Multiple sequence alignment - TraesCS6A01G186000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G186000 chr6A 100.000 4188 0 0 1 4188 219633791 219637978 0.000000e+00 7734
1 TraesCS6A01G186000 chr6B 92.950 2071 99 22 1449 3486 290684653 290686709 0.000000e+00 2972
2 TraesCS6A01G186000 chr6B 92.861 2073 100 20 1449 3486 290706334 290708393 0.000000e+00 2964
3 TraesCS6A01G186000 chr6B 87.044 1397 113 32 108 1463 290683259 290684628 0.000000e+00 1515
4 TraesCS6A01G186000 chr6B 87.060 1391 113 31 113 1463 290704946 290706309 0.000000e+00 1509
5 TraesCS6A01G186000 chr6B 95.710 373 12 4 3815 4185 290710232 290710602 7.750000e-167 597
6 TraesCS6A01G186000 chr6B 95.217 230 8 3 3815 4043 290688549 290688776 1.110000e-95 361
7 TraesCS6A01G186000 chr6B 80.053 376 41 22 3826 4184 38561572 38561214 8.990000e-62 248
8 TraesCS6A01G186000 chr6B 78.457 376 53 19 3826 4185 46657015 46657378 1.960000e-53 220
9 TraesCS6A01G186000 chr6B 79.630 324 37 21 178 489 54696320 54696014 5.490000e-49 206
10 TraesCS6A01G186000 chr6B 93.023 129 5 2 3484 3609 290688362 290688489 7.150000e-43 185
11 TraesCS6A01G186000 chr6B 93.023 129 5 2 3484 3609 290710045 290710172 7.150000e-43 185
12 TraesCS6A01G186000 chr6B 82.022 178 22 4 3608 3781 194055875 194056046 4.360000e-30 143
13 TraesCS6A01G186000 chr6D 92.683 656 31 8 2728 3382 160558624 160559263 0.000000e+00 929
14 TraesCS6A01G186000 chr6D 90.560 678 43 11 110 773 160556765 160557435 0.000000e+00 878
15 TraesCS6A01G186000 chr6D 96.239 452 15 2 1410 1860 160558178 160558628 0.000000e+00 739
16 TraesCS6A01G186000 chr6D 94.385 374 17 3 3814 4185 160559597 160559968 4.700000e-159 571
17 TraesCS6A01G186000 chr6D 83.030 495 46 11 834 1309 160557437 160557912 8.380000e-112 414
18 TraesCS6A01G186000 chr6D 85.632 174 22 2 3607 3780 263478210 263478040 3.330000e-41 180
19 TraesCS6A01G186000 chrUn 89.423 416 31 2 601 1004 477152250 477151836 2.890000e-141 512
20 TraesCS6A01G186000 chrUn 95.217 230 8 3 3815 4043 355442587 355442360 1.110000e-95 361
21 TraesCS6A01G186000 chrUn 78.638 323 44 16 175 486 103547080 103547388 1.540000e-44 191
22 TraesCS6A01G186000 chrUn 93.023 129 5 2 3484 3609 355442774 355442647 7.150000e-43 185
23 TraesCS6A01G186000 chr7A 84.872 390 59 0 2797 3186 537059544 537059155 1.090000e-105 394
24 TraesCS6A01G186000 chr7A 85.356 239 34 1 2265 2502 537060542 537060304 3.230000e-61 246
25 TraesCS6A01G186000 chr7D 84.439 392 57 4 2797 3186 463040739 463041128 2.360000e-102 383
26 TraesCS6A01G186000 chr7D 85.774 239 33 1 2265 2502 463039740 463039978 6.950000e-63 252
27 TraesCS6A01G186000 chr7B 85.356 239 34 1 2265 2502 488705786 488705548 3.230000e-61 246
28 TraesCS6A01G186000 chr7B 87.222 180 19 3 3604 3782 704624882 704625058 7.100000e-48 202
29 TraesCS6A01G186000 chr3B 78.393 361 45 21 3826 4169 744912872 744912528 1.970000e-48 204
30 TraesCS6A01G186000 chr3D 78.816 321 44 16 176 486 8676416 8676722 1.190000e-45 195
31 TraesCS6A01G186000 chr2B 80.451 266 38 9 176 432 374253785 374254045 1.540000e-44 191
32 TraesCS6A01G186000 chr2B 86.857 175 14 4 3608 3781 587727397 587727563 1.990000e-43 187
33 TraesCS6A01G186000 chr5B 85.311 177 19 5 3608 3782 524549081 524548910 4.300000e-40 176
34 TraesCS6A01G186000 chr5D 84.393 173 23 4 3607 3778 519663351 519663182 2.590000e-37 167
35 TraesCS6A01G186000 chr2D 78.333 300 36 16 176 456 558791104 558791393 2.590000e-37 167
36 TraesCS6A01G186000 chr1D 84.270 178 20 8 3604 3780 415941038 415941208 2.590000e-37 167
37 TraesCS6A01G186000 chr5A 83.051 177 26 4 3608 3780 459771062 459770886 1.560000e-34 158
38 TraesCS6A01G186000 chr5A 82.320 181 17 10 3608 3780 666295886 666295713 4.360000e-30 143
39 TraesCS6A01G186000 chr3A 76.543 324 52 16 171 486 17733661 17733354 5.610000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G186000 chr6A 219633791 219637978 4187 False 7734.00 7734 100.0000 1 4188 1 chr6A.!!$F1 4187
1 TraesCS6A01G186000 chr6B 290704946 290710602 5656 False 1313.75 2964 92.1635 113 4185 4 chr6B.!!$F4 4072
2 TraesCS6A01G186000 chr6B 290683259 290688776 5517 False 1258.25 2972 92.0585 108 4043 4 chr6B.!!$F3 3935
3 TraesCS6A01G186000 chr6D 160556765 160559968 3203 False 706.20 929 91.3794 110 4185 5 chr6D.!!$F1 4075
4 TraesCS6A01G186000 chr7A 537059155 537060542 1387 True 320.00 394 85.1140 2265 3186 2 chr7A.!!$R1 921
5 TraesCS6A01G186000 chr7D 463039740 463041128 1388 False 317.50 383 85.1065 2265 3186 2 chr7D.!!$F1 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 322 0.033504 GTGCGTTCAGTGGGAGAAGA 59.966 55.0 0.00 0.0 0.0 2.87 F
1082 1110 0.029300 CTTGCGCCATTGGATTACGG 59.971 55.0 6.95 0.0 0.0 4.02 F
1083 1111 0.393132 TTGCGCCATTGGATTACGGA 60.393 50.0 6.95 0.0 0.0 4.69 F
2280 2580 0.466189 CCCTTGACACACACCTTGCT 60.466 55.0 0.00 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2323 0.867746 GCTCAATGTGCGACTGAACA 59.132 50.000 0.00 0.0 38.27 3.18 R
2818 3621 0.190069 AGCCCTCCGGGTCATACATA 59.810 55.000 0.00 0.0 46.51 2.29 R
2959 3762 1.486310 TCGGAGCCTATCACAAGCATT 59.514 47.619 0.00 0.0 0.00 3.56 R
3386 4211 0.324614 CCCATGTCCACAGCAGTGTA 59.675 55.000 8.55 0.0 44.39 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.267860 GGCGAGCGCTGATCCTTG 61.268 66.667 18.48 0.00 41.60 3.61
41 42 3.267860 GCGAGCGCTGATCCTTGG 61.268 66.667 18.48 0.00 38.26 3.61
42 43 3.267860 CGAGCGCTGATCCTTGGC 61.268 66.667 18.48 0.00 0.00 4.52
50 51 4.838152 GATCCTTGGCGGCGCAGA 62.838 66.667 34.36 23.03 0.00 4.26
51 52 4.408821 ATCCTTGGCGGCGCAGAA 62.409 61.111 34.36 23.09 0.00 3.02
