Multiple sequence alignment - TraesCS6A01G186200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G186200 chr6A 100.000 6348 0 0 1 6348 220742957 220736610 0.000000e+00 11723.0
1 TraesCS6A01G186200 chr6D 95.296 2955 67 18 636 3560 161359523 161356611 0.000000e+00 4621.0
2 TraesCS6A01G186200 chr6D 93.957 877 42 2 5483 6348 294967000 294966124 0.000000e+00 1315.0
3 TraesCS6A01G186200 chr6D 92.193 807 40 12 4676 5480 161356392 161355607 0.000000e+00 1120.0
4 TraesCS6A01G186200 chr6D 87.940 199 10 2 99 283 366684902 366684704 8.280000e-54 222.0
5 TraesCS6A01G186200 chr6D 94.253 87 3 2 4599 4683 161356622 161356536 1.440000e-26 132.0
6 TraesCS6A01G186200 chr6D 91.071 56 5 0 31 86 366684995 366684940 6.820000e-10 76.8
7 TraesCS6A01G186200 chr6B 95.729 1920 40 10 653 2540 291068086 291066177 0.000000e+00 3053.0
8 TraesCS6A01G186200 chr6B 89.929 844 44 14 4602 5442 291065143 291064338 0.000000e+00 1050.0
9 TraesCS6A01G186200 chr6B 95.131 534 22 2 2540 3072 291066098 291065568 0.000000e+00 839.0
10 TraesCS6A01G186200 chr6B 91.557 533 35 4 114 639 657261184 657260655 0.000000e+00 726.0
11 TraesCS6A01G186200 chr6B 87.905 463 32 12 3099 3560 291065575 291065136 2.030000e-144 523.0
12 TraesCS6A01G186200 chr6B 83.443 610 51 20 86 645 495540962 495540353 7.290000e-144 521.0
13 TraesCS6A01G186200 chr6B 74.465 795 178 18 5483 6260 519799663 519800449 2.860000e-83 320.0
14 TraesCS6A01G186200 chr6B 72.717 865 200 28 5474 6315 658198655 658199506 2.270000e-64 257.0
15 TraesCS6A01G186200 chr6B 86.432 199 13 2 99 283 552405784 552405586 8.340000e-49 206.0
16 TraesCS6A01G186200 chr6B 70.875 800 199 27 5483 6260 703201640 703200853 8.520000e-34 156.0
17 TraesCS6A01G186200 chr2D 89.296 1037 96 14 3565 4590 20063385 20062353 0.000000e+00 1286.0
18 TraesCS6A01G186200 chr2D 87.344 1043 112 15 3565 4590 276935690 276936729 0.000000e+00 1177.0
19 TraesCS6A01G186200 chr2D 87.283 1038 116 15 3565 4590 445184783 445183750 0.000000e+00 1171.0
20 TraesCS6A01G186200 chr2D 90.814 479 30 3 172 637 577074236 577074713 4.180000e-176 628.0
21 TraesCS6A01G186200 chr2D 90.356 477 36 7 172 639 453547625 453548100 9.040000e-173 617.0
22 TraesCS6A01G186200 chr3A 92.948 865 48 4 5483 6335 572946356 572947219 0.000000e+00 1247.0
23 TraesCS6A01G186200 chr5A 88.116 1035 109 11 3565 4590 544537116 544536087 0.000000e+00 1218.0
24 TraesCS6A01G186200 chr5A 91.450 538 35 6 114 644 600294133 600293600 0.000000e+00 728.0
25 TraesCS6A01G186200 chr7A 88.144 1029 112 8 3568 4588 9823847 9822821 0.000000e+00 1216.0
26 TraesCS6A01G186200 chr7A 92.000 550 32 9 114 655 717181557 717182102 0.000000e+00 761.0
27 TraesCS6A01G186200 chr4D 87.464 1037 116 14 3565 4590 405710415 405709382 0.000000e+00 1182.0
28 TraesCS6A01G186200 chr7D 87.165 1044 113 13 3565 4590 145918989 145920029 0.000000e+00 1166.0
29 TraesCS6A01G186200 chr7D 87.053 1035 122 11 3565 4590 598309700 598310731 0.000000e+00 1158.0
30 TraesCS6A01G186200 chr7D 91.134 485 32 5 172 646 472086586 472087069 0.000000e+00 647.0
31 TraesCS6A01G186200 chr7D 77.449 878 173 12 5483 6346 11614559 11615425 9.500000e-138 501.0
32 TraesCS6A01G186200 chr7D 79.638 221 37 6 419 637 579340323 579340537 1.100000e-32 152.0
33 TraesCS6A01G186200 chr5D 86.969 1036 123 11 3565 4590 14646479 14647512 0.000000e+00 1155.0
34 TraesCS6A01G186200 chr5D 92.290 441 28 6 172 611 387611845 387612280 6.990000e-174 621.0
35 TraesCS6A01G186200 chr1A 90.858 536 40 7 114 643 96740457 96739925 0.000000e+00 710.0
36 TraesCS6A01G186200 chr1D 91.221 467 35 5 172 637 237416271 237416732 1.160000e-176 630.0
37 TraesCS6A01G186200 chr1D 82.344 674 54 23 25 634 35863279 35862607 5.640000e-145 525.0
