Multiple sequence alignment - TraesCS6A01G185500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G185500 chr6A 100.000 6332 0 0 1 6332 217643628 217637297 0.000000e+00 11694.0
1 TraesCS6A01G185500 chr6D 97.249 1563 32 6 4772 6332 159344220 159342667 0.000000e+00 2638.0
2 TraesCS6A01G185500 chr6D 97.503 1442 31 3 1756 3196 159349906 159348469 0.000000e+00 2459.0
3 TraesCS6A01G185500 chr6D 97.793 1133 25 0 3192 4324 159345622 159344490 0.000000e+00 1954.0
4 TraesCS6A01G185500 chr6D 91.876 997 58 4 1 975 45623946 45624941 0.000000e+00 1371.0
5 TraesCS6A01G185500 chr6D 91.400 1000 62 9 1 979 45499953 45498957 0.000000e+00 1349.0
6 TraesCS6A01G185500 chr6D 93.267 802 18 8 972 1765 159350734 159349961 0.000000e+00 1149.0
7 TraesCS6A01G185500 chr6D 98.049 205 4 0 4567 4771 159344461 159344257 2.170000e-94 357.0
8 TraesCS6A01G185500 chr6D 92.050 239 17 2 744 980 452403579 452403817 1.020000e-87 335.0
9 TraesCS6A01G185500 chr6D 97.531 81 2 0 4425 4505 277309003 277308923 8.560000e-29 139.0
10 TraesCS6A01G185500 chr6D 96.296 81 3 0 4425 4505 283167361 283167281 3.980000e-27 134.0
11 TraesCS6A01G185500 chr6B 95.460 1564 60 11 4771 6332 289688982 289687428 0.000000e+00 2484.0
12 TraesCS6A01G185500 chr6B 94.828 1102 35 7 1754 2838 289696164 289695068 0.000000e+00 1700.0
13 TraesCS6A01G185500 chr6B 95.802 810 17 6 2837 3644 289694987 289694193 0.000000e+00 1291.0
14 TraesCS6A01G185500 chr6B 95.729 796 26 4 972 1760 289697017 289696223 0.000000e+00 1275.0
15 TraesCS6A01G185500 chr6B 97.576 495 10 2 3640 4133 289690134 289689641 0.000000e+00 846.0
16 TraesCS6A01G185500 chr6B 92.130 216 6 1 4567 4771 289689233 289689018 1.730000e-75 294.0
17 TraesCS6A01G185500 chr6B 90.686 204 7 9 4126 4329 289689455 289689264 1.750000e-65 261.0
18 TraesCS6A01G185500 chr6B 98.958 96 1 0 4330 4425 626865259 626865354 8.440000e-39 172.0
19 TraesCS6A01G185500 chr6B 96.875 96 3 0 4330 4425 388173330 388173235 1.830000e-35 161.0
20 TraesCS6A01G185500 chr1B 87.297 1850 171 41 1774 3582 61527826 61526000 0.000000e+00 2056.0
21 TraesCS6A01G185500 chr1B 84.010 813 102 12 4772 5567 61524897 61524096 0.000000e+00 756.0
22 TraesCS6A01G185500 chr1B 83.912 777 71 22 3577 4329 61525922 61525176 0.000000e+00 693.0
23 TraesCS6A01G185500 chr1B 87.738 473 43 10 513 973 601110903 601110434 7.220000e-149 538.0
24 TraesCS6A01G185500 chr1B 80.101 789 91 37 1006 1760 61528659 61527903 1.560000e-145 527.0
25 TraesCS6A01G185500 chr1B 100.000 96 0 0 4330 4425 638747766 638747671 1.810000e-40 178.0
26 TraesCS6A01G185500 chr1B 98.958 96 1 0 4330 4425 436309465 436309560 8.440000e-39 172.0
27 TraesCS6A01G185500 chr1B 100.000 81 0 0 4425 4505 225199918 225199838 3.950000e-32 150.0
28 TraesCS6A01G185500 chr1D 87.371 1845 165 39 1774 3582 41510161 41508349 0.000000e+00 2054.0
29 TraesCS6A01G185500 chr1D 83.825 847 105 15 4776 5602 41507172 41506338 0.000000e+00 776.0
30 TraesCS6A01G185500 chr1D 83.748 683 59 24 3671 4329 41508093 41507439 3.270000e-167 599.0
31 TraesCS6A01G185500 chr1D 80.488 615 74 24 1006 1600 41510951 41510363 4.540000e-116 429.0
32 TraesCS6A01G185500 chr1D 100.000 81 0 0 4425 4505 493803978 493803898 3.950000e-32 150.0
33 TraesCS6A01G185500 chr1A 89.481 1388 111 25 2037 3396 41361081 41359701 0.000000e+00 1722.0
34 TraesCS6A01G185500 chr1A 85.586 888 94 14 3461 4329 41359697 41358825 0.000000e+00 900.0
35 TraesCS6A01G185500 chr1A 82.845 921 118 26 4767 5659 41358126 41357218 0.000000e+00 789.0
36 TraesCS6A01G185500 chr1A 81.088 772 93 30 1006 1752 41362203 41361460 9.210000e-158 568.0
37 TraesCS6A01G185500 chr1A 97.917 96 2 0 4330 4425 94624650 94624745 3.930000e-37 167.0
38 TraesCS6A01G185500 chr1A 100.000 81 0 0 4425 4505 94546719 94546799 3.950000e-32 150.0
39 TraesCS6A01G185500 chr1A 100.000 67 0 0 4504 4570 22570053 22570119 2.400000e-24 124.0
40 TraesCS6A01G185500 chr1A 100.000 67 0 0 4504 4570 498684912 498684978 2.400000e-24 124.0
41 TraesCS6A01G185500 chr3A 92.089 986 72 4 1 980 119380461 119379476 0.000000e+00 1384.0
