Multiple sequence alignment - TraesCS6A01G187200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G187200 chr6A 100.000 4175 0 0 1 4175 223416597 223412423 0.000000e+00 7710.0
1 TraesCS6A01G187200 chr6B 92.252 3459 110 42 811 4175 299046511 299049905 0.000000e+00 4758.0
2 TraesCS6A01G187200 chr6D 93.394 2316 79 24 734 2979 163137090 163134779 0.000000e+00 3362.0
3 TraesCS6A01G187200 chr6D 94.509 1202 39 15 2980 4175 163133023 163131843 0.000000e+00 1829.0
4 TraesCS6A01G187200 chr6D 91.597 238 18 1 141 378 426200743 426200978 1.120000e-85 327.0
5 TraesCS6A01G187200 chr6D 92.481 133 10 0 1 133 163143069 163142937 1.530000e-44 191.0
6 TraesCS6A01G187200 chr6D 100.000 28 0 0 526 553 431935736 431935763 8.000000e-03 52.8
7 TraesCS6A01G187200 chr3A 97.235 217 4 1 143 359 424088849 424089063 2.370000e-97 366.0
8 TraesCS6A01G187200 chr3A 94.091 220 12 1 147 366 554608050 554607832 2.410000e-87 333.0
9 TraesCS6A01G187200 chr3D 93.860 228 11 3 141 367 62813629 62813854 1.440000e-89 340.0
10 TraesCS6A01G187200 chr3D 91.845 233 17 2 141 373 587195740 587195970 1.450000e-84 324.0
11 TraesCS6A01G187200 chr2A 93.722 223 12 2 141 363 516111728 516111508 2.410000e-87 333.0
12 TraesCS6A01G187200 chr1D 92.982 228 14 2 141 367 298697900 298698126 8.650000e-87 331.0
13 TraesCS6A01G187200 chr7A 91.915 235 15 4 141 374 300511208 300510977 4.030000e-85 326.0
14 TraesCS6A01G187200 chr7A 90.226 133 13 0 1 133 660169389 660169257 1.540000e-39 174.0
15 TraesCS6A01G187200 chr4B 91.880 234 16 3 141 373 465476282 465476513 1.450000e-84 324.0
16 TraesCS6A01G187200 chr4B 90.226 133 13 0 1 133 468644702 468644834 1.540000e-39 174.0
17 TraesCS6A01G187200 chr4B 90.226 133 11 1 1 133 180904830 180904700 5.550000e-39 172.0
18 TraesCS6A01G187200 chr4B 85.393 89 11 2 722 809 603528775 603528688 1.600000e-14 91.6
19 TraesCS6A01G187200 chr2B 90.226 133 11 2 1 133 3273537 3273407 5.550000e-39 172.0
20 TraesCS6A01G187200 chr3B 89.474 133 14 0 1 133 245264761 245264629 7.180000e-38 169.0
21 TraesCS6A01G187200 chr2D 91.129 124 11 0 10 133 45691258 45691135 7.180000e-38 169.0
22 TraesCS6A01G187200 chr5D 91.129 124 9 1 10 133 456615115 456614994 2.580000e-37 167.0
23 TraesCS6A01G187200 chr5D 78.736 174 26 10 640 809 271460167 271460001 5.710000e-19 106.0
24 TraesCS6A01G187200 chr1B 88.889 135 15 0 1 135 68054815 68054949 2.580000e-37 167.0
25 TraesCS6A01G187200 chr5B 97.059 34 0 1 409 442 531660481 531660513 5.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G187200 chr6A 223412423 223416597 4174 True 7710.0 7710 100.0000 1 4175 1 chr6A.!!$R1 4174
1 TraesCS6A01G187200 chr6B 299046511 299049905 3394 False 4758.0 4758 92.2520 811 4175 1 chr6B.!!$F1 3364
2 TraesCS6A01G187200 chr6D 163131843 163137090 5247 True 2595.5 3362 93.9515 734 4175 2 chr6D.!!$R2 3441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.041047 TGCATGCGCGCTATTTGATC 60.041 50.0 33.29 12.4 42.97 2.92 F
660 661 0.179089 CATGAGGCACCGGAGAAGAG 60.179 60.0 9.46 0.0 0.00 2.85 F
661 662 0.324738 ATGAGGCACCGGAGAAGAGA 60.325 55.0 9.46 0.0 0.00 3.10 F
2766 2828 0.323542 AGGACGACGAGGGACTGATT 60.324 55.0 0.00 0.0 41.55 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 2451 2.503382 GGCGATCTCCACCTCCTCC 61.503 68.421 0.00 0.00 0.00 4.30 R
2766 2828 4.735132 CGTCGAAAGGCCTGGCGA 62.735 66.667 22.09 22.09 0.00 5.54 R
2789 2863 2.867975 CGTATCATGCTCATGCTTGTGA 59.132 45.455 5.04 0.17 42.66 3.58 R
3591 5484 1.229428 TTTGCCAGAAAGAGCACTCG 58.771 50.000 0.00 0.00 39.10 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.286297 AGATTCCGACCACATTTGAAGA 57.714 40.909 0.00 0.00 0.00 2.87
22 23 4.256920 AGATTCCGACCACATTTGAAGAG 58.743 43.478 0.00 0.00 0.00 2.85
23 24 3.485463 TTCCGACCACATTTGAAGAGT 57.515 42.857 0.00 0.00 0.00 3.24
24 25 3.485463 TCCGACCACATTTGAAGAGTT 57.515 42.857 0.00 0.00 0.00 3.01
25 26 3.815809 TCCGACCACATTTGAAGAGTTT 58.184 40.909 0.00 0.00 0.00 2.66
26 27 4.963373 TCCGACCACATTTGAAGAGTTTA 58.037 39.130 0.00 0.00 0.00 2.01
27 28 5.556915 TCCGACCACATTTGAAGAGTTTAT 58.443 37.500 0.00 0.00 0.00 1.40
28 29 6.001460 TCCGACCACATTTGAAGAGTTTATT 58.999 36.000 0.00 0.00 0.00 1.40
29 30 6.148811 TCCGACCACATTTGAAGAGTTTATTC 59.851 38.462 0.00 0.00 0.00 1.75
30 31 6.072728 CCGACCACATTTGAAGAGTTTATTCA 60.073 38.462 0.00 0.00 34.93 2.57
31 32 7.359595 CGACCACATTTGAAGAGTTTATTCAA 58.640 34.615 0.00 0.00 43.13 2.69
40 41 9.761504 TTTGAAGAGTTTATTCAAATGCATCAA 57.238 25.926 0.00 0.00 46.40 2.57
41 42 8.746922 TGAAGAGTTTATTCAAATGCATCAAC 57.253 30.769 0.00 0.00 33.85 3.18
42 43 8.358895 TGAAGAGTTTATTCAAATGCATCAACA 58.641 29.630 0.00 0.00 33.85 3.33
43 44 9.195411 GAAGAGTTTATTCAAATGCATCAACAA 57.805 29.630 0.00 0.00 0.00 2.83
44 45 9.545105 AAGAGTTTATTCAAATGCATCAACAAA 57.455 25.926 0.00 0.00 0.00 2.83
45 46 9.545105 AGAGTTTATTCAAATGCATCAACAAAA 57.455 25.926 0.00 0.00 0.00 2.44
48 49 9.253275 GTTTATTCAAATGCATCAACAAAATCG 57.747 29.630 0.00 0.00 0.00 3.34
49 50 5.842619 TTCAAATGCATCAACAAAATCGG 57.157 34.783 0.00 0.00 0.00 4.18
50 51 3.679025 TCAAATGCATCAACAAAATCGGC 59.321 39.130 0.00 0.00 0.00 5.54
51 52 3.316071 AATGCATCAACAAAATCGGCA 57.684 38.095 0.00 0.00 0.00 5.69
52 53 2.350899 TGCATCAACAAAATCGGCAG 57.649 45.000 0.00 0.00 0.00 4.85
53 54 0.994263 GCATCAACAAAATCGGCAGC 59.006 50.000 0.00 0.00 0.00 5.25
54 55 1.261989 CATCAACAAAATCGGCAGCG 58.738 50.000 0.00 0.00 0.00 5.18
55 56 1.135717 CATCAACAAAATCGGCAGCGA 60.136 47.619 0.00 0.00 0.00 4.93
56 57 0.237235 TCAACAAAATCGGCAGCGAC 59.763 50.000 0.00 0.00 0.00 5.19
57 58 0.729140 CAACAAAATCGGCAGCGACC 60.729 55.000 0.00 0.00 0.00 4.79
58 59 1.169661 AACAAAATCGGCAGCGACCA 61.170 50.000 0.00 0.00 0.00 4.02
59 60 1.169661 ACAAAATCGGCAGCGACCAA 61.170 50.000 0.00 0.00 0.00 3.67
60 61 0.729140 CAAAATCGGCAGCGACCAAC 60.729 55.000 0.00 0.00 0.00 3.77
61 62 0.889186 AAAATCGGCAGCGACCAACT 60.889 50.000 0.00 0.00 0.00 3.16
62 63 1.298859 AAATCGGCAGCGACCAACTC 61.299 55.000 0.00 0.00 0.00 3.01
63 64 2.449031 AATCGGCAGCGACCAACTCA 62.449 55.000 0.00 0.00 0.00 3.41
64 65 3.414700 CGGCAGCGACCAACTCAC 61.415 66.667 0.00 0.00 0.00 3.51
65 66 3.414700 GGCAGCGACCAACTCACG 61.415 66.667 0.00 0.00 0.00 4.35
66 67 2.355837 GCAGCGACCAACTCACGA 60.356 61.111 0.00 0.00 0.00 4.35
67 68 2.375766 GCAGCGACCAACTCACGAG 61.376 63.158 0.00 0.00 0.00 4.18
68 69 2.049063 AGCGACCAACTCACGAGC 60.049 61.111 0.00 0.00 0.00 5.03
69 70 2.355837 GCGACCAACTCACGAGCA 60.356 61.111 0.00 0.00 0.00 4.26
70 71 2.375766 GCGACCAACTCACGAGCAG 61.376 63.158 0.00 0.00 0.00 4.24
71 72 2.375766 CGACCAACTCACGAGCAGC 61.376 63.158 0.00 0.00 0.00 5.25
72 73 1.005630 GACCAACTCACGAGCAGCT 60.006 57.895 0.00 0.00 0.00 4.24
73 74 1.287730 GACCAACTCACGAGCAGCTG 61.288 60.000 10.11 10.11 0.00 4.24
74 75 1.005748 CCAACTCACGAGCAGCTGA 60.006 57.895 20.43 0.00 0.00 4.26
75 76 0.601046 CCAACTCACGAGCAGCTGAA 60.601 55.000 20.43 0.00 0.00 3.02
76 77 0.510359 CAACTCACGAGCAGCTGAAC 59.490 55.000 20.43 9.24 0.00 3.18
77 78 0.104855 AACTCACGAGCAGCTGAACA 59.895 50.000 20.43 0.00 0.00 3.18
78 79 0.104855 ACTCACGAGCAGCTGAACAA 59.895 50.000 20.43 0.00 0.00 2.83
79 80 1.220529 CTCACGAGCAGCTGAACAAA 58.779 50.000 20.43 0.00 0.00 2.83
80 81 1.194098 CTCACGAGCAGCTGAACAAAG 59.806 52.381 20.43 2.92 0.00 2.77
81 82 1.202521 TCACGAGCAGCTGAACAAAGA 60.203 47.619 20.43 4.45 0.00 2.52
82 83 1.802960 CACGAGCAGCTGAACAAAGAT 59.197 47.619 20.43 0.00 0.00 2.40
83 84 2.072298 ACGAGCAGCTGAACAAAGATC 58.928 47.619 20.43 0.00 0.00 2.75
84 85 2.289320 ACGAGCAGCTGAACAAAGATCT 60.289 45.455 20.43 0.33 0.00 2.75
85 86 2.093941 CGAGCAGCTGAACAAAGATCTG 59.906 50.000 20.43 0.00 0.00 2.90
86 87 3.332919 GAGCAGCTGAACAAAGATCTGA 58.667 45.455 20.43 0.00 0.00 3.27
87 88 3.940221 GAGCAGCTGAACAAAGATCTGAT 59.060 43.478 20.43 0.00 0.00 2.90
88 89 4.333690 AGCAGCTGAACAAAGATCTGATT 58.666 39.130 20.43 0.00 0.00 2.57
89 90 4.156190 AGCAGCTGAACAAAGATCTGATTG 59.844 41.667 20.43 0.09 0.00 2.67
90 91 4.155462 GCAGCTGAACAAAGATCTGATTGA 59.845 41.667 20.43 0.00 0.00 2.57
91 92 5.674068 GCAGCTGAACAAAGATCTGATTGAG 60.674 44.000 20.43 5.35 0.00 3.02
92 93 5.411977 CAGCTGAACAAAGATCTGATTGAGT 59.588 40.000 8.42 2.05 0.00 3.41
93 94 6.592994 CAGCTGAACAAAGATCTGATTGAGTA 59.407 38.462 8.42 0.08 0.00 2.59
94 95 7.280428 CAGCTGAACAAAGATCTGATTGAGTAT 59.720 37.037 8.42 0.00 0.00 2.12
95 96 7.495279 AGCTGAACAAAGATCTGATTGAGTATC 59.505 37.037 12.99 6.95 0.00 2.24
111 112 6.540438 TGAGTATCAGTAGGTGGTTTAAGG 57.460 41.667 0.00 0.00 42.56 2.69
112 113 5.424252 TGAGTATCAGTAGGTGGTTTAAGGG 59.576 44.000 0.00 0.00 42.56 3.95
