Multiple sequence alignment - TraesCS6A01G185700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G185700 chr6A 100.000 3281 0 0 1 3281 218128947 218125667 0.000000e+00 6059.0
1 TraesCS6A01G185700 chr6B 91.220 1902 82 25 382 2223 289935922 289934046 0.000000e+00 2508.0
2 TraesCS6A01G185700 chr6B 92.147 191 15 0 182 372 289936492 289936302 1.500000e-68 270.0
3 TraesCS6A01G185700 chr6D 90.772 1658 73 26 647 2236 159597330 159595685 0.000000e+00 2141.0
4 TraesCS6A01G185700 chr6D 92.670 191 14 0 182 372 159601777 159601587 3.220000e-70 276.0
5 TraesCS6A01G185700 chr6D 90.909 176 15 1 407 582 159598719 159598545 5.470000e-58 235.0
6 TraesCS6A01G185700 chr6D 97.143 35 1 0 386 420 159598768 159598734 3.540000e-05 60.2
7 TraesCS6A01G185700 chr3A 95.059 850 37 1 2432 3281 617547720 617548564 0.000000e+00 1332.0
8 TraesCS6A01G185700 chr3A 94.947 851 35 3 2431 3281 617542255 617543097 0.000000e+00 1327.0
9 TraesCS6A01G185700 chr3A 93.294 850 52 5 2432 3281 743228029 743228873 0.000000e+00 1249.0
10 TraesCS6A01G185700 chr3A 92.958 852 59 1 2431 3281 744743231 744744082 0.000000e+00 1240.0
11 TraesCS6A01G185700 chr3A 96.316 190 4 2 1 190 729749579 729749393 3.180000e-80 309.0
12 TraesCS6A01G185700 chr3A 96.175 183 5 1 1 183 9538275 9538095 6.880000e-77 298.0
13 TraesCS6A01G185700 chr3A 97.222 72 2 0 114 185 741780290 741780219 4.450000e-24 122.0
14 TraesCS6A01G185700 chr5A 94.595 851 45 1 2432 3281 616604969 616604119 0.000000e+00 1315.0
15 TraesCS6A01G185700 chr5A 94.471 850 42 4 2432 3281 402133830 402132986 0.000000e+00 1304.0
16 TraesCS6A01G185700 chr5A 82.759 116 13 2 2114 2223 595492276 595492162 2.690000e-16 97.1
17 TraesCS6A01G185700 chr4A 93.765 850 47 3 2432 3281 552205895 552206738 0.000000e+00 1271.0
18 TraesCS6A01G185700 chr4A 95.135 185 7 1 1 185 606757092 606756910 1.150000e-74 291.0
19 TraesCS6A01G185700 chr7A 93.140 860 49 1 2432 3281 694727588 694728447 0.000000e+00 1253.0
20 TraesCS6A01G185700 chr7A 92.999 857 55 5 2422 3278 92426307 92427158 0.000000e+00 1245.0
21 TraesCS6A01G185700 chr7A 95.628 183 6 1 1 183 149415903 149416083 3.200000e-75 292.0
22 TraesCS6A01G185700 chr2A 96.133 181 5 1 1 181 35851296 35851118 8.900000e-76 294.0
23 TraesCS6A01G185700 chr2A 80.000 125 16 5 2106 2223 136852850 136852972 2.100000e-12 84.2
24 TraesCS6A01G185700 chr1A 95.480 177 4 2 7 183 125106408 125106236 2.490000e-71 279.0
25 TraesCS6A01G185700 chr3D 89.894 188 12 3 1 188 210727291 210727471 5.470000e-58 235.0
26 TraesCS6A01G185700 chr7D 81.046 153 20 7 386 535 178614921 178615067 2.680000e-21 113.0
27 TraesCS6A01G185700 chr7D 81.915 94 16 1 92 185 569942797 569942705 9.760000e-11 78.7
28 TraesCS6A01G185700 chr5B 83.465 127 14 2 2103 2223 58624680 58624555 9.620000e-21 111.0
29 TraesCS6A01G185700 chr3B 89.655 87 8 1 2104 2190 159447928 159447843 3.460000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G185700 chr6A 218125667 218128947 3280 True 6059.00 6059 100.0000 1 3281 1 chr6A.!!$R1 3280
1 TraesCS6A01G185700 chr6B 289934046 289936492 2446 True 1389.00 2508 91.6835 182 2223 2 chr6B.!!$R1 2041
2 TraesCS6A01G185700 chr6D 159595685 159601777 6092 True 678.05 2141 92.8735 182 2236 4 chr6D.!!$R1 2054
3 TraesCS6A01G185700 chr3A 617547720 617548564 844 False 1332.00 1332 95.0590 2432 3281 1 chr3A.!!$F2 849
4 TraesCS6A01G185700 chr3A 617542255 617543097 842 False 1327.00 1327 94.9470 2431 3281 1 chr3A.!!$F1 850
5 TraesCS6A01G185700 chr3A 743228029 743228873 844 False 1249.00 1249 93.2940 2432 3281 1 chr3A.!!$F3 849
6 TraesCS6A01G185700 chr3A 744743231 744744082 851 False 1240.00 1240 92.9580 2431 3281 1 chr3A.!!$F4 850
7 TraesCS6A01G185700 chr5A 616604119 616604969 850 True 1315.00 1315 94.5950 2432 3281 1 chr5A.!!$R3 849
8 TraesCS6A01G185700 chr5A 402132986 402133830 844 True 1304.00 1304 94.4710 2432 3281 1 chr5A.!!$R1 849
9 TraesCS6A01G185700 chr4A 552205895 552206738 843 False 1271.00 1271 93.7650 2432 3281 1 chr4A.!!$F1 849
10 TraesCS6A01G185700 chr7A 694727588 694728447 859 False 1253.00 1253 93.1400 2432 3281 1 chr7A.!!$F3 849
11 TraesCS6A01G185700 chr7A 92426307 92427158 851 False 1245.00 1245 92.9990 2422 3278 1 chr7A.!!$F1 856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 4991 0.036577 GCTCCAGCACTCACATGACT 60.037 55.0 0.0 0.0 41.59 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 6462 0.034198 TCTTGTTCATTGTCGCCGGA 59.966 50.0 5.05 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.995991 CGTTTATCACTCACGCCGG 59.004 57.895 0.00 0.00 0.00 6.13
22 23 1.713830 GTTTATCACTCACGCCGGC 59.286 57.895 19.07 19.07 0.00 6.13
23 24 0.739813 GTTTATCACTCACGCCGGCT 60.740 55.000 26.68 8.92 0.00 5.52
24 25 0.739462 TTTATCACTCACGCCGGCTG 60.739 55.000 26.68 20.95 0.00 4.85
25 26 3.716539 TATCACTCACGCCGGCTGC 62.717 63.158 26.68 0.00 0.00 5.25
42 43 3.725485 GCATGCTTGCTGTATTGCA 57.275 47.368 16.80 0.00 45.77 4.08
43 44 2.218953 GCATGCTTGCTGTATTGCAT 57.781 45.000 16.80 0.00 45.77 3.96
44 45 2.124903 GCATGCTTGCTGTATTGCATC 58.875 47.619 16.80 0.00 45.77 3.91
45 46 2.381589 CATGCTTGCTGTATTGCATCG 58.618 47.619 0.00 0.00 43.24 3.84
46 47 1.736612 TGCTTGCTGTATTGCATCGA 58.263 45.000 0.00 0.00 42.96 3.59
47 48 2.083002 TGCTTGCTGTATTGCATCGAA 58.917 42.857 0.00 0.00 42.96 3.71
48 49 2.096335 TGCTTGCTGTATTGCATCGAAG 59.904 45.455 0.00 0.00 42.96 3.79
49 50 2.352651 GCTTGCTGTATTGCATCGAAGA 59.647 45.455 0.00 0.00 42.96 2.87
50 51 3.003068 GCTTGCTGTATTGCATCGAAGAT 59.997 43.478 0.00 0.00 45.12 2.40
51 52 4.497006 GCTTGCTGTATTGCATCGAAGATT 60.497 41.667 0.00 0.00 45.12 2.40
52 53 4.541085 TGCTGTATTGCATCGAAGATTG 57.459 40.909 0.00 0.00 45.12 2.67
53 54 4.190772 TGCTGTATTGCATCGAAGATTGA 58.809 39.130 0.00 0.00 45.12 2.57
54 55 4.271776 TGCTGTATTGCATCGAAGATTGAG 59.728 41.667 0.00 0.00 45.12 3.02
55 56 4.770287 CTGTATTGCATCGAAGATTGAGC 58.230 43.478 0.00 0.00 45.12 4.26
56 57 4.445453 TGTATTGCATCGAAGATTGAGCT 58.555 39.130 0.00 0.00 45.12 4.09
57 58 3.965292 ATTGCATCGAAGATTGAGCTG 57.035 42.857 0.00 0.00 45.12 4.24
58 59 2.391616 TGCATCGAAGATTGAGCTGT 57.608 45.000 0.00 0.00 45.12 4.40
59 60 3.525268 TGCATCGAAGATTGAGCTGTA 57.475 42.857 0.00 0.00 45.12 2.74
60 61 3.451526 TGCATCGAAGATTGAGCTGTAG 58.548 45.455 0.00 0.00 45.12 2.74
61 62 2.220593 GCATCGAAGATTGAGCTGTAGC 59.779 50.000 0.00 0.00 45.12 3.58
62 63 2.586258 TCGAAGATTGAGCTGTAGCC 57.414 50.000 0.00 0.00 43.38 3.93
63 64 1.202302 TCGAAGATTGAGCTGTAGCCG 60.202 52.381 0.00 0.00 43.38 5.52
64 65 1.576356 GAAGATTGAGCTGTAGCCGG 58.424 55.000 0.00 0.00 43.38 6.13
65 66 0.179000 AAGATTGAGCTGTAGCCGGG 59.821 55.000 2.18 0.00 43.38 5.73
