTGGACGTGTCTGCA 59.265 61.111 0.00 0.00 0.00 4.41
297 298 2.048127 GGGTCTGGACGTGTCTGC 60.048 66.667 0.00 0.00 0.00 4.26
298 299 1.006102 GTGGGTCTGGACGTGTCTG 60.006 63.158 0.00 0.00 0.00 3.51
299 300 2.207924 GGTGGGTCTGGACGTGTCT 61.208 63.158 0.00 0.00 0.00 3.41
300 301 2.342648 GGTGGGTCTGGACGTGTC 59.657 66.667 0.00 0.00 0.00 3.67
301 302 3.239253 GGGTGGGTCTGGACGTGT 61.239 66.667 0.00 0.00 0.00 4.49
302 303 2.332312 TTTGGGTGGGTCTGGACGTG 62.332 60.000 0.00 0.00 0.00 4.49
303 304 1.637724 TTTTGGGTGGGTCTGGACGT 61.638 55.000 0.00 0.00 0.00 4.34
304 305 0.466555 TTTTTGGGTGGGTCTGGACG 60.467 55.000 0.00 0.00 0.00 4.79
305 306 1.328279 CTTTTTGGGTGGGTCTGGAC 58.672 55.000 0.00 0.00 0.00 4.02
306 307 0.469144 GCTTTTTGGGTGGGTCTGGA 60.469 55.000 0.00 0.00 0.00 3.86
307 308 1.471829 GGCTTTTTGGGTGGGTCTGG 61.472 60.000 0.00 0.00 0.00 3.86
308 309 0.758685 TGGCTTTTTGGGTGGGTCTG 60.759 55.000 0.00 0.00 0.00 3.51
309 310 0.190815 ATGGCTTTTTGGGTGGGTCT 59.809 50.000 0.00 0.00 0.00 3.85
310 311 0.608130 GATGGCTTTTTGGGTGGGTC 59.392 55.000 0.00 0.00 0.00 4.46
311 312 0.190815 AGATGGCTTTTTGGGTGGGT 59.809 50.000 0.00 0.00 0.00 4.51
312 313 2.102578 CTAGATGGCTTTTTGGGTGGG 58.897 52.381 0.00 0.00 0.00 4.61
313 314 3.085952 TCTAGATGGCTTTTTGGGTGG 57.914 47.619 0.00 0.00 0.00 4.61
314 315 3.633986 GGATCTAGATGGCTTTTTGGGTG 59.366 47.826 10.74 0.00 0.00 4.61
315 316 3.269381 TGGATCTAGATGGCTTTTTGGGT 59.731 43.478 10.74 0.00 0.00 4.51
316 317 3.633986 GTGGATCTAGATGGCTTTTTGGG 59.366 47.826 10.74 0.00 0.00 4.12
317 318 3.313526 CGTGGATCTAGATGGCTTTTTGG 59.686 47.826 10.74 0.00 0.00 3.28
318 319 3.941483 ACGTGGATCTAGATGGCTTTTTG 59.059 43.478 10.74 0.00 0.00 2.44
319 320 3.941483 CACGTGGATCTAGATGGCTTTTT 59.059 43.478 10.74 0.00 0.00 1.94
320 321 3.197766 TCACGTGGATCTAGATGGCTTTT 59.802 43.478 17.00 0.00 0.00 2.27
321 322 2.766263 TCACGTGGATCTAGATGGCTTT 59.234 45.455 17.00 0.00 0.00 3.51
322 323 2.388735 TCACGTGGATCTAGATGGCTT 58.611 47.619 17.00 0.00 0.00 4.35
323 324 2.073252 TCACGTGGATCTAGATGGCT 57.927 50.000 17.00 0.00 0.00 4.75
324 325 2.890808 TTCACGTGGATCTAGATGGC 57.109 50.000 17.00 0.00 0.00 4.40
325 326 3.871594 GGTTTTCACGTGGATCTAGATGG 59.128 47.826 17.00 0.00 0.00 3.51
326 327 4.759782 AGGTTTTCACGTGGATCTAGATG 58.240 43.478 17.00 0.00 0.00 2.90