113 114 4.720273 AGTATCAGTAGGTGGTTTAAGGGG 59.280 45.833 0.00 0.00 0.00 4.79
114 115 3.278987 TCAGTAGGTGGTTTAAGGGGA 57.721 47.619 0.00 0.00 0.00 4.81
115 116 2.908351 TCAGTAGGTGGTTTAAGGGGAC 59.092 50.000 0.00 0.00 0.00 4.46
116 117 2.640826 CAGTAGGTGGTTTAAGGGGACA 59.359 50.000 0.00 0.00 0.00 4.02
117 118 3.073356 CAGTAGGTGGTTTAAGGGGACAA 59.927 47.826 0.00 0.00 0.00 3.18
118 119 2.670019 AGGTGGTTTAAGGGGACAAC 57.330 50.000 0.00 0.00 0.00 3.32
119 120 1.854280 AGGTGGTTTAAGGGGACAACA 59.146 47.619 0.00 0.00 0.00 3.33
120 121 2.245287 AGGTGGTTTAAGGGGACAACAA 59.755 45.455 0.00 0.00 0.00 2.83
121 122 3.116900 AGGTGGTTTAAGGGGACAACAAT 60.117 43.478 0.00 0.00 0.00 2.71
122 123 3.006430 GGTGGTTTAAGGGGACAACAATG 59.994 47.826 0.00 0.00 0.00 2.82
123 124 3.639561 GTGGTTTAAGGGGACAACAATGT 59.360 43.478 0.00 0.00 44.25 2.71
124 125 4.100344 GTGGTTTAAGGGGACAACAATGTT 59.900 41.667 0.00 0.00 40.74 2.71
125 126 4.100189 TGGTTTAAGGGGACAACAATGTTG 59.900 41.667 23.00 23.00 40.74 3.33
126 127 4.502431 GGTTTAAGGGGACAACAATGTTGG 60.502 45.833 27.15 11.56 40.74 3.77
127 128 1.047801 AAGGGGACAACAATGTTGGC 58.952 50.000 27.15 25.19 40.74 4.52
128 129 0.105760 AGGGGACAACAATGTTGGCA 60.106 50.000 30.27 0.00 40.74 4.92
129 130 0.975887 GGGGACAACAATGTTGGCAT 59.024 50.000 30.27 10.64 40.74 4.40
130 131 1.338011 GGGGACAACAATGTTGGCATG 60.338 52.381 30.27 7.36 40.74 4.06
131 132 1.344114 GGGACAACAATGTTGGCATGT 59.656 47.619 30.27 10.71 40.74 3.21
132 133 2.560542 GGGACAACAATGTTGGCATGTA 59.439 45.455 30.27 0.00 40.74 2.29
133 134 3.574614 GGACAACAATGTTGGCATGTAC 58.425 45.455 30.27 11.37 40.74 2.90
134 135 3.255642 GGACAACAATGTTGGCATGTACT 59.744 43.478 30.27 7.73 40.74 2.73
135 136 4.475944 GACAACAATGTTGGCATGTACTC 58.524 43.478 25.61 9.78 40.74 2.59
136 137 4.144297 ACAACAATGTTGGCATGTACTCT 58.856 39.130 27.15 2.22 35.91 3.24
137 138 5.312895 ACAACAATGTTGGCATGTACTCTA 58.687 37.500 27.15 0.00 35.91 2.43
138 139 5.945784 ACAACAATGTTGGCATGTACTCTAT 59.054 36.000 27.15 1.52 35.91 1.98
139 140 6.127925 ACAACAATGTTGGCATGTACTCTATG 60.128 38.462 27.15 0.39 35.91 2.23
140 141 5.744171 ACAATGTTGGCATGTACTCTATGA 58.256 37.500 0.00 0.00 35.15 2.15
141 142 6.359804 ACAATGTTGGCATGTACTCTATGAT 58.640 36.000 0.00 0.00 35.15 2.45
142 143 7.508687 ACAATGTTGGCATGTACTCTATGATA 58.491 34.615 0.00 0.00 35.15 2.15
143 144 7.992608 ACAATGTTGGCATGTACTCTATGATAA 59.007 33.333 0.00 0.00 35.15 1.75
144 145 8.501580 CAATGTTGGCATGTACTCTATGATAAG 58.498 37.037 0.00 0.00 35.15 1.73
145 146 6.524734 TGTTGGCATGTACTCTATGATAAGG 58.475 40.000 0.00 0.00 0.00 2.69
146 147 6.099701 TGTTGGCATGTACTCTATGATAAGGT 59.900 38.462 0.00 0.00 0.00 3.50
147 148 6.747414 TGGCATGTACTCTATGATAAGGTT 57.253 37.500 0.00 0.00 0.00 3.50
148 149 7.136822 TGGCATGTACTCTATGATAAGGTTT 57.863 36.000 0.00 0.00 0.00 3.27
149 150 6.992123 TGGCATGTACTCTATGATAAGGTTTG 59.008 38.462 0.00 0.00 0.00 2.93
150 151 7.147567 TGGCATGTACTCTATGATAAGGTTTGA 60.148 37.037 0.00 0.00 0.00 2.69
151 152 7.880195 GGCATGTACTCTATGATAAGGTTTGAT 59.120 37.037 0.00 0.00 0.00 2.57
152 153 8.930760 GCATGTACTCTATGATAAGGTTTGATC 58.069 37.037 0.00 0.00 0.00 2.92
153 154 9.987272 CATGTACTCTATGATAAGGTTTGATCA 57.013 33.333 0.00 0.00 36.54 2.92
158 159 9.606631 ACTCTATGATAAGGTTTGATCAAAGTC 57.393 33.333 21.05 15.51 35.76 3.01
159 160 9.605275 CTCTATGATAAGGTTTGATCAAAGTCA 57.395 33.333 21.05 17.89 35.76 3.41
160 161 9.958180 TCTATGATAAGGTTTGATCAAAGTCAA 57.042 29.630 21.05 8.19 35.76 3.18
346 347 8.504005 AGTTTGACTTTGACCAAATCTTATACG 58.496 33.333 0.00 0.00 35.14 3.06
347 348 6.417191 TGACTTTGACCAAATCTTATACGC 57.583 37.500 0.00 0.00 0.00 4.42
348 349 5.935206 TGACTTTGACCAAATCTTATACGCA 59.065 36.000 0.00 0.00 0.00 5.24
349 350 6.428465 TGACTTTGACCAAATCTTATACGCAA 59.572 34.615 0.00 0.00 0.00 4.85
350 351 7.041030 TGACTTTGACCAAATCTTATACGCAAA 60.041 33.333 0.00 0.00 0.00 3.68
351 352 7.081976 ACTTTGACCAAATCTTATACGCAAAC 58.918 34.615 0.00 0.00 0.00 2.93
352 353 6.811253 TTGACCAAATCTTATACGCAAACT 57.189 33.333 0.00 0.00 0.00 2.66
353 354 7.908827 TTGACCAAATCTTATACGCAAACTA 57.091 32.000 0.00 0.00 0.00 2.24
354 355 7.908827 TGACCAAATCTTATACGCAAACTAA 57.091 32.000 0.00 0.00 0.00 2.24
355 356 8.325421 TGACCAAATCTTATACGCAAACTAAA 57.675 30.769 0.00 0.00 0.00 1.85
356 357 8.784994 TGACCAAATCTTATACGCAAACTAAAA 58.215 29.630 0.00 0.00 0.00 1.52
357 358 9.615295 GACCAAATCTTATACGCAAACTAAAAA 57.385 29.630 0.00 0.00 0.00 1.94
358 359 9.620660 ACCAAATCTTATACGCAAACTAAAAAG 57.379 29.630 0.00 0.00 0.00 2.27
359 360 9.072294 CCAAATCTTATACGCAAACTAAAAAGG 57.928 33.333 0.00 0.00 0.00 3.11
360 361 9.834628 CAAATCTTATACGCAAACTAAAAAGGA 57.165 29.630 0.00 0.00 0.00 3.36
362 363 9.836076 AATCTTATACGCAAACTAAAAAGGAAC 57.164 29.630 0.00 0.00 0.00 3.62
363 364 8.380743 TCTTATACGCAAACTAAAAAGGAACA 57.619 30.769 0.00 0.00 0.00 3.18
364 365 8.500773 TCTTATACGCAAACTAAAAAGGAACAG 58.499 33.333 0.00 0.00 0.00 3.16
365 366 6.870971 ATACGCAAACTAAAAAGGAACAGA 57.129 33.333 0.00 0.00 0.00 3.41
366 367 5.169836 ACGCAAACTAAAAAGGAACAGAG 57.830 39.130 0.00 0.00 0.00 3.35
367 368 4.879545 ACGCAAACTAAAAAGGAACAGAGA 59.120 37.500 0.00 0.00 0.00 3.10
368 369 5.355910 ACGCAAACTAAAAAGGAACAGAGAA 59.644 36.000 0.00 0.00 0.00 2.87
369 370 6.127842 ACGCAAACTAAAAAGGAACAGAGAAA 60.128 34.615 0.00 0.00 0.00 2.52
370 371 6.414987 CGCAAACTAAAAAGGAACAGAGAAAG 59.585 38.462 0.00 0.00 0.00 2.62
371 372 7.258441 GCAAACTAAAAAGGAACAGAGAAAGT 58.742 34.615 0.00 0.00 0.00 2.66
372 373 8.403236 GCAAACTAAAAAGGAACAGAGAAAGTA 58.597 33.333 0.00 0.00 0.00 2.24
411 412 7.574496 TCAAAATTTGAATTAGTGTTGCATGC 58.426 30.769 11.82 11.82 36.59 4.06
412 413 5.766702 AATTTGAATTAGTGTTGCATGCG 57.233 34.783 14.09 0.00 0.00 4.73
413 414 2.261037 TGAATTAGTGTTGCATGCGC 57.739 45.000 14.09 9.18 39.24 6.09
414 415 1.182673 GAATTAGTGTTGCATGCGCG 58.817 50.000 14.09 0.00 42.97 6.86
415 416 0.798009 AATTAGTGTTGCATGCGCGC 60.798 50.000 27.26 27.26 42.97 6.86
416 417 1.647545 ATTAGTGTTGCATGCGCGCT 61.648 50.000 33.29 24.52 42.97 5.92
417 418 1.016653 TTAGTGTTGCATGCGCGCTA 61.017 50.000 33.29 22.92 42.97 4.26
418 419 0.809636 TAGTGTTGCATGCGCGCTAT 60.810 50.000 33.29 20.49 42.97 2.97
419 420 1.226379 GTGTTGCATGCGCGCTATT 60.226 52.632 33.29 14.42 42.97 1.73
420 421 0.798009 GTGTTGCATGCGCGCTATTT 60.798 50.000 33.29 11.65 42.97 1.40
421 422 0.797629 TGTTGCATGCGCGCTATTTG 60.798 50.000 33.29 23.11 42.97 2.32
422 423 0.523125 GTTGCATGCGCGCTATTTGA 60.523 50.000 33.29 11.41 42.97 2.69
423 424 0.381445 TTGCATGCGCGCTATTTGAT 59.619 45.000 33.29 13.53 42.97 2.57
424 425 0.041047 TGCATGCGCGCTATTTGATC 60.041 50.000 33.29 12.40 42.97 2.92
425 426 1.056464 GCATGCGCGCTATTTGATCG 61.056 55.000 33.29 11.43 0.00 3.69
426 427 0.233074 CATGCGCGCTATTTGATCGT 59.767 50.000 33.29 0.00 0.00 3.73
427 428 0.233074 ATGCGCGCTATTTGATCGTG 59.767 50.000 33.29 0.00 36.87 4.35
428 429 4.478933 CGCGCTATTTGATCGTGC 57.521 55.556 5.56 0.00 0.00 5.34
430 431 1.083401 GCGCTATTTGATCGTGCGG 60.083 57.895 0.00 0.00 45.65 5.69
431 432 1.487452 GCGCTATTTGATCGTGCGGA 61.487 55.000 0.00 0.00 45.65 5.54
432 433 0.229753 CGCTATTTGATCGTGCGGAC 59.770 55.000 0.00 0.00 42.46 4.79
433 434 1.571919 GCTATTTGATCGTGCGGACT 58.428 50.000 5.27 0.00 0.00 3.85
434 435 1.933853 GCTATTTGATCGTGCGGACTT 59.066 47.619 5.27 0.00 0.00 3.01
435 436 2.351726 GCTATTTGATCGTGCGGACTTT 59.648 45.455 5.27 0.00 0.00 2.66
436 437 3.554324 GCTATTTGATCGTGCGGACTTTA 59.446 43.478 5.27 0.00 0.00 1.85
437 438 4.033587 GCTATTTGATCGTGCGGACTTTAA 59.966 41.667 5.27 0.00 0.00 1.52
438 439 5.446741 GCTATTTGATCGTGCGGACTTTAAA 60.447 40.000 5.27 2.65 0.00 1.52
439 440 4.815040 TTTGATCGTGCGGACTTTAAAA 57.185 36.364 5.27 0.00 0.00 1.52
440 441 4.815040 TTGATCGTGCGGACTTTAAAAA 57.185 36.364 5.27 0.00 0.00 1.94
458 459 4.870021 AAAAATGAGGGAGCCTAGATGT 57.130 40.909 0.00 0.00 31.76 3.06
459 460 4.429854 AAAATGAGGGAGCCTAGATGTC 57.570 45.455 0.00 0.00 31.76 3.06
460 461 3.342926 AATGAGGGAGCCTAGATGTCT 57.657 47.619 0.00 0.00 31.76 3.41
461 462 2.079170 TGAGGGAGCCTAGATGTCTG 57.921 55.000 0.00 0.00 31.76 3.51
462 463 1.337118 GAGGGAGCCTAGATGTCTGG 58.663 60.000 0.00 0.00 31.76 3.86
463 464 0.937441 AGGGAGCCTAGATGTCTGGA 59.063 55.000 0.00 0.00 28.47 3.86
464 465 1.507300 AGGGAGCCTAGATGTCTGGAT 59.493 52.381 0.00 0.00 28.47 3.41
465 466 1.622811 GGGAGCCTAGATGTCTGGATG 59.377 57.143 0.00 0.00 0.00 3.51
466 467 2.324541 GGAGCCTAGATGTCTGGATGT 58.675 52.381 0.00 0.00 0.00 3.06
467 468 3.501349 GGAGCCTAGATGTCTGGATGTA 58.499 50.000 0.00 0.00 0.00 2.29
468 469 4.093011 GGAGCCTAGATGTCTGGATGTAT 58.907 47.826 0.00 0.00 0.00 2.29