54 55 4.093952 CTTGGCGGCGCAGAACAG 62.094 66.667 34.36 16.49 0.00 3.16
63 64 2.669569 GCAGAACAGGCGAGGCAA 60.670 61.111 0.00 0.00 0.00 4.52
64 65 2.260869 GCAGAACAGGCGAGGCAAA 61.261 57.895 0.00 0.00 0.00 3.68
65 66 1.589716 GCAGAACAGGCGAGGCAAAT 61.590 55.000 0.00 0.00 0.00 2.32
66 67 0.883833 CAGAACAGGCGAGGCAAATT 59.116 50.000 0.00 0.00 0.00 1.82
67 68 1.135575 CAGAACAGGCGAGGCAAATTC 60.136 52.381 0.00 0.12 0.00 2.17
68 69 0.881118 GAACAGGCGAGGCAAATTCA 59.119 50.000 0.00 0.00 0.00 2.57
69 70 1.269448 GAACAGGCGAGGCAAATTCAA 59.731 47.619 0.00 0.00 0.00 2.69
70 71 1.327303 ACAGGCGAGGCAAATTCAAA 58.673 45.000 0.00 0.00 0.00 2.69
71 72 1.686052 ACAGGCGAGGCAAATTCAAAA 59.314 42.857 0.00 0.00 0.00 2.44
72 73 2.299867 ACAGGCGAGGCAAATTCAAAAT 59.700 40.909 0.00 0.00 0.00 1.82
73 74 2.925563 CAGGCGAGGCAAATTCAAAATC 59.074 45.455 0.00 0.00 0.00 2.17
74 75 1.919918 GGCGAGGCAAATTCAAAATCG 59.080 47.619 0.00 0.00 0.00 3.34
75 76 1.321445 GCGAGGCAAATTCAAAATCGC 59.679 47.619 0.68 0.68 45.72 4.58
76 77 1.919918 CGAGGCAAATTCAAAATCGCC 59.080 47.619 0.00 0.00 39.90 5.54
78 79 3.236632 AGGCAAATTCAAAATCGCCTC 57.763 42.857 8.87 0.00 46.77 4.70
79 80 2.094026 AGGCAAATTCAAAATCGCCTCC 60.094 45.455 8.87 0.00 46.77 4.30
80 81 1.919918 GCAAATTCAAAATCGCCTCCG 59.080 47.619 0.00 0.00 0.00 4.63
81 82 1.919918 CAAATTCAAAATCGCCTCCGC 59.080 47.619 0.00 0.00 0.00 5.54
82 83 1.463674 AATTCAAAATCGCCTCCGCT 58.536 45.000 0.00 0.00 0.00 5.52
83 84 1.017387 ATTCAAAATCGCCTCCGCTC 58.983 50.000 0.00 0.00 0.00 5.03
84 85 1.024579 TTCAAAATCGCCTCCGCTCC 61.025 55.000 0.00 0.00 0.00 4.70
85 86 2.124695 AAAATCGCCTCCGCTCCC 60.125 61.111 0.00 0.00 0.00 4.30
86 87 4.530857 AAATCGCCTCCGCTCCCG 62.531 66.667 0.00 0.00 0.00 5.14
98 99 4.680237 CTCCCGCACCGTTGAGCA 62.680 66.667 0.00 0.00 0.00 4.26
99 100 4.680237 TCCCGCACCGTTGAGCAG 62.680 66.667 0.00 0.00 0.00 4.24
100 101 4.988598 CCCGCACCGTTGAGCAGT 62.989 66.667 0.00 0.00 0.00 4.40
101 102 3.414700 CCGCACCGTTGAGCAGTC 61.415 66.667 0.00 0.00 0.00 3.51
102 103 2.661537 CGCACCGTTGAGCAGTCA 60.662 61.111 0.00 0.00 0.00 3.41
103 104 2.243957 CGCACCGTTGAGCAGTCAA 61.244 57.895 0.00 0.00 40.55 3.18
139 140 9.912634 CTCCTTGCATCTTTGTTCTTAAAAATA 57.087 29.630 0.00 0.00 0.00 1.40
206 207 6.134535 ACTTGTGGTTGGATGGTTATTAGA 57.865 37.500 0.00 0.00 0.00 2.10
293 297 5.590259 TCTGTATTTATTTCAGGCCTTCTGC 59.410 40.000 0.00 0.00 43.06 4.26
317 321 0.249868 TGTGCGTTCAGTGGGAGAAG 60.250 55.000 0.00 0.00 0.00 2.85
318 322 0.033504 GTGCGTTCAGTGGGAGAAGA 59.966 55.000 0.00 0.00 0.00 2.87
343 353 1.698165 GACGACGAAAGCATCTGTGA 58.302 50.000 0.00 0.00 0.00 3.58
429 439 2.452813 GCGTGTGTGCGTCATAGGG 61.453 63.158 0.00 0.00 0.00 3.53
439 449 1.482593 GCGTCATAGGGATAGGGATGG 59.517 57.143 0.00 0.00 0.00 3.51
440 450 2.888490 GCGTCATAGGGATAGGGATGGA 60.888 54.545 0.00 0.00 0.00 3.41
443 453 3.135530 GTCATAGGGATAGGGATGGATGC 59.864 52.174 0.00 0.00 0.00 3.91
461 471 3.177997 TGCATGTGCGTATGTATGAGT 57.822 42.857 0.01 0.00 45.83 3.41
467 477 3.192633 TGTGCGTATGTATGAGTGTCTGT 59.807 43.478 0.00 0.00 0.00 3.41
493 503 9.616156 TGTTTATACTGTGTTAAAAGAACCAGA 57.384 29.630 10.77 0.00 0.00 3.86
514 524 5.877564 CAGACCAAGAAGAAATCTTAGACCC 59.122 44.000 0.00 0.00 46.80 4.46
515 525 5.788014 AGACCAAGAAGAAATCTTAGACCCT 59.212 40.000 0.00 0.00 46.80 4.34
533 543 1.101331 CTAGACGCCTACTCCGGTTT 58.899 55.000 0.00 0.00 0.00 3.27
546 556 8.464404 GCCTACTCCGGTTTAAGAAAAATAAAT 58.536 33.333 0.00 0.00 0.00 1.40
554 564 8.778640 CGGTTTAAGAAAAATAAATAACCGTCG 58.221 33.333 13.23 0.00 46.87 5.12
567 577 2.943449 ACCGTCGGCAAAAAGAAAAA 57.057 40.000 12.28 0.00 0.00 1.94
740 756 2.333581 CGCCACGGTTTTGGTTCC 59.666 61.111 0.00 0.00 39.09 3.62
755 771 1.067071 GGTTCCTACAAGTAGCGTGCT 60.067 52.381 0.00 0.00 31.95 4.40
758 774 2.100197 TCCTACAAGTAGCGTGCTGAT 58.900 47.619 4.25 0.00 31.95 2.90
806 822 3.465403 CCGCCTCCTCCTCCACTG 61.465 72.222 0.00 0.00 0.00 3.66
820 836 0.469892 CCACTGGGACCTTTTGCCTT 60.470 55.000 0.00 0.00 36.40 4.35
822 838 0.469892 ACTGGGACCTTTTGCCTTGG 60.470 55.000 0.00 0.00 36.40 3.61
823 839 0.469892 CTGGGACCTTTTGCCTTGGT 60.470 55.000 0.00 0.00 36.40 3.67
824 840 0.469144 TGGGACCTTTTGCCTTGGTC 60.469 55.000 0.00 0.00 46.83 4.02
825 841 0.178961 GGGACCTTTTGCCTTGGTCT 60.179 55.000 10.60 0.00 46.76 3.85
826 842 1.248486 GGACCTTTTGCCTTGGTCTC 58.752 55.000 10.60 0.00 46.76 3.36
827 843 1.202940 GGACCTTTTGCCTTGGTCTCT 60.203 52.381 10.60 0.00 46.76 3.10
829 845 1.202940 ACCTTTTGCCTTGGTCTCTCC 60.203 52.381 0.00 0.00 0.00 3.71
830 846 1.074566 CCTTTTGCCTTGGTCTCTCCT 59.925 52.381 0.00 0.00 37.07 3.69
831 847 2.489802 CCTTTTGCCTTGGTCTCTCCTT 60.490 50.000 0.00 0.00 37.07 3.36
853 869 3.910490 GCTGCTCCCGCGATCTCT 61.910 66.667 8.23 0.00 39.65 3.10
925 953 2.163818 TGCTTTGGTTCGTCGATCTT 57.836 45.000 0.00 0.00 0.00 2.40
938 966 3.300066 CGTCGATCTTACTGTTCGTTTCC 59.700 47.826 0.00 0.00 38.57 3.13
951 979 0.727398 CGTTTCCCTCTTCGATTGCC 59.273 55.000 0.00 0.00 0.00 4.52
962 990 2.870372 GATTGCCACCGTGCAGAC 59.130 61.111 0.00 0.00 43.21 3.51
976 1004 1.719725 GCAGACCTGAGATCGAGCGA 61.720 60.000 0.47 0.00 0.00 4.93
1045 1073 1.611977 TCGACTCTGTTCGTTCCATGT 59.388 47.619 0.00 0.00 40.07 3.21
1058 1086 4.933400 TCGTTCCATGTTCTTAGTTTAGGC 59.067 41.667 0.00 0.00 0.00 3.93
1071 1099 1.000717 GTTTAGGCTTTTCTTGCGCCA 60.001 47.619 4.18 0.00 46.14 5.69
1079 1107 3.675775 GCTTTTCTTGCGCCATTGGATTA 60.676 43.478 6.95 0.00 0.00 1.75
1080 1108 3.502191 TTTCTTGCGCCATTGGATTAC 57.498 42.857 6.95 0.00 0.00 1.89