42 TraesCS6A01G185500 chr3A 98.507 67 1 0 4504 4570 725803070 725803004 1.120000e-22 119.0
43 TraesCS6A01G185500 chr4A 91.692 975 76 5 1 970 477305618 477306592 0.000000e+00 1347.0
44 TraesCS6A01G185500 chr4A 89.652 976 92 6 1 973 161283254 161284223 0.000000e+00 1234.0
45 TraesCS6A01G185500 chr2D 91.300 1000 65 8 1 979 567014617 567013619 0.000000e+00 1345.0
46 TraesCS6A01G185500 chr2D 91.274 997 61 7 4 977 368974462 368973469 0.000000e+00 1336.0
47 TraesCS6A01G185500 chr2D 90.229 1003 68 12 1 983 78076989 78075997 0.000000e+00 1282.0
48 TraesCS6A01G185500 chr4D 90.873 997 67 10 1 975 80139208 80138214 0.000000e+00 1315.0
49 TraesCS6A01G185500 chr4D 97.917 96 2 0 4330 4425 123680310 123680405 3.930000e-37 167.0
50 TraesCS6A01G185500 chr4D 100.000 81 0 0 4425 4505 123598815 123598895 3.950000e-32 150.0
51 TraesCS6A01G185500 chr4D 98.765 81 1 0 4425 4505 135056704 135056624 1.840000e-30 145.0
52 TraesCS6A01G185500 chr4D 92.708 96 7 0 4330 4425 167117516 167117611 8.560000e-29 139.0
53 TraesCS6A01G185500 chr5D 90.290 999 63 7 1 975 503737056 503736068 0.000000e+00 1277.0
54 TraesCS6A01G185500 chr5D 88.367 980 100 13 1 973 104144549 104145521 0.000000e+00 1166.0
55 TraesCS6A01G185500 chr5D 100.000 81 0 0 4425 4505 508554085 508554165 3.950000e-32 150.0
56 TraesCS6A01G185500 chr5D 98.438 64 1 0 4362 4425 357569564 357569627 5.190000e-21 113.0
57 TraesCS6A01G185500 chr7B 100.000 96 0 0 4330 4425 585174100 585174005 1.810000e-40 178.0
58 TraesCS6A01G185500 chr7B 100.000 67 0 0 4504 4570 716832248 716832314 2.400000e-24 124.0
59 TraesCS6A01G185500 chr7B 100.000 67 0 0 4504 4570 742995763 742995697 2.400000e-24 124.0
60 TraesCS6A01G185500 chr2B 100.000 96 0 0 4330 4425 357759283 357759188 1.810000e-40 178.0
61 TraesCS6A01G185500 chr2B 100.000 96 0 0 4330 4425 500716362 500716457 1.810000e-40 178.0
62 TraesCS6A01G185500 chrUn 98.958 96 1 0 4330 4425 233533554 233533459 8.440000e-39 172.0
63 TraesCS6A01G185500 chrUn 100.000 81 0 0 4425 4505 86495531 86495611 3.950000e-32 150.0
64 TraesCS6A01G185500 chrUn 100.000 81 0 0 4425 4505 171027163 171027083 3.950000e-32 150.0
65 TraesCS6A01G185500 chrUn 98.765 81 1 0 4425 4505 45128336 45128416 1.840000e-30 145.0
66 TraesCS6A01G185500 chrUn 98.765 81 1 0 4425 4505 186173940 186173860 1.840000e-30 145.0
67 TraesCS6A01G185500 chrUn 98.765 81 1 0 4425 4505 355125612 355125692 1.840000e-30 145.0
68 TraesCS6A01G185500 chrUn 98.765 81 1 0 4425 4505 432800859 432800939 1.840000e-30 145.0
69 TraesCS6A01G185500 chrUn 98.765 81 1 0 4425 4505 439745292 439745212 1.840000e-30 145.0
70 TraesCS6A01G185500 chrUn 98.649 74 1 0 4425 4498 93198793 93198866 1.430000e-26 132.0
71 TraesCS6A01G185500 chrUn 96.053 76 3 0 4495 4570 186202094 186202169 2.400000e-24 124.0
72 TraesCS6A01G185500 chrUn 100.000 29 0 0 4425 4453 22854752 22854780 3.000000e-03 54.7
73 TraesCS6A01G185500 chrUn 100.000 28 0 0 4543 4570 186210685 186210658 1.100000e-02 52.8
74 TraesCS6A01G185500 chr7D 98.958 96 1 0 4330 4425 382106614 382106519 8.440000e-39 172.0
75 TraesCS6A01G185500 chr7D 97.917 96 2 0 4330 4425 626733498 626733403 3.930000e-37 167.0
76 TraesCS6A01G185500 chr7D 97.015 67 2 0 4504 4570 208641767 208641701 5.190000e-21 113.0
77 TraesCS6A01G185500 chr7A 98.958 96 1 0 4330 4425 4936201 4936106 8.440000e-39 172.0
78 TraesCS6A01G185500 chr7A 98.958 96 1 0 4330 4425 60104757 60104662 8.440000e-39 172.0
79 TraesCS6A01G185500 chr7A 100.000 67 0 0 4504 4570 60285613 60285547 2.400000e-24 124.0
80 TraesCS6A01G185500 chr3D 95.833 96 4 0 4330 4425 145415087 145415182 8.500000e-34 156.0
81 TraesCS6A01G185500 chr5B 100.000 81 0 0 4425 4505 130547439 130547359 3.950000e-32 150.0
82 TraesCS6A01G185500 chr5B 100.000 81 0 0 4425 4505 130558597 130558677 3.950000e-32 150.0
83 TraesCS6A01G185500 chr5B 100.000 67 0 0 4504 4570 392081538 392081472 2.400000e-24 124.0
84 TraesCS6A01G185500 chr5B 100.000 67 0 0 4504 4570 392121577 392121511 2.400000e-24 124.0
85 TraesCS6A01G185500 chr5B 100.000 34 0 0 4504 4537 337923568 337923601 5.300000e-06 63.9