66 67 1.889573 GATTGAGCTGTAGCCGGGC 60.890 63.158 12.11 12.11 43.38 6.13
67 68 3.740128 ATTGAGCTGTAGCCGGGCG 62.740 63.158 14.39 0.00 43.38 6.13
69 70 3.917760 GAGCTGTAGCCGGGCGAT 61.918 66.667 14.39 0.00 43.38 4.58
70 71 2.520982 AGCTGTAGCCGGGCGATA 60.521 61.111 14.39 5.82 43.38 2.92
71 72 2.355956 GCTGTAGCCGGGCGATAC 60.356 66.667 14.39 12.17 34.31 2.24
72 73 3.125607 CTGTAGCCGGGCGATACA 58.874 61.111 14.39 16.10 0.00 2.29
73 74 1.299926 CTGTAGCCGGGCGATACAC 60.300 63.158 14.39 8.39 0.00 2.90
74 75 2.354305 GTAGCCGGGCGATACACG 60.354 66.667 14.39 0.00 45.66 4.49
94 95 3.832492 GCGCCGGCTCTTCTCTCT 61.832 66.667 26.68 0.00 35.83 3.10
95 96 2.411290 CGCCGGCTCTTCTCTCTC 59.589 66.667 26.68 0.00 0.00 3.20
96 97 2.118404 CGCCGGCTCTTCTCTCTCT 61.118 63.158 26.68 0.00 0.00 3.10
97 98 1.733526 GCCGGCTCTTCTCTCTCTC 59.266 63.158 22.15 0.00 0.00 3.20
98 99 0.751643 GCCGGCTCTTCTCTCTCTCT 60.752 60.000 22.15 0.00 0.00 3.10
99 100 1.308998 CCGGCTCTTCTCTCTCTCTC 58.691 60.000 0.00 0.00 0.00 3.20
100 101 1.134098 CCGGCTCTTCTCTCTCTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
101 102 2.643551 CGGCTCTTCTCTCTCTCTCTT 58.356 52.381 0.00 0.00 0.00 2.85
102 103 3.016736 CGGCTCTTCTCTCTCTCTCTTT 58.983 50.000 0.00 0.00 0.00 2.52
103 104 3.181497 CGGCTCTTCTCTCTCTCTCTTTG 60.181 52.174 0.00 0.00 0.00 2.77
104 105 3.763897 GGCTCTTCTCTCTCTCTCTTTGT 59.236 47.826 0.00 0.00 0.00 2.83
105 106 4.220602 GGCTCTTCTCTCTCTCTCTTTGTT 59.779 45.833 0.00 0.00 0.00 2.83
106 107 5.279456 GGCTCTTCTCTCTCTCTCTTTGTTT 60.279 44.000 0.00 0.00 0.00 2.83
107 108 5.863935 GCTCTTCTCTCTCTCTCTTTGTTTC 59.136 44.000 0.00 0.00 0.00 2.78
108 109 6.294731 GCTCTTCTCTCTCTCTCTTTGTTTCT 60.295 42.308 0.00 0.00 0.00 2.52
109 110 7.214467 TCTTCTCTCTCTCTCTTTGTTTCTC 57.786 40.000 0.00 0.00 0.00 2.87
110 111 6.775142 TCTTCTCTCTCTCTCTTTGTTTCTCA 59.225 38.462 0.00 0.00 0.00 3.27
111 112 6.325919 TCTCTCTCTCTCTTTGTTTCTCAC 57.674 41.667 0.00 0.00 0.00 3.51
112 113 6.068010 TCTCTCTCTCTCTTTGTTTCTCACT 58.932 40.000 0.00 0.00 0.00 3.41
113 114 6.206634 TCTCTCTCTCTCTTTGTTTCTCACTC 59.793 42.308 0.00 0.00 0.00 3.51
114 115 5.242838 TCTCTCTCTCTTTGTTTCTCACTCC 59.757 44.000 0.00 0.00 0.00 3.85
115 116 5.144100 TCTCTCTCTTTGTTTCTCACTCCT 58.856 41.667 0.00 0.00 0.00 3.69
116 117 5.242838 TCTCTCTCTTTGTTTCTCACTCCTC 59.757 44.000 0.00 0.00 0.00 3.71
117 118 4.282195 TCTCTCTTTGTTTCTCACTCCTCC 59.718 45.833 0.00 0.00 0.00 4.30
118 119 3.967326 TCTCTTTGTTTCTCACTCCTCCA 59.033 43.478 0.00 0.00 0.00 3.86
119 120 4.039730 TCTCTTTGTTTCTCACTCCTCCAG 59.960 45.833 0.00 0.00 0.00 3.86
120 121 2.550830 TTGTTTCTCACTCCTCCAGC 57.449 50.000 0.00 0.00 0.00 4.85
121 122 1.423584 TGTTTCTCACTCCTCCAGCA 58.576 50.000 0.00 0.00 0.00 4.41
122 123 1.768275 TGTTTCTCACTCCTCCAGCAA 59.232 47.619 0.00 0.00 0.00 3.91
123 124 2.224378 TGTTTCTCACTCCTCCAGCAAG 60.224 50.000 0.00 0.00 0.00 4.01
124 125 0.979665 TTCTCACTCCTCCAGCAAGG 59.020 55.000 0.00 0.00 37.81 3.61
125 126 0.115152 TCTCACTCCTCCAGCAAGGA 59.885 55.000 2.92 2.92 46.75 3.36
144 145 7.712264 CAAGGATTTTTGCTGACATGTAAAA 57.288 32.000 0.00 1.81 31.60 1.52
145 146 7.566709 CAAGGATTTTTGCTGACATGTAAAAC 58.433 34.615 0.00 0.00 32.82 2.43
146 147 6.223120 AGGATTTTTGCTGACATGTAAAACC 58.777 36.000 0.00 3.03 32.82 3.27
147 148 6.041979 AGGATTTTTGCTGACATGTAAAACCT 59.958 34.615 10.81 10.81 32.82 3.50
148 149 6.705825 GGATTTTTGCTGACATGTAAAACCTT 59.294 34.615 0.00 0.00 32.82 3.50
149 150 7.870445 GGATTTTTGCTGACATGTAAAACCTTA 59.130 33.333 0.00 0.00 32.82 2.69
150 151 9.423061 GATTTTTGCTGACATGTAAAACCTTAT 57.577 29.630 0.00 0.00 32.82 1.73
152 153 9.906660 TTTTTGCTGACATGTAAAACCTTATAG 57.093 29.630 0.00 0.00 32.82 1.31
153 154 6.677781 TGCTGACATGTAAAACCTTATAGC 57.322 37.500 0.00 0.00 0.00 2.97
154 155 5.588648 TGCTGACATGTAAAACCTTATAGCC 59.411 40.000 0.00 0.00 0.00 3.93
155 156 5.588648 GCTGACATGTAAAACCTTATAGCCA 59.411 40.000 0.00 0.00 0.00 4.75
156 157 6.238484 GCTGACATGTAAAACCTTATAGCCAG 60.238 42.308 0.00 0.00 0.00 4.85
157 158 5.588648 TGACATGTAAAACCTTATAGCCAGC 59.411 40.000 0.00 0.00 0.00 4.85
158 159 5.755849 ACATGTAAAACCTTATAGCCAGCT 58.244 37.500 0.00 0.00 0.00 4.24
159 160 5.590259 ACATGTAAAACCTTATAGCCAGCTG 59.410 40.000 6.78 6.78 0.00 4.24
160 161 5.429681 TGTAAAACCTTATAGCCAGCTGA 57.570 39.130 17.39 0.00 0.00 4.26
161 162 5.183228 TGTAAAACCTTATAGCCAGCTGAC 58.817 41.667 17.39 2.52 0.00 3.51
162 163 4.576330 AAAACCTTATAGCCAGCTGACT 57.424 40.909 17.39 12.46 0.00 3.41
163 164 5.693769 AAAACCTTATAGCCAGCTGACTA 57.306 39.130 17.39 14.71 0.00 2.59
164 165 4.946478 AACCTTATAGCCAGCTGACTAG 57.054 45.455 17.39 3.01 0.00 2.57
165 166 3.235200 ACCTTATAGCCAGCTGACTAGG 58.765 50.000 17.39 15.33 0.00 3.02
171 172 2.629336 GCCAGCTGACTAGGCTTATT 57.371 50.000 17.39 0.00 44.92 1.40
172 173 3.753294 GCCAGCTGACTAGGCTTATTA 57.247 47.619 17.39 0.00 44.92 0.98
173 174 4.278975 GCCAGCTGACTAGGCTTATTAT 57.721 45.455 17.39 0.00 44.92 1.28
174 175 5.407407 GCCAGCTGACTAGGCTTATTATA 57.593 43.478 17.39 0.00 44.92 0.98
175 176 5.172205 GCCAGCTGACTAGGCTTATTATAC 58.828 45.833 17.39 0.00 44.92 1.47
176 177 5.046950 GCCAGCTGACTAGGCTTATTATACT 60.047 44.000 17.39 0.00 44.92 2.12
177 178 6.519213 GCCAGCTGACTAGGCTTATTATACTT 60.519 42.308 17.39 0.00 44.92 2.24
178 179 6.870965 CCAGCTGACTAGGCTTATTATACTTG 59.129 42.308 17.39 0.00 38.03 3.16
179 180 6.367422 CAGCTGACTAGGCTTATTATACTTGC 59.633 42.308 8.42 0.00 38.03 4.01
180 181 6.268847 AGCTGACTAGGCTTATTATACTTGCT 59.731 38.462 0.00 0.00 36.56 3.91
186 187 9.984190 ACTAGGCTTATTATACTTGCTCTTAAC 57.016 33.333 0.00 0.00 0.00 2.01
189 190 9.155785 AGGCTTATTATACTTGCTCTTAACCTA 57.844 33.333 0.00 0.00 0.00 3.08
341 342 5.124645 AGTAGTTCGAGTGGAATAGATCGT 58.875 41.667 0.00 0.00 36.92 3.73
362 363 2.654749 TGAGTGAGTGCCTAACATCG 57.345 50.000 0.00 0.00 0.00 3.84
363 364 1.893137 TGAGTGAGTGCCTAACATCGT 59.107 47.619 0.00 0.00 0.00 3.73
372 373 1.933853 GCCTAACATCGTAGCTGGTTG 59.066 52.381 0.00 0.00 0.00 3.77
373 374 2.550978 CCTAACATCGTAGCTGGTTGG 58.449 52.381 0.00 0.00 0.00 3.77
374 375 2.093658 CCTAACATCGTAGCTGGTTGGT 60.094 50.000 0.00 0.00 0.00 3.67
375 376 2.094762 AACATCGTAGCTGGTTGGTC 57.905 50.000 0.00 0.00 0.00 4.02
376 377 1.267121 ACATCGTAGCTGGTTGGTCT 58.733 50.000 0.00 0.00 0.00 3.85
378 379 2.829720 ACATCGTAGCTGGTTGGTCTTA 59.170 45.455 0.00 0.00 0.00 2.10
743 4728 1.585006 CAGACTACCAACGTCGGCT 59.415 57.895 0.00 0.00 36.53 5.52
841 4845 1.006571 TCTCAAACGGCTCGACACC 60.007 57.895 1.50 0.00 0.00 4.16
953 4958 2.233566 ATTCTGTGGGCCAGCTCCA 61.234 57.895 6.40 0.00 41.25 3.86