38 TraesCS6A01G186200 chr1D 75.691 181 33 10 463 637 27892600 27892425 5.280000e-11 80.5
39 TraesCS6A01G186200 chr4B 91.781 438 25 6 167 594 37175641 37176077 3.280000e-167 599.0
40 TraesCS6A01G186200 chr2B 83.589 652 68 17 25 639 5029233 5028584 5.520000e-160 575.0
41 TraesCS6A01G186200 chr1B 83.056 602 52 24 87 640 32787799 32788398 9.500000e-138 501.0
42 TraesCS6A01G186200 chr1B 73.001 863 201 24 5474 6315 398012024 398012875 2.250000e-69 274.0
43 TraesCS6A01G186200 chr1B 71.986 846 204 24 5483 6306 332834024 332834858 1.070000e-52 219.0
44 TraesCS6A01G186200 chr1B 80.392 102 13 6 407 503 144927826 144927727 3.180000e-08 71.3
45 TraesCS6A01G186200 chr3D 79.238 525 103 5 5825 6346 565809442 565808921 1.680000e-95 361.0
46 TraesCS6A01G186200 chr3D 75.714 490 115 4 5861 6348 122631972 122631485 6.360000e-60 243.0
47 TraesCS6A01G186200 chr3B 72.685 864 202 28 5474 6315 10673606 10674457 2.270000e-64 257.0
48 TraesCS6A01G186200 chr5B 72.153 887 215 24 5474 6339 15042078 15042953 2.290000e-59 241.0
49 TraesCS6A01G186200 chr7B 74.892 462 109 7 5881 6339 538695335 538694878 3.000000e-48 204.0
50 TraesCS6A01G186200 chr4A 76.230 244 41 9 5474 5704 664158838 664159077 5.200000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G186200 chr6A 220736610 220742957 6347 True 11723.000000 11723 100.0000 1 6348 1 chr6A.!!$R1 6347
1 TraesCS6A01G186200 chr6D 161355607 161359523 3916 True 1957.666667 4621 93.9140 636 5480 3 chr6D.!!$R2 4844
2 TraesCS6A01G186200 chr6D 294966124 294967000 876 True 1315.000000 1315 93.9570 5483 6348 1 chr6D.!!$R1 865
3 TraesCS6A01G186200 chr6B 291064338 291068086 3748 True 1366.250000 3053 92.1735 653 5442 4 chr6B.!!$R5 4789
4 TraesCS6A01G186200 chr6B 657260655 657261184 529 True 726.000000 726 91.5570 114 639 1 chr6B.!!$R3 525
5 TraesCS6A01G186200 chr6B 495540353 495540962 609 True 521.000000 521 83.4430 86 645 1 chr6B.!!$R1 559
6 TraesCS6A01G186200 chr6B 519799663 519800449 786 False 320.000000 320 74.4650 5483 6260 1 chr6B.!!$F1 777
7 TraesCS6A01G186200 chr6B 658198655 658199506 851 False 257.000000 257 72.7170 5474 6315 1 chr6B.!!$F2 841
8 TraesCS6A01G186200 chr2D 20062353 20063385 1032 True 1286.000000 1286 89.2960 3565 4590 1 chr2D.!!$R1 1025
9 TraesCS6A01G186200 chr2D 276935690 276936729 1039 False 1177.000000 1177 87.3440 3565 4590 1 chr2D.!!$F1 1025
10 TraesCS6A01G186200 chr2D 445183750 445184783 1033 True 1171.000000 1171 87.2830 3565 4590 1 chr2D.!!$R2 1025
11 TraesCS6A01G186200 chr3A 572946356 572947219 863 False 1247.000000 1247 92.9480 5483 6335 1 chr3A.!!$F1 852
12 TraesCS6A01G186200 chr5A 544536087 544537116 1029 True 1218.000000 1218 88.1160 3565 4590 1 chr5A.!!$R1 1025
13 TraesCS6A01G186200 chr5A 600293600 600294133 533 True 728.000000 728 91.4500 114 644 1 chr5A.!!$R2 530
14 TraesCS6A01G186200 chr7A 9822821 9823847 1026 True 1216.000000 1216 88.1440 3568 4588 1 chr7A.!!$R1 1020
15 TraesCS6A01G186200 chr7A 717181557 717182102 545 False 761.000000 761 92.0000 114 655 1 chr7A.!!$F1 541
16 TraesCS6A01G186200 chr4D 405709382 405710415 1033 True 1182.000000 1182 87.4640 3565 4590 1 chr4D.!!$R1 1025
17 TraesCS6A01G186200 chr7D 145918989 145920029 1040 False 1166.000000 1166 87.1650 3565 4590 1 chr7D.!!$F2 1025
18 TraesCS6A01G186200 chr7D 598309700 598310731 1031 False 1158.000000 1158 87.0530 3565 4590 1 chr7D.!!$F5 1025
19 TraesCS6A01G186200 chr7D 11614559 11615425 866 False 501.000000 501 77.4490 5483 6346 1 chr7D.!!$F1 863
20 TraesCS6A01G186200 chr5D 14646479 14647512 1033 False 1155.000000 1155 86.9690 3565 4590 1 chr5D.!!$F1 1025
21 TraesCS6A01G186200 chr1A 96739925 96740457 532 True 710.000000 710 90.8580 114 643 1 chr1A.!!$R1 529
22 TraesCS6A01G186200 chr1D 35862607 35863279 672 True 525.000000 525 82.3440 25 634 1 chr1D.!!$R2 609