1081 1109 1.013596 TCTTGCGCCATTGGATTACG 58.986 50.000 6.95 1.17 0.00 3.18
1082 1110 0.029300 CTTGCGCCATTGGATTACGG 59.971 55.000 6.95 0.00 0.00 4.02
1083 1111 0.393132 TTGCGCCATTGGATTACGGA 60.393 50.000 6.95 0.00 0.00 4.69
1084 1112 0.813610 TGCGCCATTGGATTACGGAG 60.814 55.000 6.95 0.00 0.00 4.63
1085 1113 0.531974 GCGCCATTGGATTACGGAGA 60.532 55.000 6.95 0.00 0.00 3.71
1086 1114 1.502231 CGCCATTGGATTACGGAGAG 58.498 55.000 6.95 0.00 0.00 3.20
1087 1115 1.068588 CGCCATTGGATTACGGAGAGA 59.931 52.381 6.95 0.00 0.00 3.10
1088 1116 2.760374 GCCATTGGATTACGGAGAGAG 58.240 52.381 6.95 0.00 0.00 3.20
1097 1132 7.507733 TGGATTACGGAGAGAGTAGTTAATC 57.492 40.000 0.00 0.00 0.00 1.75
1098 1133 6.489361 TGGATTACGGAGAGAGTAGTTAATCC 59.511 42.308 9.56 9.56 32.47 3.01
1106 1142 6.287589 AGAGAGTAGTTAATCCAGTGGTTG 57.712 41.667 9.54 0.00 0.00 3.77
1110 1146 3.508845 AGTTAATCCAGTGGTTGCTGT 57.491 42.857 9.54 0.00 34.84 4.40
1159 1195 4.066490 TGTTCGTTTCCCGTCATAATTGT 58.934 39.130 0.00 0.00 37.94 2.71
1186 1229 0.466739 TCGGGCTCGGCACTAGATTA 60.467 55.000 5.94 0.00 36.95 1.75
1221 1264 5.133221 GGGTTATCATACTTGCCATGAACT 58.867 41.667 0.00 0.00 36.08 3.01
1265 1315 0.734889 GCTGCATTGGCTAACGATGT 59.265 50.000 0.00 0.00 42.10 3.06
1331 1489 2.774799 CGGCTTGCCCAACCATAGC 61.775 63.158 6.02 0.00 0.00 2.97
1338 1496 3.660970 TGCCCAACCATAGCTAATTCA 57.339 42.857 0.00 0.00 0.00 2.57
1360 1518 2.673368 GTGATCTCGTTAGTTTGCCTGG 59.327 50.000 0.00 0.00 0.00 4.45
1446 1695 9.254133 CGTTGTCATAGTTCTCATATTCTCATT 57.746 33.333 0.00 0.00 0.00 2.57
1510 1798 6.663944 ATTCTCACTTTTTGTATCGGCTAC 57.336 37.500 0.00 0.00 0.00 3.58
1534 1822 6.750039 ACATAATTTTGTATTTGCGTAGGTGC 59.250 34.615 0.00 0.00 0.00 5.01
1562 1850 2.624838 CTGGCAGTGGAAACAAGAATGT 59.375 45.455 6.28 0.00 46.06 2.71
1769 2058 4.100963 TGCAGGTTTCTGTTCTTGAGACTA 59.899 41.667 0.00 0.00 42.78 2.59
1773 2062 4.991687 GGTTTCTGTTCTTGAGACTACTGG 59.008 45.833 0.00 0.00 0.00 4.00
1787 2076 2.369532 ACTACTGGCGGTCCTGTTTTTA 59.630 45.455 0.06 0.00 43.26 1.52
1856 2145 9.455847 GATGCTTCTTTAATATTTCATGGACAC 57.544 33.333 0.00 0.00 0.00 3.67
1872 2161 7.819644 TCATGGACACTTATTTTGATTCAGTG 58.180 34.615 0.00 0.00 40.65 3.66
1873 2162 7.665145 TCATGGACACTTATTTTGATTCAGTGA 59.335 33.333 4.67 0.00 38.59 3.41
1887 2180 6.634805 TGATTCAGTGATTAACTCTGTCTCC 58.365 40.000 0.00 0.00 36.83 3.71
1946 2241 3.056035 ACCCACTTTACGGATCTTCACTC 60.056 47.826 0.00 0.00 0.00 3.51
1947 2242 3.179830 CCACTTTACGGATCTTCACTCG 58.820 50.000 0.00 0.00 0.00 4.18
1982 2277 8.246180 GTGAGTGTTGTTTGATATTCATTCCAT 58.754 33.333 0.00 0.00 0.00 3.41
2064 2360 5.682234 TGAGCAATGGATTGACTTCTCTA 57.318 39.130 3.47 0.00 40.14 2.43
2132 2428 5.843969 TCTAGGATTCTACCCATATGTTGCA 59.156 40.000 1.24 0.00 0.00 4.08
2143 2439 4.009675 CCATATGTTGCAGTGGTAAGTGT 58.990 43.478 1.24 0.00 0.00 3.55
2253 2553 3.988976 ATTACTGCCTTGAAGAGAGCA 57.011 42.857 0.00 0.00 32.81 4.26
2280 2580 0.466189 CCCTTGACACACACCTTGCT 60.466 55.000 0.00 0.00 0.00 3.91
2493 2793 2.357952 GTCTGTCCCACCAGTTCAAAAC 59.642 50.000 0.00 0.00 34.02 2.43
2542 2842 2.528564 CCAAGGATGCCAAGAAGGAAA 58.471 47.619 0.00 0.00 41.22 3.13
2579 2879 0.844221 AAGAAGGAGGCCCAGAAGCT 60.844 55.000 0.00 0.00 33.88 3.74
2592 2892 2.027745 CCAGAAGCTAGAGCCAGTTGAA 60.028 50.000 0.00 0.00 43.38 2.69
2612 2912 2.488204 AAAGCAGAGGAGGAAGAAGC 57.512 50.000 0.00 0.00 0.00 3.86
2689 2989 6.070951 TGATCCTTGATGAATGGAAGAAGT 57.929 37.500 0.00 0.00 33.20 3.01
2818 3621 2.274760 GCTGCAGGCTTCTGGGAT 59.725 61.111 17.12 0.00 38.87 3.85
2902 3705 2.699954 GTGTCCTTCGTGACCATGAAT 58.300 47.619 5.25 0.00 35.94 2.57
2954 3757 2.434359 GCCGCAAGTACGCCTTCT 60.434 61.111 0.00 0.00 0.00 2.85
2959 3762 1.519408 GCAAGTACGCCTTCTGGAAA 58.481 50.000 0.00 0.00 34.57 3.13
3204 4007 3.462021 AGTGATCTATTCTCTTTGCGCC 58.538 45.455 4.18 0.00 0.00 6.53
3443 4268 4.946646 AGTGGATATGGGATTTGGTTTGT 58.053 39.130 0.00 0.00 0.00 2.83
3506 6058 5.871396 TTATTCAGGTGTATCTGGAGTCC 57.129 43.478 0.73 0.73 35.58 3.85
3510 6062 1.285373 AGGTGTATCTGGAGTCCGAGT 59.715 52.381 4.30 0.00 0.00 4.18
3514 6066 4.261656 GGTGTATCTGGAGTCCGAGTTATG 60.262 50.000 4.30 0.00 0.00 1.90
3529 6081 5.393787 CCGAGTTATGTGTAGTTCCTGCTTA 60.394 44.000 0.00 0.00 0.00 3.09
3553 6105 4.810491 GCTTTTTGTTCTGATGGCTTGAAA 59.190 37.500 0.00 0.00 0.00 2.69
3613 6168 9.136323 ACATCCAGATTTAAAATTGATACTCCC 57.864 33.333 0.00 0.00 0.00 4.30
3614 6169 9.359653 CATCCAGATTTAAAATTGATACTCCCT 57.640 33.333 0.00 0.00 0.00 4.20
3615 6170 9.942526 ATCCAGATTTAAAATTGATACTCCCTT 57.057 29.630 0.00 0.00 0.00 3.95
3616 6171 9.408648 TCCAGATTTAAAATTGATACTCCCTTC 57.591 33.333 0.00 0.00 0.00 3.46
3617 6172 8.345565 CCAGATTTAAAATTGATACTCCCTTCG 58.654 37.037 0.00 0.00 0.00 3.79
3618 6173 8.893727 CAGATTTAAAATTGATACTCCCTTCGT 58.106 33.333 0.00 0.00 0.00 3.85
3620 6175 9.717892 GATTTAAAATTGATACTCCCTTCGTTC 57.282 33.333 0.00 0.00 0.00 3.95
3621 6176 7.619964 TTAAAATTGATACTCCCTTCGTTCC 57.380 36.000 0.00 0.00 0.00 3.62
3623 6178 6.555463 AAATTGATACTCCCTTCGTTCCTA 57.445 37.500 0.00 0.00 0.00 2.94
3624 6179 6.555463 AATTGATACTCCCTTCGTTCCTAA 57.445 37.500 0.00 0.00 0.00 2.69
3625 6180 6.555463 ATTGATACTCCCTTCGTTCCTAAA 57.445 37.500 0.00 0.00 0.00 1.85
3626 6181 6.555463 TTGATACTCCCTTCGTTCCTAAAT 57.445 37.500 0.00 0.00 0.00 1.40
3627 6182 7.664552 TTGATACTCCCTTCGTTCCTAAATA 57.335 36.000 0.00 0.00 0.00 1.40
3628 6183 7.850935 TGATACTCCCTTCGTTCCTAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
3629 6184 8.258850 TGATACTCCCTTCGTTCCTAAATATT 57.741 34.615 0.00 0.00 0.00 1.28