976 4990 2.464682 GCTCCAGCACTCACATGAC 58.535 57.895 0.00 0.00 41.59 3.06
977 4991 0.036577 GCTCCAGCACTCACATGACT 60.037 55.000 0.00 0.00 41.59 3.41
1000 5014 0.608130 CTATGTATAGCGCTGGCCCA 59.392 55.000 22.90 11.70 41.24 5.36
1019 5033 2.662866 CATGTGCTCTCCCATTTGGAT 58.337 47.619 0.00 0.00 44.07 3.41
1029 5043 5.989477 TCTCCCATTTGGATACTAGTGTTG 58.011 41.667 5.39 0.00 44.07 3.33
1212 5237 2.501602 GGCCACCAACAAGCAAGCT 61.502 57.895 0.00 0.00 0.00 3.74
1213 5238 1.178534 GGCCACCAACAAGCAAGCTA 61.179 55.000 0.00 0.00 0.00 3.32
1227 5252 2.418197 GCAAGCTAATGACACCTACGGA 60.418 50.000 0.00 0.00 0.00 4.69
1341 5369 9.710900 CAATTTCCTTGTTTAATTTCCTAAGCT 57.289 29.630 0.00 0.00 0.00 3.74
1374 5402 7.519002 ACTTCGAATGTGCTCTAAATAAACAC 58.481 34.615 0.00 0.00 0.00 3.32
1376 5404 4.723862 CGAATGTGCTCTAAATAAACACGC 59.276 41.667 0.00 0.00 33.96 5.34
1393 5421 2.928361 CGTGTCAAGTCGCACCAC 59.072 61.111 0.00 0.00 32.40 4.16
1407 5435 2.205152 ACCACGACCAGTTACCGCT 61.205 57.895 0.00 0.00 0.00 5.52
1540 5568 0.752009 TCAAGTCCCTCGCTCGCTAT 60.752 55.000 0.00 0.00 0.00 2.97
1604 5632 4.184649 TCTCCTTTCTCTTTTGCCCTTT 57.815 40.909 0.00 0.00 0.00 3.11
1605 5633 4.546674 TCTCCTTTCTCTTTTGCCCTTTT 58.453 39.130 0.00 0.00 0.00 2.27
1608 5636 6.265422 TCTCCTTTCTCTTTTGCCCTTTTTAG 59.735 38.462 0.00 0.00 0.00 1.85
1623 5651 6.601217 GCCCTTTTTAGATTCATCTTCACTCT 59.399 38.462 0.00 0.00 38.32 3.24
1628 5656 1.596727 GATTCATCTTCACTCTGCGCC 59.403 52.381 4.18 0.00 0.00 6.53
1754 5782 1.961180 GAGCTGGTGTACCTGGCGAT 61.961 60.000 9.55 0.00 39.23 4.58
1980 6024 4.222588 CAGGAAGGTAGAGGATGATCCATC 59.777 50.000 14.90 8.37 39.61 3.51
2009 6053 4.630644 ATCGCTGATATTTGGACCATCT 57.369 40.909 0.00 0.00 0.00 2.90
2028 6076 6.493115 ACCATCTTTTATGTGTCAATGGTTGA 59.507 34.615 0.00 0.00 41.93 3.18
2126 6188 3.414549 TGTTCGAAAAGTTGAGGTTGC 57.585 42.857 0.00 0.00 0.00 4.17
2157 6219 4.093514 CACTTGATTGATCACGTGCAATC 58.906 43.478 27.97 27.97 45.67 2.67
2204 6274 3.679980 CACGACTTGTCTCCCAAACTATG 59.320 47.826 0.00 0.00 31.20 2.23
2214 6284 4.891168 TCTCCCAAACTATGCACTATACGA 59.109 41.667 0.00 0.00 0.00 3.43
2237 6307 8.669243 ACGAAGAAGAAAAATACATGAATCTCC 58.331 33.333 0.00 0.00 0.00 3.71
2238 6308 8.125448 CGAAGAAGAAAAATACATGAATCTCCC 58.875 37.037 0.00 0.00 0.00 4.30
2239 6309 9.183368 GAAGAAGAAAAATACATGAATCTCCCT 57.817 33.333 0.00 0.00 0.00 4.20
2240 6310 9.539194 AAGAAGAAAAATACATGAATCTCCCTT 57.461 29.630 0.00 0.00 0.00 3.95
2241 6311 9.183368 AGAAGAAAAATACATGAATCTCCCTTC 57.817 33.333 0.00 5.02 0.00 3.46
2242 6312 7.888250 AGAAAAATACATGAATCTCCCTTCC 57.112 36.000 0.00 0.00 0.00 3.46
2243 6313 6.836007 AGAAAAATACATGAATCTCCCTTCCC 59.164 38.462 0.00 0.00 0.00 3.97
2244 6314 4.731313 AATACATGAATCTCCCTTCCCC 57.269 45.455 0.00 0.00 0.00 4.81
2245 6315 0.839946 ACATGAATCTCCCTTCCCCG 59.160 55.000 0.00 0.00 0.00 5.73
2246 6316 0.109342 CATGAATCTCCCTTCCCCGG 59.891 60.000 0.00 0.00 0.00 5.73
2247 6317 1.709994 ATGAATCTCCCTTCCCCGGC 61.710 60.000 0.00 0.00 0.00 6.13
2248 6318 2.286121 AATCTCCCTTCCCCGGCA 60.286 61.111 0.00 0.00 0.00 5.69
2249 6319 2.330924 GAATCTCCCTTCCCCGGCAG 62.331 65.000 0.00 0.00 0.00 4.85
2250 6320 3.642741 ATCTCCCTTCCCCGGCAGT 62.643 63.158 0.00 0.00 0.00 4.40
2251 6321 4.101448 CTCCCTTCCCCGGCAGTG 62.101 72.222 0.00 0.00 0.00 3.66
2252 6322 4.649705 TCCCTTCCCCGGCAGTGA 62.650 66.667 0.00 0.00 0.00 3.41
2253 6323 3.646715 CCCTTCCCCGGCAGTGAA 61.647 66.667 0.00 0.00 0.00 3.18
2254 6324 2.434331 CCTTCCCCGGCAGTGAAA 59.566 61.111 0.00 0.00 0.00 2.69
2255 6325 1.228429 CCTTCCCCGGCAGTGAAAA 60.228 57.895 0.00 0.00 0.00 2.29
2256 6326 1.524008 CCTTCCCCGGCAGTGAAAAC 61.524 60.000 0.00 0.00 0.00 2.43
2257 6327 1.852067 CTTCCCCGGCAGTGAAAACG 61.852 60.000 0.00 0.00 0.00 3.60
2258 6328 2.593436 CCCCGGCAGTGAAAACGT 60.593 61.111 0.00 0.00 0.00 3.99
2259 6329 2.613506 CCCCGGCAGTGAAAACGTC 61.614 63.158 0.00 0.00 0.00 4.34
2260 6330 1.890041 CCCGGCAGTGAAAACGTCA 60.890 57.895 0.00 0.00 0.00 4.35
2267 6337 2.592287 TGAAAACGTCACCGGGCC 60.592 61.111 6.32 0.00 38.78 5.80
2268 6338 2.592287 GAAAACGTCACCGGGCCA 60.592 61.111 6.32 0.00 38.78 5.36
2269 6339 2.900167 GAAAACGTCACCGGGCCAC 61.900 63.158 6.32 0.00 38.78 5.01
2270 6340 3.700831 AAAACGTCACCGGGCCACA 62.701 57.895 6.32 0.00 38.78 4.17
2271 6341 4.922026 AACGTCACCGGGCCACAC 62.922 66.667 6.32 0.00 38.78 3.82
2274 6344 3.936203 GTCACCGGGCCACACAGA 61.936 66.667 6.32 0.00 0.00 3.41
2275 6345 3.625897 TCACCGGGCCACACAGAG 61.626 66.667 6.32 0.00 0.00 3.35
2276 6346 3.625897 CACCGGGCCACACAGAGA 61.626 66.667 6.32 0.00 0.00 3.10
2277 6347 3.626924 ACCGGGCCACACAGAGAC 61.627 66.667 6.32 0.00 0.00 3.36
2278 6348 3.314331 CCGGGCCACACAGAGACT 61.314 66.667 4.39 0.00 0.00 3.24
2279 6349 2.047844 CGGGCCACACAGAGACTG 60.048 66.667 4.39 0.00 37.52 3.51
2280 6350 2.574018 CGGGCCACACAGAGACTGA 61.574 63.158 4.39 0.00 35.18 3.41
2281 6351 1.754745 GGGCCACACAGAGACTGAA 59.245 57.895 4.39 0.00 35.18 3.02
2282 6352 0.603975 GGGCCACACAGAGACTGAAC 60.604 60.000 4.39 0.00 35.18 3.18
2283 6353 0.603975 GGCCACACAGAGACTGAACC 60.604 60.000 0.00 0.00 35.18 3.62
2284 6354 0.946221 GCCACACAGAGACTGAACCG 60.946 60.000 5.76 0.00 35.18 4.44
2285 6355 0.673985 CCACACAGAGACTGAACCGA 59.326 55.000 5.76 0.00 35.18 4.69
2286 6356 1.068588 CCACACAGAGACTGAACCGAA 59.931 52.381 5.76 0.00 35.18 4.30
2287 6357 2.483013 CCACACAGAGACTGAACCGAAA 60.483 50.000 5.76 0.00 35.18 3.46
2288 6358 2.540101 CACACAGAGACTGAACCGAAAC 59.460 50.000 5.76 0.00 35.18 2.78
2289 6359 2.431057 ACACAGAGACTGAACCGAAACT 59.569 45.455 5.76 0.00 35.18 2.66
2290 6360 3.053455 CACAGAGACTGAACCGAAACTC 58.947 50.000 5.76 0.00 35.18 3.01
2291 6361 2.693591 ACAGAGACTGAACCGAAACTCA 59.306 45.455 5.76 0.00 35.18 3.41
2292 6362 3.322254 ACAGAGACTGAACCGAAACTCAT 59.678 43.478 5.76 0.00 35.18 2.90
2293 6363 3.923461 CAGAGACTGAACCGAAACTCATC 59.077 47.826 0.00 0.00 32.44 2.92
2294 6364 2.917971 GAGACTGAACCGAAACTCATCG 59.082 50.000 0.00 0.00 42.37 3.84
2295 6365 2.557056 AGACTGAACCGAAACTCATCGA 59.443 45.455 0.00 0.00 45.48 3.59
2296 6366 3.005472 AGACTGAACCGAAACTCATCGAA 59.995 43.478 0.00 0.00 45.48 3.71
2297 6367 3.318017 ACTGAACCGAAACTCATCGAAG 58.682 45.455 0.00 0.00 45.48 3.79
2298 6368 2.668457 CTGAACCGAAACTCATCGAAGG 59.332 50.000 0.00 0.00 45.48 3.46
2299 6369 2.036733 TGAACCGAAACTCATCGAAGGT 59.963 45.455 0.00 0.00 45.48 3.50
2300 6370 2.080286 ACCGAAACTCATCGAAGGTG 57.920 50.000 0.00 0.00 45.48 4.00
2301 6371 1.337823 ACCGAAACTCATCGAAGGTGG 60.338 52.381 0.00 0.00 45.48 4.61
2302 6372 1.067142 CCGAAACTCATCGAAGGTGGA 60.067 52.381 0.00 0.00 45.48 4.02