23 TraesCS6A01G186200 chr2B 5028584 5029233 649 True 575.000000 575 83.5890 25 639 1 chr2B.!!$R1 614
24 TraesCS6A01G186200 chr1B 32787799 32788398 599 False 501.000000 501 83.0560 87 640 1 chr1B.!!$F1 553
25 TraesCS6A01G186200 chr1B 398012024 398012875 851 False 274.000000 274 73.0010 5474 6315 1 chr1B.!!$F3 841
26 TraesCS6A01G186200 chr1B 332834024 332834858 834 False 219.000000 219 71.9860 5483 6306 1 chr1B.!!$F2 823
27 TraesCS6A01G186200 chr3D 565808921 565809442 521 True 361.000000 361 79.2380 5825 6346 1 chr3D.!!$R2 521
28 TraesCS6A01G186200 chr3B 10673606 10674457 851 False 257.000000 257 72.6850 5474 6315 1 chr3B.!!$F1 841
29 TraesCS6A01G186200 chr5B 15042078 15042953 875 False 241.000000 241 72.1530 5474 6339 1 chr5B.!!$F1 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 867 0.250727 TTGACCCTCTTTGAAGCCCG 60.251 55.0 0.00 0.00 0.0 6.13 F
1304 1445 0.727398 GTCTCTTACATGCAACGCCC 59.273 55.0 0.00 0.00 0.0 6.13 F
1423 1564 0.796870 CGCTCTGTTCGACGCATACA 60.797 55.0 0.00 0.00 0.0 2.29 F
2753 2989 0.959372 CTGACCAAGCAGCCCTTCAG 60.959 60.0 0.00 0.00 0.0 3.02 F
3620 3857 0.038435 TGAATCCGCGTCCGTTTGTA 60.038 50.0 4.92 0.00 0.0 2.41 F
4358 4626 0.179097 GAAGAGAGTCCGGACCATGC 60.179 60.0 30.82 17.35 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2685 2912 0.518636 CGTTGGTGTTGCTGGATCTG 59.481 55.0 0.00 0.00 0.00 2.90 R
3108 3344 0.036199 ACACCTAACCGCGGCAATTA 60.036 50.0 28.58 15.80 0.00 1.40 R
3230 3466 0.720027 GCGGTCTAAGTTTTCTCGCC 59.280 55.0 0.00 0.00 33.88 5.54 R
4398 4667 0.033011 AGCACCTATCTCACGGTCCT 60.033 55.0 0.00 0.00 0.00 3.85 R
5239 5671 0.611714 GTCCTCCGGGAGCAAGTTTA 59.388 55.0 18.91 0.00 43.12 2.01 R
5913 6359 1.019673 CCTTTGAGATGCGTCCATGG 58.980 55.0 4.97 4.97 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.801624 CGCGCTCTAGGCACTGCA 62.802 66.667 5.56 0.00 41.52 4.41
62 63 4.034258 GAGTGGTCGGACGCGACA 62.034 66.667 15.93 0.00 40.34 4.35
64 65 3.400590 GTGGTCGGACGCGACAAC 61.401 66.667 15.93 11.62 40.34 3.32
65 66 3.902086 TGGTCGGACGCGACAACA 61.902 61.111 15.93 0.00 40.34 3.33
139 156 1.607801 CCTCGTGCATCTCCAGGTCA 61.608 60.000 0.00 0.00 0.00 4.02
421 517 2.408565 GGGAGAGAGAGGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
503 607 2.847650 GGGGGCTGGGTTTGGTGTA 61.848 63.158 0.00 0.00 0.00 2.90
537 641 0.742990 AAATCTCGCGAAATCCGGCA 60.743 50.000 11.33 0.00 39.04 5.69
667 778 0.772124 AGTTTGGGAGAGGCCAAGGA 60.772 55.000 5.01 0.00 38.95 3.36
756 867 0.250727 TTGACCCTCTTTGAAGCCCG 60.251 55.000 0.00 0.00 0.00 6.13
888 999 6.558488 ACTACTACTACTAGCTGGTACTGT 57.442 41.667 5.74 6.61 0.00 3.55
951 1066 2.453080 CATACACATTTGCATCGCCAC 58.547 47.619 0.00 0.00 0.00 5.01
1046 1175 1.566298 GGGAGGCAATGGAGGACACT 61.566 60.000 0.00 0.00 0.00 3.55
1225 1354 2.168496 CGTCCTACTCCTCCTTTCACA 58.832 52.381 0.00 0.00 0.00 3.58
1304 1445 0.727398 GTCTCTTACATGCAACGCCC 59.273 55.000 0.00 0.00 0.00 6.13
1423 1564 0.796870 CGCTCTGTTCGACGCATACA 60.797 55.000 0.00 0.00 0.00 2.29
1424 1565 1.346365 GCTCTGTTCGACGCATACAA 58.654 50.000 0.00 0.00 0.00 2.41
2594 2821 4.071961 TCTGCAGAAAGACAAAGCTACA 57.928 40.909 15.67 0.00 0.00 2.74
2625 2852 3.577649 ACACTCTGGACTACATGAACG 57.422 47.619 0.00 0.00 0.00 3.95
2735 2971 1.348775 GCAACTCCAGGGATAGGCCT 61.349 60.000 11.78 11.78 36.66 5.19
2753 2989 0.959372 CTGACCAAGCAGCCCTTCAG 60.959 60.000 0.00 0.00 0.00 3.02
2783 3019 3.802675 GCTCGTCAAAGAGGGTACAAGTT 60.803 47.826 0.00 0.00 38.63 2.66
2796 3032 1.136828 ACAAGTTGAGGTGGCCACTA 58.863 50.000 33.91 18.51 0.00 2.74
3125 3361 2.914695 TATAATTGCCGCGGTTAGGT 57.085 45.000 28.70 11.25 0.00 3.08
3133 3369 2.983791 GCGGTTAGGTGTAGGCCA 59.016 61.111 5.01 0.00 0.00 5.36