86 TraesCS6A01G185500 chr4B 100.000 67 0 0 4504 4570 209305979 209305913 2.400000e-24 124.0
87 TraesCS6A01G185500 chr4B 98.438 64 0 1 4507 4570 163791456 163791518 1.870000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G185500 chr6A 217637297 217643628 6331 True 11694.00 11694 100.0000 1 6332 1 chr6A.!!$R1 6331
1 TraesCS6A01G185500 chr6D 159342667 159350734 8067 True 1711.40 2638 96.7722 972 6332 5 chr6D.!!$R4 5360
2 TraesCS6A01G185500 chr6D 45623946 45624941 995 False 1371.00 1371 91.8760 1 975 1 chr6D.!!$F1 974
3 TraesCS6A01G185500 chr6D 45498957 45499953 996 True 1349.00 1349 91.4000 1 979 1 chr6D.!!$R1 978
4 TraesCS6A01G185500 chr6B 289694193 289697017 2824 True 1422.00 1700 95.4530 972 3644 3 chr6B.!!$R3 2672
5 TraesCS6A01G185500 chr6B 289687428 289690134 2706 True 971.25 2484 93.9630 3640 6332 4 chr6B.!!$R2 2692
6 TraesCS6A01G185500 chr1B 61524096 61528659 4563 True 1008.00 2056 83.8300 1006 5567 4 chr1B.!!$R4 4561
7 TraesCS6A01G185500 chr1D 41506338 41510951 4613 True 964.50 2054 83.8580 1006 5602 4 chr1D.!!$R2 4596
8 TraesCS6A01G185500 chr1A 41357218 41362203 4985 True 994.75 1722 84.7500 1006 5659 4 chr1A.!!$R1 4653
9 TraesCS6A01G185500 chr3A 119379476 119380461 985 True 1384.00 1384 92.0890 1 980 1 chr3A.!!$R1 979
10 TraesCS6A01G185500 chr4A 477305618 477306592 974 False 1347.00 1347 91.6920 1 970 1 chr4A.!!$F2 969
11 TraesCS6A01G185500 chr4A 161283254 161284223 969 False 1234.00 1234 89.6520 1 973 1 chr4A.!!$F1 972
12 TraesCS6A01G185500 chr2D 567013619 567014617 998 True 1345.00 1345 91.3000 1 979 1 chr2D.!!$R3 978
13 TraesCS6A01G185500 chr2D 368973469 368974462 993 True 1336.00 1336 91.2740 4 977 1 chr2D.!!$R2 973
14 TraesCS6A01G185500 chr2D 78075997 78076989 992 True 1282.00 1282 90.2290 1 983 1 chr2D.!!$R1 982
15 TraesCS6A01G185500 chr4D 80138214 80139208 994 True 1315.00 1315 90.8730 1 975 1 chr4D.!!$R1 974
16 TraesCS6A01G185500 chr5D 503736068 503737056 988 True 1277.00 1277 90.2900 1 975 1 chr5D.!!$R1 974
17 TraesCS6A01G185500 chr5D 104144549 104145521 972 False 1166.00 1166 88.3670 1 973 1 chr5D.!!$F1 972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 90 0.326264 GGGTCATGAGCAACCACTCT 59.674 55.000 25.18 0.0 37.28 3.24 F
1646 1744 0.744414 CTAATGGTGACCGCACTGGG 60.744 60.000 0.00 0.0 44.52 4.45 F
1760 1862 1.133668 GCAGGGGTGGCTCTATCATTT 60.134 52.381 0.00 0.0 0.00 2.32 F
3483 6676 2.230660 GTTTTGGGCACAGTTAGCTCT 58.769 47.619 0.00 0.0 32.41 4.09 F
4362 7952 0.250814 AGCTCCCCGATAGACGTAGG 60.251 60.000 0.00 0.0 40.78 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1863 2.945456 AGTATCACATACCAGCCGAGA 58.055 47.619 0.00 0.00 36.40 4.04 R
3026 3359 4.021544 TGGAACTTCAAAAATTCATCCCCG 60.022 41.667 0.00 0.00 0.00 5.73 R
3620 6897 6.485313 GGTTAGCATACCATATAGCACAAACA 59.515 38.462 2.63 0.00 38.12 2.83 R
4466 8056 0.177141 TCGTTCCCATGGTTCGATCC 59.823 55.000 11.73 5.52 0.00 3.36 R
5911 10009 0.733909 GGCATCAAGGCAAAAGTCGC 60.734 55.000 0.00 0.00 43.51 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 2.014128 CCGCGGTTCATTTCTGGTAAT 58.986 47.619 19.50 0.00 0.00 1.89
88 90 0.326264 GGGTCATGAGCAACCACTCT 59.674 55.000 25.18 0.00 37.28 3.24
91 93 2.289945 GGTCATGAGCAACCACTCTCTT 60.290 50.000 19.79 0.00 37.58 2.85
259 261 1.000019 CTGACCCCCTGTACCGAGA 60.000 63.158 0.00 0.00 0.00 4.04
269 271 2.125673 TACCGAGAAAGCTGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
304 306 2.203337 GACCAGTGCAGCCACCAA 60.203 61.111 0.00 0.00 43.09 3.67
370 372 5.008712 GGAAGTGATGGAAGAAAAACTCGTT 59.991 40.000 0.00 0.00 0.00 3.85
395 397 2.108250 ACTGTCCATACCTTTGTTGGCT 59.892 45.455 0.00 0.00 0.00 4.75
423 425 2.030490 AACACCTTGCGGTCGTGGTA 62.030 55.000 0.00 0.00 43.24 3.25
424 426 1.301087 CACCTTGCGGTCGTGGTAA 60.301 57.895 0.00 0.00 43.24 2.85
493 495 2.216148 GCTACTGGCCACTCTGGAT 58.784 57.895 0.00 0.00 40.96 3.41
557 559 3.077556 CGTGCCCCCTCTGCTACT 61.078 66.667 0.00 0.00 0.00 2.57
574 576 1.371267 CTGGCAAAGACGACGACGA 60.371 57.895 15.32 0.00 42.66 4.20