327 328 4.712337 AGAGGTTTTCACGTGGATCTAGAT 59.288 41.667 17.00 4.47 0.00 1.98
328 329 4.087182 AGAGGTTTTCACGTGGATCTAGA 58.913 43.478 17.00 0.00 0.00 2.43
329 330 4.082190 TGAGAGGTTTTCACGTGGATCTAG 60.082 45.833 17.00 0.00 0.00 2.43
330 331 3.830178 TGAGAGGTTTTCACGTGGATCTA 59.170 43.478 17.00 0.00 0.00 1.98
331 332 2.632996 TGAGAGGTTTTCACGTGGATCT 59.367 45.455 17.00 6.55 0.00 2.75
332 333 2.737252 GTGAGAGGTTTTCACGTGGATC 59.263 50.000 17.00 0.75 36.01 3.36
333 334 2.767505 GTGAGAGGTTTTCACGTGGAT 58.232 47.619 17.00 0.00 36.01 3.41
334 335 2.234300 GTGAGAGGTTTTCACGTGGA 57.766 50.000 17.00 3.16 36.01 4.02
339 340 3.077359 CCATGGAGTGAGAGGTTTTCAC 58.923 50.000 5.56 0.00 44.09 3.18
340 341 2.978978 TCCATGGAGTGAGAGGTTTTCA 59.021 45.455 11.44 0.00 0.00 2.69
341 342 3.244561 TGTCCATGGAGTGAGAGGTTTTC 60.245 47.826 16.81 0.00 0.00 2.29
342 343 2.711009 TGTCCATGGAGTGAGAGGTTTT 59.289 45.455 16.81 0.00 0.00 2.43
343 344 2.338809 TGTCCATGGAGTGAGAGGTTT 58.661 47.619 16.81 0.00 0.00 3.27
344 345 2.030027 TGTCCATGGAGTGAGAGGTT 57.970 50.000 16.81 0.00 0.00 3.50
345 346 2.030027 TTGTCCATGGAGTGAGAGGT 57.970 50.000 16.81 0.00 0.00 3.85
346 347 3.641434 ATTTGTCCATGGAGTGAGAGG 57.359 47.619 16.81 0.00 0.00 3.69
347 348 4.444022 CCCTATTTGTCCATGGAGTGAGAG 60.444 50.000 16.81 9.99 0.00 3.20
348 349 3.455910 CCCTATTTGTCCATGGAGTGAGA 59.544 47.826 16.81 0.00 0.00 3.27
349 350 3.455910 TCCCTATTTGTCCATGGAGTGAG 59.544 47.826 16.81 8.28 0.00 3.51
350 351 3.459828 TCCCTATTTGTCCATGGAGTGA 58.540 45.455 16.81 3.81 0.00 3.41
351 352 3.931907 TCCCTATTTGTCCATGGAGTG 57.068 47.619 16.81 1.79 0.00 3.51
352 353 4.946160 TTTCCCTATTTGTCCATGGAGT 57.054 40.909 16.81 4.37 0.00 3.85
353 354 5.358160 GTCTTTTCCCTATTTGTCCATGGAG 59.642 44.000 16.81 1.49 0.00 3.86
354 355 5.222233 TGTCTTTTCCCTATTTGTCCATGGA 60.222 40.000 11.44 11.44 0.00 3.41
355 356 5.016173 TGTCTTTTCCCTATTTGTCCATGG 58.984 41.667 4.97 4.97 0.00 3.66
356 357 5.126061 CCTGTCTTTTCCCTATTTGTCCATG 59.874 44.000 0.00 0.00 0.00 3.66
357 358 5.264395 CCTGTCTTTTCCCTATTTGTCCAT 58.736 41.667 0.00 0.00 0.00 3.41
358 359 4.508405 CCCTGTCTTTTCCCTATTTGTCCA 60.508 45.833 0.00 0.00 0.00 4.02
359 360 4.017126 CCCTGTCTTTTCCCTATTTGTCC 58.983 47.826 0.00 0.00 0.00 4.02