3230 3466 1.901650 GACCTGCAGGCGAAAACTCG 61.902 60.000 33.06 5.14 39.32 4.18
3240 3476 1.933457 CGAAAACTCGGCGAGAAAAC 58.067 50.000 40.35 25.29 33.32 2.43
3241 3477 1.525619 CGAAAACTCGGCGAGAAAACT 59.474 47.619 40.35 17.47 33.32 2.66
3243 3479 3.182972 CGAAAACTCGGCGAGAAAACTTA 59.817 43.478 40.35 0.76 33.32 2.24
3256 3492 3.579151 AGAAAACTTAGACCGCCTTCTCT 59.421 43.478 0.00 0.00 0.00 3.10
3276 3512 1.666553 GTGACGTCACGGCCATCAA 60.667 57.895 31.03 0.00 37.10 2.57
3350 3587 1.189752 TCAGAGAAGCTTCATCCGCT 58.810 50.000 27.57 13.27 39.94 5.52
3428 3665 6.967199 CCGCAAGAAAATATAGAAAGACAACC 59.033 38.462 0.00 0.00 43.02 3.77
3552 3789 1.480137 CTGTCCAATCTCGCTCTCCTT 59.520 52.381 0.00 0.00 0.00 3.36
3553 3790 2.690497 CTGTCCAATCTCGCTCTCCTTA 59.310 50.000 0.00 0.00 0.00 2.69
3554 3791 3.096852 TGTCCAATCTCGCTCTCCTTAA 58.903 45.455 0.00 0.00 0.00 1.85
3555 3792 3.131223 TGTCCAATCTCGCTCTCCTTAAG 59.869 47.826 0.00 0.00 0.00 1.85
3556 3793 3.381908 GTCCAATCTCGCTCTCCTTAAGA 59.618 47.826 3.36 0.00 0.00 2.10
3557 3794 4.038642 GTCCAATCTCGCTCTCCTTAAGAT 59.961 45.833 3.36 0.00 32.19 2.40
3558 3795 4.651503 TCCAATCTCGCTCTCCTTAAGATT 59.348 41.667 3.36 0.00 37.20 2.40
3559 3796 5.129485 TCCAATCTCGCTCTCCTTAAGATTT 59.871 40.000 3.36 0.00 35.15 2.17
3560 3797 5.465056 CCAATCTCGCTCTCCTTAAGATTTC 59.535 44.000 3.36 0.00 35.15 2.17
3561 3798 4.294416 TCTCGCTCTCCTTAAGATTTCG 57.706 45.455 3.36 1.29 32.19 3.46
3562 3799 3.066900 TCTCGCTCTCCTTAAGATTTCGG 59.933 47.826 3.36 0.00 32.19 4.30
3563 3800 1.861575 CGCTCTCCTTAAGATTTCGGC 59.138 52.381 3.36 0.13 32.19 5.54
3600 3837 2.093890 CTTGCATCTTGCCCACATGTA 58.906 47.619 0.00 0.00 44.23 2.29
3603 3840 2.300433 GCATCTTGCCCACATGTATGA 58.700 47.619 0.00 0.00 37.42 2.15
3620 3857 0.038435 TGAATCCGCGTCCGTTTGTA 60.038 50.000 4.92 0.00 0.00 2.41
3622 3859 0.244450 AATCCGCGTCCGTTTGTAGA 59.756 50.000 4.92 0.00 0.00 2.59
3626 3863 1.076533 CGCGTCCGTTTGTAGATGCT 61.077 55.000 0.00 0.00 41.82 3.79
3627 3864 1.076332 GCGTCCGTTTGTAGATGCTT 58.924 50.000 0.00 0.00 40.99 3.91
3651 3888 0.390124 CTTGGCATGTTTGTGGTGCT 59.610 50.000 0.00 0.00 38.83 4.40
3675 3912 0.691078 AGGACTGGACTGGTGTGTGT 60.691 55.000 0.00 0.00 0.00 3.72
3685 3922 3.753272 GACTGGTGTGTGTGCATTTATCT 59.247 43.478 0.00 0.00 0.00 1.98
3689 3926 3.255642 GGTGTGTGTGCATTTATCTGGTT 59.744 43.478 0.00 0.00 0.00 3.67
3701 3938 1.048601 ATCTGGTTGTCCACACGTCT 58.951 50.000 0.00 0.00 39.03 4.18
3752 3991 0.433492 CGTTTAGCAGTTCGTCCACG 59.567 55.000 0.00 0.00 41.45 4.94
3770 4009 2.930040 CACGTGTCAGTTTTCACTCACT 59.070 45.455 7.58 0.00 29.34 3.41
3775 4014 5.234329 CGTGTCAGTTTTCACTCACTTACAT 59.766 40.000 0.00 0.00 31.51 2.29
3808 4048 1.748493 GGCATTTATCAGTTCGCCCAA 59.252 47.619 0.00 0.00 33.31 4.12
3811 4051 3.366883 GCATTTATCAGTTCGCCCAAACA 60.367 43.478 0.00 0.00 0.00 2.83
3822 4064 0.250338 GCCCAAACACGTCTCCTCTT 60.250 55.000 0.00 0.00 0.00 2.85
3829 4072 1.971357 ACACGTCTCCTCTTCCACATT 59.029 47.619 0.00 0.00 0.00 2.71
3831 4074 2.029020 CACGTCTCCTCTTCCACATTCA 60.029 50.000 0.00 0.00 0.00 2.57
3845 4089 3.067180 CCACATTCAAAGCTGTCACTTGT 59.933 43.478 0.00 0.00 0.00 3.16
3875 4119 0.609131 GCAGGGTACATGGCAACTGT 60.609 55.000 0.00 0.00 37.61 3.55
3880 4124 2.026636 GGGTACATGGCAACTGTCCTAA 60.027 50.000 0.00 0.00 37.61 2.69
3931 4185 6.148811 TCTCTTTTACCCGAACATGTCAATTC 59.851 38.462 0.00 0.00 0.00 2.17
4020 4279 3.210358 ACCCGAACATGTTATTTTGCG 57.790 42.857 11.95 9.49 0.00 4.85
4043 4302 3.459145 TGTCTTTTTGTAGCGCTACACA 58.541 40.909 41.78 34.86 44.81 3.72
4076 4336 3.006967 AGTGTTAGTAGTGGCAACTCCTG 59.993 47.826 0.00 0.00 37.88 3.86
4145 4406 4.043608 ACTGCCTAGTGTTAGTAGGTGA 57.956 45.455 10.53 0.00 42.16 4.02
4149 4410 4.589798 TGCCTAGTGTTAGTAGGTGACAAA 59.410 41.667 10.53 0.00 42.16 2.83