2303 6373 1.993370 CGAAACTCATCGAAGGTGGAC 59.007 52.381 0.00 0.00 45.48 4.02
2304 6374 2.352814 CGAAACTCATCGAAGGTGGACT 60.353 50.000 0.00 0.00 45.48 3.85
2305 6375 3.119602 CGAAACTCATCGAAGGTGGACTA 60.120 47.826 0.00 0.00 45.48 2.59
2306 6376 4.440250 CGAAACTCATCGAAGGTGGACTAT 60.440 45.833 0.00 0.00 45.48 2.12
2307 6377 5.420409 GAAACTCATCGAAGGTGGACTATT 58.580 41.667 0.00 0.00 0.00 1.73
2308 6378 4.392921 ACTCATCGAAGGTGGACTATTG 57.607 45.455 0.00 0.00 0.00 1.90
2309 6379 4.023980 ACTCATCGAAGGTGGACTATTGA 58.976 43.478 0.00 0.00 0.00 2.57
2310 6380 4.098654 ACTCATCGAAGGTGGACTATTGAG 59.901 45.833 0.00 0.00 35.40 3.02
2311 6381 2.961526 TCGAAGGTGGACTATTGAGC 57.038 50.000 0.00 0.00 0.00 4.26
2312 6382 1.134367 TCGAAGGTGGACTATTGAGCG 59.866 52.381 0.00 0.00 0.00 5.03
2313 6383 1.802880 CGAAGGTGGACTATTGAGCGG 60.803 57.143 0.00 0.00 0.00 5.52
2314 6384 1.207329 GAAGGTGGACTATTGAGCGGT 59.793 52.381 0.00 0.00 0.00 5.68
2315 6385 2.154567 AGGTGGACTATTGAGCGGTA 57.845 50.000 0.00 0.00 0.00 4.02
2316 6386 2.032620 AGGTGGACTATTGAGCGGTAG 58.967 52.381 0.00 0.00 0.00 3.18
2317 6387 1.538419 GGTGGACTATTGAGCGGTAGC 60.538 57.143 0.00 0.00 45.58 3.58
2337 6407 3.171277 GCAACATGCAAAACTCGTATCC 58.829 45.455 0.00 0.00 44.26 2.59
2338 6408 3.365868 GCAACATGCAAAACTCGTATCCA 60.366 43.478 0.00 0.00 44.26 3.41
2339 6409 4.406069 CAACATGCAAAACTCGTATCCAG 58.594 43.478 0.00 0.00 0.00 3.86
2340 6410 2.420022 ACATGCAAAACTCGTATCCAGC 59.580 45.455 0.00 0.00 0.00 4.85
2341 6411 1.448985 TGCAAAACTCGTATCCAGCC 58.551 50.000 0.00 0.00 0.00 4.85
2342 6412 1.271108 TGCAAAACTCGTATCCAGCCA 60.271 47.619 0.00 0.00 0.00 4.75
2343 6413 1.810151 GCAAAACTCGTATCCAGCCAA 59.190 47.619 0.00 0.00 0.00 4.52
2344 6414 2.159517 GCAAAACTCGTATCCAGCCAAG 60.160 50.000 0.00 0.00 0.00 3.61
2345 6415 1.739067 AAACTCGTATCCAGCCAAGC 58.261 50.000 0.00 0.00 0.00 4.01
2346 6416 0.460284 AACTCGTATCCAGCCAAGCG 60.460 55.000 0.00 0.00 0.00 4.68
2347 6417 2.202878 TCGTATCCAGCCAAGCGC 60.203 61.111 0.00 0.00 37.98 5.92
2348 6418 3.630148 CGTATCCAGCCAAGCGCG 61.630 66.667 0.00 0.00 44.76 6.86
2349 6419 2.202878 GTATCCAGCCAAGCGCGA 60.203 61.111 12.10 0.00 44.76 5.87
2350 6420 2.202878 TATCCAGCCAAGCGCGAC 60.203 61.111 12.10 0.04 44.76 5.19
2351 6421 3.733344 TATCCAGCCAAGCGCGACC 62.733 63.158 12.10 0.00 44.76 4.79
2355 6425 4.626081 AGCCAAGCGCGACCTGTT 62.626 61.111 12.10 0.00 44.76 3.16
2356 6426 4.090057 GCCAAGCGCGACCTGTTC 62.090 66.667 12.10 0.00 0.00 3.18
2357 6427 2.664851 CCAAGCGCGACCTGTTCA 60.665 61.111 12.10 0.00 0.00 3.18
2358 6428 2.551270 CAAGCGCGACCTGTTCAC 59.449 61.111 12.10 0.00 0.00 3.18
2359 6429 3.036084 AAGCGCGACCTGTTCACG 61.036 61.111 12.10 0.00 32.66 4.35
2360 6430 3.493830 AAGCGCGACCTGTTCACGA 62.494 57.895 12.10 0.00 30.97 4.35
2361 6431 3.470567 GCGCGACCTGTTCACGAG 61.471 66.667 12.10 0.00 30.97 4.18
2362 6432 3.470567 CGCGACCTGTTCACGAGC 61.471 66.667 0.00 0.00 30.97 5.03
2363 6433 3.470567 GCGACCTGTTCACGAGCG 61.471 66.667 0.00 0.00 0.00 5.03
2364 6434 2.254350 CGACCTGTTCACGAGCGA 59.746 61.111 0.00 0.00 0.00 4.93
2365 6435 1.371267 CGACCTGTTCACGAGCGAA 60.371 57.895 0.00 0.00 0.00 4.70
2366 6436 1.337817 CGACCTGTTCACGAGCGAAG 61.338 60.000 0.00 0.00 0.00 3.79
2367 6437 0.318784 GACCTGTTCACGAGCGAAGT 60.319 55.000 0.00 0.00 0.00 3.01
2368 6438 0.597637 ACCTGTTCACGAGCGAAGTG 60.598 55.000 0.00 3.41 40.71 3.16
2369 6439 0.318699 CCTGTTCACGAGCGAAGTGA 60.319 55.000 7.65 7.65 45.68 3.41
2375 6445 2.716398 TCACGAGCGAAGTGAATATCG 58.284 47.619 8.99 0.00 44.56 2.92
2376 6446 2.353579 TCACGAGCGAAGTGAATATCGA 59.646 45.455 8.99 0.00 44.56 3.59
2377 6447 2.716504 CACGAGCGAAGTGAATATCGAG 59.283 50.000 0.00 0.00 41.83 4.04
2378 6448 2.355132 ACGAGCGAAGTGAATATCGAGT 59.645 45.455 0.00 0.00 41.43 4.18
2379 6449 3.181499 ACGAGCGAAGTGAATATCGAGTT 60.181 43.478 0.00 0.00 41.43 3.01
2380 6450 3.791887 CGAGCGAAGTGAATATCGAGTTT 59.208 43.478 0.00 0.00 41.43 2.66
2381 6451 4.316722 CGAGCGAAGTGAATATCGAGTTTG 60.317 45.833 0.00 0.00 41.43 2.93
2382 6452 4.744570 AGCGAAGTGAATATCGAGTTTGA 58.255 39.130 0.00 0.00 41.43 2.69
2383 6453 5.352284 AGCGAAGTGAATATCGAGTTTGAT 58.648 37.500 0.00 0.00 41.43 2.57
2384 6454 5.233050 AGCGAAGTGAATATCGAGTTTGATG 59.767 40.000 0.00 0.00 41.43 3.07
2385 6455 5.427082 CGAAGTGAATATCGAGTTTGATGC 58.573 41.667 0.00 0.00 41.43 3.91
2386 6456 5.395325 AAGTGAATATCGAGTTTGATGCG 57.605 39.130 0.00 0.00 0.00 4.73
2387 6457 3.246226 AGTGAATATCGAGTTTGATGCGC 59.754 43.478 0.00 0.00 0.00 6.09
2388 6458 3.246226 GTGAATATCGAGTTTGATGCGCT 59.754 43.478 9.73 0.00 0.00 5.92
2389 6459 3.871006 TGAATATCGAGTTTGATGCGCTT 59.129 39.130 9.73 0.55 0.00 4.68
2390 6460 4.025730 TGAATATCGAGTTTGATGCGCTTC 60.026 41.667 15.88 15.88 0.00 3.86
2391 6461 0.647410 ATCGAGTTTGATGCGCTTCG 59.353 50.000 17.33 10.67 0.00 3.79
2392 6462 0.666274 TCGAGTTTGATGCGCTTCGT 60.666 50.000 17.33 3.32 0.00 3.85
2393 6463 0.246912 CGAGTTTGATGCGCTTCGTC 60.247 55.000 17.33 10.57 0.00 4.20
2394 6464 0.095417 GAGTTTGATGCGCTTCGTCC 59.905 55.000 17.33 8.00 0.00 4.79
2395 6465 1.225745 GTTTGATGCGCTTCGTCCG 60.226 57.895 17.33 0.00 0.00 4.79
2396 6466 2.387445 TTTGATGCGCTTCGTCCGG 61.387 57.895 17.33 0.00 0.00 5.14
2406 6476 2.651945 TCGTCCGGCGACAATGAA 59.348 55.556 9.30 0.00 45.68 2.57
2407 6477 1.735198 TCGTCCGGCGACAATGAAC 60.735 57.895 9.30 0.00 45.68 3.18
2408 6478 2.024868 CGTCCGGCGACAATGAACA 61.025 57.895 9.30 0.00 44.77 3.18
2409 6479 1.561717 CGTCCGGCGACAATGAACAA 61.562 55.000 9.30 0.00 44.77 2.83
2410 6480 0.165944 GTCCGGCGACAATGAACAAG 59.834 55.000 9.30 0.00 38.99 3.16
2411 6481 0.034198 TCCGGCGACAATGAACAAGA 59.966 50.000 9.30 0.00 0.00 3.02
2412 6482 1.086696 CCGGCGACAATGAACAAGAT 58.913 50.000 9.30 0.00 0.00 2.40
2413 6483 1.468520 CCGGCGACAATGAACAAGATT 59.531 47.619 9.30 0.00 0.00 2.40
2414 6484 2.508867 CGGCGACAATGAACAAGATTG 58.491 47.619 0.00 0.00 36.94 2.67
2415 6485 2.728846 CGGCGACAATGAACAAGATTGG 60.729 50.000 0.00 0.00 35.48 3.16
2416 6486 2.253603 GCGACAATGAACAAGATTGGC 58.746 47.619 0.00 0.00 35.74 4.52
2418 6488 2.867429 GACAATGAACAAGATTGGCGG 58.133 47.619 0.00 0.00 35.48 6.13
2419 6489 1.545582 ACAATGAACAAGATTGGCGGG 59.454 47.619 0.00 0.00 35.48 6.13
2420 6490 1.135024 CAATGAACAAGATTGGCGGGG 60.135 52.381 0.00 0.00 0.00 5.73
2426 6496 1.000896 AAGATTGGCGGGGAGGTTG 60.001 57.895 0.00 0.00 0.00 3.77
2427 6497 1.497309 AAGATTGGCGGGGAGGTTGA 61.497 55.000 0.00 0.00 0.00 3.18
2429 6499 1.076777 ATTGGCGGGGAGGTTGATG 60.077 57.895 0.00 0.00 0.00 3.07
2461 6531 9.626045 AAGAAAATAGGCAGTTTTTCGATTAAG 57.374 29.630 11.38 0.00 43.37 1.85