360 361 4.017126 CCCCTGTCTTTTCCCTATTTGTC 58.983 47.826 0.00 0.00 0.00 3.18
361 362 3.660669 TCCCCTGTCTTTTCCCTATTTGT 59.339 43.478 0.00 0.00 0.00 2.83
362 363 4.017126 GTCCCCTGTCTTTTCCCTATTTG 58.983 47.826 0.00 0.00 0.00 2.32
363 364 3.660669 TGTCCCCTGTCTTTTCCCTATTT 59.339 43.478 0.00 0.00 0.00 1.40
364 365 3.265489 TGTCCCCTGTCTTTTCCCTATT 58.735 45.455 0.00 0.00 0.00 1.73
365 366 2.929301 TGTCCCCTGTCTTTTCCCTAT 58.071 47.619 0.00 0.00 0.00 2.57
366 367 2.374170 GTTGTCCCCTGTCTTTTCCCTA 59.626 50.000 0.00 0.00 0.00 3.53
367 368 1.145119 GTTGTCCCCTGTCTTTTCCCT 59.855 52.381 0.00 0.00 0.00 4.20
368 369 1.617322 GTTGTCCCCTGTCTTTTCCC 58.383 55.000 0.00 0.00 0.00 3.97
369 370 1.235724 CGTTGTCCCCTGTCTTTTCC 58.764 55.000 0.00 0.00 0.00 3.13
370 371 1.963172 ACGTTGTCCCCTGTCTTTTC 58.037 50.000 0.00 0.00 0.00 2.29
371 372 2.021457 CAACGTTGTCCCCTGTCTTTT 58.979 47.619 20.21 0.00 0.00 2.27
372 373 1.675552 CAACGTTGTCCCCTGTCTTT 58.324 50.000 20.21 0.00 0.00 2.52
373 374 0.179029 CCAACGTTGTCCCCTGTCTT 60.179 55.000 25.63 0.00 0.00 3.01
374 375 1.052124 TCCAACGTTGTCCCCTGTCT 61.052 55.000 25.63 0.00 0.00 3.41
375 376 0.036306 ATCCAACGTTGTCCCCTGTC 59.964 55.000 25.63 0.00 0.00 3.51
376 377 0.476771 AATCCAACGTTGTCCCCTGT 59.523 50.000 25.63 2.22 0.00 4.00
377 378 0.881118 CAATCCAACGTTGTCCCCTG 59.119 55.000 25.63 10.26 0.00 4.45
378 379 0.893727 GCAATCCAACGTTGTCCCCT 60.894 55.000 25.63 3.90 0.00 4.79
379 380 1.584495 GCAATCCAACGTTGTCCCC 59.416 57.895 25.63 7.38 0.00 4.81
380 381 0.893727 AGGCAATCCAACGTTGTCCC 60.894 55.000 25.63 16.84 31.72 4.46
381 382 0.240945 CAGGCAATCCAACGTTGTCC 59.759 55.000 25.63 17.06 31.72 4.02
382 383 1.234821 TCAGGCAATCCAACGTTGTC 58.765 50.000 25.63 3.94 33.74 3.18
383 384 1.686355 TTCAGGCAATCCAACGTTGT 58.314 45.000 25.63 6.56 33.74 3.32
384 385 2.791383 TTTCAGGCAATCCAACGTTG 57.209 45.000 21.47 21.47 33.74 4.10
385 386 3.810310 TTTTTCAGGCAATCCAACGTT 57.190 38.095 0.00 0.00 33.74 3.99
402 403 3.279434 GTCCGCAGATACCCTCATTTTT 58.721 45.455 0.00 0.00 0.00 1.94
403 404 2.238646 TGTCCGCAGATACCCTCATTTT 59.761 45.455 0.00 0.00 0.00 1.82
404 405 1.837439 TGTCCGCAGATACCCTCATTT 59.163 47.619 0.00 0.00 0.00 2.32
405 406 1.496060 TGTCCGCAGATACCCTCATT 58.504 50.000 0.00 0.00 0.00 2.57