3630 6185 8.711170 TGATACTCCCTTCGTTCCTAAATATTT 58.289 33.333 5.89 5.89 0.00 1.40
3631 6186 8.904099 ATACTCCCTTCGTTCCTAAATATTTG 57.096 34.615 11.05 1.40 0.00 2.32
3632 6187 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
3633 6188 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
3634 6189 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
3635 6190 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
3636 6191 7.886446 TCCCTTCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
3637 6192 8.520351 CCCTTCGTTCCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
3638 6193 9.908152 CCTTCGTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
3669 6224 9.640963 ATTTCAACAAGTGACTACATACTCTAC 57.359 33.333 0.00 0.00 35.39 2.59
3670 6225 7.754851 TCAACAAGTGACTACATACTCTACA 57.245 36.000 0.00 0.00 0.00 2.74
3671 6226 8.349568 TCAACAAGTGACTACATACTCTACAT 57.650 34.615 0.00 0.00 0.00 2.29
3672 6227 9.457436 TCAACAAGTGACTACATACTCTACATA 57.543 33.333 0.00 0.00 0.00 2.29
3673 6228 9.504710 CAACAAGTGACTACATACTCTACATAC 57.495 37.037 0.00 0.00 0.00 2.39
3674 6229 7.917597 ACAAGTGACTACATACTCTACATACG 58.082 38.462 0.00 0.00 0.00 3.06
3675 6230 7.767659 ACAAGTGACTACATACTCTACATACGA 59.232 37.037 0.00 0.00 0.00 3.43
3676 6231 8.610035 CAAGTGACTACATACTCTACATACGAA 58.390 37.037 0.00 0.00 0.00 3.85
3677 6232 8.367943 AGTGACTACATACTCTACATACGAAG 57.632 38.462 0.00 0.00 0.00 3.79
3678 6233 7.041916 AGTGACTACATACTCTACATACGAAGC 60.042 40.741 0.00 0.00 0.00 3.86
3679 6234 6.764560 TGACTACATACTCTACATACGAAGCA 59.235 38.462 0.00 0.00 0.00 3.91
3680 6235 7.281549 TGACTACATACTCTACATACGAAGCAA 59.718 37.037 0.00 0.00 0.00 3.91
3681 6236 7.993101 ACTACATACTCTACATACGAAGCAAA 58.007 34.615 0.00 0.00 0.00 3.68
3682 6237 8.464404 ACTACATACTCTACATACGAAGCAAAA 58.536 33.333 0.00 0.00 0.00 2.44
3683 6238 9.464714 CTACATACTCTACATACGAAGCAAAAT 57.535 33.333 0.00 0.00 0.00 1.82
3684 6239 8.131455 ACATACTCTACATACGAAGCAAAATG 57.869 34.615 0.00 0.00 0.00 2.32
3685 6240 7.979537 ACATACTCTACATACGAAGCAAAATGA 59.020 33.333 0.00 0.00 0.00 2.57
3686 6241 6.893958 ACTCTACATACGAAGCAAAATGAG 57.106 37.500 0.00 0.00 0.00 2.90
3687 6242 6.398918 ACTCTACATACGAAGCAAAATGAGT 58.601 36.000 0.00 0.00 0.00 3.41
3688 6243 6.311445 ACTCTACATACGAAGCAAAATGAGTG 59.689 38.462 0.00 0.00 0.00 3.51
3689 6244 6.394809 TCTACATACGAAGCAAAATGAGTGA 58.605 36.000 0.00 0.00 0.00 3.41
3690 6245 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
3691 6246 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
3692 6247 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
3693 6248 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
3694 6249 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
3695 6250 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
3696 6251 5.163953 ACGAAGCAAAATGAGTGAATCTACG 60.164 40.000 0.00 0.00 0.00 3.51
3697 6252 4.606457 AGCAAAATGAGTGAATCTACGC 57.394 40.909 0.00 0.00 0.00 4.42
3698 6253 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
3699 6254 4.697352 AGCAAAATGAGTGAATCTACGCTT 59.303 37.500 0.00 0.00 0.00 4.68
3700 6255 5.182001 AGCAAAATGAGTGAATCTACGCTTT 59.818 36.000 0.00 0.00 0.00 3.51
3701 6256 6.371548 AGCAAAATGAGTGAATCTACGCTTTA 59.628 34.615 0.00 0.00 0.00 1.85
3702 6257 7.021196 GCAAAATGAGTGAATCTACGCTTTAA 58.979 34.615 0.00 0.00 0.00 1.52
3703 6258 7.537306 GCAAAATGAGTGAATCTACGCTTTAAA 59.463 33.333 0.00 0.00 0.00 1.52
3704 6259 9.393249 CAAAATGAGTGAATCTACGCTTTAAAA 57.607 29.630 0.00 0.00 0.00 1.52
3709 6264 8.335356 TGAGTGAATCTACGCTTTAAAATATGC 58.665 33.333 0.00 0.00 0.00 3.14
3710 6265 7.639945 AGTGAATCTACGCTTTAAAATATGCC 58.360 34.615 0.00 0.00 0.00 4.40
3711 6266 7.499232 AGTGAATCTACGCTTTAAAATATGCCT 59.501 33.333 0.00 0.00 0.00 4.75
3712 6267 8.770828 GTGAATCTACGCTTTAAAATATGCCTA 58.229 33.333 0.00 0.00 0.00 3.93
3713 6268 8.770828 TGAATCTACGCTTTAAAATATGCCTAC 58.229 33.333 0.00 0.00 0.00 3.18
3714 6269 8.671384 AATCTACGCTTTAAAATATGCCTACA 57.329 30.769 0.00 0.00 0.00 2.74
3715 6270 8.848474 ATCTACGCTTTAAAATATGCCTACAT 57.152 30.769 0.00 0.00 40.49 2.29
3716 6271 8.083462 TCTACGCTTTAAAATATGCCTACATG 57.917 34.615 0.00 0.00 37.04 3.21
3717 6272 5.519722 ACGCTTTAAAATATGCCTACATGC 58.480 37.500 0.00 0.00 37.04 4.06
3718 6273 5.067153 ACGCTTTAAAATATGCCTACATGCA 59.933 36.000 0.00 0.00 46.94 3.96
3730 6285 5.868454 TGCCTACATGCATCTATATGTTGT 58.132 37.500 0.00 0.00 38.41 3.32
3731 6286 5.702209 TGCCTACATGCATCTATATGTTGTG 59.298 40.000 0.00 0.00 38.41 3.33
3732 6287 5.702670 GCCTACATGCATCTATATGTTGTGT 59.297 40.000 0.00 0.00 38.41 3.72
3733 6288 6.205464 GCCTACATGCATCTATATGTTGTGTT 59.795 38.462 0.00 0.00 38.41 3.32
3734 6289 7.571983 GCCTACATGCATCTATATGTTGTGTTC 60.572 40.741 0.00 0.00 38.41 3.18
3735 6290 7.442062 CCTACATGCATCTATATGTTGTGTTCA 59.558 37.037 0.00 0.00 38.41 3.18
3736 6291 7.812690 ACATGCATCTATATGTTGTGTTCAT 57.187 32.000 0.00 0.00 34.00 2.57
3737 6292 8.229253 ACATGCATCTATATGTTGTGTTCATT 57.771 30.769 0.00 0.00 34.00 2.57
3738 6293 8.689061 ACATGCATCTATATGTTGTGTTCATTT 58.311 29.630 0.00 0.00 34.00 2.32
3739 6294 8.964150 CATGCATCTATATGTTGTGTTCATTTG 58.036 33.333 0.00 0.00 35.38 2.32
3740 6295 8.278729 TGCATCTATATGTTGTGTTCATTTGA 57.721 30.769 0.00 0.00 35.38 2.69
3741 6296 8.738106 TGCATCTATATGTTGTGTTCATTTGAA 58.262 29.630 0.00 0.00 35.38 2.69
3742 6297 9.571810 GCATCTATATGTTGTGTTCATTTGAAA 57.428 29.630 0.00 0.00 34.10 2.69
3750 6305 8.219546 TGTTGTGTTCATTTGAAATGTCTAGA 57.780 30.769 16.62 0.00 35.58 2.43