4157 4418 8.434392 AGTGTTAGTAGGTGACAAATCCTAAAA 58.566 33.333 0.00 0.00 37.94 1.52
4240 4506 5.733620 AAAAATGGCATCTGACACTTGAT 57.266 34.783 0.00 0.00 34.80 2.57
4295 4561 4.216257 GCAAATGTAGTTGTCAGACATGGT 59.784 41.667 3.45 0.00 34.10 3.55
4316 4582 6.818233 TGGTAACTGTAGTACAACAACATGA 58.182 36.000 4.21 0.00 37.61 3.07
4345 4613 7.177216 ACTGCAATTAAATGGACATTGAAGAGA 59.823 33.333 6.18 0.00 36.10 3.10
4358 4626 0.179097 GAAGAGAGTCCGGACCATGC 60.179 60.000 30.82 17.35 0.00 4.06
4409 4678 2.910479 ACGTGCAGGACCGTGAGA 60.910 61.111 14.38 0.00 35.69 3.27
4456 4728 3.129638 GGCGTTATCTATTTTGCCCACAA 59.870 43.478 0.00 0.00 36.51 3.33
4520 4799 3.243704 GCATTACTTCTTTTGCCCACACA 60.244 43.478 0.00 0.00 0.00 3.72
4621 4900 9.151471 TCGTCCTAAGATTTTACTTCAAGAATG 57.849 33.333 0.00 0.00 0.00 2.67
4622 4901 9.151471 CGTCCTAAGATTTTACTTCAAGAATGA 57.849 33.333 0.00 0.00 0.00 2.57
4690 4970 6.484818 AAATTTCGAATTTGAAATGCCAGG 57.515 33.333 27.05 0.00 45.36 4.45
4691 4971 2.652941 TCGAATTTGAAATGCCAGGC 57.347 45.000 3.66 3.66 0.00 4.85
4772 5203 3.077229 TCTTGCGTGGAACAAATTGTG 57.923 42.857 0.00 0.00 44.16 3.33
4835 5266 5.516090 TGTTTTGTAAAACCGCTCTGATTC 58.484 37.500 15.36 0.00 45.82 2.52
4886 5317 1.087202 TAGCTACCAATGCAACGCGG 61.087 55.000 12.47 0.00 0.00 6.46
4898 5329 1.217882 CAACGCGGGATGTATTCCTC 58.782 55.000 12.47 0.00 44.75 3.71
4936 5368 1.154854 CGTGTGCATGAACGACGTG 60.155 57.895 16.21 0.00 42.32 4.49
4946 5378 2.663808 TGAACGACGTGCGAGATTAAA 58.336 42.857 0.00 0.00 44.57 1.52
4947 5379 3.051327 TGAACGACGTGCGAGATTAAAA 58.949 40.909 0.00 0.00 44.57 1.52
4948 5380 3.490155 TGAACGACGTGCGAGATTAAAAA 59.510 39.130 0.00 0.00 44.57 1.94
5030 5462 1.728971 GTTGAAGGATGCTGTCACGAG 59.271 52.381 0.00 0.00 0.00 4.18
5159 5591 3.445096 AGTATGCTCAAAACTGGATTGCC 59.555 43.478 0.00 0.00 0.00 4.52
5213 5645 3.446310 TTCTGTAACTTGTGCTCGTGA 57.554 42.857 0.00 0.00 0.00 4.35
5219 5651 0.753262 ACTTGTGCTCGTGAAGGACT 59.247 50.000 0.00 0.00 45.94 3.85
5222 5654 2.325583 TGTGCTCGTGAAGGACTTTT 57.674 45.000 0.00 0.00 45.94 2.27
5223 5655 2.639065 TGTGCTCGTGAAGGACTTTTT 58.361 42.857 0.00 0.00 45.94 1.94
5285 5718 9.462174 TTTGAGTAACTGTATTCTGCATTTTTG 57.538 29.630 0.00 0.00 0.00 2.44
5416 5849 4.281182 TCTCTCTATATTTTCGACAGGCCC 59.719 45.833 0.00 0.00 0.00 5.80
5426 5859 1.212751 GACAGGCCCGTTTCATTGC 59.787 57.895 0.00 0.00 0.00 3.56
5450 5883 7.775093 TGCCTTAAAATGTAGCATCAATAGACT 59.225 33.333 0.00 0.00 0.00 3.24
5468 5901 8.391106 CAATAGACTTTTACATAGAAGGCACAC 58.609 37.037 0.00 0.00 33.22 3.82
5476 5909 7.552458 TTACATAGAAGGCACACACAATATG 57.448 36.000 0.00 0.00 0.00 1.78
5480 5913 4.655963 AGAAGGCACACACAATATGAACT 58.344 39.130 0.00 0.00 0.00 3.01
5481 5914 4.697352 AGAAGGCACACACAATATGAACTC 59.303 41.667 0.00 0.00 0.00 3.01
5485 5918 4.216257 GGCACACACAATATGAACTCTGTT 59.784 41.667 0.00 0.00 0.00 3.16
5624 6068 3.761752 GCTGTTTTAAGGCATAGGGTTGA 59.238 43.478 0.00 0.00 0.00 3.18
5630 6074 6.523035 TTTAAGGCATAGGGTTGATATGGA 57.477 37.500 0.00 0.00 32.35 3.41
5631 6075 4.647564 AAGGCATAGGGTTGATATGGAG 57.352 45.455 0.00 0.00 32.35 3.86
5736 6180 2.241685 AGCATCTCAGGATCAGGCTTTT 59.758 45.455 0.00 0.00 28.44 2.27
5804 6249 5.852282 AGCCTGAATTACAACAAGTGTTT 57.148 34.783 0.00 0.00 41.98 2.83
5841 6287 2.433604 CTCCTGTCCAGCTGTGATACAT 59.566 50.000 13.81 0.00 0.00 2.29
6260 6707 0.605050 TTAGCACGTCAAGCATGGCA 60.605 50.000 0.00 0.00 0.00 4.92
6274 6721 5.386958 AGCATGGCATTTGATAGCTAATG 57.613 39.130 10.26 10.26 39.31 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.876162 CGAAGCTCGCGAACGACG 61.876 66.667 11.33 13.14 45.12 5.12
19 20 1.094073 CACCATGCAGTGCCTAGAGC 61.094 60.000 13.72 0.00 44.14 4.09
20 21 0.463295 CCACCATGCAGTGCCTAGAG 60.463 60.000 13.72 0.00 36.38 2.43