469 470 4.081752 GGAGCCTAGATGTCTGGATGTATG 60.082 50.000 0.00 0.00 0.00 2.39
470 471 3.260380 AGCCTAGATGTCTGGATGTATGC 59.740 47.826 0.00 0.00 0.00 3.14
471 472 3.007290 GCCTAGATGTCTGGATGTATGCA 59.993 47.826 0.00 0.00 0.00 3.96
472 473 4.503817 GCCTAGATGTCTGGATGTATGCAA 60.504 45.833 0.00 0.00 0.00 4.08
473 474 4.993584 CCTAGATGTCTGGATGTATGCAAC 59.006 45.833 0.00 0.00 0.00 4.17
474 475 4.767578 AGATGTCTGGATGTATGCAACT 57.232 40.909 0.00 0.00 0.00 3.16
475 476 5.876651 AGATGTCTGGATGTATGCAACTA 57.123 39.130 0.00 0.00 0.00 2.24
476 477 6.430962 AGATGTCTGGATGTATGCAACTAT 57.569 37.500 0.00 0.00 0.00 2.12
477 478 6.228995 AGATGTCTGGATGTATGCAACTATG 58.771 40.000 0.00 0.00 0.00 2.23
478 479 5.612725 TGTCTGGATGTATGCAACTATGA 57.387 39.130 0.00 0.00 0.00 2.15
479 480 6.178607 TGTCTGGATGTATGCAACTATGAT 57.821 37.500 0.00 0.00 0.00 2.45
480 481 6.594744 TGTCTGGATGTATGCAACTATGATT 58.405 36.000 0.00 0.00 0.00 2.57
481 482 6.484308 TGTCTGGATGTATGCAACTATGATTG 59.516 38.462 0.00 0.00 0.00 2.67
482 483 5.999600 TCTGGATGTATGCAACTATGATTGG 59.000 40.000 0.00 0.00 0.00 3.16
483 484 5.939447 TGGATGTATGCAACTATGATTGGA 58.061 37.500 0.00 0.00 34.15 3.53
484 485 6.545567 TGGATGTATGCAACTATGATTGGAT 58.454 36.000 0.00 3.80 42.53 3.41
485 486 6.431852 TGGATGTATGCAACTATGATTGGATG 59.568 38.462 0.00 0.00 40.43 3.51
486 487 6.656270 GGATGTATGCAACTATGATTGGATGA 59.344 38.462 0.00 0.00 40.43 2.92
487 488 6.866010 TGTATGCAACTATGATTGGATGAC 57.134 37.500 0.00 4.26 40.43 3.06
488 489 5.466393 TGTATGCAACTATGATTGGATGACG 59.534 40.000 0.00 0.00 40.43 4.35
489 490 3.205338 TGCAACTATGATTGGATGACGG 58.795 45.455 0.00 0.00 0.00 4.79
490 491 3.206150 GCAACTATGATTGGATGACGGT 58.794 45.455 0.00 0.00 0.00 4.83
491 492 3.248602 GCAACTATGATTGGATGACGGTC 59.751 47.826 0.00 0.00 0.00 4.79
492 493 4.697514 CAACTATGATTGGATGACGGTCT 58.302 43.478 9.88 0.00 0.00 3.85
493 494 4.592485 ACTATGATTGGATGACGGTCTC 57.408 45.455 9.88 4.59 0.00 3.36
494 495 2.918712 ATGATTGGATGACGGTCTCC 57.081 50.000 9.88 13.29 0.00 3.71
495 496 0.830648 TGATTGGATGACGGTCTCCC 59.169 55.000 18.02 14.69 0.00 4.30
505 506 3.930504 GGTCTCCCGTATCCGTGT 58.069 61.111 0.00 0.00 0.00 4.49
506 507 1.732308 GGTCTCCCGTATCCGTGTC 59.268 63.158 0.00 0.00 0.00 3.67
507 508 1.732308 GTCTCCCGTATCCGTGTCC 59.268 63.158 0.00 0.00 0.00 4.02
508 509 1.454479 TCTCCCGTATCCGTGTCCC 60.454 63.158 0.00 0.00 0.00 4.46
509 510 2.442643 TCCCGTATCCGTGTCCCC 60.443 66.667 0.00 0.00 0.00 4.81
510 511 3.908081 CCCGTATCCGTGTCCCCG 61.908 72.222 0.00 0.00 0.00 5.73
521 522 2.046700 GTCCCCGGACAAATGCGA 60.047 61.111 0.73 0.00 43.37 5.10
522 523 1.673009 GTCCCCGGACAAATGCGAA 60.673 57.895 0.73 0.00 43.37 4.70
523 524 1.073373 TCCCCGGACAAATGCGAAA 59.927 52.632 0.73 0.00 43.37 3.46
524 525 0.958382 TCCCCGGACAAATGCGAAAG 60.958 55.000 0.73 0.00 43.37 2.62
525 526 0.958382 CCCCGGACAAATGCGAAAGA 60.958 55.000 0.73 0.00 43.37 2.52
526 527 0.878416 CCCGGACAAATGCGAAAGAA 59.122 50.000 0.73 0.00 43.37 2.52
527 528 1.268352 CCCGGACAAATGCGAAAGAAA 59.732 47.619 0.73 0.00 43.37 2.52
528 529 2.287909 CCCGGACAAATGCGAAAGAAAA 60.288 45.455 0.73 0.00 43.37 2.29
529 530 3.574614 CCGGACAAATGCGAAAGAAAAT 58.425 40.909 0.00 0.00 43.37 1.82
530 531 3.987220 CCGGACAAATGCGAAAGAAAATT 59.013 39.130 0.00 0.00 43.37 1.82
531 532 4.447389 CCGGACAAATGCGAAAGAAAATTT 59.553 37.500 0.00 0.00 43.37 1.82
532 533 5.631512 CCGGACAAATGCGAAAGAAAATTTA 59.368 36.000 0.00 0.00 43.37 1.40
533 534 6.399564 CCGGACAAATGCGAAAGAAAATTTAC 60.400 38.462 0.00 0.00 43.37 2.01
534 535 6.513317 GGACAAATGCGAAAGAAAATTTACG 58.487 36.000 0.00 0.00 0.00 3.18
535 536 6.399564 GGACAAATGCGAAAGAAAATTTACGG 60.400 38.462 0.00 0.00 0.00 4.02
536 537 6.210078 ACAAATGCGAAAGAAAATTTACGGA 58.790 32.000 0.00 0.00 0.00 4.69
537 538 6.866248 ACAAATGCGAAAGAAAATTTACGGAT 59.134 30.769 0.00 0.00 33.86 4.18
538 539 7.383843 ACAAATGCGAAAGAAAATTTACGGATT 59.616 29.630 0.00 0.00 41.62 3.01
539 540 8.855279 CAAATGCGAAAGAAAATTTACGGATTA 58.145 29.630 15.20 0.00 39.78 1.75
540 541 7.964545 ATGCGAAAGAAAATTTACGGATTAC 57.035 32.000 0.00 0.00 0.00 1.89
541 542 6.316319 TGCGAAAGAAAATTTACGGATTACC 58.684 36.000 0.00 0.00 0.00 2.85
553 554 2.622064 GGATTACCGTTGGAGATGCT 57.378 50.000 0.00 0.00 0.00 3.79
554 555 2.484889 GGATTACCGTTGGAGATGCTC 58.515 52.381 0.00 0.00 0.00 4.26
555 556 2.103263 GGATTACCGTTGGAGATGCTCT 59.897 50.000 0.00 0.00 0.00 4.09
556 557 3.321111 GGATTACCGTTGGAGATGCTCTA 59.679 47.826 0.00 0.00 0.00 2.43
557 558 4.202223 GGATTACCGTTGGAGATGCTCTAA 60.202 45.833 0.00 0.00 0.00 2.10
558 559 2.674796 ACCGTTGGAGATGCTCTAAC 57.325 50.000 12.03 12.03 44.66 2.34
559 560 1.207329 ACCGTTGGAGATGCTCTAACC 59.793 52.381 15.10 0.00 45.09 2.85
560 561 1.207089 CCGTTGGAGATGCTCTAACCA 59.793 52.381 15.10 0.00 45.09 3.67
561 562 2.544685 CGTTGGAGATGCTCTAACCAG 58.455 52.381 15.10 2.44 45.09 4.00
562 563 2.739932 CGTTGGAGATGCTCTAACCAGG 60.740 54.545 15.10 0.00 45.09 4.45
563 564 2.237392 GTTGGAGATGCTCTAACCAGGT 59.763 50.000 11.24 0.00 43.15 4.00
564 565 2.551270 TGGAGATGCTCTAACCAGGTT 58.449 47.619 10.50 10.50 0.00 3.50
565 566 2.912956 TGGAGATGCTCTAACCAGGTTT 59.087 45.455 11.02 0.00 0.00 3.27
566 567 4.101114 TGGAGATGCTCTAACCAGGTTTA 58.899 43.478 11.02 0.00 0.00 2.01
567 568 4.534500 TGGAGATGCTCTAACCAGGTTTAA 59.466 41.667 11.02 0.00 0.00 1.52
568 569 5.191722 TGGAGATGCTCTAACCAGGTTTAAT 59.808 40.000 11.02 0.00 0.00 1.40
569 570 6.122964 GGAGATGCTCTAACCAGGTTTAATT 58.877 40.000 11.02 0.00 0.00 1.40
570 571 6.603599 GGAGATGCTCTAACCAGGTTTAATTT 59.396 38.462 11.02 0.00 0.00 1.82
571 572 7.773690 GGAGATGCTCTAACCAGGTTTAATTTA 59.226 37.037 11.02 0.00 0.00 1.40
572 573 8.507524 AGATGCTCTAACCAGGTTTAATTTAC 57.492 34.615 11.02 0.00 0.00 2.01
573 574 7.556635 AGATGCTCTAACCAGGTTTAATTTACC 59.443 37.037 11.02 2.08 35.85 2.85
574 575 5.947566 TGCTCTAACCAGGTTTAATTTACCC 59.052 40.000 11.02 0.00 36.27 3.69
575 576 5.359009 GCTCTAACCAGGTTTAATTTACCCC 59.641 44.000 11.02 0.00 36.27 4.95
576 577 6.723471 TCTAACCAGGTTTAATTTACCCCT 57.277 37.500 11.02 0.00 36.27 4.79
577 578 6.486941 TCTAACCAGGTTTAATTTACCCCTG 58.513 40.000 11.02 11.26 41.89 4.45
578 579 5.342361 AACCAGGTTTAATTTACCCCTGA 57.658 39.130 16.74 0.00 44.39 3.86
579 580 4.930696 ACCAGGTTTAATTTACCCCTGAG 58.069 43.478 16.74 11.50 44.39 3.35
580 581 4.355889 ACCAGGTTTAATTTACCCCTGAGT 59.644 41.667 16.74 11.92 44.39 3.41
581 582 5.162914 ACCAGGTTTAATTTACCCCTGAGTT 60.163 40.000 16.74 4.16 44.39 3.01
582 583 5.778241 CCAGGTTTAATTTACCCCTGAGTTT 59.222 40.000 16.74 0.00 44.39 2.66
583 584 6.269077 CCAGGTTTAATTTACCCCTGAGTTTT 59.731 38.462 16.74 0.00 44.39 2.43
584 585 7.375834 CAGGTTTAATTTACCCCTGAGTTTTC 58.624 38.462 12.30 0.00 44.39 2.29
585 586 7.232737 CAGGTTTAATTTACCCCTGAGTTTTCT 59.767 37.037 12.30 0.00 44.39 2.52
586 587 7.787904 AGGTTTAATTTACCCCTGAGTTTTCTT 59.212 33.333 5.96 0.00 36.27 2.52
587 588 8.426489 GGTTTAATTTACCCCTGAGTTTTCTTT 58.574 33.333 0.00 0.00 0.00 2.52
588 589 9.256477 GTTTAATTTACCCCTGAGTTTTCTTTG 57.744 33.333 0.00 0.00 0.00 2.77
589 590 8.541899 TTAATTTACCCCTGAGTTTTCTTTGT 57.458 30.769 0.00 0.00 0.00 2.83
590 591 9.643735 TTAATTTACCCCTGAGTTTTCTTTGTA 57.356 29.630 0.00 0.00 0.00 2.41
591 592 8.721133 AATTTACCCCTGAGTTTTCTTTGTAT 57.279 30.769 0.00 0.00 0.00 2.29
592 593 7.754851 TTTACCCCTGAGTTTTCTTTGTATC 57.245 36.000 0.00 0.00 0.00 2.24
593 594 4.663334 ACCCCTGAGTTTTCTTTGTATCC 58.337 43.478 0.00 0.00 0.00 2.59
594 595 4.354087 ACCCCTGAGTTTTCTTTGTATCCT 59.646 41.667 0.00 0.00 0.00 3.24
595 596 5.162980 ACCCCTGAGTTTTCTTTGTATCCTT 60.163 40.000 0.00 0.00 0.00 3.36
596 597 5.416013 CCCCTGAGTTTTCTTTGTATCCTTC 59.584 44.000 0.00 0.00 0.00 3.46
597 598 6.241645 CCCTGAGTTTTCTTTGTATCCTTCT 58.758 40.000 0.00 0.00 0.00 2.85
598 599 6.717084 CCCTGAGTTTTCTTTGTATCCTTCTT 59.283 38.462 0.00 0.00 0.00 2.52
599 600 7.231519 CCCTGAGTTTTCTTTGTATCCTTCTTT 59.768 37.037 0.00 0.00 0.00 2.52
600 601 8.078596 CCTGAGTTTTCTTTGTATCCTTCTTTG 58.921 37.037 0.00 0.00 0.00 2.77
601 602 8.519799 TGAGTTTTCTTTGTATCCTTCTTTGT 57.480 30.769 0.00 0.00 0.00 2.83
602 603 9.621629 TGAGTTTTCTTTGTATCCTTCTTTGTA 57.378 29.630 0.00 0.00 0.00 2.41
608 609 8.161699 TCTTTGTATCCTTCTTTGTAACAACC 57.838 34.615 0.00 0.00 0.00 3.77
609 610 7.776030 TCTTTGTATCCTTCTTTGTAACAACCA 59.224 33.333 0.00 0.00 0.00 3.67
610 611 7.883391 TTGTATCCTTCTTTGTAACAACCAA 57.117 32.000 0.00 0.00 0.00 3.67
611 612 7.266922 TGTATCCTTCTTTGTAACAACCAAC 57.733 36.000 0.00 0.00 0.00 3.77
612 613 6.829298 TGTATCCTTCTTTGTAACAACCAACA 59.171 34.615 0.00 0.00 0.00 3.33
613 614 6.783708 ATCCTTCTTTGTAACAACCAACAA 57.216 33.333 0.00 0.00 33.92 2.83