3751 6306 8.681806 TGTTGTGTTCATTTGAAATGTCTAGAA 58.318 29.630 16.62 7.03 35.58 2.10
3752 6307 9.515020 GTTGTGTTCATTTGAAATGTCTAGAAA 57.485 29.630 16.62 1.15 35.58 2.52
3753 6308 9.734620 TTGTGTTCATTTGAAATGTCTAGAAAG 57.265 29.630 16.62 0.00 35.58 2.62
3754 6309 9.119418 TGTGTTCATTTGAAATGTCTAGAAAGA 57.881 29.630 16.62 0.02 35.58 2.52
3755 6310 9.387123 GTGTTCATTTGAAATGTCTAGAAAGAC 57.613 33.333 16.62 8.15 42.91 3.01
3770 6325 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
3771 6326 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
3772 6327 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
3773 6328 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
3774 6329 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
3775 6330 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
3776 6331 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
3777 6332 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
3778 6333 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3779 6334 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3780 6335 1.961133 TTTGGGAACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3781 6336 1.961133 TTGGGAACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
3782 6337 2.852714 TGGGAACGGAGGGAGTATTA 57.147 50.000 0.00 0.00 0.00 0.98
3783 6338 3.119009 TGGGAACGGAGGGAGTATTAA 57.881 47.619 0.00 0.00 0.00 1.40
3784 6339 3.452878 TGGGAACGGAGGGAGTATTAAA 58.547 45.455 0.00 0.00 0.00 1.52
3785 6340 3.198417 TGGGAACGGAGGGAGTATTAAAC 59.802 47.826 0.00 0.00 0.00 2.01
3786 6341 3.198417 GGGAACGGAGGGAGTATTAAACA 59.802 47.826 0.00 0.00 0.00 2.83
3787 6342 4.323715 GGGAACGGAGGGAGTATTAAACAA 60.324 45.833 0.00 0.00 0.00 2.83
3813 6368 1.335872 CGCCCAGGAAAACATGACAAC 60.336 52.381 0.00 0.00 0.00 3.32
3816 6371 2.558359 CCCAGGAAAACATGACAACTCC 59.442 50.000 0.00 0.00 0.00 3.85
3817 6372 3.221771 CCAGGAAAACATGACAACTCCA 58.778 45.455 0.00 0.00 0.00 3.86
3818 6373 3.828451 CCAGGAAAACATGACAACTCCAT 59.172 43.478 0.00 0.00 0.00 3.41
3819 6374 5.009631 CCAGGAAAACATGACAACTCCATA 58.990 41.667 0.00 0.00 0.00 2.74
3946 6520 9.709495 CCATTTTCAAAATGTGATAAAAGAGGA 57.291 29.630 19.35 0.00 35.70 3.71
3962 6536 5.429957 AAGAGGATGCATTTTATCGAAGC 57.570 39.130 0.00 0.00 0.00 3.86
4063 6637 5.336213 GCATGTGCTAAATATAAGCCTGCAT 60.336 40.000 16.26 11.46 39.30 3.96
4068 6642 7.706179 TGTGCTAAATATAAGCCTGCATTTTTC 59.294 33.333 7.35 0.00 39.30 2.29
4185 6760 0.916358 CTCAGAATCACCCCCACCCT 60.916 60.000 0.00 0.00 0.00 4.34
4186 6761 1.207488 TCAGAATCACCCCCACCCTG 61.207 60.000 0.00 0.00 0.00 4.45
4187 6762 2.043953 GAATCACCCCCACCCTGC 60.044 66.667 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.880537 AAGGATCAGCGCTCGCCG 62.881 66.667 7.13 0.00 43.17 6.46
23 24 3.267860 CAAGGATCAGCGCTCGCC 61.268 66.667 7.13 9.54 43.17 5.54
24 25 3.267860 CCAAGGATCAGCGCTCGC 61.268 66.667 7.13 6.09 42.33 5.03
25 26 3.267860 GCCAAGGATCAGCGCTCG 61.268 66.667 7.13 3.29 0.00 5.03
26 27 3.267860 CGCCAAGGATCAGCGCTC 61.268 66.667 7.13 0.00 43.72 5.03
33 34 4.838152 TCTGCGCCGCCAAGGATC 62.838 66.667 6.63 0.00 45.00 3.36
34 35 4.408821 TTCTGCGCCGCCAAGGAT 62.409 61.111 6.63 0.00 45.00 3.24
37 38 4.093952 CTGTTCTGCGCCGCCAAG 62.094 66.667 6.63 0.00 0.00 3.61
46 47 1.589716 ATTTGCCTCGCCTGTTCTGC 61.590 55.000 0.00 0.00 0.00 4.26
47 48 0.883833 AATTTGCCTCGCCTGTTCTG 59.116 50.000 0.00 0.00 0.00 3.02
48 49 1.168714 GAATTTGCCTCGCCTGTTCT 58.831 50.000 0.00 0.00 0.00 3.01
49 50 0.881118 TGAATTTGCCTCGCCTGTTC 59.119 50.000 0.00 0.00 0.00 3.18
50 51 1.327303 TTGAATTTGCCTCGCCTGTT 58.673 45.000 0.00 0.00 0.00 3.16
51 52 1.327303 TTTGAATTTGCCTCGCCTGT 58.673 45.000 0.00 0.00 0.00 4.00
52 53 2.437200 TTTTGAATTTGCCTCGCCTG 57.563 45.000 0.00 0.00 0.00 4.85
53 54 2.415893 CGATTTTGAATTTGCCTCGCCT 60.416 45.455 0.00 0.00 0.00 5.52
54 55 1.919918 CGATTTTGAATTTGCCTCGCC 59.080 47.619 0.00 0.00 0.00 5.54
55 56 1.321445 GCGATTTTGAATTTGCCTCGC 59.679 47.619 0.00 0.00 42.38 5.03
56 57 1.919918 GGCGATTTTGAATTTGCCTCG 59.080 47.619 8.84 0.00 39.38 4.63
59 60 2.270923 GGAGGCGATTTTGAATTTGCC 58.729 47.619 8.26 8.26 42.76 4.52
60 61 1.919918 CGGAGGCGATTTTGAATTTGC 59.080 47.619 0.00 0.00 0.00 3.68
61 62 1.919918 GCGGAGGCGATTTTGAATTTG 59.080 47.619 0.00 0.00 0.00 2.32
62 63 1.818674 AGCGGAGGCGATTTTGAATTT 59.181 42.857 0.00 0.00 46.35 1.82
63 64 1.401905 GAGCGGAGGCGATTTTGAATT 59.598 47.619 0.00 0.00 46.35 2.17
64 65 1.017387 GAGCGGAGGCGATTTTGAAT 58.983 50.000 0.00 0.00 46.35 2.57
65 66 1.024579 GGAGCGGAGGCGATTTTGAA 61.025 55.000 0.00 0.00 46.35 2.69
66 67 1.449601 GGAGCGGAGGCGATTTTGA 60.450 57.895 0.00 0.00 46.35 2.69
67 68 2.472909 GGGAGCGGAGGCGATTTTG 61.473 63.158 0.00 0.00 46.35 2.44
68 69 2.124695 GGGAGCGGAGGCGATTTT 60.125 61.111 0.00 0.00 46.35 1.82
69 70 4.530857 CGGGAGCGGAGGCGATTT 62.531 66.667 0.00 0.00 46.35 2.17
81 82 4.680237 TGCTCAACGGTGCGGGAG 62.680 66.667 0.00 0.00 36.33 4.30
82 83 4.680237 CTGCTCAACGGTGCGGGA 62.680 66.667 0.00 0.00 36.49 5.14
83 84 4.988598 ACTGCTCAACGGTGCGGG 62.989 66.667 0.00 0.00 42.71 6.13
84 85 3.414700 GACTGCTCAACGGTGCGG 61.415 66.667 0.00 0.00 43.73 5.69
85 86 2.243957 TTGACTGCTCAACGGTGCG 61.244 57.895 0.00 0.00 38.28 5.34
86 87 1.279840 GTTGACTGCTCAACGGTGC 59.720 57.895 0.00 0.00 45.29 5.01
92 93 0.033504 GTCGAGGGTTGACTGCTCAA 59.966 55.000 0.00 0.00 33.76 3.02
93 94 1.666011 GTCGAGGGTTGACTGCTCA 59.334 57.895 0.00 0.00 33.54 4.26
94 95 1.444553 CGTCGAGGGTTGACTGCTC 60.445 63.158 0.00 0.00 34.17 4.26
95 96 2.651361 CGTCGAGGGTTGACTGCT 59.349 61.111 0.00 0.00 34.17 4.24