629 632 3.750373 AAAGCGCAGACGTGGTGGT 62.750 57.895 11.47 0.00 42.83 4.16
632 635 4.602259 CGCAGACGTGGTGGTGGT 62.602 66.667 0.00 0.00 33.53 4.16
789 843 3.284449 GGGACAAAGCCGTGCGTT 61.284 61.111 0.00 0.00 0.00 4.84
891 948 3.362986 CGGACATTTGTCTGTTTGAGTCG 60.363 47.826 10.73 0.00 44.33 4.18
912 969 2.696759 GCGTTGGGCCGTGCTATTT 61.697 57.895 0.00 0.00 34.80 1.40
996 1055 2.059756 TCTTCCCCAGATTCCCAACT 57.940 50.000 0.00 0.00 0.00 3.16
1191 1268 1.306642 CCGTGCTCGTCTGTACCTCT 61.307 60.000 7.47 0.00 35.01 3.69
1394 1488 4.634184 AGTACGCACGATTGATAGAAGT 57.366 40.909 0.00 0.00 0.00 3.01
1646 1744 0.744414 CTAATGGTGACCGCACTGGG 60.744 60.000 0.00 0.00 44.52 4.45
1681 1781 4.592485 TGAAGCTCTATCGAATTCTCCC 57.408 45.455 3.52 0.00 0.00 4.30
1689 1789 2.840640 TCGAATTCTCCCTCCCTGTA 57.159 50.000 3.52 0.00 0.00 2.74
1760 1862 1.133668 GCAGGGGTGGCTCTATCATTT 60.134 52.381 0.00 0.00 0.00 2.32
1761 1863 2.687914 GCAGGGGTGGCTCTATCATTTT 60.688 50.000 0.00 0.00 0.00 1.82
1762 1864 3.217626 CAGGGGTGGCTCTATCATTTTC 58.782 50.000 0.00 0.00 0.00 2.29
1775 1943 3.627395 TCATTTTCTCGGCTGGTATGT 57.373 42.857 0.00 0.00 0.00 2.29
1776 1944 3.270027 TCATTTTCTCGGCTGGTATGTG 58.730 45.455 0.00 0.00 0.00 3.21
1777 1945 3.055458 TCATTTTCTCGGCTGGTATGTGA 60.055 43.478 0.00 0.00 0.00 3.58
1780 1948 3.728076 TTCTCGGCTGGTATGTGATAC 57.272 47.619 0.00 0.00 35.00 2.24
2014 2186 7.148069 GGAAGTTTTGTTCCCATCTACCAATAG 60.148 40.741 0.00 0.00 40.31 1.73
2275 2494 7.510549 TTTTTCCAGGACTGTTAAGAGATTG 57.489 36.000 6.63 1.87 0.00 2.67
2590 2811 4.127171 CCATTGTAAATGACCCTCTACGG 58.873 47.826 1.54 0.00 0.00 4.02
2821 3065 6.875726 GTCCACTCATAATGCTATGCAATCTA 59.124 38.462 0.00 0.00 43.62 1.98
3026 3359 2.710377 TTGTACATGACTGGACATGGC 58.290 47.619 14.90 0.00 45.68 4.40
3483 6676 2.230660 GTTTTGGGCACAGTTAGCTCT 58.769 47.619 0.00 0.00 32.41 4.09
3631 6912 3.067180 GCTGCATATGGTGTTTGTGCTAT 59.933 43.478 4.56 0.00 36.78 2.97
3805 7170 2.134789 ATCCACAGCTTCAATCACCC 57.865 50.000 0.00 0.00 0.00 4.61
4157 7720 0.320771 AAGGTGCTGGTCTTACTGCG 60.321 55.000 0.00 0.00 38.04 5.18
4335 7925 9.946165 CTATGTAATACGATGTGAAACTAGTGA 57.054 33.333 0.00 0.00 38.04 3.41
4337 7927 7.255569 TGTAATACGATGTGAAACTAGTGAGG 58.744 38.462 0.00 0.00 38.04 3.86
4338 7928 6.525578 AATACGATGTGAAACTAGTGAGGA 57.474 37.500 0.00 0.00 38.04 3.71
4339 7929 6.716934 ATACGATGTGAAACTAGTGAGGAT 57.283 37.500 0.00 0.00 38.04 3.24
4340 7930 5.407407 ACGATGTGAAACTAGTGAGGATT 57.593 39.130 0.00 0.00 38.04 3.01
4342 7932 5.639506 ACGATGTGAAACTAGTGAGGATTTG 59.360 40.000 0.00 0.00 38.04 2.32
4344 7934 6.035435 CGATGTGAAACTAGTGAGGATTTGAG 59.965 42.308 0.00 0.00 38.04 3.02
4345 7935 4.997395 TGTGAAACTAGTGAGGATTTGAGC 59.003 41.667 0.00 0.00 38.04 4.26
4348 7938 4.479786 AACTAGTGAGGATTTGAGCTCC 57.520 45.455 12.15 0.00 0.00 4.70
4349 7939 2.769095 ACTAGTGAGGATTTGAGCTCCC 59.231 50.000 12.15 4.82 32.89 4.30
4350 7940 0.915364 AGTGAGGATTTGAGCTCCCC 59.085 55.000 12.15 7.32 32.89 4.81
4352 7942 0.617535 TGAGGATTTGAGCTCCCCGA 60.618 55.000 12.15 0.00 32.89 5.14
4354 7944 1.971357 GAGGATTTGAGCTCCCCGATA 59.029 52.381 12.15 0.00 32.89 2.92
4355 7945 1.974236 AGGATTTGAGCTCCCCGATAG 59.026 52.381 12.15 0.00 32.89 2.08
4356 7946 1.971357 GGATTTGAGCTCCCCGATAGA 59.029 52.381 12.15 0.00 39.76 1.98
4357 7947 2.289133 GGATTTGAGCTCCCCGATAGAC 60.289 54.545 12.15 0.00 39.76 2.59
4359 7949 0.395311 TTGAGCTCCCCGATAGACGT 60.395 55.000 12.15 0.00 40.78 4.34
4360 7950 0.471191 TGAGCTCCCCGATAGACGTA 59.529 55.000 12.15 0.00 40.78 3.57
4361 7951 1.158434 GAGCTCCCCGATAGACGTAG 58.842 60.000 0.87 0.00 40.78 3.51
4362 7952 0.250814 AGCTCCCCGATAGACGTAGG 60.251 60.000 0.00 0.00 40.78 3.18
4363 7953 1.242665 GCTCCCCGATAGACGTAGGG 61.243 65.000 0.00 0.00 42.24 3.53
4364 7954 1.228367 TCCCCGATAGACGTAGGGC 60.228 63.158 0.00 0.00 41.21 5.19
4365 7955 2.273912 CCCCGATAGACGTAGGGCC 61.274 68.421 0.00 0.00 42.47 5.80
4366 7956 2.273912 CCCGATAGACGTAGGGCCC 61.274 68.421 16.46 16.46 40.78 5.80
4367 7957 2.623915 CCGATAGACGTAGGGCCCG 61.624 68.421 18.44 7.33 40.78 6.13