614 615 5.956642 TCCTTCTTTGTAACAACCAACAAC 58.043 37.500 0.00 0.00 35.43 3.32
615 616 5.712917 TCCTTCTTTGTAACAACCAACAACT 59.287 36.000 0.00 0.00 35.43 3.16
616 617 6.885376 TCCTTCTTTGTAACAACCAACAACTA 59.115 34.615 0.00 0.00 35.43 2.24
617 618 7.558444 TCCTTCTTTGTAACAACCAACAACTAT 59.442 33.333 0.00 0.00 35.43 2.12
618 619 7.647715 CCTTCTTTGTAACAACCAACAACTATG 59.352 37.037 0.00 0.00 35.43 2.23
619 620 7.867305 TCTTTGTAACAACCAACAACTATGA 57.133 32.000 0.00 0.00 35.43 2.15
620 621 7.925993 TCTTTGTAACAACCAACAACTATGAG 58.074 34.615 0.00 0.00 35.43 2.90
621 622 7.554835 TCTTTGTAACAACCAACAACTATGAGT 59.445 33.333 0.00 0.00 35.43 3.41
622 623 7.633193 TTGTAACAACCAACAACTATGAGTT 57.367 32.000 0.00 0.00 39.39 3.01
623 624 7.633193 TGTAACAACCAACAACTATGAGTTT 57.367 32.000 0.00 0.00 36.03 2.66
624 625 8.057536 TGTAACAACCAACAACTATGAGTTTT 57.942 30.769 0.00 0.00 36.03 2.43
625 626 9.175312 TGTAACAACCAACAACTATGAGTTTTA 57.825 29.630 0.00 0.00 36.03 1.52
633 634 9.774742 CCAACAACTATGAGTTTTAATAAGAGC 57.225 33.333 0.00 0.00 36.03 4.09
636 637 9.167311 ACAACTATGAGTTTTAATAAGAGCTGG 57.833 33.333 0.00 0.00 36.03 4.85
637 638 8.616076 CAACTATGAGTTTTAATAAGAGCTGGG 58.384 37.037 0.00 0.00 36.03 4.45
638 639 6.768381 ACTATGAGTTTTAATAAGAGCTGGGC 59.232 38.462 0.00 0.00 0.00 5.36
639 640 5.179452 TGAGTTTTAATAAGAGCTGGGCT 57.821 39.130 0.00 0.00 43.88 5.19
640 641 6.308015 TGAGTTTTAATAAGAGCTGGGCTA 57.692 37.500 0.00 0.00 39.88 3.93
641 642 6.113411 TGAGTTTTAATAAGAGCTGGGCTAC 58.887 40.000 0.00 0.00 39.88 3.58
642 643 6.062258 AGTTTTAATAAGAGCTGGGCTACA 57.938 37.500 0.00 0.00 39.88 2.74
643 644 6.663734 AGTTTTAATAAGAGCTGGGCTACAT 58.336 36.000 0.00 0.00 39.88 2.29
644 645 6.543831 AGTTTTAATAAGAGCTGGGCTACATG 59.456 38.462 0.00 0.00 39.88 3.21
645 646 5.887214 TTAATAAGAGCTGGGCTACATGA 57.113 39.130 0.00 0.00 39.88 3.07
646 647 4.348863 AATAAGAGCTGGGCTACATGAG 57.651 45.455 0.00 0.00 39.88 2.90
647 648 0.835941 AAGAGCTGGGCTACATGAGG 59.164 55.000 0.00 0.00 39.88 3.86
654 655 2.900273 GCTACATGAGGCACCGGA 59.100 61.111 9.46 0.00 0.00 5.14
655 656 1.227380 GCTACATGAGGCACCGGAG 60.227 63.158 9.46 0.00 0.00 4.63
656 657 1.676678 GCTACATGAGGCACCGGAGA 61.677 60.000 9.46 0.00 0.00 3.71
657 658 0.824109 CTACATGAGGCACCGGAGAA 59.176 55.000 9.46 0.00 0.00 2.87
658 659 0.824109 TACATGAGGCACCGGAGAAG 59.176 55.000 9.46 0.00 0.00 2.85
659 660 0.904865 ACATGAGGCACCGGAGAAGA 60.905 55.000 9.46 0.00 0.00 2.87
660 661 0.179089 CATGAGGCACCGGAGAAGAG 60.179 60.000 9.46 0.00 0.00 2.85
661 662 0.324738 ATGAGGCACCGGAGAAGAGA 60.325 55.000 9.46 0.00 0.00 3.10
662 663 0.324738 TGAGGCACCGGAGAAGAGAT 60.325 55.000 9.46 0.00 0.00 2.75
663 664 1.063942 TGAGGCACCGGAGAAGAGATA 60.064 52.381 9.46 0.00 0.00 1.98
664 665 2.032620 GAGGCACCGGAGAAGAGATAA 58.967 52.381 9.46 0.00 0.00 1.75
665 666 2.431057 GAGGCACCGGAGAAGAGATAAA 59.569 50.000 9.46 0.00 0.00 1.40
666 667 2.838202 AGGCACCGGAGAAGAGATAAAA 59.162 45.455 9.46 0.00 0.00 1.52
667 668 3.118592 AGGCACCGGAGAAGAGATAAAAG 60.119 47.826 9.46 0.00 0.00 2.27
668 669 2.609916 GCACCGGAGAAGAGATAAAAGC 59.390 50.000 9.46 0.00 0.00 3.51
669 670 3.861840 CACCGGAGAAGAGATAAAAGCA 58.138 45.455 9.46 0.00 0.00 3.91
670 671 4.253685 CACCGGAGAAGAGATAAAAGCAA 58.746 43.478 9.46 0.00 0.00 3.91
671 672 4.695455 CACCGGAGAAGAGATAAAAGCAAA 59.305 41.667 9.46 0.00 0.00 3.68
672 673 5.181245 CACCGGAGAAGAGATAAAAGCAAAA 59.819 40.000 9.46 0.00 0.00 2.44
673 674 5.768164 ACCGGAGAAGAGATAAAAGCAAAAA 59.232 36.000 9.46 0.00 0.00 1.94
693 694 6.398234 AAAAATGTATACACCAACAGCACA 57.602 33.333 7.96 0.00 0.00 4.57
694 695 5.371115 AAATGTATACACCAACAGCACAC 57.629 39.130 7.96 0.00 0.00 3.82
695 696 3.477210 TGTATACACCAACAGCACACA 57.523 42.857 0.08 0.00 0.00 3.72
696 697 4.014569 TGTATACACCAACAGCACACAT 57.985 40.909 0.08 0.00 0.00 3.21
697 698 5.153950 TGTATACACCAACAGCACACATA 57.846 39.130 0.08 0.00 0.00 2.29
698 699 5.175127 TGTATACACCAACAGCACACATAG 58.825 41.667 0.08 0.00 0.00 2.23
699 700 1.238439 ACACCAACAGCACACATAGC 58.762 50.000 0.00 0.00 0.00 2.97
700 701 1.237533 CACCAACAGCACACATAGCA 58.762 50.000 0.00 0.00 0.00 3.49
701 702 1.814394 CACCAACAGCACACATAGCAT 59.186 47.619 0.00 0.00 0.00 3.79
702 703 3.009026 CACCAACAGCACACATAGCATA 58.991 45.455 0.00 0.00 0.00 3.14
703 704 3.064408 CACCAACAGCACACATAGCATAG 59.936 47.826 0.00 0.00 0.00 2.23
704 705 3.055167 ACCAACAGCACACATAGCATAGA 60.055 43.478 0.00 0.00 0.00 1.98
705 706 3.558829 CCAACAGCACACATAGCATAGAG 59.441 47.826 0.00 0.00 0.00 2.43
706 707 4.436332 CAACAGCACACATAGCATAGAGA 58.564 43.478 0.00 0.00 0.00 3.10
707 708 4.743057 ACAGCACACATAGCATAGAGAA 57.257 40.909 0.00 0.00 0.00 2.87
708 709 5.089970 ACAGCACACATAGCATAGAGAAA 57.910 39.130 0.00 0.00 0.00 2.52
709 710 4.872691 ACAGCACACATAGCATAGAGAAAC 59.127 41.667 0.00 0.00 0.00 2.78
710 711 4.872124 CAGCACACATAGCATAGAGAAACA 59.128 41.667 0.00 0.00 0.00 2.83
711 712 5.352293 CAGCACACATAGCATAGAGAAACAA 59.648 40.000 0.00 0.00 0.00 2.83
712 713 5.939883 AGCACACATAGCATAGAGAAACAAA 59.060 36.000 0.00 0.00 0.00 2.83
713 714 6.093219 AGCACACATAGCATAGAGAAACAAAG 59.907 38.462 0.00 0.00 0.00 2.77
714 715 6.676456 GCACACATAGCATAGAGAAACAAAGG 60.676 42.308 0.00 0.00 0.00 3.11
715 716 5.882557 ACACATAGCATAGAGAAACAAAGGG 59.117 40.000 0.00 0.00 0.00 3.95
716 717 5.297776 CACATAGCATAGAGAAACAAAGGGG 59.702 44.000 0.00 0.00 0.00 4.79
717 718 3.372440 AGCATAGAGAAACAAAGGGGG 57.628 47.619 0.00 0.00 0.00 5.40
732 733 1.739667 GGGGGAAACACAACACAGC 59.260 57.895 0.00 0.00 32.66 4.40
756 757 2.280524 CACCGTGGGCAAAGTCGA 60.281 61.111 0.00 0.00 0.00 4.20
784 785 2.626780 GCCAGCCGAGACCAAAACC 61.627 63.158 0.00 0.00 0.00 3.27
795 796 1.476488 GACCAAAACCAACACACTGCT 59.524 47.619 0.00 0.00 0.00 4.24
797 798 2.301583 ACCAAAACCAACACACTGCTTT 59.698 40.909 0.00 0.00 0.00 3.51
803 804 1.400142 CCAACACACTGCTTTGTCGAA 59.600 47.619 0.00 0.00 0.00 3.71
825 840 2.785681 GCAATTCAATCGAGACTGCACG 60.786 50.000 0.00 0.00 30.66 5.34
849 864 1.743252 GCGAAACCTGGCAGAGAGG 60.743 63.158 17.94 1.80 36.57 3.69
889 921 7.172868 TGCCACAGACATCATGATTTATTTT 57.827 32.000 5.16 0.00 0.00 1.82
890 922 7.036829 TGCCACAGACATCATGATTTATTTTG 58.963 34.615 5.16 0.00 0.00 2.44
891 923 7.093858 TGCCACAGACATCATGATTTATTTTGA 60.094 33.333 5.16 0.00 0.00 2.69
892 924 7.924412 GCCACAGACATCATGATTTATTTTGAT 59.076 33.333 5.16 0.00 0.00 2.57
893 925 9.811995 CCACAGACATCATGATTTATTTTGATT 57.188 29.630 5.16 0.00 0.00 2.57
976 1008 3.667050 GACGAACGCTGCTTTATAAACC 58.333 45.455 0.00 0.00 0.00 3.27
1107 1145 1.202915 TGCTCCATTGCTCTGGAAACA 60.203 47.619 8.81 7.52 44.59 2.83
1166 1204 1.206610 TCTGCTCCTCATGTCTTCTGC 59.793 52.381 0.00 0.00 0.00 4.26
1178 1216 3.989698 CTTCTGCGGCCGTGATCGT 62.990 63.158 28.70 0.00 35.01 3.73
1202 1240 3.365767 GCGTTTCTGGTCTACTTCTACGT 60.366 47.826 0.00 0.00 0.00 3.57
1279 1317 1.227089 CTCCATCTCCTCGCCAACG 60.227 63.158 0.00 0.00 42.01 4.10
1336 1374 1.149401 GGCCCCATCTTCAGGTAGC 59.851 63.158 0.00 0.00 0.00 3.58
1343 1384 3.379372 CCCATCTTCAGGTAGCAATGTTG 59.621 47.826 0.00 0.00 0.00 3.33
1352 1393 5.130975 TCAGGTAGCAATGTTGTATCCATCT 59.869 40.000 0.00 0.00 0.00 2.90
1355 1396 6.058183 GGTAGCAATGTTGTATCCATCTTCT 58.942 40.000 0.00 0.00 0.00 2.85
1356 1397 6.017605 GGTAGCAATGTTGTATCCATCTTCTG 60.018 42.308 0.00 0.00 0.00 3.02
1359 1400 5.449588 GCAATGTTGTATCCATCTTCTGGTG 60.450 44.000 0.00 0.00 46.08 4.17
1361 1402 2.945668 GTTGTATCCATCTTCTGGTGCC 59.054 50.000 0.00 0.00 46.08 5.01
1362 1403 2.195727 TGTATCCATCTTCTGGTGCCA 58.804 47.619 0.00 0.00 46.08 4.92
1363 1404 2.779430 TGTATCCATCTTCTGGTGCCAT 59.221 45.455 0.00 0.00 46.08 4.40
1364 1405 2.359981 ATCCATCTTCTGGTGCCATG 57.640 50.000 0.00 0.00 46.08 3.66
1366 1407 2.195727 TCCATCTTCTGGTGCCATGTA 58.804 47.619 0.00 0.00 46.08 2.29
1559 1621 3.991536 GACGCGCTCTTCCTCACCC 62.992 68.421 5.73 0.00 0.00 4.61
1570 1632 3.760035 CTCACCCGGGACTCCACG 61.760 72.222 32.02 6.06 0.00 4.94
1654 1716 1.878522 GACGATGCAGCCCTACGTG 60.879 63.158 0.00 0.00 37.32 4.49
1655 1717 2.279502 GACGATGCAGCCCTACGTGA 62.280 60.000 0.00 0.00 37.32 4.35
1795 1857 4.314440 TGCAAGAAGGTCGCCGCT 62.314 61.111 0.00 0.00 0.00 5.52
2308 2370 3.148279 GCCGACGACCTCCAGGAT 61.148 66.667 0.00 0.00 38.94 3.24
2309 2371 3.121019 CCGACGACCTCCAGGATC 58.879 66.667 0.00 0.00 38.94 3.36
2766 2828 0.323542 AGGACGACGAGGGACTGATT 60.324 55.000 0.00 0.00 41.55 2.57
2776 2838 2.586792 GACTGATTCGCCAGGCCT 59.413 61.111 5.63 0.00 36.18 5.19
2780 2842 1.709147 CTGATTCGCCAGGCCTTTCG 61.709 60.000 0.00 10.17 0.00 3.46
2789 2863 1.302511 AGGCCTTTCGACGTGCAAT 60.303 52.632 0.00 0.00 0.00 3.56