2514 6584 8.621532 ACATTGACAGTATTGATAACACACTT 57.378 30.769 0.00 0.00 0.00 3.16
2578 6648 4.694037 ACATCTACGCATATCGCTAGTACA 59.306 41.667 0.00 0.00 43.23 2.90
2629 6699 7.166167 GGATAAACGATGTATACCCTCCAATT 58.834 38.462 0.00 0.00 0.00 2.32
2761 6831 1.614903 ACGAAGGTGATGTGGACGTAA 59.385 47.619 0.00 0.00 0.00 3.18
2802 6872 2.160813 CGCGTAGTTGCTACCCAAAAAT 59.839 45.455 0.00 0.00 33.79 1.82
2815 6885 3.031013 CCCAAAAATCTAATCGCCCCTT 58.969 45.455 0.00 0.00 0.00 3.95
2926 6997 2.258591 GCAGCAGAGGAACGACGA 59.741 61.111 0.00 0.00 0.00 4.20
2951 7022 2.956964 GAGGCGGAGATGCGTTCG 60.957 66.667 0.00 0.00 35.06 3.95
2964 7036 2.322081 CGTTCGGTTTCATGGCGGT 61.322 57.895 0.00 0.00 0.00 5.68
3052 7124 0.108329 CAAGTCGGTAGCCCACGATT 60.108 55.000 0.00 0.00 41.53 3.34
3074 7146 2.105128 GTCTCAGATCGTGGCCCG 59.895 66.667 0.00 3.30 38.13 6.13
3131 7203 4.844420 GCGCATAGGAGTGAGCTT 57.156 55.556 0.30 0.00 41.01 3.74
3267 7364 1.217183 AGCTCCAATGGCATGAGGAAT 59.783 47.619 18.94 10.54 0.00 3.01
3272 7369 4.464008 TCCAATGGCATGAGGAATAGAAC 58.536 43.478 16.88 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.995991 CCGGCGTGAGTGATAAACG 59.004 57.895 6.01 0.00 40.22 3.60
4 5 0.739813 AGCCGGCGTGAGTGATAAAC 60.740 55.000 23.20 0.00 0.00 2.01
5 6 0.739462 CAGCCGGCGTGAGTGATAAA 60.739 55.000 23.20 0.00 0.00 1.40
6 7 1.153647 CAGCCGGCGTGAGTGATAA 60.154 57.895 23.20 0.00 0.00 1.75
7 8 2.494445 CAGCCGGCGTGAGTGATA 59.506 61.111 23.20 0.00 0.00 2.15
32 33 4.770287 CTCAATCTTCGATGCAATACAGC 58.230 43.478 0.00 0.00 0.00 4.40
33 34 4.510711 AGCTCAATCTTCGATGCAATACAG 59.489 41.667 0.00 0.00 0.00 2.74
34 35 4.271776 CAGCTCAATCTTCGATGCAATACA 59.728 41.667 0.00 0.00 0.00 2.29
35 36 4.272018 ACAGCTCAATCTTCGATGCAATAC 59.728 41.667 0.00 0.00 0.00 1.89
36 37 4.445453 ACAGCTCAATCTTCGATGCAATA 58.555 39.130 0.00 0.00 0.00 1.90
37 38 3.276857 ACAGCTCAATCTTCGATGCAAT 58.723 40.909 0.00 0.00 0.00 3.56
38 39 2.703416 ACAGCTCAATCTTCGATGCAA 58.297 42.857 0.00 0.00 0.00 4.08
39 40 2.391616 ACAGCTCAATCTTCGATGCA 57.608 45.000 0.00 0.00 0.00 3.96
40 41 2.220593 GCTACAGCTCAATCTTCGATGC 59.779 50.000 0.00 0.00 38.21 3.91
41 42 2.799412 GGCTACAGCTCAATCTTCGATG 59.201 50.000 0.54 0.00 41.70 3.84
42 43 2.544694 CGGCTACAGCTCAATCTTCGAT 60.545 50.000 0.54 0.00 41.70 3.59
43 44 1.202302 CGGCTACAGCTCAATCTTCGA 60.202 52.381 0.54 0.00 41.70 3.71
44 45 1.203928 CGGCTACAGCTCAATCTTCG 58.796 55.000 0.54 0.00 41.70 3.79
45 46 1.576356 CCGGCTACAGCTCAATCTTC 58.424 55.000 0.54 0.00 41.70 2.87
46 47 0.179000 CCCGGCTACAGCTCAATCTT 59.821 55.000 0.00 0.00 41.70 2.40
47 48 1.826024 CCCGGCTACAGCTCAATCT 59.174 57.895 0.00 0.00 41.70 2.40
48 49 1.889573 GCCCGGCTACAGCTCAATC 60.890 63.158 0.71 0.00 41.70 2.67
49 50 2.190578 GCCCGGCTACAGCTCAAT 59.809 61.111 0.71 0.00 41.70 2.57
50 51 4.451150 CGCCCGGCTACAGCTCAA 62.451 66.667 8.05 0.00 41.70 3.02
52 53 2.561956 TATCGCCCGGCTACAGCTC 61.562 63.158 8.05 0.00 41.70 4.09
53 54 2.520982 TATCGCCCGGCTACAGCT 60.521 61.111 8.05 0.00 41.70 4.24
54 55 2.355956 GTATCGCCCGGCTACAGC 60.356 66.667 8.05 0.00 41.14 4.40
55 56 1.299926 GTGTATCGCCCGGCTACAG 60.300 63.158 10.93 0.00 0.00 2.74
56 57 2.809706 GTGTATCGCCCGGCTACA 59.190 61.111 8.05 7.61 0.00 2.74
57 58 2.354305 CGTGTATCGCCCGGCTAC 60.354 66.667 8.05 4.87 0.00 3.58
58 59 3.598715 CCGTGTATCGCCCGGCTA 61.599 66.667 8.05 0.00 38.35 3.93
60 61 4.944372 CTCCGTGTATCGCCCGGC 62.944 72.222 0.00 0.00 41.46 6.13
61 62 4.944372 GCTCCGTGTATCGCCCGG 62.944 72.222 0.00 0.00 43.03 5.73
77 78 3.766496 GAGAGAGAAGAGCCGGCGC 62.766 68.421 23.92 23.92 0.00 6.53
78 79 2.058829 GAGAGAGAGAAGAGCCGGCG 62.059 65.000 23.20 0.00 0.00 6.46
79 80 0.751643 AGAGAGAGAGAAGAGCCGGC 60.752 60.000 21.89 21.89 0.00 6.13
80 81 1.134098 AGAGAGAGAGAGAAGAGCCGG 60.134 57.143 0.00 0.00 0.00 6.13
81 82 2.332063 AGAGAGAGAGAGAAGAGCCG 57.668 55.000 0.00 0.00 0.00 5.52
82 83 3.763897 ACAAAGAGAGAGAGAGAAGAGCC 59.236 47.826 0.00 0.00 0.00 4.70
83 84 5.391312 AACAAAGAGAGAGAGAGAAGAGC 57.609 43.478 0.00 0.00 0.00 4.09
84 85 7.040478 TGAGAAACAAAGAGAGAGAGAGAAGAG 60.040 40.741 0.00 0.00 0.00 2.85
85 86 6.775142 TGAGAAACAAAGAGAGAGAGAGAAGA 59.225 38.462 0.00 0.00 0.00 2.87
86 87 6.863126 GTGAGAAACAAAGAGAGAGAGAGAAG 59.137 42.308 0.00 0.00 0.00 2.85
87 88 6.549364 AGTGAGAAACAAAGAGAGAGAGAGAA 59.451 38.462 0.00 0.00 0.00 2.87
88 89 6.068010 AGTGAGAAACAAAGAGAGAGAGAGA 58.932 40.000 0.00 0.00 0.00 3.10
89 90 6.331369 AGTGAGAAACAAAGAGAGAGAGAG 57.669 41.667 0.00 0.00 0.00 3.20
90 91 5.242838 GGAGTGAGAAACAAAGAGAGAGAGA 59.757 44.000 0.00 0.00 0.00 3.10
91 92 5.243730 AGGAGTGAGAAACAAAGAGAGAGAG 59.756 44.000 0.00 0.00 0.00 3.20
92 93 5.144100 AGGAGTGAGAAACAAAGAGAGAGA 58.856 41.667 0.00 0.00 0.00 3.10
93 94 5.467035 AGGAGTGAGAAACAAAGAGAGAG 57.533 43.478 0.00 0.00 0.00 3.20
94 95 4.282195 GGAGGAGTGAGAAACAAAGAGAGA 59.718 45.833 0.00 0.00 0.00 3.10
95 96 4.039730 TGGAGGAGTGAGAAACAAAGAGAG 59.960 45.833 0.00 0.00 0.00 3.20
96 97 3.967326 TGGAGGAGTGAGAAACAAAGAGA 59.033 43.478 0.00 0.00 0.00 3.10
97 98 4.314121 CTGGAGGAGTGAGAAACAAAGAG 58.686 47.826 0.00 0.00 0.00 2.85
98 99 3.495100 GCTGGAGGAGTGAGAAACAAAGA 60.495 47.826 0.00 0.00 0.00 2.52
99 100 2.810852 GCTGGAGGAGTGAGAAACAAAG 59.189 50.000 0.00 0.00 0.00 2.77
100 101 2.172505 TGCTGGAGGAGTGAGAAACAAA 59.827 45.455 0.00 0.00 0.00 2.83
101 102 1.768275 TGCTGGAGGAGTGAGAAACAA 59.232 47.619 0.00 0.00 0.00 2.83
102 103 1.423584 TGCTGGAGGAGTGAGAAACA 58.576 50.000 0.00 0.00 0.00 2.83
103 104 2.421619 CTTGCTGGAGGAGTGAGAAAC 58.578 52.381 0.00 0.00 0.00 2.78
104 105 1.349026 CCTTGCTGGAGGAGTGAGAAA 59.651 52.381 0.00 0.00 39.25 2.52
105 106 0.979665 CCTTGCTGGAGGAGTGAGAA 59.020 55.000 0.00 0.00 39.25 2.87
106 107 0.115152 TCCTTGCTGGAGGAGTGAGA 59.885 55.000 0.69 0.00 40.87 3.27
107 108 2.676232 TCCTTGCTGGAGGAGTGAG 58.324 57.895 0.69 0.00 40.87 3.51
108 109 4.975490 TCCTTGCTGGAGGAGTGA 57.025 55.556 0.69 0.00 40.87 3.41
120 121 7.307337 GGTTTTACATGTCAGCAAAAATCCTTG 60.307 37.037 0.00 0.00 0.00 3.61
121 122 6.705825 GGTTTTACATGTCAGCAAAAATCCTT 59.294 34.615 0.00 0.00 0.00 3.36
122 123 6.041979 AGGTTTTACATGTCAGCAAAAATCCT 59.958 34.615 0.00 7.41 0.00 3.24
123 124 6.223120 AGGTTTTACATGTCAGCAAAAATCC 58.777 36.000 0.00 5.14 0.00 3.01
124 125 7.713764 AAGGTTTTACATGTCAGCAAAAATC 57.286 32.000 0.00 3.68 0.00 2.17
126 127 9.906660 CTATAAGGTTTTACATGTCAGCAAAAA 57.093 29.630 0.00 0.00 0.00 1.94
127 128 8.026607 GCTATAAGGTTTTACATGTCAGCAAAA 58.973 33.333 0.00 0.27 0.00 2.44
128 129 7.362574 GGCTATAAGGTTTTACATGTCAGCAAA 60.363 37.037 0.00 0.00 0.00 3.68
129 130 6.094881 GGCTATAAGGTTTTACATGTCAGCAA 59.905 38.462 0.00 0.00 0.00 3.91