21 22 1.603842 CCACCATGCAGTGCCTAGA 59.396 57.895 13.72 0.00 36.38 2.43
22 23 1.452651 CCCACCATGCAGTGCCTAG 60.453 63.158 13.72 3.08 36.38 3.02
23 24 2.676608 CCCACCATGCAGTGCCTA 59.323 61.111 13.72 0.00 36.38 3.93
33 34 4.415150 CCACTCGCTGCCCACCAT 62.415 66.667 0.00 0.00 0.00 3.55
126 143 2.187946 CCGGTGACCTGGAGATGC 59.812 66.667 0.00 0.00 0.00 3.91
170 188 2.270205 CTCAAGCGCTGGTGGGAT 59.730 61.111 12.58 0.00 0.00 3.85
237 255 4.351938 CGTCGAGTGGGCGTTCCA 62.352 66.667 0.00 0.00 44.79 3.53
500 604 2.014064 TTACGGCCGGCGCTATTACA 62.014 55.000 31.76 0.00 34.44 2.41
503 607 1.226030 GATTTACGGCCGGCGCTATT 61.226 55.000 31.76 9.01 34.44 1.73
555 659 3.030415 AAAAACGCCCCACTCGAAT 57.970 47.368 0.00 0.00 0.00 3.34
576 682 0.250553 ACTTTTTGGATGTCGGCGGA 60.251 50.000 7.21 0.00 0.00 5.54
603 709 1.533994 GGCCCCACAAGAAGCCTTT 60.534 57.895 0.00 0.00 42.34 3.11
756 867 1.949465 AGTCGTTCAAAGGTGGTGAC 58.051 50.000 0.00 0.00 0.00 3.67
888 999 7.676893 TGAGTGGAGGGAAAAGTATTAGAGTAA 59.323 37.037 0.00 0.00 0.00 2.24
951 1066 2.426023 GATGGAATCGGTCGGGGG 59.574 66.667 0.00 0.00 31.13 5.40
987 1103 3.493830 TTCGTTGTCGCTGCCGAGT 62.494 57.895 0.00 0.00 45.38 4.18
988 1104 2.733218 TTCGTTGTCGCTGCCGAG 60.733 61.111 0.00 0.00 45.38 4.63
1046 1175 4.147449 CGAGAGATGGCCACCGCA 62.147 66.667 8.16 0.00 36.38 5.69
1076 1205 2.061773 GAGCGTGTCCATCATATTCCG 58.938 52.381 0.00 0.00 0.00 4.30
1225 1354 2.365582 CTTAATTACCTGTTGGCGGCT 58.634 47.619 11.43 0.00 36.63 5.52
1936 2086 2.579738 GCGGGTGAGGAAGAGGTC 59.420 66.667 0.00 0.00 0.00 3.85
2081 2231 1.524165 CGACGACGAGGAGGAGGAT 60.524 63.158 0.00 0.00 42.66 3.24
2237 2387 3.092511 ATCATCCGCTGCCCAGGT 61.093 61.111 0.00 0.00 0.00 4.00
2557 2760 8.856490 TTTCTGCAGAAAGAAAAAGAATGTAC 57.144 30.769 32.86 0.00 41.92 2.90
2594 2821 1.668294 CAGAGTGTTGGCGAGGACT 59.332 57.895 0.00 0.00 0.00 3.85
2625 2852 3.134458 CGGAAATCTGGGCTATCAGAAC 58.866 50.000 8.50 4.87 45.54 3.01
2685 2912 0.518636 CGTTGGTGTTGCTGGATCTG 59.481 55.000 0.00 0.00 0.00 2.90
2686 2913 1.237285 GCGTTGGTGTTGCTGGATCT 61.237 55.000 0.00 0.00 0.00 2.75
2687 2914 1.210155 GCGTTGGTGTTGCTGGATC 59.790 57.895 0.00 0.00 0.00 3.36
2688 2915 0.895100 ATGCGTTGGTGTTGCTGGAT 60.895 50.000 0.00 0.00 0.00 3.41
2689 2916 1.514678 GATGCGTTGGTGTTGCTGGA 61.515 55.000 0.00 0.00 0.00 3.86
2690 2917 1.081242 GATGCGTTGGTGTTGCTGG 60.081 57.895 0.00 0.00 0.00 4.85
2691 2918 0.661187 GTGATGCGTTGGTGTTGCTG 60.661 55.000 0.00 0.00 0.00 4.41
2692 2919 1.654220 GTGATGCGTTGGTGTTGCT 59.346 52.632 0.00 0.00 0.00 3.91
2693 2920 1.371635 GGTGATGCGTTGGTGTTGC 60.372 57.895 0.00 0.00 0.00 4.17
2735 2971 1.073722 CTGAAGGGCTGCTTGGTCA 59.926 57.895 0.00 0.00 0.00 4.02
2783 3019 2.959484 GCTGCTAGTGGCCACCTCA 61.959 63.158 32.29 23.86 40.92 3.86
3099 3335 8.591072 ACCTAACCGCGGCAATTATATATATAT 58.409 33.333 28.58 10.10 0.00 0.86
3100 3336 7.868922 CACCTAACCGCGGCAATTATATATATA 59.131 37.037 28.58 0.00 0.00 0.86
3101 3337 6.704493 CACCTAACCGCGGCAATTATATATAT 59.296 38.462 28.58 0.00 0.00 0.86
3102 3338 6.044046 CACCTAACCGCGGCAATTATATATA 58.956 40.000 28.58 2.10 0.00 0.86
3103 3339 4.873827 CACCTAACCGCGGCAATTATATAT 59.126 41.667 28.58 0.00 0.00 0.86
3104 3340 4.247258 CACCTAACCGCGGCAATTATATA 58.753 43.478 28.58 4.78 0.00 0.86
3105 3341 3.071479 CACCTAACCGCGGCAATTATAT 58.929 45.455 28.58 0.00 0.00 0.86
3106 3342 2.158928 ACACCTAACCGCGGCAATTATA 60.159 45.455 28.58 8.08 0.00 0.98
3107 3343 1.305201 CACCTAACCGCGGCAATTAT 58.695 50.000 28.58 0.00 0.00 1.28
3108 3344 0.036199 ACACCTAACCGCGGCAATTA 60.036 50.000 28.58 15.80 0.00 1.40
3125 3361 1.842052 TCTCACGTGTATGGCCTACA 58.158 50.000 16.51 7.64 38.02 2.74
3133 3369 2.304761 ACCCACCAAATCTCACGTGTAT 59.695 45.455 16.51 7.87 0.00 2.29