4368 7958 2.649614 GATAGACGTAGGGCCCGC 59.350 66.667 18.44 13.03 0.00 6.13
4369 7959 1.902432 GATAGACGTAGGGCCCGCT 60.902 63.158 18.44 12.43 0.00 5.52
4370 7960 1.864725 GATAGACGTAGGGCCCGCTC 61.865 65.000 18.44 9.54 0.00 5.03
4375 7965 3.909285 GTAGGGCCCGCTCGGTAC 61.909 72.222 18.44 8.64 0.00 3.34
4392 7982 2.676342 GGTACGCTGTCATTGTTTAGGG 59.324 50.000 0.00 0.00 0.00 3.53
4393 7983 1.821216 ACGCTGTCATTGTTTAGGGG 58.179 50.000 0.00 0.00 0.00 4.79
4394 7984 1.094785 CGCTGTCATTGTTTAGGGGG 58.905 55.000 0.00 0.00 0.00 5.40
4413 8003 5.048846 GGGGGTTCTTAATTCTAGCATGA 57.951 43.478 0.00 0.00 0.00 3.07
4414 8004 5.445964 GGGGGTTCTTAATTCTAGCATGAA 58.554 41.667 0.00 0.00 0.00 2.57
4415 8005 5.891551 GGGGGTTCTTAATTCTAGCATGAAA 59.108 40.000 0.00 0.00 0.00 2.69
4416 8006 6.039829 GGGGGTTCTTAATTCTAGCATGAAAG 59.960 42.308 0.00 0.00 0.00 2.62
4417 8007 6.603599 GGGGTTCTTAATTCTAGCATGAAAGT 59.396 38.462 0.00 0.00 0.00 2.66
4418 8008 7.201741 GGGGTTCTTAATTCTAGCATGAAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
4419 8009 7.201741 GGGTTCTTAATTCTAGCATGAAAGTCC 60.202 40.741 0.00 0.00 0.00 3.85
4420 8010 7.402640 GTTCTTAATTCTAGCATGAAAGTCCG 58.597 38.462 0.00 0.00 0.00 4.79
4421 8011 6.873997 TCTTAATTCTAGCATGAAAGTCCGA 58.126 36.000 0.00 0.00 0.00 4.55
4422 8012 6.980978 TCTTAATTCTAGCATGAAAGTCCGAG 59.019 38.462 0.00 0.00 0.00 4.63
4423 8013 4.744795 ATTCTAGCATGAAAGTCCGAGT 57.255 40.909 0.00 0.00 0.00 4.18
4424 8014 4.537135 TTCTAGCATGAAAGTCCGAGTT 57.463 40.909 0.00 0.00 0.00 3.01
4425 8015 5.654603 TTCTAGCATGAAAGTCCGAGTTA 57.345 39.130 0.00 0.00 0.00 2.24
4426 8016 5.654603 TCTAGCATGAAAGTCCGAGTTAA 57.345 39.130 0.00 0.00 0.00 2.01
4427 8017 6.032956 TCTAGCATGAAAGTCCGAGTTAAA 57.967 37.500 0.00 0.00 0.00 1.52
4428 8018 6.460781 TCTAGCATGAAAGTCCGAGTTAAAA 58.539 36.000 0.00 0.00 0.00 1.52
4429 8019 5.613358 AGCATGAAAGTCCGAGTTAAAAG 57.387 39.130 0.00 0.00 0.00 2.27
4430 8020 4.083271 AGCATGAAAGTCCGAGTTAAAAGC 60.083 41.667 0.00 0.00 0.00 3.51
4431 8021 4.394795 CATGAAAGTCCGAGTTAAAAGCG 58.605 43.478 0.00 0.00 0.00 4.68
4432 8022 3.719924 TGAAAGTCCGAGTTAAAAGCGA 58.280 40.909 0.00 0.00 0.00 4.93
4433 8023 4.312443 TGAAAGTCCGAGTTAAAAGCGAT 58.688 39.130 0.00 0.00 0.00 4.58
4434 8024 4.387862 TGAAAGTCCGAGTTAAAAGCGATC 59.612 41.667 0.00 0.00 0.00 3.69
4435 8025 3.587797 AGTCCGAGTTAAAAGCGATCA 57.412 42.857 0.00 0.00 0.00 2.92
4436 8026 4.124851 AGTCCGAGTTAAAAGCGATCAT 57.875 40.909 0.00 0.00 0.00 2.45
4437 8027 4.113354 AGTCCGAGTTAAAAGCGATCATC 58.887 43.478 0.00 0.00 0.00 2.92
4438 8028 3.863424 GTCCGAGTTAAAAGCGATCATCA 59.137 43.478 0.00 0.00 0.00 3.07
4439 8029 4.508124 GTCCGAGTTAAAAGCGATCATCAT 59.492 41.667 0.00 0.00 0.00 2.45
4440 8030 5.006746 GTCCGAGTTAAAAGCGATCATCATT 59.993 40.000 0.00 0.00 0.00 2.57
4441 8031 5.234329 TCCGAGTTAAAAGCGATCATCATTC 59.766 40.000 0.00 0.00 0.00 2.67
4442 8032 5.126423 CGAGTTAAAAGCGATCATCATTCG 58.874 41.667 0.00 0.00 39.55 3.34
4443 8033 5.051708 CGAGTTAAAAGCGATCATCATTCGA 60.052 40.000 0.00 0.00 38.88 3.71
4444 8034 6.507929 CGAGTTAAAAGCGATCATCATTCGAA 60.508 38.462 0.00 0.00 38.88 3.71
4445 8035 6.478588 AGTTAAAAGCGATCATCATTCGAAC 58.521 36.000 0.00 0.00 38.88 3.95
4446 8036 4.944962 AAAAGCGATCATCATTCGAACA 57.055 36.364 0.00 0.00 38.88 3.18
4447 8037 3.933155 AAGCGATCATCATTCGAACAC 57.067 42.857 0.00 0.00 38.88 3.32
4448 8038 1.854743 AGCGATCATCATTCGAACACG 59.145 47.619 0.00 0.33 38.88 4.49
4449 8039 1.654775 GCGATCATCATTCGAACACGC 60.655 52.381 0.00 6.80 38.88 5.34
4450 8040 1.071239 CGATCATCATTCGAACACGCC 60.071 52.381 0.00 0.00 38.88 5.68
4451 8041 0.930310 ATCATCATTCGAACACGCCG 59.070 50.000 0.00 0.00 0.00 6.46
4452 8042 1.296867 CATCATTCGAACACGCCGC 60.297 57.895 0.00 0.00 0.00 6.53
4453 8043 2.798501 ATCATTCGAACACGCCGCG 61.799 57.895 12.14 12.14 0.00 6.46
4454 8044 3.773630 CATTCGAACACGCCGCGT 61.774 61.111 13.85 13.85 42.36 6.01
4455 8045 3.039588 ATTCGAACACGCCGCGTT 61.040 55.556 17.45 1.91 38.32 4.84
4456 8046 2.600475 ATTCGAACACGCCGCGTTT 61.600 52.632 17.45 13.74 38.32 3.60