130 131 5.588648 GGCTATAAGGTTTTACATGTCAGCA 59.411 40.000 0.00 0.00 0.00 4.41
131 132 5.588648 TGGCTATAAGGTTTTACATGTCAGC 59.411 40.000 0.00 0.00 0.00 4.26
132 133 6.238484 GCTGGCTATAAGGTTTTACATGTCAG 60.238 42.308 0.00 0.00 0.00 3.51
133 134 5.588648 GCTGGCTATAAGGTTTTACATGTCA 59.411 40.000 0.00 0.00 0.00 3.58
134 135 5.823045 AGCTGGCTATAAGGTTTTACATGTC 59.177 40.000 0.00 0.00 0.00 3.06
135 136 5.590259 CAGCTGGCTATAAGGTTTTACATGT 59.410 40.000 5.57 2.69 0.00 3.21
136 137 5.822519 TCAGCTGGCTATAAGGTTTTACATG 59.177 40.000 15.13 0.00 0.00 3.21
137 138 5.823045 GTCAGCTGGCTATAAGGTTTTACAT 59.177 40.000 12.09 0.00 0.00 2.29
138 139 5.045869 AGTCAGCTGGCTATAAGGTTTTACA 60.046 40.000 21.80 0.00 0.00 2.41
139 140 5.429130 AGTCAGCTGGCTATAAGGTTTTAC 58.571 41.667 21.80 1.24 0.00 2.01
140 141 5.693769 AGTCAGCTGGCTATAAGGTTTTA 57.306 39.130 21.80 0.00 0.00 1.52
141 142 4.576330 AGTCAGCTGGCTATAAGGTTTT 57.424 40.909 21.80 0.00 0.00 2.43
142 143 4.101741 CCTAGTCAGCTGGCTATAAGGTTT 59.898 45.833 27.43 2.13 31.06 3.27
143 144 3.643792 CCTAGTCAGCTGGCTATAAGGTT 59.356 47.826 27.43 2.91 31.06 3.50
144 145 3.235200 CCTAGTCAGCTGGCTATAAGGT 58.765 50.000 27.43 3.71 31.06 3.50
145 146 2.028567 GCCTAGTCAGCTGGCTATAAGG 60.029 54.545 27.43 26.24 43.05 2.69
146 147 3.311486 GCCTAGTCAGCTGGCTATAAG 57.689 52.381 27.43 18.00 43.05 1.73
152 153 2.629336 AATAAGCCTAGTCAGCTGGC 57.371 50.000 11.28 11.28 46.42 4.85
153 154 6.597832 AGTATAATAAGCCTAGTCAGCTGG 57.402 41.667 15.13 0.00 40.49 4.85
154 155 6.367422 GCAAGTATAATAAGCCTAGTCAGCTG 59.633 42.308 7.63 7.63 40.49 4.24
155 156 6.268847 AGCAAGTATAATAAGCCTAGTCAGCT 59.731 38.462 0.00 0.00 44.19 4.24
156 157 6.459923 AGCAAGTATAATAAGCCTAGTCAGC 58.540 40.000 0.00 0.00 0.00 4.26
157 158 7.891561 AGAGCAAGTATAATAAGCCTAGTCAG 58.108 38.462 0.00 0.00 0.00 3.51
158 159 7.841282 AGAGCAAGTATAATAAGCCTAGTCA 57.159 36.000 0.00 0.00 0.00 3.41
160 161 9.984190 GTTAAGAGCAAGTATAATAAGCCTAGT 57.016 33.333 0.00 0.00 0.00 2.57
161 162 9.425577 GGTTAAGAGCAAGTATAATAAGCCTAG 57.574 37.037 0.00 0.00 0.00 3.02
162 163 9.155785 AGGTTAAGAGCAAGTATAATAAGCCTA 57.844 33.333 0.00 0.00 0.00 3.93
163 164 8.035448 AGGTTAAGAGCAAGTATAATAAGCCT 57.965 34.615 0.00 0.00 0.00 4.58
164 165 9.425577 CTAGGTTAAGAGCAAGTATAATAAGCC 57.574 37.037 0.00 0.00 0.00 4.35
165 166 9.984190 ACTAGGTTAAGAGCAAGTATAATAAGC 57.016 33.333 0.00 0.00 0.00 3.09
169 170 8.136165 CGTCACTAGGTTAAGAGCAAGTATAAT 58.864 37.037 0.00 0.00 0.00 1.28
170 171 7.478322 CGTCACTAGGTTAAGAGCAAGTATAA 58.522 38.462 0.00 0.00 0.00 0.98
171 172 6.459298 GCGTCACTAGGTTAAGAGCAAGTATA 60.459 42.308 0.00 0.00 0.00 1.47
172 173 5.679127 GCGTCACTAGGTTAAGAGCAAGTAT 60.679 44.000 0.00 0.00 0.00 2.12
173 174 4.380233 GCGTCACTAGGTTAAGAGCAAGTA 60.380 45.833 0.00 0.00 0.00 2.24
174 175 3.614390 GCGTCACTAGGTTAAGAGCAAGT 60.614 47.826 0.00 0.00 0.00 3.16
175 176 2.924290 GCGTCACTAGGTTAAGAGCAAG 59.076 50.000 0.00 0.00 0.00 4.01
176 177 2.670229 CGCGTCACTAGGTTAAGAGCAA 60.670 50.000 0.00 0.00 0.00 3.91
177 178 1.135489 CGCGTCACTAGGTTAAGAGCA 60.135 52.381 0.00 0.00 0.00 4.26
178 179 1.131883 TCGCGTCACTAGGTTAAGAGC 59.868 52.381 5.77 0.00 0.00 4.09
179 180 2.791849 GCTCGCGTCACTAGGTTAAGAG 60.792 54.545 5.77 0.00 0.00 2.85
180 181 1.131883 GCTCGCGTCACTAGGTTAAGA 59.868 52.381 5.77 0.00 0.00 2.10
186 187 2.103143 CCAGCTCGCGTCACTAGG 59.897 66.667 5.77 0.00 0.00 3.02
189 190 3.057547 CTAGCCAGCTCGCGTCACT 62.058 63.158 5.77 0.00 0.00 3.41
282 283 4.351192 GGATTACATGCAAATCAACGACC 58.649 43.478 18.19 2.70 35.46 4.79
287 288 5.263599 ACAGAGGGATTACATGCAAATCAA 58.736 37.500 18.19 0.00 35.46 2.57
341 342 3.244078 ACGATGTTAGGCACTCACTCAAA 60.244 43.478 0.00 0.00 41.75 2.69
362 363 3.532542 GGATGTAAGACCAACCAGCTAC 58.467 50.000 0.00 0.00 0.00 3.58
363 364 2.167693 CGGATGTAAGACCAACCAGCTA 59.832 50.000 0.00 0.00 0.00 3.32
372 373 2.693267 AAAGCCTCGGATGTAAGACC 57.307 50.000 0.00 0.00 0.00 3.85
373 374 7.964604 ATAAATAAAGCCTCGGATGTAAGAC 57.035 36.000 0.00 0.00 0.00 3.01
374 375 8.974060 AAATAAATAAAGCCTCGGATGTAAGA 57.026 30.769 0.00 0.00 0.00 2.10
376 377 9.280174 CCTAAATAAATAAAGCCTCGGATGTAA 57.720 33.333 0.00 0.00 0.00 2.41
378 379 6.206829 GCCTAAATAAATAAAGCCTCGGATGT 59.793 38.462 0.00 0.00 0.00 3.06
420 3254 8.193250 ACGCATCATTTTACGTAAATAAGACT 57.807 30.769 20.72 7.45 36.91 3.24
440 3274 7.151999 TCAAAAGTTTACATCCATTACGCAT 57.848 32.000 0.00 0.00 0.00 4.73
442 3276 9.730420 ATAATCAAAAGTTTACATCCATTACGC 57.270 29.630 0.00 0.00 0.00 4.42
565 3401 5.106515 GGAAAGCTAAGAAACGCTGAAATCT 60.107 40.000 0.00 0.00 36.45 2.40
743 4728 1.373435 GTGGGGACGGATCACACAA 59.627 57.895 0.00 0.00 35.47 3.33
1019 5033 4.043059 AGGACTCTGAGACCAACACTAGTA 59.957 45.833 24.31 0.00 32.35 1.82
1029 5043 0.973496 GGGTGGAGGACTCTGAGACC 60.973 65.000 16.82 16.82 0.00 3.85
1092 5108 1.135746 GTCGTCGTCGTCATCTTCCTT 60.136 52.381 1.33 0.00 38.33 3.36
1227 5252 2.765699 GAGGTTGGAGAAGCTGATCTCT 59.234 50.000 13.76 0.37 44.30 3.10
1288 5314 1.701847 ACAGGAGCAGGATTCACAAGT 59.298 47.619 0.00 0.00 0.00 3.16
1292 5320 2.615912 GCATAACAGGAGCAGGATTCAC 59.384 50.000 0.00 0.00 0.00 3.18
1368 5396 0.847670 CGACTTGACACGCGTGTTTA 59.152 50.000 41.67 30.75 45.05 2.01
1376 5404 2.927618 CGTGGTGCGACTTGACACG 61.928 63.158 0.00 0.00 46.82 4.49
1393 5421 1.135527 TCCATTAGCGGTAACTGGTCG 59.864 52.381 23.17 8.93 0.00 4.79
1403 5431 4.832248 TCAATAGCCTAATCCATTAGCGG 58.168 43.478 1.29 0.00 38.69 5.52
1540 5568 3.359033 CAGGAGGAAAATGAGCCAATCA 58.641 45.455 0.00 0.00 43.70 2.57
1604 5632 4.568359 GCGCAGAGTGAAGATGAATCTAAA 59.432 41.667 0.30 0.00 35.76 1.85
1605 5633 4.115516 GCGCAGAGTGAAGATGAATCTAA 58.884 43.478 0.30 0.00 35.76 2.10
1608 5636 1.596727 GGCGCAGAGTGAAGATGAATC 59.403 52.381 10.83 0.00 0.00 2.52
1635 5663 8.320617 ACTTAGCACTGTAGTTCTAGTACTAGT 58.679 37.037 25.58 12.20 34.84 2.57
1637 5665 8.944029 CAACTTAGCACTGTAGTTCTAGTACTA 58.056 37.037 5.21 5.21 30.08 1.82
1638 5666 7.575343 GCAACTTAGCACTGTAGTTCTAGTACT 60.575 40.741 7.23 7.23 30.08 2.73
1639 5667 6.527372 GCAACTTAGCACTGTAGTTCTAGTAC 59.473 42.308 0.00 0.00 30.08 2.73
1646 5674 4.684703 CGTTAGCAACTTAGCACTGTAGTT 59.315 41.667 0.00 0.00 36.85 2.24
1980 6024 5.911280 GTCCAAATATCAGCGATTGTTCATG 59.089 40.000 0.00 0.00 0.00 3.07
2028 6076 3.371097 AAGGACGCATCGCCATCGT 62.371 57.895 0.00 0.00 39.33 3.73
2075 6135 8.887036 AAAGTTTATTTCACAACATTTCTCCC 57.113 30.769 0.00 0.00 0.00 4.30
2110 6170 1.741993 CACGCAACCTCAACTTTTCG 58.258 50.000 0.00 0.00 0.00 3.46
2157 6219 6.166279 CACCCTTGTACCTATATATGTGCAG 58.834 44.000 8.47 2.31 0.00 4.41