96 97 3.112709 GCGTCGAGGGTTGACTGC 61.113 66.667 7.31 0.00 34.17 4.40
97 98 1.444553 GAGCGTCGAGGGTTGACTG 60.445 63.158 11.52 0.00 34.17 3.51
98 99 2.637383 GGAGCGTCGAGGGTTGACT 61.637 63.158 11.52 0.00 34.17 3.41
99 100 2.126031 GGAGCGTCGAGGGTTGAC 60.126 66.667 11.52 1.96 0.00 3.18
100 101 1.906824 AAGGAGCGTCGAGGGTTGA 60.907 57.895 11.52 0.00 0.00 3.18
101 102 1.738099 CAAGGAGCGTCGAGGGTTG 60.738 63.158 11.52 2.28 0.00 3.77
102 103 2.657237 CAAGGAGCGTCGAGGGTT 59.343 61.111 11.52 0.00 0.00 4.11
103 104 4.070552 GCAAGGAGCGTCGAGGGT 62.071 66.667 9.92 9.92 0.00 4.34
139 140 6.433093 AGGCTAACACGTTTAGGATGATTTTT 59.567 34.615 14.90 0.00 0.00 1.94
206 207 1.384191 GACTGGGGCCATTGTCCTT 59.616 57.895 4.39 0.00 36.12 3.36
254 258 1.317613 ACAGAAAAATGCGAGCACCA 58.682 45.000 0.00 0.00 0.00 4.17
293 297 0.039256 CCCACTGAACGCACATTTGG 60.039 55.000 0.00 0.00 0.00 3.28
295 299 1.202758 TCTCCCACTGAACGCACATTT 60.203 47.619 0.00 0.00 0.00 2.32
343 353 5.970592 TCATCTTGAGATTGATGAAGTCGT 58.029 37.500 3.55 0.00 43.90 4.34
429 439 2.089980 GCACATGCATCCATCCCTATC 58.910 52.381 0.00 0.00 41.59 2.08
439 449 3.742882 ACTCATACATACGCACATGCATC 59.257 43.478 0.00 0.00 42.21 3.91
440 450 3.495753 CACTCATACATACGCACATGCAT 59.504 43.478 4.49 0.00 42.21 3.96
443 453 4.207841 CAGACACTCATACATACGCACATG 59.792 45.833 0.00 0.00 0.00 3.21
461 471 9.602568 TCTTTTAACACAGTATAAACACAGACA 57.397 29.630 0.00 0.00 0.00 3.41
467 477 9.616156 TCTGGTTCTTTTAACACAGTATAAACA 57.384 29.630 0.00 0.00 0.00 2.83
493 503 6.960542 TCTAGGGTCTAAGATTTCTTCTTGGT 59.039 38.462 0.00 0.00 44.54 3.67
514 524 1.101331 AAACCGGAGTAGGCGTCTAG 58.899 55.000 9.46 0.00 33.69 2.43
515 525 2.418368 TAAACCGGAGTAGGCGTCTA 57.582 50.000 9.46 0.00 33.69 2.59
533 543 7.375106 TGCCGACGGTTATTTATTTTTCTTA 57.625 32.000 16.73 0.00 0.00 2.10
546 556 4.367386 TTTTTCTTTTTGCCGACGGTTA 57.633 36.364 16.73 1.96 0.00 2.85
567 577 1.954382 GAGGCCGGTTCTTTGTTTCTT 59.046 47.619 1.90 0.00 0.00 2.52
690 702 3.660111 AAGTTTGCCGCCACGAGC 61.660 61.111 0.00 0.00 38.52 5.03
734 750 1.337447 GCACGCTACTTGTAGGAACCA 60.337 52.381 9.49 0.00 0.00 3.67
740 756 2.196749 CCATCAGCACGCTACTTGTAG 58.803 52.381 3.60 3.60 0.00 2.74
798 814 0.895559 GCAAAAGGTCCCAGTGGAGG 60.896 60.000 11.95 0.00 42.85 4.30
800 816 1.152830 GGCAAAAGGTCCCAGTGGA 59.847 57.895 11.95 0.00 38.75 4.02
801 817 0.469892 AAGGCAAAAGGTCCCAGTGG 60.470 55.000 0.63 0.63 0.00 4.00
806 822 2.351777 GACCAAGGCAAAAGGTCCC 58.648 57.895 0.00 0.00 44.72 4.46
820 836 0.972134 CAGCACAGAAGGAGAGACCA 59.028 55.000 0.00 0.00 42.04 4.02
822 838 0.607620 AGCAGCACAGAAGGAGAGAC 59.392 55.000 0.00 0.00 0.00 3.36
823 839 0.894141 GAGCAGCACAGAAGGAGAGA 59.106 55.000 0.00 0.00 0.00 3.10
824 840 0.108233 GGAGCAGCACAGAAGGAGAG 60.108 60.000 0.00 0.00 0.00 3.20
825 841 1.548357 GGGAGCAGCACAGAAGGAGA 61.548 60.000 0.00 0.00 0.00 3.71
826 842 1.078567 GGGAGCAGCACAGAAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
827 843 2.947532 CGGGAGCAGCACAGAAGGA 61.948 63.158 0.00 0.00 0.00 3.36
925 953 2.886523 TCGAAGAGGGAAACGAACAGTA 59.113 45.455 0.00 0.00 0.00 2.74
938 966 1.079127 ACGGTGGCAATCGAAGAGG 60.079 57.895 16.52 0.00 43.63 3.69
951 979 0.459237 GATCTCAGGTCTGCACGGTG 60.459 60.000 3.15 3.15 0.00 4.94
962 990 0.886938 TAGCCTCGCTCGATCTCAGG 60.887 60.000 0.00 0.00 40.44 3.86
1005 1033 3.809832 CGAATGAAGAAACACTCACCAGT 59.190 43.478 0.00 0.00 0.00 4.00
1045 1073 5.562113 GCGCAAGAAAAGCCTAAACTAAGAA 60.562 40.000 0.30 0.00 43.02 2.52
1058 1086 2.660189 ATCCAATGGCGCAAGAAAAG 57.340 45.000 10.83 0.00 43.02 2.27
1071 1099 7.893124 TTAACTACTCTCTCCGTAATCCAAT 57.107 36.000 0.00 0.00 0.00 3.16
1079 1107 4.641094 CACTGGATTAACTACTCTCTCCGT 59.359 45.833 0.00 0.00 0.00 4.69
1080 1108 4.036971 CCACTGGATTAACTACTCTCTCCG 59.963 50.000 0.00 0.00 0.00 4.63
1081 1109 4.957327 ACCACTGGATTAACTACTCTCTCC 59.043 45.833 0.71 0.00 0.00 3.71
1082 1110 6.334202 CAACCACTGGATTAACTACTCTCTC 58.666 44.000 0.71 0.00 0.00 3.20
1083 1111 5.337652 GCAACCACTGGATTAACTACTCTCT 60.338 44.000 0.71 0.00 0.00 3.10
1084 1112 4.870991 GCAACCACTGGATTAACTACTCTC 59.129 45.833 0.71 0.00 0.00 3.20
1085 1113 4.532521 AGCAACCACTGGATTAACTACTCT 59.467 41.667 0.71 0.00 0.00 3.24
1086 1114 4.631813 CAGCAACCACTGGATTAACTACTC 59.368 45.833 0.71 0.00 33.85 2.59
1087 1115 4.041691 ACAGCAACCACTGGATTAACTACT 59.958 41.667 0.71 0.00 42.21 2.57
1088 1116 4.154195 CACAGCAACCACTGGATTAACTAC 59.846 45.833 0.71 0.00 42.21 2.73
1097 1132 1.037030 AACCACACAGCAACCACTGG 61.037 55.000 0.00 0.00 42.21 4.00
1098 1133 0.817013 AAACCACACAGCAACCACTG 59.183 50.000 0.00 0.00 43.59 3.66
1106 1142 3.316308 AGATCAAGTTCAAACCACACAGC 59.684 43.478 0.00 0.00 0.00 4.40
1110 1146 2.622942 GCCAGATCAAGTTCAAACCACA 59.377 45.455 0.00 0.00 0.00 4.17
1159 1195 2.861101 GCCGAGCCCGAGATCATGA 61.861 63.158 0.00 0.00 38.22 3.07
1186 1229 3.337694 TGATAACCCCAACGAACGAAT 57.662 42.857 0.14 0.00 0.00 3.34
1221 1264 3.570540 AGCAGACAGGCTCTATACATCA 58.429 45.455 0.00 0.00 41.05 3.07
1265 1315 3.627395 ACAGAACGATGGCAAGGAATA 57.373 42.857 0.00 0.00 0.00 1.75
1325 1376 5.777802 ACGAGATCACTGAATTAGCTATGG 58.222 41.667 0.00 0.00 0.00 2.74
1331 1489 7.394872 GCAAACTAACGAGATCACTGAATTAG 58.605 38.462 0.00 0.00 0.00 1.73
1338 1496 3.589988 CAGGCAAACTAACGAGATCACT 58.410 45.455 0.00 0.00 0.00 3.41
1389 1638 3.702045 TGTTACCAACAGAAAAGGGGTTG 59.298 43.478 0.00 0.00 41.10 3.77
1395 1644 5.634859 GGATGCAATGTTACCAACAGAAAAG 59.365 40.000 0.00 0.00 45.95 2.27
1400 1649 2.159393 CGGGATGCAATGTTACCAACAG 60.159 50.000 0.00 0.00 45.95 3.16