4457 8047 2.108344 ATTCGAACACGCCGCGTTTT 62.108 50.000 17.45 17.03 38.32 2.43
4458 8048 1.485838 TTCGAACACGCCGCGTTTTA 61.486 50.000 17.45 0.00 38.32 1.52
4459 8049 1.785533 CGAACACGCCGCGTTTTAC 60.786 57.895 17.45 9.47 38.32 2.01
4460 8050 1.566077 GAACACGCCGCGTTTTACT 59.434 52.632 17.45 0.00 38.32 2.24
4461 8051 0.720173 GAACACGCCGCGTTTTACTG 60.720 55.000 17.45 6.47 38.32 2.74
4462 8052 2.108344 AACACGCCGCGTTTTACTGG 62.108 55.000 17.45 5.60 38.32 4.00
4463 8053 3.045492 ACGCCGCGTTTTACTGGG 61.045 61.111 13.85 0.00 36.35 4.45
4464 8054 2.739287 CGCCGCGTTTTACTGGGA 60.739 61.111 4.92 0.00 0.00 4.37
4465 8055 2.319096 CGCCGCGTTTTACTGGGAA 61.319 57.895 4.92 0.00 0.00 3.97
4466 8056 1.500396 GCCGCGTTTTACTGGGAAG 59.500 57.895 4.92 0.00 0.00 3.46
4467 8057 1.918868 GCCGCGTTTTACTGGGAAGG 61.919 60.000 4.92 0.00 0.00 3.46
4468 8058 0.320946 CCGCGTTTTACTGGGAAGGA 60.321 55.000 4.92 0.00 0.00 3.36
4469 8059 1.677820 CCGCGTTTTACTGGGAAGGAT 60.678 52.381 4.92 0.00 0.00 3.24
4470 8060 1.664151 CGCGTTTTACTGGGAAGGATC 59.336 52.381 0.00 0.00 0.00 3.36
4471 8061 1.664151 GCGTTTTACTGGGAAGGATCG 59.336 52.381 0.00 0.00 0.00 3.69
4472 8062 2.675889 GCGTTTTACTGGGAAGGATCGA 60.676 50.000 0.00 0.00 0.00 3.59
4473 8063 3.592059 CGTTTTACTGGGAAGGATCGAA 58.408 45.455 0.00 0.00 0.00 3.71
4474 8064 3.370061 CGTTTTACTGGGAAGGATCGAAC 59.630 47.826 0.00 0.00 0.00 3.95
4475 8065 3.622166 TTTACTGGGAAGGATCGAACC 57.378 47.619 2.97 2.97 0.00 3.62
4476 8066 2.241281 TACTGGGAAGGATCGAACCA 57.759 50.000 14.80 3.63 0.00 3.67
4477 8067 1.584724 ACTGGGAAGGATCGAACCAT 58.415 50.000 14.80 0.92 0.00 3.55
4478 8068 1.210478 ACTGGGAAGGATCGAACCATG 59.790 52.381 14.80 0.10 0.00 3.66
4479 8069 0.546122 TGGGAAGGATCGAACCATGG 59.454 55.000 14.80 11.19 0.00 3.66
4480 8070 0.179018 GGGAAGGATCGAACCATGGG 60.179 60.000 18.09 0.00 0.00 4.00
4481 8071 0.837272 GGAAGGATCGAACCATGGGA 59.163 55.000 18.09 3.91 0.00 4.37
4482 8072 1.211949 GGAAGGATCGAACCATGGGAA 59.788 52.381 18.09 0.00 0.00 3.97
4483 8073 2.289565 GAAGGATCGAACCATGGGAAC 58.710 52.381 18.09 5.87 0.00 3.62
4484 8074 0.178068 AGGATCGAACCATGGGAACG 59.822 55.000 18.09 17.52 0.00 3.95
4485 8075 0.177141 GGATCGAACCATGGGAACGA 59.823 55.000 24.14 24.14 37.84 3.85
4486 8076 1.406341 GGATCGAACCATGGGAACGAA 60.406 52.381 25.12 14.10 37.35 3.85
4487 8077 2.561569 GATCGAACCATGGGAACGAAT 58.438 47.619 25.12 16.93 37.35 3.34
4488 8078 1.732941 TCGAACCATGGGAACGAATG 58.267 50.000 18.09 0.00 33.47 2.67
4489 8079 1.276705 TCGAACCATGGGAACGAATGA 59.723 47.619 18.09 0.00 33.47 2.57
4490 8080 2.080693 CGAACCATGGGAACGAATGAA 58.919 47.619 18.09 0.00 0.00 2.57
4491 8081 2.159572 CGAACCATGGGAACGAATGAAC 60.160 50.000 18.09 0.00 0.00 3.18
4492 8082 2.577606 ACCATGGGAACGAATGAACA 57.422 45.000 18.09 0.00 0.00 3.18
4493 8083 2.436417 ACCATGGGAACGAATGAACAG 58.564 47.619 18.09 0.00 0.00 3.16
4494 8084 1.745087 CCATGGGAACGAATGAACAGG 59.255 52.381 2.85 0.00 0.00 4.00
4495 8085 1.745087 CATGGGAACGAATGAACAGGG 59.255 52.381 0.00 0.00 0.00 4.45
4496 8086 0.608035 TGGGAACGAATGAACAGGGC 60.608 55.000 0.00 0.00 0.00 5.19
4497 8087 0.322546 GGGAACGAATGAACAGGGCT 60.323 55.000 0.00 0.00 0.00 5.19
4498 8088 1.065709 GGGAACGAATGAACAGGGCTA 60.066 52.381 0.00 0.00 0.00 3.93
4499 8089 2.421529 GGGAACGAATGAACAGGGCTAT 60.422 50.000 0.00 0.00 0.00 2.97
4500 8090 2.872858 GGAACGAATGAACAGGGCTATC 59.127 50.000 0.00 0.00 0.00 2.08
4501 8091 3.531538 GAACGAATGAACAGGGCTATCA 58.468 45.455 0.00 0.00 0.00 2.15
4502 8092 2.906354 ACGAATGAACAGGGCTATCAC 58.094 47.619 0.00 0.00 0.00 3.06
4503 8093 2.213499 CGAATGAACAGGGCTATCACC 58.787 52.381 0.00 0.00 0.00 4.02
4504 8094 2.158900 CGAATGAACAGGGCTATCACCT 60.159 50.000 0.00 0.00 39.43 4.00
4505 8095 3.471680 GAATGAACAGGGCTATCACCTC 58.528 50.000 0.00 0.00 35.78 3.85
4506 8096 1.204146 TGAACAGGGCTATCACCTCC 58.796 55.000 0.00 0.00 35.78 4.30
4507 8097 1.204146 GAACAGGGCTATCACCTCCA 58.796 55.000 0.00 0.00 35.78 3.86
4508 8098 1.559682 GAACAGGGCTATCACCTCCAA 59.440 52.381 0.00 0.00 35.78 3.53
4509 8099 1.898863 ACAGGGCTATCACCTCCAAT 58.101 50.000 0.00 0.00 35.78 3.16