406 407 1.345741 CATGTCCGCAGATACCCTCAT 59.654 52.381 0.00 0.00 0.00 2.90
407 408 0.752658 CATGTCCGCAGATACCCTCA 59.247 55.000 0.00 0.00 0.00 3.86
408 409 0.753262 ACATGTCCGCAGATACCCTC 59.247 55.000 0.00 0.00 0.00 4.30
409 410 0.753262 GACATGTCCGCAGATACCCT 59.247 55.000 15.31 0.00 0.00 4.34
410 411 0.249911 GGACATGTCCGCAGATACCC 60.250 60.000 28.52 3.00 40.36 3.69
411 412 3.290776 GGACATGTCCGCAGATACC 57.709 57.895 28.52 3.79 40.36 2.73
420 421 2.357034 ACACGTGCGGACATGTCC 60.357 61.111 31.59 31.59 44.34 4.02
421 422 2.380410 GGACACGTGCGGACATGTC 61.380 63.158 25.30 25.30 44.34 3.06
423 424 3.478394 CGGACACGTGCGGACATG 61.478 66.667 17.22 4.31 40.80 3.21
434 435 3.391049 GCCCTCAAATATCTACGGACAC 58.609 50.000 0.00 0.00 0.00 3.67
435 436 2.035449 CGCCCTCAAATATCTACGGACA 59.965 50.000 0.00 0.00 0.00 4.02
436 437 2.035576 ACGCCCTCAAATATCTACGGAC 59.964 50.000 0.00 0.00 0.00 4.79
437 438 2.295349 GACGCCCTCAAATATCTACGGA 59.705 50.000 0.00 0.00 0.00 4.69
438 439 2.609737 GGACGCCCTCAAATATCTACGG 60.610 54.545 0.00 0.00 0.00 4.02
439 440 2.035449 TGGACGCCCTCAAATATCTACG 59.965 50.000 0.00 0.00 0.00 3.51
440 441 3.746045 TGGACGCCCTCAAATATCTAC 57.254 47.619 0.00 0.00 0.00 2.59
441 442 4.974645 AATGGACGCCCTCAAATATCTA 57.025 40.909 0.00 0.00 0.00 1.98
442 443 3.864789 AATGGACGCCCTCAAATATCT 57.135 42.857 0.00 0.00 0.00 1.98
443 444 3.882888 TGAAATGGACGCCCTCAAATATC 59.117 43.478 0.00 0.00 0.00 1.63
444 445 3.885297 CTGAAATGGACGCCCTCAAATAT 59.115 43.478 0.00 0.00 0.00 1.28
445 446 3.278574 CTGAAATGGACGCCCTCAAATA 58.721 45.455 0.00 0.00 0.00 1.40
446 447 2.094675 CTGAAATGGACGCCCTCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
447 448 1.533625 CTGAAATGGACGCCCTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
448 449 0.322456 CCTGAAATGGACGCCCTCAA 60.322 55.000 0.00 0.00 0.00 3.02
449 450 1.198094 TCCTGAAATGGACGCCCTCA 61.198 55.000 0.00 0.00 0.00 3.86
450 451 0.035439 TTCCTGAAATGGACGCCCTC 60.035 55.000 0.00 0.00 35.58 4.30
451 452 0.625849 ATTCCTGAAATGGACGCCCT 59.374 50.000 0.00 0.00 35.58 5.19
452 453 0.740737 CATTCCTGAAATGGACGCCC 59.259 55.000 0.00 0.00 40.99 6.13
453 454 0.101219 GCATTCCTGAAATGGACGCC 59.899 55.000 0.45 0.00 44.22 5.68
454 455 0.101219 GGCATTCCTGAAATGGACGC 59.899 55.000 0.45 0.00 44.22 5.19