2818 2892 0.855349 GAGCATGATACGACGGCTTG 59.145 55.000 0.00 0.00 34.44 4.01
2834 2908 4.555709 TGGGTGGCGTGGTGTGTC 62.556 66.667 0.00 0.00 0.00 3.67
2958 3063 1.742831 GGTAATCTGAAATGTGCGGCA 59.257 47.619 0.00 0.00 0.00 5.69
2959 3064 2.163412 GGTAATCTGAAATGTGCGGCAA 59.837 45.455 3.23 0.00 0.00 4.52
2960 3065 2.352503 AATCTGAAATGTGCGGCAAC 57.647 45.000 3.23 0.00 0.00 4.17
2974 3079 1.873591 CGGCAACTAGCTCTTTTGTGT 59.126 47.619 0.00 0.00 44.79 3.72
3031 4917 6.564557 AACAGGCAATCCCATCAATATTTT 57.435 33.333 0.00 0.00 35.39 1.82
3089 4975 8.098220 TGATTTGCACGCAATGATACTATTAT 57.902 30.769 5.11 0.00 35.70 1.28
3090 4976 8.567104 TGATTTGCACGCAATGATACTATTATT 58.433 29.630 5.11 0.00 35.70 1.40
3229 5118 4.225042 ACTGGCACTGTAGGAATGTTGATA 59.775 41.667 0.00 0.00 39.19 2.15
3265 5157 5.539048 TGCTTCACTTAACAGTTACTCCTC 58.461 41.667 0.00 0.00 0.00 3.71
3269 5161 4.021368 TCACTTAACAGTTACTCCTCCTGC 60.021 45.833 0.00 0.00 0.00 4.85
3291 5183 4.263911 GCTCGAAAATGCAAGCAATTCTAC 59.736 41.667 16.60 6.96 34.86 2.59
3304 5196 4.935808 AGCAATTCTACTAGTTTTGTCCCG 59.064 41.667 0.00 0.00 0.00 5.14
3307 5199 6.402226 GCAATTCTACTAGTTTTGTCCCGAAG 60.402 42.308 0.00 0.00 0.00 3.79
3310 5202 3.397849 ACTAGTTTTGTCCCGAAGTCC 57.602 47.619 0.00 0.00 0.00 3.85
3501 5394 8.405418 ACAGATGATATTTACGAGTAGGCTTA 57.595 34.615 0.00 0.00 0.00 3.09
3511 5404 5.365021 ACGAGTAGGCTTAGGTACTTAGA 57.635 43.478 0.00 0.00 37.25 2.10
3512 5405 5.939447 ACGAGTAGGCTTAGGTACTTAGAT 58.061 41.667 0.00 0.00 37.25 1.98
3580 5473 2.639327 ATTTTGACTGCGCCTGCCC 61.639 57.895 4.18 0.00 41.78 5.36
3591 5484 0.039165 CGCCTGCCCAAAGAAAGAAC 60.039 55.000 0.00 0.00 0.00 3.01
3642 5535 4.792704 GCGGATTATCGATGCCAAAATGTT 60.793 41.667 8.54 0.00 0.00 2.71
3650 5543 0.031857 TGCCAAAATGTTGCACGAGG 59.968 50.000 0.00 0.00 33.01 4.63
4006 5904 9.654663 AGAAAATAGTAAGCACTCGAATACTTT 57.345 29.630 0.00 0.00 36.14 2.66
4121 6020 9.543783 GATCATTGAAGATATATATCTGCAGCA 57.456 33.333 25.87 16.88 46.28 4.41
4140 6039 2.979813 GCAAATGTCTAACCAAGCGTTG 59.020 45.455 0.00 0.00 35.79 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.256920 CTCTTCAAATGTGGTCGGAATCT 58.743 43.478 0.00 0.00 0.00 2.40
1 2 4.003648 ACTCTTCAAATGTGGTCGGAATC 58.996 43.478 0.00 0.00 0.00 2.52
2 3 4.021102 ACTCTTCAAATGTGGTCGGAAT 57.979 40.909 0.00 0.00 0.00 3.01
3 4 3.485463 ACTCTTCAAATGTGGTCGGAA 57.515 42.857 0.00 0.00 0.00 4.30
4 5 3.485463 AACTCTTCAAATGTGGTCGGA 57.515 42.857 0.00 0.00 0.00 4.55
5 6 5.880054 ATAAACTCTTCAAATGTGGTCGG 57.120 39.130 0.00 0.00 0.00 4.79
6 7 6.898041 TGAATAAACTCTTCAAATGTGGTCG 58.102 36.000 0.00 0.00 29.96 4.79
15 16 9.195411 GTTGATGCATTTGAATAAACTCTTCAA 57.805 29.630 0.00 0.00 40.02 2.69
16 17 8.358895 TGTTGATGCATTTGAATAAACTCTTCA 58.641 29.630 0.00 0.00 0.00 3.02
17 18 8.746922 TGTTGATGCATTTGAATAAACTCTTC 57.253 30.769 0.00 0.00 0.00 2.87
18 19 9.545105 TTTGTTGATGCATTTGAATAAACTCTT 57.455 25.926 0.00 0.00 0.00 2.85
19 20 9.545105 TTTTGTTGATGCATTTGAATAAACTCT 57.455 25.926 0.00 0.00 0.00 3.24
22 23 9.253275 CGATTTTGTTGATGCATTTGAATAAAC 57.747 29.630 0.00 0.00 0.00 2.01
23 24 8.441608 CCGATTTTGTTGATGCATTTGAATAAA 58.558 29.630 0.00 3.08 0.00 1.40
24 25 7.412781 GCCGATTTTGTTGATGCATTTGAATAA 60.413 33.333 0.00 0.00 0.00 1.40
25 26 6.035866 GCCGATTTTGTTGATGCATTTGAATA 59.964 34.615 0.00 0.00 0.00 1.75
26 27 5.163834 GCCGATTTTGTTGATGCATTTGAAT 60.164 36.000 0.00 0.00 0.00 2.57
27 28 4.152045 GCCGATTTTGTTGATGCATTTGAA 59.848 37.500 0.00 0.00 0.00 2.69
28 29 3.679025 GCCGATTTTGTTGATGCATTTGA 59.321 39.130 0.00 0.00 0.00 2.69
29 30 3.432592 TGCCGATTTTGTTGATGCATTTG 59.567 39.130 0.00 0.00 0.00 2.32
30 31 3.661944 TGCCGATTTTGTTGATGCATTT 58.338 36.364 0.00 0.00 0.00 2.32
31 32 3.255725 CTGCCGATTTTGTTGATGCATT 58.744 40.909 0.00 0.00 0.00 3.56
32 33 2.883574 CTGCCGATTTTGTTGATGCAT 58.116 42.857 0.00 0.00 0.00 3.96
33 34 1.669502 GCTGCCGATTTTGTTGATGCA 60.670 47.619 0.00 0.00 0.00 3.96
34 35 0.994263 GCTGCCGATTTTGTTGATGC 59.006 50.000 0.00 0.00 0.00 3.91
35 36 1.135717 TCGCTGCCGATTTTGTTGATG 60.136 47.619 0.00 0.00 38.82 3.07
36 37 1.135689 GTCGCTGCCGATTTTGTTGAT 60.136 47.619 0.00 0.00 46.38 2.57
37 38 0.237235 GTCGCTGCCGATTTTGTTGA 59.763 50.000 0.00 0.00 46.38 3.18
38 39 0.729140 GGTCGCTGCCGATTTTGTTG 60.729 55.000 0.00 0.00 46.38 3.33
39 40 1.169661 TGGTCGCTGCCGATTTTGTT 61.170 50.000 0.00 0.00 46.38 2.83
40 41 1.169661 TTGGTCGCTGCCGATTTTGT 61.170 50.000 0.00 0.00 46.38 2.83
41 42 0.729140 GTTGGTCGCTGCCGATTTTG 60.729 55.000 0.00 0.00 46.38 2.44
42 43 0.889186 AGTTGGTCGCTGCCGATTTT 60.889 50.000 0.00 0.00 46.38 1.82
43 44 1.298859 GAGTTGGTCGCTGCCGATTT 61.299 55.000 0.00 0.00 46.38 2.17
44 45 1.741770 GAGTTGGTCGCTGCCGATT 60.742 57.895 0.00 0.00 46.38 3.34
45 46 2.125512 GAGTTGGTCGCTGCCGAT 60.126 61.111 0.00 0.00 46.38 4.18
46 47 3.611674 TGAGTTGGTCGCTGCCGA 61.612 61.111 0.00 0.00 42.01 5.54
47 48 3.414700 GTGAGTTGGTCGCTGCCG 61.415 66.667 0.00 0.00 32.41 5.69
48 49 3.414700 CGTGAGTTGGTCGCTGCC 61.415 66.667 0.00 0.00 33.04 4.85
49 50 2.355837 TCGTGAGTTGGTCGCTGC 60.356 61.111 0.00 0.00 33.04 5.25
50 51 2.375766 GCTCGTGAGTTGGTCGCTG 61.376 63.158 0.00 0.00 33.04 5.18
51 52 2.049063 GCTCGTGAGTTGGTCGCT 60.049 61.111 0.00 0.00 33.04 4.93
52 53 2.355837 TGCTCGTGAGTTGGTCGC 60.356 61.111 0.00 0.00 0.00 5.19
53 54 2.375766 GCTGCTCGTGAGTTGGTCG 61.376 63.158 0.00 0.00 0.00 4.79
54 55 1.005630 AGCTGCTCGTGAGTTGGTC 60.006 57.895 0.00 0.00 0.00 4.02
55 56 1.301244 CAGCTGCTCGTGAGTTGGT 60.301 57.895 0.00 0.00 0.00 3.67
56 57 0.601046 TTCAGCTGCTCGTGAGTTGG 60.601 55.000 9.47 0.00 0.00 3.77
57 58 0.510359 GTTCAGCTGCTCGTGAGTTG 59.490 55.000 9.47 0.00 0.00 3.16
58 59 0.104855 TGTTCAGCTGCTCGTGAGTT 59.895 50.000 9.47 0.00 0.00 3.01
59 60 0.104855 TTGTTCAGCTGCTCGTGAGT 59.895 50.000 9.47 0.00 0.00 3.41
60 61 1.194098 CTTTGTTCAGCTGCTCGTGAG 59.806 52.381 9.47 0.00 0.00 3.51
61 62 1.202521 TCTTTGTTCAGCTGCTCGTGA 60.203 47.619 9.47 0.00 0.00 4.35
62 63 1.220529 TCTTTGTTCAGCTGCTCGTG 58.779 50.000 9.47 0.00 0.00 4.35
63 64 2.072298 GATCTTTGTTCAGCTGCTCGT 58.928 47.619 9.47 0.00 0.00 4.18
64 65 2.093941 CAGATCTTTGTTCAGCTGCTCG 59.906 50.000 9.47 0.00 0.00 5.03
65 66 3.332919 TCAGATCTTTGTTCAGCTGCTC 58.667 45.455 9.47 4.90 0.00 4.26
66 67 3.413846 TCAGATCTTTGTTCAGCTGCT 57.586 42.857 9.47 0.00 0.00 4.24
67 68 4.155462 TCAATCAGATCTTTGTTCAGCTGC 59.845 41.667 9.47 0.00 0.00 5.25
68 69 5.411977 ACTCAATCAGATCTTTGTTCAGCTG 59.588 40.000 7.63 7.63 0.00 4.24
69 70 5.558818 ACTCAATCAGATCTTTGTTCAGCT 58.441 37.500 6.96 0.00 0.00 4.24
70 71 5.876612 ACTCAATCAGATCTTTGTTCAGC 57.123 39.130 6.96 0.00 0.00 4.26
71 72 8.713737 TGATACTCAATCAGATCTTTGTTCAG 57.286 34.615 6.96 1.40 39.77 3.02
84 85 6.620877 AAACCACCTACTGATACTCAATCA 57.379 37.500 0.00 0.00 42.48 2.57
85 86 7.711339 CCTTAAACCACCTACTGATACTCAATC 59.289 40.741 0.00 0.00 34.93 2.67
86 87 7.365652 CCCTTAAACCACCTACTGATACTCAAT 60.366 40.741 0.00 0.00 0.00 2.57
87 88 6.070424 CCCTTAAACCACCTACTGATACTCAA 60.070 42.308 0.00 0.00 0.00 3.02
88 89 5.424252 CCCTTAAACCACCTACTGATACTCA 59.576 44.000 0.00 0.00 0.00 3.41
89 90 5.163332 CCCCTTAAACCACCTACTGATACTC 60.163 48.000 0.00 0.00 0.00 2.59
90 91 4.720273 CCCCTTAAACCACCTACTGATACT 59.280 45.833 0.00 0.00 0.00 2.12
91 92 4.718276 TCCCCTTAAACCACCTACTGATAC 59.282 45.833 0.00 0.00 0.00 2.24
92 93 4.718276 GTCCCCTTAAACCACCTACTGATA 59.282 45.833 0.00 0.00 0.00 2.15
93 94 3.522343 GTCCCCTTAAACCACCTACTGAT 59.478 47.826 0.00 0.00 0.00 2.90
94 95 2.908351 GTCCCCTTAAACCACCTACTGA 59.092 50.000 0.00 0.00 0.00 3.41
95 96 2.640826 TGTCCCCTTAAACCACCTACTG 59.359 50.000 0.00 0.00 0.00 2.74
96 97 2.994355 TGTCCCCTTAAACCACCTACT 58.006 47.619 0.00 0.00 0.00 2.57
97 98 3.181441 TGTTGTCCCCTTAAACCACCTAC 60.181 47.826 0.00 0.00 0.00 3.18
98 99 3.054576 TGTTGTCCCCTTAAACCACCTA 58.945 45.455 0.00 0.00 0.00 3.08
99 100 1.854280 TGTTGTCCCCTTAAACCACCT 59.146 47.619 0.00 0.00 0.00 4.00
100 101 2.368311 TGTTGTCCCCTTAAACCACC 57.632 50.000 0.00 0.00 0.00 4.61
101 102 3.639561 ACATTGTTGTCCCCTTAAACCAC 59.360 43.478 0.00 0.00 0.00 4.16
102 103 3.917300 ACATTGTTGTCCCCTTAAACCA 58.083 40.909 0.00 0.00 0.00 3.67
103 104 4.502431 CCAACATTGTTGTCCCCTTAAACC 60.502 45.833 24.01 0.00 34.06 3.27
104 105 4.627058 CCAACATTGTTGTCCCCTTAAAC 58.373 43.478 24.01 0.00 34.06 2.01
105 106 3.070302 GCCAACATTGTTGTCCCCTTAAA 59.930 43.478 24.01 0.00 34.06 1.52
106 107 2.630580 GCCAACATTGTTGTCCCCTTAA 59.369 45.455 24.01 0.00 34.06 1.85
107 108 2.243810 GCCAACATTGTTGTCCCCTTA 58.756 47.619 24.01 0.00 34.06 2.69
108 109 1.047801 GCCAACATTGTTGTCCCCTT 58.952 50.000 24.01 0.00 34.06 3.95