4510 8100 1.492176 ACAGGGCTATCACCTCCAATG 59.508 52.381 0.00 0.00 35.78 2.82
4511 8101 1.143813 AGGGCTATCACCTCCAATGG 58.856 55.000 0.00 0.00 31.01 3.16
4512 8102 0.538287 GGGCTATCACCTCCAATGGC 60.538 60.000 0.00 0.00 0.00 4.40
4513 8103 0.183492 GGCTATCACCTCCAATGGCA 59.817 55.000 0.00 0.00 31.60 4.92
4514 8104 1.202976 GGCTATCACCTCCAATGGCAT 60.203 52.381 0.00 0.00 31.60 4.40
4515 8105 2.590821 GCTATCACCTCCAATGGCATT 58.409 47.619 6.96 6.96 30.50 3.56
4516 8106 2.961062 GCTATCACCTCCAATGGCATTT 59.039 45.455 10.65 0.00 30.50 2.32
4517 8107 3.385755 GCTATCACCTCCAATGGCATTTT 59.614 43.478 10.65 0.00 30.50 1.82
4518 8108 4.500375 GCTATCACCTCCAATGGCATTTTC 60.500 45.833 10.65 0.00 30.50 2.29
4519 8109 1.818060 TCACCTCCAATGGCATTTTCG 59.182 47.619 10.65 0.00 0.00 3.46
4520 8110 1.135024 CACCTCCAATGGCATTTTCGG 60.135 52.381 10.65 12.64 0.00 4.30
4521 8111 1.185315 CCTCCAATGGCATTTTCGGT 58.815 50.000 10.65 0.00 0.00 4.69
4522 8112 2.291282 ACCTCCAATGGCATTTTCGGTA 60.291 45.455 10.65 0.00 0.00 4.02
4523 8113 2.757868 CCTCCAATGGCATTTTCGGTAA 59.242 45.455 10.65 0.00 0.00 2.85
4524 8114 3.194542 CCTCCAATGGCATTTTCGGTAAA 59.805 43.478 10.65 0.00 0.00 2.01
4525 8115 4.141959 CCTCCAATGGCATTTTCGGTAAAT 60.142 41.667 10.65 0.00 36.90 1.40
4536 8126 5.898630 TTTTCGGTAAATGAAAGCAAAGC 57.101 34.783 0.00 0.00 36.74 3.51
4537 8127 3.196007 TCGGTAAATGAAAGCAAAGCG 57.804 42.857 0.00 0.00 0.00 4.68
4538 8128 2.809119 TCGGTAAATGAAAGCAAAGCGA 59.191 40.909 0.00 0.00 34.86 4.93
4539 8129 3.251245 TCGGTAAATGAAAGCAAAGCGAA 59.749 39.130 0.00 0.00 34.56 4.70
4540 8130 3.603770 CGGTAAATGAAAGCAAAGCGAAG 59.396 43.478 0.00 0.00 31.91 3.79
4555 8145 2.074547 CGAAGCTTTACGACCAAGGA 57.925 50.000 0.00 0.00 0.00 3.36
4556 8146 1.993370 CGAAGCTTTACGACCAAGGAG 59.007 52.381 0.00 0.00 0.00 3.69
4557 8147 2.352421 CGAAGCTTTACGACCAAGGAGA 60.352 50.000 0.00 0.00 0.00 3.71
4558 8148 3.254892 GAAGCTTTACGACCAAGGAGAG 58.745 50.000 0.00 0.00 0.00 3.20
4559 8149 2.526432 AGCTTTACGACCAAGGAGAGA 58.474 47.619 0.00 0.00 0.00 3.10
4560 8150 3.100671 AGCTTTACGACCAAGGAGAGAT 58.899 45.455 0.00 0.00 0.00 2.75
4561 8151 4.279145 AGCTTTACGACCAAGGAGAGATA 58.721 43.478 0.00 0.00 0.00 1.98
4562 8152 4.710375 AGCTTTACGACCAAGGAGAGATAA 59.290 41.667 0.00 0.00 0.00 1.75
4563 8153 5.044558 GCTTTACGACCAAGGAGAGATAAG 58.955 45.833 0.00 0.00 0.00 1.73
4564 8154 4.650754 TTACGACCAAGGAGAGATAAGC 57.349 45.455 0.00 0.00 0.00 3.09
4565 8155 2.457598 ACGACCAAGGAGAGATAAGCA 58.542 47.619 0.00 0.00 0.00 3.91
4945 9016 4.515567 CACGACTAAGCCTTCTTTTCCTTT 59.484 41.667 0.00 0.00 33.85 3.11
5330 9405 2.215196 GGGCATATTGCTGGCAATTTG 58.785 47.619 22.96 23.55 43.32 2.32
5441 9520 5.105595 GGATGGGACCAAGAAGAATGAAAAG 60.106 44.000 0.00 0.00 0.00 2.27
5458 9537 7.622893 ATGAAAAGAAGAGAGATACTTTGGC 57.377 36.000 0.00 0.00 33.72 4.52
5719 9817 8.364142 GGCTAGATCTGGATATGAATATGTACC 58.636 40.741 10.75 0.00 0.00 3.34
5734 9832 8.254508 TGAATATGTACCCCAAACTTAAAATGC 58.745 33.333 0.00 0.00 0.00 3.56
5782 9880 9.911788 ATAATACACTTCATTCAGTCTGGAATT 57.088 29.630 0.00 0.00 35.37 2.17
5869 9967 7.284919 ACCACCTACAATTTTCAGTTTAAGG 57.715 36.000 0.00 0.00 0.00 2.69
5936 10034 3.897505 ACTTTTGCCTTGATGCCTACTTT 59.102 39.130 0.00 0.00 0.00 2.66
5967 10065 7.720074 GCTATTAGAGGTTACTTAAGGCCAAAT 59.280 37.037 5.01 9.34 0.00 2.32
6224 10323 8.039538 TGAGATGAGCATAGATTATGTTCCATC 58.960 37.037 9.46 11.71 43.24 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.690454 TGGATTCTCCTATTACCAGAAATGA 57.310 36.000 0.00 0.00 37.46 2.57
21 23 1.915489 TGGCAAGCTTGGATTCTCCTA 59.085 47.619 27.10 4.34 37.46 2.94
370 372 4.141287 CAACAAAGGTATGGACAGTGGAA 58.859 43.478 0.00 0.00 0.00 3.53
423 425 2.298158 ATCATCGCGGCCTCTTCGTT 62.298 55.000 6.13 0.00 0.00 3.85
424 426 2.685387 GATCATCGCGGCCTCTTCGT 62.685 60.000 6.13 0.00 0.00 3.85
485 487 0.542333 TCCGACGAGAGATCCAGAGT 59.458 55.000 0.00 0.00 0.00 3.24
493 495 2.107705 GGCAGATTCCGACGAGAGA 58.892 57.895 0.00 0.00 0.00 3.10
554 556 0.386352 CGTCGTCGTCTTTGCCAGTA 60.386 55.000 0.00 0.00 0.00 2.74