2204 6274 9.638300 CATGTATTTTTCTTCTTCGTATAGTGC 57.362 33.333 0.00 0.00 0.00 4.40
2214 6284 9.539194 AAGGGAGATTCATGTATTTTTCTTCTT 57.461 29.630 0.00 0.00 0.00 2.52
2236 6306 2.706952 TTTTCACTGCCGGGGAAGGG 62.707 60.000 2.18 0.00 38.71 3.95
2237 6307 1.228429 TTTTCACTGCCGGGGAAGG 60.228 57.895 2.18 0.00 38.71 3.46
2238 6308 1.852067 CGTTTTCACTGCCGGGGAAG 61.852 60.000 2.18 0.00 38.71 3.46
2239 6309 1.894756 CGTTTTCACTGCCGGGGAA 60.895 57.895 2.18 0.00 35.24 3.97
2240 6310 2.281208 CGTTTTCACTGCCGGGGA 60.281 61.111 2.18 0.00 0.00 4.81
2241 6311 2.593436 ACGTTTTCACTGCCGGGG 60.593 61.111 2.18 0.00 0.00 5.73
2242 6312 1.890041 TGACGTTTTCACTGCCGGG 60.890 57.895 2.18 0.00 0.00 5.73
2243 6313 3.725819 TGACGTTTTCACTGCCGG 58.274 55.556 0.00 0.00 0.00 6.13
2257 6327 3.883744 CTCTGTGTGGCCCGGTGAC 62.884 68.421 0.00 0.00 0.00 3.67
2258 6328 3.625897 CTCTGTGTGGCCCGGTGA 61.626 66.667 0.00 0.00 0.00 4.02
2259 6329 3.625897 TCTCTGTGTGGCCCGGTG 61.626 66.667 0.00 0.00 0.00 4.94
2260 6330 3.626924 GTCTCTGTGTGGCCCGGT 61.627 66.667 0.00 0.00 0.00 5.28
2261 6331 3.314331 AGTCTCTGTGTGGCCCGG 61.314 66.667 0.00 0.00 0.00 5.73
2262 6332 2.047844 CAGTCTCTGTGTGGCCCG 60.048 66.667 0.00 0.00 0.00 6.13
2263 6333 0.603975 GTTCAGTCTCTGTGTGGCCC 60.604 60.000 0.00 0.00 32.61 5.80
2264 6334 0.603975 GGTTCAGTCTCTGTGTGGCC 60.604 60.000 0.00 0.00 32.61 5.36
2265 6335 0.946221 CGGTTCAGTCTCTGTGTGGC 60.946 60.000 0.00 0.00 32.61 5.01
2266 6336 0.673985 TCGGTTCAGTCTCTGTGTGG 59.326 55.000 0.00 0.00 32.61 4.17
2267 6337 2.509052 TTCGGTTCAGTCTCTGTGTG 57.491 50.000 0.00 0.00 32.61 3.82
2268 6338 2.431057 AGTTTCGGTTCAGTCTCTGTGT 59.569 45.455 0.00 0.00 32.61 3.72
2269 6339 3.053455 GAGTTTCGGTTCAGTCTCTGTG 58.947 50.000 0.00 0.00 32.61 3.66
2270 6340 2.693591 TGAGTTTCGGTTCAGTCTCTGT 59.306 45.455 0.00 0.00 32.61 3.41
2271 6341 3.371102 TGAGTTTCGGTTCAGTCTCTG 57.629 47.619 0.00 0.00 0.00 3.35
2272 6342 3.366476 CGATGAGTTTCGGTTCAGTCTCT 60.366 47.826 0.00 0.00 35.50 3.10
2273 6343 2.917971 CGATGAGTTTCGGTTCAGTCTC 59.082 50.000 0.00 0.00 35.50 3.36
2274 6344 2.557056 TCGATGAGTTTCGGTTCAGTCT 59.443 45.455 0.00 0.00 39.56 3.24
2275 6345 2.942710 TCGATGAGTTTCGGTTCAGTC 58.057 47.619 0.00 0.00 39.56 3.51
2276 6346 3.318017 CTTCGATGAGTTTCGGTTCAGT 58.682 45.455 0.00 0.00 39.56 3.41
2277 6347 2.668457 CCTTCGATGAGTTTCGGTTCAG 59.332 50.000 0.00 0.00 39.56 3.02
2278 6348 2.036733 ACCTTCGATGAGTTTCGGTTCA 59.963 45.455 0.00 0.00 39.56 3.18
2279 6349 2.412089 CACCTTCGATGAGTTTCGGTTC 59.588 50.000 0.00 0.00 39.56 3.62
2280 6350 2.413837 CACCTTCGATGAGTTTCGGTT 58.586 47.619 0.00 0.00 39.56 4.44
2281 6351 1.337823 CCACCTTCGATGAGTTTCGGT 60.338 52.381 0.00 0.00 39.56 4.69
2282 6352 1.067142 TCCACCTTCGATGAGTTTCGG 60.067 52.381 0.00 0.00 39.56 4.30
2283 6353 1.993370 GTCCACCTTCGATGAGTTTCG 59.007 52.381 0.00 0.00 40.46 3.46
2284 6354 3.320673 AGTCCACCTTCGATGAGTTTC 57.679 47.619 0.00 0.00 0.00 2.78
2285 6355 5.046591 TCAATAGTCCACCTTCGATGAGTTT 60.047 40.000 0.00 0.00 0.00 2.66
2286 6356 4.466370 TCAATAGTCCACCTTCGATGAGTT 59.534 41.667 0.00 0.00 0.00 3.01
2287 6357 4.023980 TCAATAGTCCACCTTCGATGAGT 58.976 43.478 0.00 0.00 0.00 3.41
2288 6358 4.615949 CTCAATAGTCCACCTTCGATGAG 58.384 47.826 0.00 0.00 0.00 2.90
2289 6359 3.181475 GCTCAATAGTCCACCTTCGATGA 60.181 47.826 0.00 0.00 0.00 2.92
2290 6360 3.126831 GCTCAATAGTCCACCTTCGATG 58.873 50.000 0.00 0.00 0.00 3.84
2291 6361 2.223829 CGCTCAATAGTCCACCTTCGAT 60.224 50.000 0.00 0.00 0.00 3.59
2292 6362 1.134367 CGCTCAATAGTCCACCTTCGA 59.866 52.381 0.00 0.00 0.00 3.71
2293 6363 1.560923 CGCTCAATAGTCCACCTTCG 58.439 55.000 0.00 0.00 0.00 3.79
2294 6364 1.207329 ACCGCTCAATAGTCCACCTTC 59.793 52.381 0.00 0.00 0.00 3.46
2295 6365 1.276622 ACCGCTCAATAGTCCACCTT 58.723 50.000 0.00 0.00 0.00 3.50
2296 6366 2.032620 CTACCGCTCAATAGTCCACCT 58.967 52.381 0.00 0.00 0.00 4.00
2297 6367 1.538419 GCTACCGCTCAATAGTCCACC 60.538 57.143 0.00 0.00 0.00 4.61
2298 6368 1.136305 TGCTACCGCTCAATAGTCCAC 59.864 52.381 0.00 0.00 36.97 4.02
2299 6369 1.480789 TGCTACCGCTCAATAGTCCA 58.519 50.000 0.00 0.00 36.97 4.02
2300 6370 2.202566 GTTGCTACCGCTCAATAGTCC 58.797 52.381 0.00 0.00 36.97 3.85
2301 6371 2.888594 TGTTGCTACCGCTCAATAGTC 58.111 47.619 0.00 0.00 36.97 2.59
2302 6372 3.198068 CATGTTGCTACCGCTCAATAGT 58.802 45.455 0.00 0.00 36.97 2.12
2303 6373 2.032549 GCATGTTGCTACCGCTCAATAG 60.033 50.000 0.00 0.00 40.96 1.73
2304 6374 1.939934 GCATGTTGCTACCGCTCAATA 59.060 47.619 0.00 0.00 40.96 1.90
2305 6375 0.734889 GCATGTTGCTACCGCTCAAT 59.265 50.000 0.00 0.00 40.96 2.57
2306 6376 0.605050 TGCATGTTGCTACCGCTCAA 60.605 50.000 10.24 0.00 45.31 3.02
2307 6377 0.605050 TTGCATGTTGCTACCGCTCA 60.605 50.000 10.24 0.00 45.31 4.26
2308 6378 0.521291 TTTGCATGTTGCTACCGCTC 59.479 50.000 10.24 0.00 45.31 5.03
2309 6379 0.958091 TTTTGCATGTTGCTACCGCT 59.042 45.000 10.24 0.00 45.31 5.52
2310 6380 1.059942 GTTTTGCATGTTGCTACCGC 58.940 50.000 0.75 0.00 45.31 5.68
2311 6381 2.584791 GAGTTTTGCATGTTGCTACCG 58.415 47.619 0.75 0.00 45.31 4.02
2312 6382 2.031157 ACGAGTTTTGCATGTTGCTACC 60.031 45.455 0.75 0.00 45.31 3.18
2313 6383 3.268013 ACGAGTTTTGCATGTTGCTAC 57.732 42.857 0.75 0.00 45.31 3.58
2314 6384 4.094294 GGATACGAGTTTTGCATGTTGCTA 59.906 41.667 0.75 0.00 45.31 3.49
2315 6385 3.119849 GGATACGAGTTTTGCATGTTGCT 60.120 43.478 0.75 0.00 45.31 3.91
2316 6386 3.171277 GGATACGAGTTTTGCATGTTGC 58.829 45.455 0.00 0.00 45.29 4.17
2317 6387 4.406069 CTGGATACGAGTTTTGCATGTTG 58.594 43.478 0.00 0.00 42.51 3.33
2318 6388 3.119849 GCTGGATACGAGTTTTGCATGTT 60.120 43.478 0.00 0.00 42.51 2.71
2319 6389 2.420022 GCTGGATACGAGTTTTGCATGT 59.580 45.455 0.00 0.00 42.51 3.21
2320 6390 2.223340 GGCTGGATACGAGTTTTGCATG 60.223 50.000 0.00 0.00 42.51 4.06
2321 6391 2.017049 GGCTGGATACGAGTTTTGCAT 58.983 47.619 0.00 0.00 42.51 3.96
2322 6392 1.271108 TGGCTGGATACGAGTTTTGCA 60.271 47.619 0.00 0.00 42.51 4.08
2323 6393 1.448985 TGGCTGGATACGAGTTTTGC 58.551 50.000 0.00 0.00 42.51 3.68
2324 6394 2.159517 GCTTGGCTGGATACGAGTTTTG 60.160 50.000 0.00 0.00 42.51 2.44
2325 6395 2.084546 GCTTGGCTGGATACGAGTTTT 58.915 47.619 0.00 0.00 42.51 2.43
2326 6396 1.739067 GCTTGGCTGGATACGAGTTT 58.261 50.000 0.00 0.00 42.51 2.66
2327 6397 0.460284 CGCTTGGCTGGATACGAGTT 60.460 55.000 0.00 0.00 42.51 3.01
2328 6398 1.141881 CGCTTGGCTGGATACGAGT 59.858 57.895 0.00 0.00 42.51 4.18
2329 6399 2.240500 GCGCTTGGCTGGATACGAG 61.241 63.158 0.00 0.00 39.11 4.18
2330 6400 2.202878 GCGCTTGGCTGGATACGA 60.203 61.111 0.00 0.00 39.11 3.43
2331 6401 3.630148 CGCGCTTGGCTGGATACG 61.630 66.667 5.56 0.00 40.44 3.06