3230 3466 0.720027 GCGGTCTAAGTTTTCTCGCC 59.280 55.000 0.00 0.00 33.88 5.54
3235 3471 3.680458 CAGAGAAGGCGGTCTAAGTTTTC 59.320 47.826 0.00 0.00 0.00 2.29
3240 3476 1.134965 CACCAGAGAAGGCGGTCTAAG 60.135 57.143 0.00 0.00 0.00 2.18
3241 3477 0.895530 CACCAGAGAAGGCGGTCTAA 59.104 55.000 0.00 0.00 0.00 2.10
3243 3479 1.228894 TCACCAGAGAAGGCGGTCT 60.229 57.895 0.00 0.00 0.00 3.85
3256 3492 3.583276 GATGGCCGTGACGTCACCA 62.583 63.158 36.01 29.78 43.66 4.17
3273 3509 4.285003 TGGAAGAGGAAAAGGTACGATTGA 59.715 41.667 0.00 0.00 0.00 2.57
3276 3512 5.429130 GAATGGAAGAGGAAAAGGTACGAT 58.571 41.667 0.00 0.00 0.00 3.73
3428 3665 4.502558 GCGATTAAAACGACTCGGTTATG 58.497 43.478 1.27 0.00 34.97 1.90
3552 3789 0.391927 CGTGTGGGGCCGAAATCTTA 60.392 55.000 0.00 0.00 0.00 2.10
3553 3790 1.674322 CGTGTGGGGCCGAAATCTT 60.674 57.895 0.00 0.00 0.00 2.40
3554 3791 2.046314 CGTGTGGGGCCGAAATCT 60.046 61.111 0.00 0.00 0.00 2.40
3555 3792 2.359478 ACGTGTGGGGCCGAAATC 60.359 61.111 0.00 0.00 0.00 2.17
3556 3793 2.671619 CACGTGTGGGGCCGAAAT 60.672 61.111 7.58 0.00 0.00 2.17
3557 3794 4.178169 ACACGTGTGGGGCCGAAA 62.178 61.111 22.71 0.00 34.19 3.46
3558 3795 4.920112 CACACGTGTGGGGCCGAA 62.920 66.667 35.65 0.00 42.10 4.30
3600 3837 0.672401 ACAAACGGACGCGGATTCAT 60.672 50.000 12.47 0.00 0.00 2.57
3603 3840 0.244450 TCTACAAACGGACGCGGATT 59.756 50.000 12.47 0.00 0.00 3.01
3620 3857 3.362706 ACATGCCAAGATTCAAGCATCT 58.637 40.909 0.00 0.00 43.85 2.90
3622 3859 4.250464 CAAACATGCCAAGATTCAAGCAT 58.750 39.130 0.00 0.00 46.50 3.79
3626 3863 3.387374 ACCACAAACATGCCAAGATTCAA 59.613 39.130 0.00 0.00 0.00 2.69
3627 3864 2.964464 ACCACAAACATGCCAAGATTCA 59.036 40.909 0.00 0.00 0.00 2.57
3651 3888 1.074405 ACACCAGTCCAGTCCTACGTA 59.926 52.381 0.00 0.00 0.00 3.57
3685 3922 0.250793 AACAGACGTGTGGACAACCA 59.749 50.000 17.83 0.00 44.76 3.67
3689 3926 1.647346 GTGAAACAGACGTGTGGACA 58.353 50.000 17.83 10.59 36.84 4.02
3701 3938 0.464735 CCCCTTCGTGTGGTGAAACA 60.465 55.000 0.00 0.00 39.98 2.83
3752 3991 6.422223 CATGTAAGTGAGTGAAAACTGACAC 58.578 40.000 0.00 0.00 39.95 3.67
3770 4009 0.251121 CCCACACACCAGCCATGTAA 60.251 55.000 0.00 0.00 0.00 2.41
3775 4014 2.943369 AAATGCCCACACACCAGCCA 62.943 55.000 0.00 0.00 0.00 4.75
3808 4048 1.410004 TGTGGAAGAGGAGACGTGTT 58.590 50.000 0.00 0.00 0.00 3.32
3811 4051 2.248248 TGAATGTGGAAGAGGAGACGT 58.752 47.619 0.00 0.00 0.00 4.34
3822 4064 3.213206 AGTGACAGCTTTGAATGTGGA 57.787 42.857 0.00 0.00 0.00 4.02
3829 4072 3.313249 CACATGACAAGTGACAGCTTTGA 59.687 43.478 4.82 0.00 39.30 2.69
3831 4074 3.282021 ACACATGACAAGTGACAGCTTT 58.718 40.909 17.19 0.00 40.16 3.51
3845 4089 2.937519 TGTACCCTGCAAAACACATGA 58.062 42.857 0.00 0.00 0.00 3.07
3899 4143 4.100498 TGTTCGGGTAAAAGAGAGAGTTGT 59.900 41.667 0.00 0.00 0.00 3.32
3931 4185 1.272212 GTACCCTGCAAAACACATGGG 59.728 52.381 0.00 0.00 40.37 4.00
4020 4279 4.151689 TGTGTAGCGCTACAAAAAGACATC 59.848 41.667 42.80 29.12 46.33 3.06
4043 4302 5.178797 CACTACTAACACTAGGCAATTGCT 58.821 41.667 28.42 17.09 41.70 3.91
4076 4336 7.713764 ACAGTTGCCATGATTTAAAAACTTC 57.286 32.000 0.00 0.00 0.00 3.01
4149 4410 8.949177 GTTGCCATGATTTGAAAATTTTAGGAT 58.051 29.630 2.75 0.00 0.00 3.24
4157 4418 6.996509 ACTACAGTTGCCATGATTTGAAAAT 58.003 32.000 0.00 0.00 0.00 1.82
4240 4506 0.689055 ACTGCAGTTGCCATCTCAGA 59.311 50.000 15.25 0.00 41.18 3.27
4295 4561 7.982919 AGTTGTCATGTTGTTGTACTACAGTTA 59.017 33.333 10.01 2.33 37.28 2.24
4316 4582 6.757237 TCAATGTCCATTTAATTGCAGTTGT 58.243 32.000 4.47 0.00 32.50 3.32
4345 4613 2.224159 AGTTGGCATGGTCCGGACT 61.224 57.895 32.52 12.83 0.00 3.85
4358 4626 3.345808 CACGCGTCCCACAGTTGG 61.346 66.667 9.86 0.00 43.50 3.77
4398 4667 0.033011 AGCACCTATCTCACGGTCCT 60.033 55.000 0.00 0.00 0.00 3.85