1447 1696 9.574516 GAAAGGGTGGTAATGATACTATGATTT 57.425 33.333 0.00 0.00 32.36 2.17
1506 1794 8.126700 ACCTACGCAAATACAAAATTATGTAGC 58.873 33.333 0.00 0.00 39.04 3.58
1510 1798 6.972328 AGCACCTACGCAAATACAAAATTATG 59.028 34.615 0.00 0.00 0.00 1.90
1754 2043 2.229062 CGCCAGTAGTCTCAAGAACAGA 59.771 50.000 0.00 0.00 0.00 3.41
1769 2058 2.158726 TCTTAAAAACAGGACCGCCAGT 60.159 45.455 0.00 0.00 35.08 4.00
1773 2062 1.877443 TGCTCTTAAAAACAGGACCGC 59.123 47.619 0.00 0.00 0.00 5.68
1844 2133 9.865321 CTGAATCAAAATAAGTGTCCATGAAAT 57.135 29.630 0.00 0.00 0.00 2.17
1868 2157 4.464244 TGAGGGAGACAGAGTTAATCACTG 59.536 45.833 0.00 0.00 39.90 3.66
1872 2161 6.462347 GGAAGATGAGGGAGACAGAGTTAATC 60.462 46.154 0.00 0.00 0.00 1.75
1873 2162 5.365314 GGAAGATGAGGGAGACAGAGTTAAT 59.635 44.000 0.00 0.00 0.00 1.40
1882 2171 5.423886 CAACTTTAGGAAGATGAGGGAGAC 58.576 45.833 0.00 0.00 37.74 3.36
1887 2180 3.868077 CGAGCAACTTTAGGAAGATGAGG 59.132 47.826 1.29 0.00 37.74 3.86
1947 2242 4.271533 TCAAACAACACTCACGTATTCCAC 59.728 41.667 0.00 0.00 0.00 4.02
2027 2323 0.867746 GCTCAATGTGCGACTGAACA 59.132 50.000 0.00 0.00 38.27 3.18
2029 2325 1.592064 TTGCTCAATGTGCGACTGAA 58.408 45.000 2.77 0.00 0.00 3.02
2034 2330 1.753930 ATCCATTGCTCAATGTGCGA 58.246 45.000 18.07 10.68 44.97 5.10
2064 2360 6.626279 AATGTTAGCATCAACCTCCGTGGT 62.626 45.833 0.00 0.00 42.30 4.16
2132 2428 2.501723 CCTCATAGCCACACTTACCACT 59.498 50.000 0.00 0.00 0.00 4.00
2143 2439 3.966665 TGTACATGATCACCTCATAGCCA 59.033 43.478 0.00 0.00 42.91 4.75
2280 2580 4.586421 TGCCCAACAAGATATGTGTTTGAA 59.414 37.500 0.00 0.00 42.99 2.69
2493 2793 3.562779 CTTTGGTGCCGCAGCCTTG 62.563 63.158 19.45 5.85 38.69 3.61
2542 2842 4.170468 TCTTGGCTTCCTTCTTCTTTGT 57.830 40.909 0.00 0.00 0.00 2.83
2579 2879 4.067896 CTCTGCTTTTTCAACTGGCTCTA 58.932 43.478 0.00 0.00 0.00 2.43
2592 2892 2.789213 GCTTCTTCCTCCTCTGCTTTT 58.211 47.619 0.00 0.00 0.00 2.27
2612 2912 1.594021 GGCTTTGGTTTTGGTGCCG 60.594 57.895 0.00 0.00 0.00 5.69
2689 2989 2.506231 TGGTCTTGGTGTTGGAGTACAA 59.494 45.455 0.00 0.00 36.54 2.41
2818 3621 0.190069 AGCCCTCCGGGTCATACATA 59.810 55.000 0.00 0.00 46.51 2.29
2902 3705 1.912220 CAGGAATCCGCCCACCTTA 59.088 57.895 0.00 0.00 0.00 2.69
2954 3757 3.696051 GAGCCTATCACAAGCATTTTCCA 59.304 43.478 0.00 0.00 0.00 3.53
2959 3762 1.486310 TCGGAGCCTATCACAAGCATT 59.514 47.619 0.00 0.00 0.00 3.56
3204 4007 2.025767 CTCATCTCCTCAGCCCCACG 62.026 65.000 0.00 0.00 0.00 4.94
3386 4211 0.324614 CCCATGTCCACAGCAGTGTA 59.675 55.000 8.55 0.00 44.39 2.90
3389 4214 0.700564 AATCCCATGTCCACAGCAGT 59.299 50.000 0.00 0.00 0.00 4.40
3443 4268 2.136298 TTCACCACCAGAGCAAACAA 57.864 45.000 0.00 0.00 0.00 2.83
3506 6058 4.111375 AGCAGGAACTACACATAACTCG 57.889 45.455 0.00 0.00 36.02 4.18
3510 6062 5.677319 AGCTAAGCAGGAACTACACATAA 57.323 39.130 0.00 0.00 36.02 1.90
3514 6066 5.008712 ACAAAAAGCTAAGCAGGAACTACAC 59.991 40.000 0.00 0.00 36.02 2.90
3529 6081 3.638160 TCAAGCCATCAGAACAAAAAGCT 59.362 39.130 0.00 0.00 0.00 3.74
3611 6166 7.625828 AAGACAAATATTTAGGAACGAAGGG 57.374 36.000 0.00 0.00 0.00 3.95
3612 6167 9.908152 AAAAAGACAAATATTTAGGAACGAAGG 57.092 29.630 0.00 0.00 0.00 3.46
3643 6198 9.640963 GTAGAGTATGTAGTCACTTGTTGAAAT 57.359 33.333 0.00 0.00 35.39 2.17
3644 6199 8.635328 TGTAGAGTATGTAGTCACTTGTTGAAA 58.365 33.333 0.00 0.00 35.39 2.69
3645 6200 8.173542 TGTAGAGTATGTAGTCACTTGTTGAA 57.826 34.615 0.00 0.00 35.39 2.69
3646 6201 7.754851 TGTAGAGTATGTAGTCACTTGTTGA 57.245 36.000 0.00 0.00 0.00 3.18
3647 6202 9.504710 GTATGTAGAGTATGTAGTCACTTGTTG 57.495 37.037 0.00 0.00 0.00 3.33
3648 6203 8.396390 CGTATGTAGAGTATGTAGTCACTTGTT 58.604 37.037 0.00 0.00 0.00 2.83
3649 6204 7.767659 TCGTATGTAGAGTATGTAGTCACTTGT 59.232 37.037 0.00 0.00 0.00 3.16
3650 6205 8.139521 TCGTATGTAGAGTATGTAGTCACTTG 57.860 38.462 0.00 0.00 0.00 3.16
3651 6206 8.728337 TTCGTATGTAGAGTATGTAGTCACTT 57.272 34.615 0.00 0.00 0.00 3.16
3652 6207 7.041916 GCTTCGTATGTAGAGTATGTAGTCACT 60.042 40.741 0.00 0.00 0.00 3.41
3653 6208 7.070798 GCTTCGTATGTAGAGTATGTAGTCAC 58.929 42.308 0.00 0.00 0.00 3.67
3654 6209 6.764560 TGCTTCGTATGTAGAGTATGTAGTCA 59.235 38.462 0.00 0.00 0.00 3.41
3655 6210 7.187244 TGCTTCGTATGTAGAGTATGTAGTC 57.813 40.000 0.00 0.00 0.00 2.59
3656 6211 7.563888 TTGCTTCGTATGTAGAGTATGTAGT 57.436 36.000 0.00 0.00 0.00 2.73
3657 6212 8.851960 TTTTGCTTCGTATGTAGAGTATGTAG 57.148 34.615 0.00 0.00 0.00 2.74
3658 6213 9.244799 CATTTTGCTTCGTATGTAGAGTATGTA 57.755 33.333 0.00 0.00 0.00 2.29
3659 6214 7.979537 TCATTTTGCTTCGTATGTAGAGTATGT 59.020 33.333 0.00 0.00 0.00 2.29
3660 6215 8.352752 TCATTTTGCTTCGTATGTAGAGTATG 57.647 34.615 0.00 0.00 0.00 2.39
3661 6216 8.198109 ACTCATTTTGCTTCGTATGTAGAGTAT 58.802 33.333 0.00 0.00 30.50 2.12
3662 6217 7.488150 CACTCATTTTGCTTCGTATGTAGAGTA 59.512 37.037 0.00 0.00 31.04 2.59
3663 6218 6.311445 CACTCATTTTGCTTCGTATGTAGAGT 59.689 38.462 0.00 0.00 32.23 3.24
3664 6219 6.531594 TCACTCATTTTGCTTCGTATGTAGAG 59.468 38.462 0.00 0.00 0.00 2.43
3665 6220 6.394809 TCACTCATTTTGCTTCGTATGTAGA 58.605 36.000 0.00 0.00 0.00 2.59
3666 6221 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
3667 6222 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
3668 6223 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
3669 6224 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
3670 6225 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3671 6226 6.034577 CGTAGATTCACTCATTTTGCTTCGTA 59.965 38.462 0.00 0.00 0.00 3.43
3672 6227 5.163953 CGTAGATTCACTCATTTTGCTTCGT 60.164 40.000 0.00 0.00 0.00 3.85