2332 6402 2.202878 TCGCGCTTGGCTGGATAC 60.203 61.111 5.56 0.00 40.44 2.24
2333 6403 2.202878 GTCGCGCTTGGCTGGATA 60.203 61.111 5.56 0.00 40.44 2.59
2338 6408 4.626081 AACAGGTCGCGCTTGGCT 62.626 61.111 5.56 2.07 40.44 4.75
2339 6409 4.090057 GAACAGGTCGCGCTTGGC 62.090 66.667 5.56 0.00 38.69 4.52
2340 6410 2.664851 TGAACAGGTCGCGCTTGG 60.665 61.111 5.56 2.56 0.00 3.61
2341 6411 2.551270 GTGAACAGGTCGCGCTTG 59.449 61.111 5.56 6.14 0.00 4.01
2346 6416 3.470567 CGCTCGTGAACAGGTCGC 61.471 66.667 0.00 0.00 0.00 5.19
2347 6417 1.337817 CTTCGCTCGTGAACAGGTCG 61.338 60.000 0.00 0.00 0.00 4.79
2348 6418 0.318784 ACTTCGCTCGTGAACAGGTC 60.319 55.000 0.00 0.00 0.00 3.85
2349 6419 0.597637 CACTTCGCTCGTGAACAGGT 60.598 55.000 0.00 0.00 34.35 4.00
2350 6420 0.318699 TCACTTCGCTCGTGAACAGG 60.319 55.000 0.00 0.00 38.36 4.00
2351 6421 1.487482 TTCACTTCGCTCGTGAACAG 58.513 50.000 9.06 0.00 44.03 3.16
2352 6422 3.652292 TTCACTTCGCTCGTGAACA 57.348 47.368 9.06 0.00 44.03 3.18
2355 6425 2.353579 TCGATATTCACTTCGCTCGTGA 59.646 45.455 0.00 0.00 39.45 4.35
2356 6426 2.716398 TCGATATTCACTTCGCTCGTG 58.284 47.619 0.00 0.00 35.39 4.35
2357 6427 2.355132 ACTCGATATTCACTTCGCTCGT 59.645 45.455 0.00 0.00 35.39 4.18
2358 6428 2.988343 ACTCGATATTCACTTCGCTCG 58.012 47.619 0.00 0.00 35.39 5.03
2359 6429 4.798907 TCAAACTCGATATTCACTTCGCTC 59.201 41.667 0.00 0.00 35.39 5.03
2360 6430 4.744570 TCAAACTCGATATTCACTTCGCT 58.255 39.130 0.00 0.00 35.39 4.93
2361 6431 5.427082 CATCAAACTCGATATTCACTTCGC 58.573 41.667 0.00 0.00 35.39 4.70
2362 6432 5.427082 GCATCAAACTCGATATTCACTTCG 58.573 41.667 0.00 0.00 36.72 3.79
2363 6433 5.427082 CGCATCAAACTCGATATTCACTTC 58.573 41.667 0.00 0.00 0.00 3.01
2364 6434 4.260375 GCGCATCAAACTCGATATTCACTT 60.260 41.667 0.30 0.00 0.00 3.16
2365 6435 3.246226 GCGCATCAAACTCGATATTCACT 59.754 43.478 0.30 0.00 0.00 3.41
2366 6436 3.246226 AGCGCATCAAACTCGATATTCAC 59.754 43.478 11.47 0.00 0.00 3.18
2367 6437 3.457234 AGCGCATCAAACTCGATATTCA 58.543 40.909 11.47 0.00 0.00 2.57
2368 6438 4.449779 GAAGCGCATCAAACTCGATATTC 58.550 43.478 11.47 0.00 0.00 1.75
2369 6439 3.060272 CGAAGCGCATCAAACTCGATATT 60.060 43.478 11.47 0.00 0.00 1.28
2370 6440 2.472861 CGAAGCGCATCAAACTCGATAT 59.527 45.455 11.47 0.00 0.00 1.63
2371 6441 1.852280 CGAAGCGCATCAAACTCGATA 59.148 47.619 11.47 0.00 0.00 2.92
2372 6442 0.647410 CGAAGCGCATCAAACTCGAT 59.353 50.000 11.47 0.00 0.00 3.59
2373 6443 0.666274 ACGAAGCGCATCAAACTCGA 60.666 50.000 11.47 0.00 0.00 4.04
2374 6444 0.246912 GACGAAGCGCATCAAACTCG 60.247 55.000 11.47 8.32 0.00 4.18
2375 6445 0.095417 GGACGAAGCGCATCAAACTC 59.905 55.000 11.47 0.00 0.00 3.01
2376 6446 1.626654 CGGACGAAGCGCATCAAACT 61.627 55.000 11.47 0.00 0.00 2.66
2377 6447 1.225745 CGGACGAAGCGCATCAAAC 60.226 57.895 11.47 0.93 0.00 2.93
2378 6448 2.387445 CCGGACGAAGCGCATCAAA 61.387 57.895 11.47 0.00 0.00 2.69
2379 6449 2.813474 CCGGACGAAGCGCATCAA 60.813 61.111 11.47 0.00 0.00 2.57
2390 6460 1.561717 TTGTTCATTGTCGCCGGACG 61.562 55.000 5.05 9.12 46.49 4.79
2391 6461 0.165944 CTTGTTCATTGTCGCCGGAC 59.834 55.000 5.05 0.00 43.71 4.79
2392 6462 0.034198 TCTTGTTCATTGTCGCCGGA 59.966 50.000 5.05 0.00 0.00 5.14
2393 6463 1.086696 ATCTTGTTCATTGTCGCCGG 58.913 50.000 0.00 0.00 0.00 6.13
2394 6464 2.508867 CAATCTTGTTCATTGTCGCCG 58.491 47.619 0.00 0.00 0.00 6.46
2395 6465 2.867429 CCAATCTTGTTCATTGTCGCC 58.133 47.619 0.00 0.00 30.40 5.54
2396 6466 2.253603 GCCAATCTTGTTCATTGTCGC 58.746 47.619 0.00 0.00 30.40 5.19
2397 6467 2.508867 CGCCAATCTTGTTCATTGTCG 58.491 47.619 0.00 0.00 30.40 4.35
2398 6468 2.415893 CCCGCCAATCTTGTTCATTGTC 60.416 50.000 0.00 0.00 30.40 3.18
2399 6469 1.545582 CCCGCCAATCTTGTTCATTGT 59.454 47.619 0.00 0.00 30.40 2.71
2400 6470 1.135024 CCCCGCCAATCTTGTTCATTG 60.135 52.381 0.00 0.00 0.00 2.82
2401 6471 1.185315 CCCCGCCAATCTTGTTCATT 58.815 50.000 0.00 0.00 0.00 2.57
2402 6472 0.331278 TCCCCGCCAATCTTGTTCAT 59.669 50.000 0.00 0.00 0.00 2.57
2403 6473 0.322456 CTCCCCGCCAATCTTGTTCA 60.322 55.000 0.00 0.00 0.00 3.18
2404 6474 1.032114 CCTCCCCGCCAATCTTGTTC 61.032 60.000 0.00 0.00 0.00 3.18
2405 6475 1.000896 CCTCCCCGCCAATCTTGTT 60.001 57.895 0.00 0.00 0.00 2.83
2406 6476 1.789576 AACCTCCCCGCCAATCTTGT 61.790 55.000 0.00 0.00 0.00 3.16
2407 6477 1.000896 AACCTCCCCGCCAATCTTG 60.001 57.895 0.00 0.00 0.00 3.02
2408 6478 1.000896 CAACCTCCCCGCCAATCTT 60.001 57.895 0.00 0.00 0.00 2.40
2409 6479 1.281925 ATCAACCTCCCCGCCAATCT 61.282 55.000 0.00 0.00 0.00 2.40
2410 6480 1.103398 CATCAACCTCCCCGCCAATC 61.103 60.000 0.00 0.00 0.00 2.67
2411 6481 1.076777 CATCAACCTCCCCGCCAAT 60.077 57.895 0.00 0.00 0.00 3.16
2412 6482 2.354729 CATCAACCTCCCCGCCAA 59.645 61.111 0.00 0.00 0.00 4.52
2413 6483 3.727258 CCATCAACCTCCCCGCCA 61.727 66.667 0.00 0.00 0.00 5.69
2414 6484 3.728373 ACCATCAACCTCCCCGCC 61.728 66.667 0.00 0.00 0.00 6.13
2415 6485 2.270874 ATCACCATCAACCTCCCCGC 62.271 60.000 0.00 0.00 0.00 6.13
2416 6486 1.128200 TATCACCATCAACCTCCCCG 58.872 55.000 0.00 0.00 0.00 5.73
2417 6487 2.777692 TCTTATCACCATCAACCTCCCC 59.222 50.000 0.00 0.00 0.00 4.81
2418 6488 4.503714 TTCTTATCACCATCAACCTCCC 57.496 45.455 0.00 0.00 0.00 4.30
2419 6489 7.229506 CCTATTTTCTTATCACCATCAACCTCC 59.770 40.741 0.00 0.00 0.00 4.30
2420 6490 7.255277 GCCTATTTTCTTATCACCATCAACCTC 60.255 40.741 0.00 0.00 0.00 3.85
2426 6496 7.573968 AACTGCCTATTTTCTTATCACCATC 57.426 36.000 0.00 0.00 0.00 3.51
2427 6497 7.961326 AAACTGCCTATTTTCTTATCACCAT 57.039 32.000 0.00 0.00 0.00 3.55
2429 6499 7.484959 CGAAAAACTGCCTATTTTCTTATCACC 59.515 37.037 12.92 0.00 41.26 4.02
2475 6545 7.024340 ACTGTCAATGTCATGCTTATGATTC 57.976 36.000 0.00 0.00 32.61 2.52
2514 6584 5.324784 ACATGCTCTGTTAGATCGTAACA 57.675 39.130 13.56 13.56 32.90 2.41
2578 6648 6.291377 TCTCATGTTTCTTTCTGTTGTAGCT 58.709 36.000 0.00 0.00 0.00 3.32
2761 6831 2.072298 GACTGCTCGCTTCTGTTCATT 58.928 47.619 0.00 0.00 0.00 2.57
2789 6859 3.630312 GGCGATTAGATTTTTGGGTAGCA 59.370 43.478 0.00 0.00 0.00 3.49
2802 6872 0.979187 ACGGGAAAGGGGCGATTAGA 60.979 55.000 0.00 0.00 0.00 2.10
2905 6976 3.123620 CGTTCCTCTGCTGCTGCC 61.124 66.667 13.47 0.00 38.71 4.85
2951 7022 0.323087 ACCCTAACCGCCATGAAACC 60.323 55.000 0.00 0.00 0.00 3.27
3002 7074 0.904865 AGCCCATGTCTCTCCACGAA 60.905 55.000 0.00 0.00 0.00 3.85
3003 7075 1.305297 AGCCCATGTCTCTCCACGA 60.305 57.895 0.00 0.00 0.00 4.35
3052 7124 1.978712 GCCACGATCTGAGACGTCGA 61.979 60.000 11.92 1.58 40.76 4.20
3074 7146 1.614413 ACGGAGAGTCTTTGACAGGTC 59.386 52.381 0.00 0.00 34.60 3.85
3131 7203 4.161295 CGGGATTGAGCCGAGCCA 62.161 66.667 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.