455 456 0.740737 GGGCATTCCTGAAATGGACG 59.259 55.000 0.45 0.00 44.22 4.79
456 457 2.149973 AGGGCATTCCTGAAATGGAC 57.850 50.000 0.45 0.00 46.07 4.02
466 467 1.111715 GCCATCTCCAAGGGCATTCC 61.112 60.000 0.00 0.00 46.92 3.01
467 468 2.423388 GCCATCTCCAAGGGCATTC 58.577 57.895 0.00 0.00 46.92 2.67
468 469 4.692930 GCCATCTCCAAGGGCATT 57.307 55.556 0.00 0.00 46.92 3.56
472 473 0.475906 CCTAAGGCCATCTCCAAGGG 59.524 60.000 5.01 0.00 31.50 3.95
473 474 0.475906 CCCTAAGGCCATCTCCAAGG 59.524 60.000 5.01 0.00 33.62 3.61
485 486 2.420022 CACGATTGAAGTTGCCCTAAGG 59.580 50.000 0.00 0.00 0.00 2.69
486 487 2.420022 CCACGATTGAAGTTGCCCTAAG 59.580 50.000 0.00 0.00 0.00 2.18
487 488 2.039216 TCCACGATTGAAGTTGCCCTAA 59.961 45.455 0.00 0.00 0.00 2.69
488 489 1.626321 TCCACGATTGAAGTTGCCCTA 59.374 47.619 0.00 0.00 0.00 3.53
489 490 0.400213 TCCACGATTGAAGTTGCCCT 59.600 50.000 0.00 0.00 0.00 5.19
490 491 1.401905 GATCCACGATTGAAGTTGCCC 59.598 52.381 0.00 0.00 0.00 5.36
491 492 2.083774 TGATCCACGATTGAAGTTGCC 58.916 47.619 0.00 0.00 0.00 4.52
492 493 2.159517 GGTGATCCACGATTGAAGTTGC 60.160 50.000 0.00 0.00 34.83 4.17
493 494 3.338249 AGGTGATCCACGATTGAAGTTG 58.662 45.455 0.00 0.00 34.83 3.16
494 495 3.703001 AGGTGATCCACGATTGAAGTT 57.297 42.857 0.00 0.00 34.83 2.66
495 496 5.118990 CAATAGGTGATCCACGATTGAAGT 58.881 41.667 11.54 0.00 39.00 3.01
496 497 4.512944 CCAATAGGTGATCCACGATTGAAG 59.487 45.833 15.99 3.12 39.00 3.02
497 498 4.163268 TCCAATAGGTGATCCACGATTGAA 59.837 41.667 15.99 0.00 39.00 2.69
498 499 3.709141 TCCAATAGGTGATCCACGATTGA 59.291 43.478 15.99 5.22 39.00 2.57
499 500 3.809832 GTCCAATAGGTGATCCACGATTG 59.190 47.826 10.56 10.56 37.73 2.67
500 501 3.454447 TGTCCAATAGGTGATCCACGATT 59.546 43.478 0.00 0.00 34.83 3.34
501 502 3.038280 TGTCCAATAGGTGATCCACGAT 58.962 45.455 0.00 0.00 34.83 3.73
502 503 2.462723 TGTCCAATAGGTGATCCACGA 58.537 47.619 0.00 0.00 34.83 4.35
503 504 2.979814 TGTCCAATAGGTGATCCACG 57.020 50.000 0.00 0.00 34.83 4.94
504 505 4.422073 TGATGTCCAATAGGTGATCCAC 57.578 45.455 0.00 0.00 35.89 4.02
505 506 4.659835 TGATGATGTCCAATAGGTGATCCA 59.340 41.667 0.00 0.00 35.89 3.41
506 507 5.233083 TGATGATGTCCAATAGGTGATCC 57.767 43.478 0.00 0.00 35.89 3.36
507 508 7.230108 ACATTTGATGATGTCCAATAGGTGATC 59.770 37.037 0.00 0.00 35.39 2.92