109 110 0.105760 TGCCAACATTGTTGTCCCCT 60.106 50.000 24.01 0.00 34.06 4.79
110 111 0.975887 ATGCCAACATTGTTGTCCCC 59.024 50.000 24.01 12.20 34.06 4.81
111 112 1.344114 ACATGCCAACATTGTTGTCCC 59.656 47.619 24.01 14.21 34.06 4.46
112 113 2.818130 ACATGCCAACATTGTTGTCC 57.182 45.000 24.01 16.24 34.06 4.02
113 114 4.216257 AGAGTACATGCCAACATTGTTGTC 59.784 41.667 24.01 14.97 34.06 3.18
114 115 4.144297 AGAGTACATGCCAACATTGTTGT 58.856 39.130 24.01 11.51 37.82 3.32
115 116 4.771590 AGAGTACATGCCAACATTGTTG 57.228 40.909 20.31 20.31 32.87 3.33
116 117 6.179756 TCATAGAGTACATGCCAACATTGTT 58.820 36.000 0.00 0.00 32.87 2.83
117 118 5.744171 TCATAGAGTACATGCCAACATTGT 58.256 37.500 0.00 0.00 32.87 2.71
118 119 6.872628 ATCATAGAGTACATGCCAACATTG 57.127 37.500 0.00 0.00 32.87 2.82
119 120 7.663081 CCTTATCATAGAGTACATGCCAACATT 59.337 37.037 0.00 0.00 32.87 2.71
120 121 7.164122 CCTTATCATAGAGTACATGCCAACAT 58.836 38.462 0.00 0.00 36.79 2.71
121 122 6.099701 ACCTTATCATAGAGTACATGCCAACA 59.900 38.462 0.00 0.00 0.00 3.33
122 123 6.525629 ACCTTATCATAGAGTACATGCCAAC 58.474 40.000 0.00 0.00 0.00 3.77
123 124 6.747414 ACCTTATCATAGAGTACATGCCAA 57.253 37.500 0.00 0.00 0.00 4.52
124 125 6.747414 AACCTTATCATAGAGTACATGCCA 57.253 37.500 0.00 0.00 0.00 4.92
125 126 7.217200 TCAAACCTTATCATAGAGTACATGCC 58.783 38.462 0.00 0.00 0.00 4.40
126 127 8.839310 ATCAAACCTTATCATAGAGTACATGC 57.161 34.615 0.00 0.00 0.00 4.06
127 128 9.987272 TGATCAAACCTTATCATAGAGTACATG 57.013 33.333 0.00 0.00 0.00 3.21
132 133 9.606631 GACTTTGATCAAACCTTATCATAGAGT 57.393 33.333 16.91 8.37 35.78 3.24
133 134 9.605275 TGACTTTGATCAAACCTTATCATAGAG 57.395 33.333 16.91 5.21 35.78 2.43
134 135 9.958180 TTGACTTTGATCAAACCTTATCATAGA 57.042 29.630 16.91 0.29 35.65 1.98
320 321 8.504005 CGTATAAGATTTGGTCAAAGTCAAACT 58.496 33.333 2.55 0.00 35.97 2.66
321 322 7.270579 GCGTATAAGATTTGGTCAAAGTCAAAC 59.729 37.037 2.55 0.00 35.97 2.93
322 323 7.041030 TGCGTATAAGATTTGGTCAAAGTCAAA 60.041 33.333 2.55 0.00 37.29 2.69
323 324 6.428465 TGCGTATAAGATTTGGTCAAAGTCAA 59.572 34.615 2.55 0.00 33.32 3.18
324 325 5.935206 TGCGTATAAGATTTGGTCAAAGTCA 59.065 36.000 2.55 0.00 33.32 3.41
325 326 6.417191 TGCGTATAAGATTTGGTCAAAGTC 57.583 37.500 2.55 1.51 33.32 3.01
326 327 6.811253 TTGCGTATAAGATTTGGTCAAAGT 57.189 33.333 2.55 0.00 33.32 2.66
327 328 7.305474 AGTTTGCGTATAAGATTTGGTCAAAG 58.695 34.615 2.55 0.00 33.32 2.77
328 329 7.209471 AGTTTGCGTATAAGATTTGGTCAAA 57.791 32.000 0.00 0.00 34.46 2.69
329 330 6.811253 AGTTTGCGTATAAGATTTGGTCAA 57.189 33.333 0.00 0.00 0.00 3.18
330 331 7.908827 TTAGTTTGCGTATAAGATTTGGTCA 57.091 32.000 0.00 0.00 0.00 4.02
331 332 9.615295 TTTTTAGTTTGCGTATAAGATTTGGTC 57.385 29.630 0.00 0.00 0.00 4.02
332 333 9.620660 CTTTTTAGTTTGCGTATAAGATTTGGT 57.379 29.630 0.00 0.00 0.00 3.67
333 334 9.072294 CCTTTTTAGTTTGCGTATAAGATTTGG 57.928 33.333 0.00 0.00 0.00 3.28
334 335 9.834628 TCCTTTTTAGTTTGCGTATAAGATTTG 57.165 29.630 0.00 0.00 0.00 2.32
336 337 9.836076 GTTCCTTTTTAGTTTGCGTATAAGATT 57.164 29.630 0.00 0.00 0.00 2.40
337 338 9.005777 TGTTCCTTTTTAGTTTGCGTATAAGAT 57.994 29.630 0.00 0.00 0.00 2.40
338 339 8.380743 TGTTCCTTTTTAGTTTGCGTATAAGA 57.619 30.769 0.00 0.00 0.00 2.10
339 340 8.500773 TCTGTTCCTTTTTAGTTTGCGTATAAG 58.499 33.333 0.00 0.00 0.00 1.73
340 341 8.380743 TCTGTTCCTTTTTAGTTTGCGTATAA 57.619 30.769 0.00 0.00 0.00 0.98
341 342 7.874016 TCTCTGTTCCTTTTTAGTTTGCGTATA 59.126 33.333 0.00 0.00 0.00 1.47
342 343 6.708949 TCTCTGTTCCTTTTTAGTTTGCGTAT 59.291 34.615 0.00 0.00 0.00 3.06
343 344 6.050432 TCTCTGTTCCTTTTTAGTTTGCGTA 58.950 36.000 0.00 0.00 0.00 4.42
344 345 4.879545 TCTCTGTTCCTTTTTAGTTTGCGT 59.120 37.500 0.00 0.00 0.00 5.24
345 346 5.418310 TCTCTGTTCCTTTTTAGTTTGCG 57.582 39.130 0.00 0.00 0.00 4.85
346 347 7.258441 ACTTTCTCTGTTCCTTTTTAGTTTGC 58.742 34.615 0.00 0.00 0.00 3.68
386 387 7.569043 CGCATGCAACACTAATTCAAATTTTGA 60.569 33.333 19.57 7.74 38.04 2.69
387 388 6.517034 CGCATGCAACACTAATTCAAATTTTG 59.483 34.615 19.57 2.59 0.00 2.44
388 389 6.592166 CGCATGCAACACTAATTCAAATTTT 58.408 32.000 19.57 0.00 0.00 1.82
389 390 5.389725 GCGCATGCAACACTAATTCAAATTT 60.390 36.000 19.57 0.00 42.15 1.82
390 391 4.091800 GCGCATGCAACACTAATTCAAATT 59.908 37.500 19.57 0.00 42.15 1.82
391 392 3.613737 GCGCATGCAACACTAATTCAAAT 59.386 39.130 19.57 0.00 42.15 2.32
392 393 2.985809 GCGCATGCAACACTAATTCAAA 59.014 40.909 19.57 0.00 42.15 2.69
393 394 2.594321 GCGCATGCAACACTAATTCAA 58.406 42.857 19.57 0.00 42.15 2.69
394 395 1.465521 CGCGCATGCAACACTAATTCA 60.466 47.619 19.57 0.00 42.97 2.57
395 396 1.182673 CGCGCATGCAACACTAATTC 58.817 50.000 19.57 0.00 42.97 2.17
396 397 0.798009 GCGCGCATGCAACACTAATT 60.798 50.000 29.10 0.00 42.97 1.40
397 398 1.226379 GCGCGCATGCAACACTAAT 60.226 52.632 29.10 0.00 42.97 1.73
398 399 1.016653 TAGCGCGCATGCAACACTAA 61.017 50.000 35.10 0.01 42.97 2.24
399 400 0.809636 ATAGCGCGCATGCAACACTA 60.810 50.000 35.10 13.84 42.97 2.74
400 401 1.647545 AATAGCGCGCATGCAACACT 61.648 50.000 35.10 11.76 42.97 3.55
401 402 0.798009 AAATAGCGCGCATGCAACAC 60.798 50.000 35.10 2.87 42.97 3.32
402 403 0.797629 CAAATAGCGCGCATGCAACA 60.798 50.000 35.10 9.00 42.97 3.33
403 404 0.523125 TCAAATAGCGCGCATGCAAC 60.523 50.000 35.10 8.14 42.97 4.17
404 405 0.381445 ATCAAATAGCGCGCATGCAA 59.619 45.000 35.10 14.22 42.97 4.08
405 406 0.041047 GATCAAATAGCGCGCATGCA 60.041 50.000 35.10 15.63 42.97 3.96
406 407 1.056464 CGATCAAATAGCGCGCATGC 61.056 55.000 35.10 7.91 37.91 4.06
407 408 0.233074 ACGATCAAATAGCGCGCATG 59.767 50.000 35.10 24.41 41.86 4.06
408 409 0.233074 CACGATCAAATAGCGCGCAT 59.767 50.000 35.10 21.19 41.86 4.73
409 410 1.635810 CACGATCAAATAGCGCGCA 59.364 52.632 35.10 19.76 41.86 6.09
410 411 1.719085 GCACGATCAAATAGCGCGC 60.719 57.895 26.66 26.66 41.86 6.86
411 412 1.435488 CGCACGATCAAATAGCGCG 60.435 57.895 0.00 0.00 41.86 6.86
412 413 1.083401 CCGCACGATCAAATAGCGC 60.083 57.895 0.00 0.00 46.33 5.92
414 415 1.571919 AGTCCGCACGATCAAATAGC 58.428 50.000 0.00 0.00 0.00 2.97
415 416 5.712217 TTAAAGTCCGCACGATCAAATAG 57.288 39.130 0.00 0.00 0.00 1.73
416 417 6.483385 TTTTAAAGTCCGCACGATCAAATA 57.517 33.333 0.00 0.00 0.00 1.40
417 418 5.365403 TTTTAAAGTCCGCACGATCAAAT 57.635 34.783 0.00 0.00 0.00 2.32
418 419 4.815040 TTTTAAAGTCCGCACGATCAAA 57.185 36.364 0.00 0.00 0.00 2.69
419 420 4.815040 TTTTTAAAGTCCGCACGATCAA 57.185 36.364 0.00 0.00 0.00 2.57
437 438 4.476479 AGACATCTAGGCTCCCTCATTTTT 59.524 41.667 0.00 0.00 34.61 1.94
438 439 4.043596 AGACATCTAGGCTCCCTCATTTT 58.956 43.478 0.00 0.00 34.61 1.82
439 440 3.390639 CAGACATCTAGGCTCCCTCATTT 59.609 47.826 0.00 0.00 34.61 2.32
440 441 2.971330 CAGACATCTAGGCTCCCTCATT 59.029 50.000 0.00 0.00 34.61 2.57
441 442 2.607499 CAGACATCTAGGCTCCCTCAT 58.393 52.381 0.00 0.00 34.61 2.90
442 443 1.412217 CCAGACATCTAGGCTCCCTCA 60.412 57.143 0.00 0.00 34.61 3.86
443 444 1.133325 TCCAGACATCTAGGCTCCCTC 60.133 57.143 0.00 0.00 34.61 4.30
444 445 0.937441 TCCAGACATCTAGGCTCCCT 59.063 55.000 0.00 0.00 37.71 4.20
445 446 1.622811 CATCCAGACATCTAGGCTCCC 59.377 57.143 0.00 0.00 27.44 4.30
446 447 2.324541 ACATCCAGACATCTAGGCTCC 58.675 52.381 0.00 0.00 27.44 4.70
447 448 4.620332 GCATACATCCAGACATCTAGGCTC 60.620 50.000 0.00 0.00 27.44 4.70
448 449 3.260380 GCATACATCCAGACATCTAGGCT 59.740 47.826 0.00 0.00 33.98 4.58
449 450 3.007290 TGCATACATCCAGACATCTAGGC 59.993 47.826 0.00 0.00 0.00 3.93
450 451 4.879197 TGCATACATCCAGACATCTAGG 57.121 45.455 0.00 0.00 0.00 3.02
451 452 5.851720 AGTTGCATACATCCAGACATCTAG 58.148 41.667 0.00 0.00 0.00 2.43
452 453 5.876651 AGTTGCATACATCCAGACATCTA 57.123 39.130 0.00 0.00 0.00 1.98
453 454 4.767578 AGTTGCATACATCCAGACATCT 57.232 40.909 0.00 0.00 0.00 2.90
454 455 6.226052 TCATAGTTGCATACATCCAGACATC 58.774 40.000 0.00 0.00 0.00 3.06
455 456 6.178607 TCATAGTTGCATACATCCAGACAT 57.821 37.500 0.00 0.00 0.00 3.06
456 457 5.612725 TCATAGTTGCATACATCCAGACA 57.387 39.130 0.00 0.00 0.00 3.41
457 458 6.072838 CCAATCATAGTTGCATACATCCAGAC 60.073 42.308 0.00 0.00 0.00 3.51
458 459 5.999600 CCAATCATAGTTGCATACATCCAGA 59.000 40.000 0.00 0.00 0.00 3.86
459 460 5.999600 TCCAATCATAGTTGCATACATCCAG 59.000 40.000 0.00 0.00 0.00 3.86
460 461 5.939447 TCCAATCATAGTTGCATACATCCA 58.061 37.500 0.00 0.00 0.00 3.41
461 462 6.656270 TCATCCAATCATAGTTGCATACATCC 59.344 38.462 0.00 0.00 0.00 3.51
462 463 7.524912 GTCATCCAATCATAGTTGCATACATC 58.475 38.462 0.00 0.00 0.00 3.06
463 464 6.148315 CGTCATCCAATCATAGTTGCATACAT 59.852 38.462 0.00 0.00 0.00 2.29
464 465 5.466393 CGTCATCCAATCATAGTTGCATACA 59.534 40.000 0.00 0.00 0.00 2.29