4409 4678 2.028130 CGACCTCTCTCAAGCACCTAT 58.972 52.381 0.00 0.00 0.00 2.57
4416 4685 0.244994 CCCACACGACCTCTCTCAAG 59.755 60.000 0.00 0.00 0.00 3.02
4456 4728 1.840635 GGTCCCTCTCACAAGCCTATT 59.159 52.381 0.00 0.00 0.00 1.73
4463 4735 2.599281 TCGCGGTCCCTCTCACAA 60.599 61.111 6.13 0.00 0.00 3.33
4492 4771 4.082026 GGGCAAAAGAAGTAATGCTCACAT 60.082 41.667 0.00 0.00 39.11 3.21
4520 4799 3.009115 ACCAGCCCACACGCCTAT 61.009 61.111 0.00 0.00 0.00 2.57
4590 4869 7.988737 TGAAGTAAAATCTTAGGACGACGATA 58.011 34.615 0.00 0.00 0.00 2.92
4591 4870 6.860080 TGAAGTAAAATCTTAGGACGACGAT 58.140 36.000 0.00 0.00 0.00 3.73
4592 4871 6.258230 TGAAGTAAAATCTTAGGACGACGA 57.742 37.500 0.00 0.00 0.00 4.20
4593 4872 6.805271 TCTTGAAGTAAAATCTTAGGACGACG 59.195 38.462 0.00 0.00 0.00 5.12
4594 4873 8.530269 TTCTTGAAGTAAAATCTTAGGACGAC 57.470 34.615 0.00 0.00 0.00 4.34
4595 4874 9.151471 CATTCTTGAAGTAAAATCTTAGGACGA 57.849 33.333 0.00 0.00 0.00 4.20
4596 4875 9.151471 TCATTCTTGAAGTAAAATCTTAGGACG 57.849 33.333 0.00 0.00 0.00 4.79
4621 4900 8.166726 ACTTTTTCTATCCCATCCCTATTGATC 58.833 37.037 0.00 0.00 0.00 2.92
4622 4901 8.061890 ACTTTTTCTATCCCATCCCTATTGAT 57.938 34.615 0.00 0.00 0.00 2.57
4623 4902 7.465900 ACTTTTTCTATCCCATCCCTATTGA 57.534 36.000 0.00 0.00 0.00 2.57
4670 4950 3.244009 TGCCTGGCATTTCAAATTCGAAA 60.244 39.130 19.30 0.00 39.13 3.46
4772 5203 6.195983 CCGAACGTACAAATATGACTACAGAC 59.804 42.308 0.00 0.00 0.00 3.51
4864 5295 2.413502 CGCGTTGCATTGGTAGCTAAAA 60.414 45.455 0.00 0.00 0.00 1.52
4865 5296 1.129624 CGCGTTGCATTGGTAGCTAAA 59.870 47.619 0.00 0.00 0.00 1.85
4866 5297 0.724549 CGCGTTGCATTGGTAGCTAA 59.275 50.000 0.00 0.00 0.00 3.09
4936 5368 4.333372 TCCACCGGTTATTTTTAATCTCGC 59.667 41.667 2.97 0.00 0.00 5.03
4937 5369 6.425577 TTCCACCGGTTATTTTTAATCTCG 57.574 37.500 2.97 0.00 0.00 4.04
4946 5378 3.761752 CCAGTCAATTCCACCGGTTATTT 59.238 43.478 2.97 0.00 0.00 1.40
4947 5379 3.352648 CCAGTCAATTCCACCGGTTATT 58.647 45.455 2.97 1.99 0.00 1.40
4948 5380 2.944094 GCCAGTCAATTCCACCGGTTAT 60.944 50.000 2.97 0.00 0.00 1.89
5030 5462 2.358737 CCAGACCAACGACAGCCC 60.359 66.667 0.00 0.00 0.00 5.19
5099 5531 1.207089 CCTATCTCGCAAACTGACCCA 59.793 52.381 0.00 0.00 0.00 4.51
5237 5669 1.278127 TCCTCCGGGAGCAAGTTTAAG 59.722 52.381 18.91 1.77 36.57 1.85
5239 5671 0.611714 GTCCTCCGGGAGCAAGTTTA 59.388 55.000 18.91 0.00 43.12 2.01
5285 5718 3.380004 AGTCACTCTGTCTCGAATCCATC 59.620 47.826 0.00 0.00 0.00 3.51
5416 5849 5.861251 TGCTACATTTTAAGGCAATGAAACG 59.139 36.000 5.56 0.00 35.51 3.60
5450 5883 6.892658 ATTGTGTGTGCCTTCTATGTAAAA 57.107 33.333 0.00 0.00 0.00 1.52
5455 5888 6.317140 AGTTCATATTGTGTGTGCCTTCTATG 59.683 38.462 0.00 0.00 0.00 2.23
5460 5893 4.456911 CAGAGTTCATATTGTGTGTGCCTT 59.543 41.667 0.00 0.00 0.00 4.35
5468 5901 6.535150 ACCGATGTAACAGAGTTCATATTGTG 59.465 38.462 0.00 0.00 0.00 3.33
5476 5909 3.056749 ACCTCACCGATGTAACAGAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
5480 5913 3.693085 GAGTACCTCACCGATGTAACAGA 59.307 47.826 0.00 0.00 0.00 3.41
5481 5914 3.695060 AGAGTACCTCACCGATGTAACAG 59.305 47.826 0.00 0.00 32.06 3.16
5485 5918 3.276857 GACAGAGTACCTCACCGATGTA 58.723 50.000 0.00 0.00 32.06 2.29
5630 6074 2.574824 ACCTTAACCGGAGTAATTGCCT 59.425 45.455 9.46 0.00 0.00 4.75
5631 6075 2.995283 ACCTTAACCGGAGTAATTGCC 58.005 47.619 9.46 0.00 0.00 4.52
5841 6287 1.369692 CACAGCCCGTACTTGGTCA 59.630 57.895 0.00 0.00 0.00 4.02
5913 6359 1.019673 CCTTTGAGATGCGTCCATGG 58.980 55.000 4.97 4.97 0.00 3.66
5914 6360 1.019673 CCCTTTGAGATGCGTCCATG 58.980 55.000 1.23 0.00 0.00 3.66
6008 6454 7.507616 CCACAGACTTTATAAGGACCTCTCTAT 59.492 40.741 0.98 0.00 0.00 1.98
6274 6721 2.472909 GGGCACACAAGCTATCCGC 61.473 63.158 0.00 0.00 39.57 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.