508 509 7.064866 ACATTTGATGATGTCCAATAGGTGAT 58.935 34.615 0.00 0.00 35.39 3.06
509 510 6.425735 ACATTTGATGATGTCCAATAGGTGA 58.574 36.000 0.00 0.00 35.39 4.02
510 511 6.704289 ACATTTGATGATGTCCAATAGGTG 57.296 37.500 0.00 0.00 35.39 4.00
511 512 6.949352 GACATTTGATGATGTCCAATAGGT 57.051 37.500 6.72 0.00 46.48 3.08
532 533 1.227380 CGGCCAGCTGTCCATAGAC 60.227 63.158 15.24 0.00 43.83 2.59
533 534 2.434843 CCGGCCAGCTGTCCATAGA 61.435 63.158 15.24 0.00 0.00 1.98
534 535 2.109799 CCGGCCAGCTGTCCATAG 59.890 66.667 15.24 0.00 0.00 2.23
535 536 3.479203 CCCGGCCAGCTGTCCATA 61.479 66.667 15.24 0.00 0.00 2.74
550 551 2.516225 GACTAATGGCCGGCACCC 60.516 66.667 30.85 12.03 0.00 4.61
551 552 2.112815 GTGACTAATGGCCGGCACC 61.113 63.158 30.85 12.89 0.00 5.01
552 553 2.112815 GGTGACTAATGGCCGGCAC 61.113 63.158 30.85 18.39 0.00 5.01
553 554 2.130821 TTGGTGACTAATGGCCGGCA 62.131 55.000 30.85 15.30 0.00 5.69
554 555 0.963355 TTTGGTGACTAATGGCCGGC 60.963 55.000 21.18 21.18 0.00 6.13
555 556 1.405105 CATTTGGTGACTAATGGCCGG 59.595 52.381 0.00 0.00 45.80 6.13
556 557 2.849880 CATTTGGTGACTAATGGCCG 57.150 50.000 0.00 0.00 45.80 6.13
563 564 9.005777 GGTTAAATACTCAACATTTGGTGACTA 57.994 33.333 0.00 0.00 36.73 2.59
567 568 8.879342 TTTGGTTAAATACTCAACATTTGGTG 57.121 30.769 0.00 0.00 0.00 4.17
575 576 9.454585 GTGGTAGTTTTTGGTTAAATACTCAAC 57.545 33.333 0.00 0.00 38.47 3.18
576 577 9.186837 TGTGGTAGTTTTTGGTTAAATACTCAA 57.813 29.630 0.00 0.00 38.47 3.02
1624 1730 8.044908 TCTGTTCTTTTTCAGTTAACACCTACT 58.955 33.333 8.61 0.00 33.89 2.57
1625 1731 8.205131 TCTGTTCTTTTTCAGTTAACACCTAC 57.795 34.615 8.61 0.00 33.89 3.18
1626 1732 8.044908 ACTCTGTTCTTTTTCAGTTAACACCTA 58.955 33.333 8.61 0.00 33.89 3.08
1627 1733 6.884836 ACTCTGTTCTTTTTCAGTTAACACCT 59.115 34.615 8.61 0.00 33.89 4.00
1628 1734 7.085052 ACTCTGTTCTTTTTCAGTTAACACC 57.915 36.000 8.61 0.00 33.89 4.16
2378 2520 2.617532 CCTCTCCAGCTTAGCTTTGCTT 60.618 50.000 3.00 0.00 40.44 3.91
2896 3039 5.763698 GCAGTAAGTTCCTAGGTTCAGTTTT 59.236 40.000 9.08 0.00 0.00 2.43
2934 3077 8.188799 CACTAATATTCAGTTTCGTCAGTCCTA 58.811 37.037 0.00 0.00 0.00 2.94
3239 3382 1.132844 CTGACGACTCTGACGACGG 59.867 63.158 0.00 0.00 34.70 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.