465 466 5.106948 CCGTCATCCAATCATAGTTGCATAC 60.107 44.000 0.00 0.00 0.00 2.39
466 467 4.996758 CCGTCATCCAATCATAGTTGCATA 59.003 41.667 0.00 0.00 0.00 3.14
467 468 3.817084 CCGTCATCCAATCATAGTTGCAT 59.183 43.478 0.00 0.00 0.00 3.96
468 469 3.205338 CCGTCATCCAATCATAGTTGCA 58.795 45.455 0.00 0.00 0.00 4.08
469 470 3.206150 ACCGTCATCCAATCATAGTTGC 58.794 45.455 0.00 0.00 0.00 4.17
470 471 4.697514 AGACCGTCATCCAATCATAGTTG 58.302 43.478 0.40 0.00 0.00 3.16
471 472 4.202264 GGAGACCGTCATCCAATCATAGTT 60.202 45.833 0.40 0.00 35.54 2.24
472 473 3.322254 GGAGACCGTCATCCAATCATAGT 59.678 47.826 0.40 0.00 35.54 2.12
473 474 3.306364 GGGAGACCGTCATCCAATCATAG 60.306 52.174 14.98 0.00 43.64 2.23
474 475 2.632996 GGGAGACCGTCATCCAATCATA 59.367 50.000 14.98 0.00 43.64 2.15
475 476 1.417890 GGGAGACCGTCATCCAATCAT 59.582 52.381 14.98 0.00 43.64 2.45
476 477 0.830648 GGGAGACCGTCATCCAATCA 59.169 55.000 14.98 0.00 43.64 2.57
477 478 3.688553 GGGAGACCGTCATCCAATC 57.311 57.895 14.98 0.00 43.64 2.67
504 505 1.238625 TTTCGCATTTGTCCGGGGAC 61.239 55.000 10.95 10.95 44.77 4.46
505 506 0.958382 CTTTCGCATTTGTCCGGGGA 60.958 55.000 0.00 0.00 0.00 4.81
506 507 0.958382 TCTTTCGCATTTGTCCGGGG 60.958 55.000 0.00 0.00 0.00 5.73
507 508 0.878416 TTCTTTCGCATTTGTCCGGG 59.122 50.000 0.00 0.00 0.00 5.73
508 509 2.697431 TTTCTTTCGCATTTGTCCGG 57.303 45.000 0.00 0.00 0.00 5.14
509 510 5.574815 AAATTTTCTTTCGCATTTGTCCG 57.425 34.783 0.00 0.00 0.00 4.79
510 511 6.399564 CCGTAAATTTTCTTTCGCATTTGTCC 60.400 38.462 0.00 0.00 0.00 4.02
511 512 6.361214 TCCGTAAATTTTCTTTCGCATTTGTC 59.639 34.615 0.00 0.00 0.00 3.18
512 513 6.210078 TCCGTAAATTTTCTTTCGCATTTGT 58.790 32.000 0.00 0.00 0.00 2.83
513 514 6.683090 TCCGTAAATTTTCTTTCGCATTTG 57.317 33.333 0.00 0.00 0.00 2.32
514 515 7.883229 AATCCGTAAATTTTCTTTCGCATTT 57.117 28.000 0.00 0.00 0.00 2.32
515 516 7.486870 GGTAATCCGTAAATTTTCTTTCGCATT 59.513 33.333 0.00 0.00 0.00 3.56
516 517 6.970613 GGTAATCCGTAAATTTTCTTTCGCAT 59.029 34.615 0.00 0.00 0.00 4.73
517 518 6.316319 GGTAATCCGTAAATTTTCTTTCGCA 58.684 36.000 0.00 0.00 0.00 5.10
518 519 6.785633 GGTAATCCGTAAATTTTCTTTCGC 57.214 37.500 0.00 0.00 0.00 4.70
534 535 2.484889 GAGCATCTCCAACGGTAATCC 58.515 52.381 0.00 0.00 0.00 3.01
547 548 7.556635 GGTAAATTAAACCTGGTTAGAGCATCT 59.443 37.037 13.37 0.00 40.77 2.90
548 549 7.201794 GGGTAAATTAAACCTGGTTAGAGCATC 60.202 40.741 13.37 2.52 37.18 3.91
549 550 6.605995 GGGTAAATTAAACCTGGTTAGAGCAT 59.394 38.462 13.37 0.00 37.18 3.79
550 551 5.947566 GGGTAAATTAAACCTGGTTAGAGCA 59.052 40.000 13.37 0.00 37.18 4.26
551 552 5.359009 GGGGTAAATTAAACCTGGTTAGAGC 59.641 44.000 13.37 4.55 37.18 4.09
552 553 6.602009 CAGGGGTAAATTAAACCTGGTTAGAG 59.398 42.308 13.37 0.00 43.80 2.43
553 554 6.275144 TCAGGGGTAAATTAAACCTGGTTAGA 59.725 38.462 13.37 4.88 46.67 2.10
554 555 6.486941 TCAGGGGTAAATTAAACCTGGTTAG 58.513 40.000 13.37 0.66 46.67 2.34
555 556 6.045813 ACTCAGGGGTAAATTAAACCTGGTTA 59.954 38.462 13.37 0.00 46.67 2.85
556 557 5.162914 ACTCAGGGGTAAATTAAACCTGGTT 60.163 40.000 18.26 6.18 46.67 3.67
557 558 4.355889 ACTCAGGGGTAAATTAAACCTGGT 59.644 41.667 18.26 13.83 46.67 4.00
558 559 4.930696 ACTCAGGGGTAAATTAAACCTGG 58.069 43.478 18.26 13.39 46.67 4.45
560 561 7.302948 AGAAAACTCAGGGGTAAATTAAACCT 58.697 34.615 9.19 0.00 37.18 3.50
561 562 7.534723 AGAAAACTCAGGGGTAAATTAAACC 57.465 36.000 1.95 1.95 36.19 3.27
562 563 9.256477 CAAAGAAAACTCAGGGGTAAATTAAAC 57.744 33.333 0.00 0.00 0.00 2.01
563 564 8.983789 ACAAAGAAAACTCAGGGGTAAATTAAA 58.016 29.630 0.00 0.00 0.00 1.52
564 565 8.541899 ACAAAGAAAACTCAGGGGTAAATTAA 57.458 30.769 0.00 0.00 0.00 1.40
565 566 9.816787 ATACAAAGAAAACTCAGGGGTAAATTA 57.183 29.630 0.00 0.00 0.00 1.40
566 567 8.721133 ATACAAAGAAAACTCAGGGGTAAATT 57.279 30.769 0.00 0.00 0.00 1.82
567 568 7.396339 GGATACAAAGAAAACTCAGGGGTAAAT 59.604 37.037 0.00 0.00 0.00 1.40
568 569 6.717997 GGATACAAAGAAAACTCAGGGGTAAA 59.282 38.462 0.00 0.00 0.00 2.01
569 570 6.045106 AGGATACAAAGAAAACTCAGGGGTAA 59.955 38.462 0.00 0.00 41.41 2.85
570 571 5.550403 AGGATACAAAGAAAACTCAGGGGTA 59.450 40.000 0.00 0.00 41.41 3.69
571 572 4.354087 AGGATACAAAGAAAACTCAGGGGT 59.646 41.667 0.00 0.00 41.41 4.95
572 573 4.923415 AGGATACAAAGAAAACTCAGGGG 58.077 43.478 0.00 0.00 41.41 4.79
573 574 6.241645 AGAAGGATACAAAGAAAACTCAGGG 58.758 40.000 0.00 0.00 41.41 4.45
574 575 7.751768 AAGAAGGATACAAAGAAAACTCAGG 57.248 36.000 0.00 0.00 41.41 3.86
575 576 8.624776 ACAAAGAAGGATACAAAGAAAACTCAG 58.375 33.333 0.00 0.00 41.41 3.35
576 577 8.519799 ACAAAGAAGGATACAAAGAAAACTCA 57.480 30.769 0.00 0.00 41.41 3.41
582 583 8.626526 GGTTGTTACAAAGAAGGATACAAAGAA 58.373 33.333 0.00 0.00 41.41 2.52
583 584 7.776030 TGGTTGTTACAAAGAAGGATACAAAGA 59.224 33.333 0.00 0.00 41.41 2.52
584 585 7.936584 TGGTTGTTACAAAGAAGGATACAAAG 58.063 34.615 0.00 0.00 41.41 2.77
585 586 7.883391 TGGTTGTTACAAAGAAGGATACAAA 57.117 32.000 0.00 0.00 41.41 2.83
586 587 7.339721 TGTTGGTTGTTACAAAGAAGGATACAA 59.660 33.333 0.00 0.00 41.41 2.41
587 588 6.829298 TGTTGGTTGTTACAAAGAAGGATACA 59.171 34.615 0.00 0.00 41.41 2.29
588 589 7.266922 TGTTGGTTGTTACAAAGAAGGATAC 57.733 36.000 0.00 0.00 0.00 2.24
589 590 7.558444 AGTTGTTGGTTGTTACAAAGAAGGATA 59.442 33.333 0.00 0.00 36.15 2.59
590 591 6.379988 AGTTGTTGGTTGTTACAAAGAAGGAT 59.620 34.615 0.00 0.00 36.15 3.24
591 592 5.712917 AGTTGTTGGTTGTTACAAAGAAGGA 59.287 36.000 0.00 0.00 36.15 3.36
592 593 5.961272 AGTTGTTGGTTGTTACAAAGAAGG 58.039 37.500 0.00 0.00 36.15 3.46
593 594 8.402472 TCATAGTTGTTGGTTGTTACAAAGAAG 58.598 33.333 0.00 0.00 36.15 2.85
594 595 8.282455 TCATAGTTGTTGGTTGTTACAAAGAA 57.718 30.769 0.00 0.00 36.15 2.52
595 596 7.554835 ACTCATAGTTGTTGGTTGTTACAAAGA 59.445 33.333 0.00 0.00 36.15 2.52
596 597 7.703328 ACTCATAGTTGTTGGTTGTTACAAAG 58.297 34.615 0.00 0.00 36.15 2.77
597 598 7.633193 ACTCATAGTTGTTGGTTGTTACAAA 57.367 32.000 0.00 0.00 36.15 2.83
598 599 7.633193 AACTCATAGTTGTTGGTTGTTACAA 57.367 32.000 0.00 0.00 37.00 2.41
599 600 7.633193 AAACTCATAGTTGTTGGTTGTTACA 57.367 32.000 0.00 0.00 38.66 2.41
607 608 9.774742 GCTCTTATTAAAACTCATAGTTGTTGG 57.225 33.333 0.00 0.00 38.66 3.77
610 611 9.167311 CCAGCTCTTATTAAAACTCATAGTTGT 57.833 33.333 0.00 0.00 38.66 3.32
611 612 8.616076 CCCAGCTCTTATTAAAACTCATAGTTG 58.384 37.037 0.00 0.00 38.66 3.16
612 613 7.283354 GCCCAGCTCTTATTAAAACTCATAGTT 59.717 37.037 0.00 0.00 40.80 2.24
613 614 6.768381 GCCCAGCTCTTATTAAAACTCATAGT 59.232 38.462 0.00 0.00 0.00 2.12
614 615 6.995091 AGCCCAGCTCTTATTAAAACTCATAG 59.005 38.462 0.00 0.00 30.62 2.23
615 616 6.900194 AGCCCAGCTCTTATTAAAACTCATA 58.100 36.000 0.00 0.00 30.62 2.15
616 617 5.760131 AGCCCAGCTCTTATTAAAACTCAT 58.240 37.500 0.00 0.00 30.62 2.90
617 618 5.179452 AGCCCAGCTCTTATTAAAACTCA 57.821 39.130 0.00 0.00 30.62 3.41
618 619 6.113411 TGTAGCCCAGCTCTTATTAAAACTC 58.887 40.000 0.00 0.00 40.44 3.01
619 620 6.062258 TGTAGCCCAGCTCTTATTAAAACT 57.938 37.500 0.00 0.00 40.44 2.66
620 621 6.542370 TCATGTAGCCCAGCTCTTATTAAAAC 59.458 38.462 0.00 0.00 40.44 2.43
621 622 6.658849 TCATGTAGCCCAGCTCTTATTAAAA 58.341 36.000 0.00 0.00 40.44 1.52
622 623 6.247229 TCATGTAGCCCAGCTCTTATTAAA 57.753 37.500 0.00 0.00 40.44 1.52
623 624 5.221722 CCTCATGTAGCCCAGCTCTTATTAA 60.222 44.000 0.00 0.00 40.44 1.40
624 625 4.284490 CCTCATGTAGCCCAGCTCTTATTA 59.716 45.833 0.00 0.00 40.44 0.98
625 626 3.072184 CCTCATGTAGCCCAGCTCTTATT 59.928 47.826 0.00 0.00 40.44 1.40
626 627 2.636893 CCTCATGTAGCCCAGCTCTTAT 59.363 50.000 0.00 0.00 40.44 1.73
627 628 2.042464 CCTCATGTAGCCCAGCTCTTA 58.958 52.381 0.00 0.00 40.44 2.10
628 629 0.835941 CCTCATGTAGCCCAGCTCTT 59.164 55.000 0.00 0.00 40.44 2.85
629 630 1.694133 GCCTCATGTAGCCCAGCTCT 61.694 60.000 0.00 0.00 40.44 4.09
630 631 1.227793 GCCTCATGTAGCCCAGCTC 60.228 63.158 0.00 0.00 40.44 4.09
631 632 1.997311 TGCCTCATGTAGCCCAGCT 60.997 57.895 7.16 0.00 43.41 4.24
632 633 1.821332 GTGCCTCATGTAGCCCAGC 60.821 63.158 7.16 0.00 0.00 4.85
633 634 1.153086 GGTGCCTCATGTAGCCCAG 60.153 63.158 7.16 0.00 0.00 4.45
634 635 2.998097 GGTGCCTCATGTAGCCCA 59.002 61.111 7.16 0.00 0.00 5.36
635 636 2.203070 CGGTGCCTCATGTAGCCC 60.203 66.667 7.16 7.05 0.00 5.19
636 637 2.203070 CCGGTGCCTCATGTAGCC 60.203 66.667 0.00 0.28 0.00 3.93
637 638 1.227380 CTCCGGTGCCTCATGTAGC 60.227 63.158 0.00 0.00 0.00 3.58
638 639 0.824109 TTCTCCGGTGCCTCATGTAG 59.176 55.000 0.00 0.00 0.00 2.74
639 640 0.824109 CTTCTCCGGTGCCTCATGTA 59.176 55.000 0.00 0.00 0.00 2.29
640 641 0.904865 TCTTCTCCGGTGCCTCATGT 60.905 55.000 0.00 0.00 0.00 3.21
641 642 0.179089 CTCTTCTCCGGTGCCTCATG 60.179 60.000 0.00 0.00 0.00 3.07