3673 6228 5.251081 CGTAGATTCACTCATTTTGCTTCG 58.749 41.667 0.00 0.00 0.00 3.79
3674 6229 5.024555 GCGTAGATTCACTCATTTTGCTTC 58.975 41.667 0.00 0.00 0.00 3.86
3675 6230 4.697352 AGCGTAGATTCACTCATTTTGCTT 59.303 37.500 0.00 0.00 0.00 3.91
3676 6231 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
3677 6232 4.606457 AGCGTAGATTCACTCATTTTGC 57.394 40.909 0.00 0.00 0.00 3.68
3678 6233 8.948853 TTTAAAGCGTAGATTCACTCATTTTG 57.051 30.769 0.00 0.00 31.23 2.44
3683 6238 8.335356 GCATATTTTAAAGCGTAGATTCACTCA 58.665 33.333 0.00 0.00 31.23 3.41
3684 6239 7.798982 GGCATATTTTAAAGCGTAGATTCACTC 59.201 37.037 0.00 0.00 31.23 3.51
3685 6240 7.499232 AGGCATATTTTAAAGCGTAGATTCACT 59.501 33.333 0.00 0.00 31.23 3.41
3686 6241 7.639945 AGGCATATTTTAAAGCGTAGATTCAC 58.360 34.615 0.00 0.00 31.23 3.18
3687 6242 7.801716 AGGCATATTTTAAAGCGTAGATTCA 57.198 32.000 0.00 0.00 31.23 2.57
3688 6243 8.770828 TGTAGGCATATTTTAAAGCGTAGATTC 58.229 33.333 1.25 0.00 31.23 2.52
3689 6244 8.671384 TGTAGGCATATTTTAAAGCGTAGATT 57.329 30.769 1.25 0.00 38.40 2.40
3690 6245 8.721478 CATGTAGGCATATTTTAAAGCGTAGAT 58.279 33.333 4.64 4.64 33.49 1.98
3691 6246 7.307751 GCATGTAGGCATATTTTAAAGCGTAGA 60.308 37.037 0.00 1.21 33.30 2.59
3692 6247 6.797033 GCATGTAGGCATATTTTAAAGCGTAG 59.203 38.462 0.00 0.00 33.30 3.51
3693 6248 6.261158 TGCATGTAGGCATATTTTAAAGCGTA 59.739 34.615 0.00 0.00 39.25 4.42
3694 6249 5.067153 TGCATGTAGGCATATTTTAAAGCGT 59.933 36.000 0.00 0.00 39.25 5.07
3695 6250 5.518812 TGCATGTAGGCATATTTTAAAGCG 58.481 37.500 0.00 0.00 39.25 4.68
3708 6263 5.702670 ACACAACATATAGATGCATGTAGGC 59.297 40.000 2.46 0.00 35.39 3.93
3709 6264 7.442062 TGAACACAACATATAGATGCATGTAGG 59.558 37.037 2.46 1.02 35.39 3.18
3710 6265 8.369218 TGAACACAACATATAGATGCATGTAG 57.631 34.615 2.46 0.00 35.39 2.74
3711 6266 8.907222 ATGAACACAACATATAGATGCATGTA 57.093 30.769 2.46 4.50 35.39 2.29
3712 6267 7.812690 ATGAACACAACATATAGATGCATGT 57.187 32.000 2.46 1.37 37.06 3.21
3713 6268 8.964150 CAAATGAACACAACATATAGATGCATG 58.036 33.333 2.46 0.00 36.43 4.06
3714 6269 8.905850 TCAAATGAACACAACATATAGATGCAT 58.094 29.630 0.00 0.00 36.43 3.96
3715 6270 8.278729 TCAAATGAACACAACATATAGATGCA 57.721 30.769 0.00 0.00 36.43 3.96
3716 6271 9.571810 TTTCAAATGAACACAACATATAGATGC 57.428 29.630 0.00 0.00 33.27 3.91
3724 6279 8.849168 TCTAGACATTTCAAATGAACACAACAT 58.151 29.630 17.30 0.00 33.13 2.71
3725 6280 8.219546 TCTAGACATTTCAAATGAACACAACA 57.780 30.769 17.30 0.00 33.13 3.33
3726 6281 9.515020 TTTCTAGACATTTCAAATGAACACAAC 57.485 29.630 17.30 0.12 33.13 3.32
3727 6282 9.734620 CTTTCTAGACATTTCAAATGAACACAA 57.265 29.630 17.30 1.47 33.13 3.33
3728 6283 9.119418 TCTTTCTAGACATTTCAAATGAACACA 57.881 29.630 17.30 2.76 33.13 3.72
3745 6300 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
3746 6301 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
3747 6302 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
3748 6303 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
3749 6304 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
3750 6305 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
3751 6306 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
3752 6307 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
3753 6308 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
3754 6309 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
3755 6310 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
3756 6311 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
3757 6312 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
3758 6313 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3759 6314 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3760 6315 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
3761 6316 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3762 6317 1.961133 AATACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3763 6318 2.852714 TAATACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3764 6319 3.198417 TGTTTAATACTCCCTCCGTTCCC 59.802 47.826 0.00 0.00 0.00 3.97
3765 6320 4.476628 TGTTTAATACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
3766 6321 5.350640 CAGTTGTTTAATACTCCCTCCGTTC 59.649 44.000 0.00 0.00 0.00 3.95
3767 6322 5.243207 CAGTTGTTTAATACTCCCTCCGTT 58.757 41.667 0.00 0.00 0.00 4.44
3768 6323 4.323257 CCAGTTGTTTAATACTCCCTCCGT 60.323 45.833 0.00 0.00 0.00 4.69
3769 6324 4.081309 TCCAGTTGTTTAATACTCCCTCCG 60.081 45.833 0.00 0.00 0.00 4.63
3770 6325 5.183969 GTCCAGTTGTTTAATACTCCCTCC 58.816 45.833 0.00 0.00 0.00 4.30
3771 6326 4.868734 CGTCCAGTTGTTTAATACTCCCTC 59.131 45.833 0.00 0.00 0.00 4.30
3772 6327 4.828829 CGTCCAGTTGTTTAATACTCCCT 58.171 43.478 0.00 0.00 0.00 4.20
3773 6328 3.373130 GCGTCCAGTTGTTTAATACTCCC 59.627 47.826 0.00 0.00 0.00 4.30
3774 6329 3.373130 GGCGTCCAGTTGTTTAATACTCC 59.627 47.826 0.00 0.00 0.00 3.85
3775 6330 3.373130 GGGCGTCCAGTTGTTTAATACTC 59.627 47.826 0.00 0.00 0.00 2.59
3776 6331 3.244630 TGGGCGTCCAGTTGTTTAATACT 60.245 43.478 3.51 0.00 38.32 2.12
3777 6332 3.075884 TGGGCGTCCAGTTGTTTAATAC 58.924 45.455 3.51 0.00 38.32 1.89
3778 6333 3.420300 TGGGCGTCCAGTTGTTTAATA 57.580 42.857 3.51 0.00 38.32 0.98
3779 6334 2.279935 TGGGCGTCCAGTTGTTTAAT 57.720 45.000 3.51 0.00 38.32 1.40
3780 6335 3.802862 TGGGCGTCCAGTTGTTTAA 57.197 47.368 3.51 0.00 38.32 1.52
3985 6559 7.512130 ACTTGGCATCACAATCTCTATGAATA 58.488 34.615 0.00 0.00 0.00 1.75
4000 6574 3.070476 TGCAGATGTTACTTGGCATCA 57.930 42.857 7.19 0.00 42.72 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.