642 643 0.324738 TCTCTTCTCCGGTGCCTCAT 60.325 55.000 0.00 0.00 0.00 2.90
643 644 0.324738 ATCTCTTCTCCGGTGCCTCA 60.325 55.000 0.00 0.00 0.00 3.86
644 645 1.693627 TATCTCTTCTCCGGTGCCTC 58.306 55.000 0.00 0.00 0.00 4.70
645 646 2.160721 TTATCTCTTCTCCGGTGCCT 57.839 50.000 0.00 0.00 0.00 4.75
646 647 2.981859 TTTATCTCTTCTCCGGTGCC 57.018 50.000 0.00 0.00 0.00 5.01
647 648 2.609916 GCTTTTATCTCTTCTCCGGTGC 59.390 50.000 0.00 0.00 0.00 5.01
648 649 3.861840 TGCTTTTATCTCTTCTCCGGTG 58.138 45.455 0.00 0.00 0.00 4.94
649 650 4.553330 TTGCTTTTATCTCTTCTCCGGT 57.447 40.909 0.00 0.00 0.00 5.28
650 651 5.880054 TTTTGCTTTTATCTCTTCTCCGG 57.120 39.130 0.00 0.00 0.00 5.14
670 671 6.183360 TGTGTGCTGTTGGTGTATACATTTTT 60.183 34.615 9.18 0.00 0.00 1.94
671 672 5.300539 TGTGTGCTGTTGGTGTATACATTTT 59.699 36.000 9.18 0.00 0.00 1.82
672 673 4.824537 TGTGTGCTGTTGGTGTATACATTT 59.175 37.500 9.18 0.00 0.00 2.32
673 674 4.393834 TGTGTGCTGTTGGTGTATACATT 58.606 39.130 9.18 0.00 0.00 2.71
674 675 4.014569 TGTGTGCTGTTGGTGTATACAT 57.985 40.909 9.18 0.00 0.00 2.29
675 676 3.477210 TGTGTGCTGTTGGTGTATACA 57.523 42.857 0.08 0.08 0.00 2.29
676 677 4.034048 GCTATGTGTGCTGTTGGTGTATAC 59.966 45.833 0.00 0.00 0.00 1.47
677 678 4.188462 GCTATGTGTGCTGTTGGTGTATA 58.812 43.478 0.00 0.00 0.00 1.47
678 679 3.009723 GCTATGTGTGCTGTTGGTGTAT 58.990 45.455 0.00 0.00 0.00 2.29
679 680 2.224402 TGCTATGTGTGCTGTTGGTGTA 60.224 45.455 0.00 0.00 0.00 2.90
680 681 1.238439 GCTATGTGTGCTGTTGGTGT 58.762 50.000 0.00 0.00 0.00 4.16
681 682 1.237533 TGCTATGTGTGCTGTTGGTG 58.762 50.000 0.00 0.00 0.00 4.17
682 683 2.205022 ATGCTATGTGTGCTGTTGGT 57.795 45.000 0.00 0.00 0.00 3.67
683 684 3.534554 TCTATGCTATGTGTGCTGTTGG 58.465 45.455 0.00 0.00 0.00 3.77
684 685 4.436332 TCTCTATGCTATGTGTGCTGTTG 58.564 43.478 0.00 0.00 0.00 3.33
685 686 4.743057 TCTCTATGCTATGTGTGCTGTT 57.257 40.909 0.00 0.00 0.00 3.16
686 687 4.743057 TTCTCTATGCTATGTGTGCTGT 57.257 40.909 0.00 0.00 0.00 4.40
687 688 4.872124 TGTTTCTCTATGCTATGTGTGCTG 59.128 41.667 0.00 0.00 0.00 4.41
688 689 5.089970 TGTTTCTCTATGCTATGTGTGCT 57.910 39.130 0.00 0.00 0.00 4.40
689 690 5.801350 TTGTTTCTCTATGCTATGTGTGC 57.199 39.130 0.00 0.00 0.00 4.57
690 691 6.183360 CCCTTTGTTTCTCTATGCTATGTGTG 60.183 42.308 0.00 0.00 0.00 3.82
691 692 5.882557 CCCTTTGTTTCTCTATGCTATGTGT 59.117 40.000 0.00 0.00 0.00 3.72
692 693 5.297776 CCCCTTTGTTTCTCTATGCTATGTG 59.702 44.000 0.00 0.00 0.00 3.21
693 694 5.440610 CCCCTTTGTTTCTCTATGCTATGT 58.559 41.667 0.00 0.00 0.00 2.29
694 695 4.823989 CCCCCTTTGTTTCTCTATGCTATG 59.176 45.833 0.00 0.00 0.00 2.23
695 696 5.053978 CCCCCTTTGTTTCTCTATGCTAT 57.946 43.478 0.00 0.00 0.00 2.97
696 697 4.503714 CCCCCTTTGTTTCTCTATGCTA 57.496 45.455 0.00 0.00 0.00 3.49
697 698 3.372440 CCCCCTTTGTTTCTCTATGCT 57.628 47.619 0.00 0.00 0.00 3.79
714 715 1.040339 TGCTGTGTTGTGTTTCCCCC 61.040 55.000 0.00 0.00 0.00 5.40
715 716 0.820871 TTGCTGTGTTGTGTTTCCCC 59.179 50.000 0.00 0.00 0.00 4.81
716 717 2.165437 TCTTTGCTGTGTTGTGTTTCCC 59.835 45.455 0.00 0.00 0.00 3.97
717 718 3.438360 CTCTTTGCTGTGTTGTGTTTCC 58.562 45.455 0.00 0.00 0.00 3.13
718 719 2.854185 GCTCTTTGCTGTGTTGTGTTTC 59.146 45.455 0.00 0.00 38.95 2.78
719 720 2.230992 TGCTCTTTGCTGTGTTGTGTTT 59.769 40.909 0.00 0.00 43.37 2.83
720 721 1.818060 TGCTCTTTGCTGTGTTGTGTT 59.182 42.857 0.00 0.00 43.37 3.32
721 722 1.133025 GTGCTCTTTGCTGTGTTGTGT 59.867 47.619 0.00 0.00 43.37 3.72
722 723 1.534595 GGTGCTCTTTGCTGTGTTGTG 60.535 52.381 0.00 0.00 43.37 3.33
723 724 0.740737 GGTGCTCTTTGCTGTGTTGT 59.259 50.000 0.00 0.00 43.37 3.32
724 725 0.317269 CGGTGCTCTTTGCTGTGTTG 60.317 55.000 0.00 0.00 43.37 3.33
725 726 0.748005 ACGGTGCTCTTTGCTGTGTT 60.748 50.000 0.00 0.00 43.37 3.32
726 727 1.153168 ACGGTGCTCTTTGCTGTGT 60.153 52.632 0.00 0.00 43.37 3.72
727 728 1.280746 CACGGTGCTCTTTGCTGTG 59.719 57.895 0.00 0.00 43.37 3.66
728 729 1.893808 CCACGGTGCTCTTTGCTGT 60.894 57.895 1.68 0.00 43.37 4.40
729 730 2.620112 CCCACGGTGCTCTTTGCTG 61.620 63.158 1.68 0.00 43.37 4.41
730 731 2.281761 CCCACGGTGCTCTTTGCT 60.282 61.111 1.68 0.00 43.37 3.91
731 732 4.043200 GCCCACGGTGCTCTTTGC 62.043 66.667 1.68 0.00 43.25 3.68
732 733 1.733402 TTTGCCCACGGTGCTCTTTG 61.733 55.000 1.68 0.00 0.00 2.77
772 773 2.014128 AGTGTGTTGGTTTTGGTCTCG 58.986 47.619 0.00 0.00 0.00 4.04
784 785 2.708514 CTTCGACAAAGCAGTGTGTTG 58.291 47.619 0.00 6.43 0.00 3.33
795 796 4.450757 TCTCGATTGAATTGCTTCGACAAA 59.549 37.500 0.00 0.00 35.85 2.83
797 798 3.367932 GTCTCGATTGAATTGCTTCGACA 59.632 43.478 0.00 0.00 35.85 4.35
803 804 2.417933 GTGCAGTCTCGATTGAATTGCT 59.582 45.455 11.92 0.00 33.08 3.91
889 921 1.707989 TGGCTCCCCACAAGTAAATCA 59.292 47.619 0.00 0.00 35.79 2.57
890 922 2.507407 TGGCTCCCCACAAGTAAATC 57.493 50.000 0.00 0.00 35.79 2.17
900 932 1.426251 ATGTTGTCTGTGGCTCCCCA 61.426 55.000 0.00 0.00 39.32 4.96
964 996 1.099689 GCCTGCCGGTTTATAAAGCA 58.900 50.000 23.22 16.26 36.24 3.91
1156 1194 2.244117 ATCACGGCCGCAGAAGACAT 62.244 55.000 28.58 5.17 0.00 3.06
1178 1216 1.884579 AGAAGTAGACCAGAAACGCGA 59.115 47.619 15.93 0.00 0.00 5.87
1352 1393 3.884895 CCATTACTACATGGCACCAGAA 58.115 45.455 0.00 0.00 37.51 3.02
1361 1402 4.955925 TTTGGAACGCCATTACTACATG 57.044 40.909 0.00 0.00 45.46 3.21
1362 1403 4.762765 TGTTTTGGAACGCCATTACTACAT 59.237 37.500 0.00 0.00 45.46 2.29
1363 1404 4.135306 TGTTTTGGAACGCCATTACTACA 58.865 39.130 0.00 0.00 45.46 2.74
1364 1405 4.752661 TGTTTTGGAACGCCATTACTAC 57.247 40.909 0.00 0.00 45.46 2.73
1366 1407 4.173036 CATGTTTTGGAACGCCATTACT 57.827 40.909 0.00 0.00 45.46 2.24
1559 1621 4.065281 GGACCACGTGGAGTCCCG 62.065 72.222 40.21 12.94 45.76 5.14
1654 1716 3.414700 CTGTCCACCAGCGCGTTC 61.415 66.667 8.43 0.00 33.59 3.95
2120 2182 4.767255 CCTGTCCTCCAGCGCCAC 62.767 72.222 2.29 0.00 40.06 5.01
2389 2451 2.503382 GGCGATCTCCACCTCCTCC 61.503 68.421 0.00 0.00 0.00 4.30
2766 2828 4.735132 CGTCGAAAGGCCTGGCGA 62.735 66.667 22.09 22.09 0.00 5.54
2789 2863 2.867975 CGTATCATGCTCATGCTTGTGA 59.132 45.455 5.04 0.17 42.66 3.58
2826 2900 1.040893 ACTCACAGACGGACACACCA 61.041 55.000 0.00 0.00 38.90 4.17
2834 2908 0.109365 CTCAGCTCACTCACAGACGG 60.109 60.000 0.00 0.00 0.00 4.79
2835 2909 0.595588 ACTCAGCTCACTCACAGACG 59.404 55.000 0.00 0.00 0.00 4.18
2958 3063 6.404734 CCAAGTTGAACACAAAAGAGCTAGTT 60.405 38.462 3.87 0.00 0.00 2.24
2959 3064 5.066505 CCAAGTTGAACACAAAAGAGCTAGT 59.933 40.000 3.87 0.00 0.00 2.57
2960 3065 5.296780 TCCAAGTTGAACACAAAAGAGCTAG 59.703 40.000 3.87 0.00 0.00 3.42
2974 3079 4.282449 TCGGACTGATAGTTCCAAGTTGAA 59.718 41.667 3.87 0.00 0.00 2.69
3031 4917 7.537715 CAGCACATTTACAACTTCCAATATCA 58.462 34.615 0.00 0.00 0.00 2.15
3089 4975 5.798125 TTGCAAATCAATTGACCTGGTAA 57.202 34.783 11.07 1.89 41.85 2.85
3090 4976 5.798125 TTTGCAAATCAATTGACCTGGTA 57.202 34.783 11.07 0.00 41.85 3.25
3091 4977 4.686191 TTTGCAAATCAATTGACCTGGT 57.314 36.364 11.07 0.00 41.85 4.00
3187 5073 8.850156 GTGCCAGTGTTTATCCATCTTATTAAT 58.150 33.333 0.00 0.00 0.00 1.40
3188 5074 8.052748 AGTGCCAGTGTTTATCCATCTTATTAA 58.947 33.333 0.00 0.00 0.00 1.40
3189 5075 7.498900 CAGTGCCAGTGTTTATCCATCTTATTA 59.501 37.037 0.00 0.00 0.00 0.98
3202 5091 3.149196 CATTCCTACAGTGCCAGTGTTT 58.851 45.455 10.99 0.00 33.15 2.83
3229 5118 5.841957 AAGTGAAGCAAGAAATCAAGTGT 57.158 34.783 0.00 0.00 0.00 3.55
3265 5157 0.241749 TGCTTGCATTTTCGAGCAGG 59.758 50.000 4.41 2.60 45.72 4.85
3269 5161 5.634896 AGTAGAATTGCTTGCATTTTCGAG 58.365 37.500 0.00 0.00 0.00 4.04
3291 5183 3.396260 TGGACTTCGGGACAAAACTAG 57.604 47.619 0.00 0.00 0.00 2.57
3307 5199 5.411083 GTCAAACTGAGAAGAAGTTGGAC 57.589 43.478 7.81 7.81 46.18 4.02
3310 5202 4.119862 TCGGTCAAACTGAGAAGAAGTTG 58.880 43.478 0.00 0.00 37.90 3.16
3374 5266 5.766150 TGTCACTTTGACCAAGTTTATGG 57.234 39.130 3.91 0.00 43.89 2.74
3580 5473 4.802876 AAGAGCACTCGTTCTTTCTTTG 57.197 40.909 0.00 0.00 39.42 2.77
3591 5484 1.229428 TTTGCCAGAAAGAGCACTCG 58.771 50.000 0.00 0.00 39.10 4.18
3642 5535 1.561643 ATTCTCTTCCTCCTCGTGCA 58.438 50.000 0.00 0.00 0.00 4.57
3762 5660 6.873605 CAGGATCACACACTTGTAAACTATGA 59.126 38.462 0.00 0.00 33.30 2.15
3989 5887 3.682858 GCACCAAAGTATTCGAGTGCTTA 59.317 43.478 11.43 0.00 41.86 3.09
4006 5904 1.255882 ATTCATTCGCCTTTGCACCA 58.744 45.000 0.00 0.00 37.32 4.17
4015 5913 5.107065 CCTTATCGGTTCTTATTCATTCGCC 60.107 44.000 0.00 0.00 0.00 5.54
4115 6014 2.030007 GCTTGGTTAGACATTTGCTGCA 60.030 45.455 0.00 0.00 0.00 4.41
4121 6020 5.507315 CCTTTCAACGCTTGGTTAGACATTT 60.507 40.000 0.00 0.00 36.49 2.32
4140 6039 4.470304 AGTAGGTGGTATTCAGGACCTTTC 59.530 45.833 0.00 0.00 39.59 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.