557 559 1.659335 GTCGTCGTCGTCTTTGCCA 60.659 57.895 1.33 0.00 38.33 4.92
568 570 1.664306 GAGGAGGTTTGGTCGTCGT 59.336 57.895 0.00 0.00 0.00 4.34
574 576 0.613853 TCGATCGGAGGAGGTTTGGT 60.614 55.000 16.41 0.00 0.00 3.67
618 621 1.371183 CATGACCACCACCACGTCT 59.629 57.895 0.00 0.00 0.00 4.18
620 623 1.070786 GACATGACCACCACCACGT 59.929 57.895 0.00 0.00 0.00 4.49
629 632 1.176619 ACCACGTCTCGACATGACCA 61.177 55.000 0.00 0.00 0.00 4.02
632 635 1.604438 CCAAACCACGTCTCGACATGA 60.604 52.381 0.00 0.00 0.00 3.07
905 962 7.375053 GTTTGGGATAAAACAGACAAATAGCA 58.625 34.615 0.00 0.00 39.39 3.49
912 969 4.088056 TCCGTTTGGGATAAAACAGACA 57.912 40.909 1.28 0.00 40.94 3.41
996 1055 2.745308 CGGGATCAGGGACATGCCA 61.745 63.158 8.20 0.00 38.95 4.92
1318 1412 7.396339 TCTTTAGACCTCTCACTGCTACATTTA 59.604 37.037 0.00 0.00 0.00 1.40
1394 1488 6.438186 TCATACAGCAATTGGATCCAGATA 57.562 37.500 15.53 0.00 0.00 1.98
1646 1744 3.056322 AGAGCTTCATGGGCAAATGTTTC 60.056 43.478 12.59 2.07 0.00 2.78
1681 1781 5.152623 TCTGTTGAAGTCATTACAGGGAG 57.847 43.478 11.42 0.00 36.11 4.30
1689 1789 4.324099 CCTGGATCCTCTGTTGAAGTCATT 60.324 45.833 14.23 0.00 0.00 2.57
1753 1855 5.056480 CACATACCAGCCGAGAAAATGATA 58.944 41.667 0.00 0.00 0.00 2.15
1760 1862 3.296854 AGTATCACATACCAGCCGAGAA 58.703 45.455 0.00 0.00 36.40 2.87
1761 1863 2.945456 AGTATCACATACCAGCCGAGA 58.055 47.619 0.00 0.00 36.40 4.04
1762 1864 4.848562 TTAGTATCACATACCAGCCGAG 57.151 45.455 0.00 0.00 36.40 4.63
1804 1972 5.163754 GCTGAACTTACATCACGGCTTAAAT 60.164 40.000 0.00 0.00 0.00 1.40
1967 2139 7.935210 ACTTCCGTATCAAAAGGAAAACTTCTA 59.065 33.333 0.00 0.00 43.94 2.10
1979 2151 5.360144 TGGGAACAAAACTTCCGTATCAAAA 59.640 36.000 0.00 0.00 40.80 2.44
2014 2186 8.652810 AAAAGCATAAGGACATATTCAAATGC 57.347 30.769 0.00 0.00 36.28 3.56
2275 2494 2.068834 TCCTCTCGTCAGGTATTCCC 57.931 55.000 2.87 0.00 34.76 3.97
2432 2652 8.791675 TCAAACTACAATGTTATGATTCAGCAA 58.208 29.630 0.00 0.00 0.00 3.91
2555 2776 5.674052 TTTACAATGGGTATGCATGCTTT 57.326 34.783 20.33 9.09 0.00 3.51
3026 3359 4.021544 TGGAACTTCAAAAATTCATCCCCG 60.022 41.667 0.00 0.00 0.00 5.73
3620 6897 6.485313 GGTTAGCATACCATATAGCACAAACA 59.515 38.462 2.63 0.00 38.12 2.83
3784 7149 2.945668 GGGTGATTGAAGCTGTGGATAC 59.054 50.000 0.00 0.00 0.00 2.24
3805 7170 0.875728 TACCAATCGCCAAAACACCG 59.124 50.000 0.00 0.00 0.00 4.94
4157 7720 8.547967 TGACTATTTTTCAGGAGTTACACATC 57.452 34.615 0.00 0.00 0.00 3.06
4329 7919 2.103941 GGGGAGCTCAAATCCTCACTAG 59.896 54.545 17.19 0.00 37.27 2.57
4330 7920 2.119495 GGGGAGCTCAAATCCTCACTA 58.881 52.381 17.19 0.00 37.27 2.74
4332 7922 0.462759 CGGGGAGCTCAAATCCTCAC 60.463 60.000 17.19 0.00 37.13 3.51
4333 7923 0.617535 TCGGGGAGCTCAAATCCTCA 60.618 55.000 17.19 0.00 37.13 3.86
4335 7925 1.974236 CTATCGGGGAGCTCAAATCCT 59.026 52.381 17.19 0.00 37.01 3.24
4337 7927 2.608261 CGTCTATCGGGGAGCTCAAATC 60.608 54.545 17.19 0.00 35.71 2.17
4338 7928 1.341531 CGTCTATCGGGGAGCTCAAAT 59.658 52.381 17.19 5.41 35.71 2.32
4339 7929 0.744874 CGTCTATCGGGGAGCTCAAA 59.255 55.000 17.19 0.00 35.71 2.69
4340 7930 0.395311 ACGTCTATCGGGGAGCTCAA 60.395 55.000 17.19 0.00 44.69 3.02
4342 7932 1.158434 CTACGTCTATCGGGGAGCTC 58.842 60.000 4.71 4.71 44.69 4.09
4344 7934 1.242665 CCCTACGTCTATCGGGGAGC 61.243 65.000 0.00 0.00 41.44 4.70
4345 7935 1.242665 GCCCTACGTCTATCGGGGAG 61.243 65.000 0.00 0.00 41.44 4.30
4348 7938 2.273912 GGGCCCTACGTCTATCGGG 61.274 68.421 17.04 0.00 44.69 5.14
4349 7939 2.623915 CGGGCCCTACGTCTATCGG 61.624 68.421 22.43 0.00 44.69 4.18
4350 7940 2.952245 CGGGCCCTACGTCTATCG 59.048 66.667 22.43 0.00 46.00 2.92
4352 7942 1.902432 GAGCGGGCCCTACGTCTAT 60.902 63.158 22.43 0.00 0.00 1.98
4364 7954 4.849329 GACAGCGTACCGAGCGGG 62.849 72.222 14.07 0.00 43.62 6.13
4365 7955 2.884087 AATGACAGCGTACCGAGCGG 62.884 60.000 7.48 7.48 40.04 5.52
4366 7956 1.516386 AATGACAGCGTACCGAGCG 60.516 57.895 0.00 0.00 40.04 5.03
4367 7957 0.736325 ACAATGACAGCGTACCGAGC 60.736 55.000 0.00 0.00 0.00 5.03
4368 7958 1.710013 AACAATGACAGCGTACCGAG 58.290 50.000 0.00 0.00 0.00 4.63
4369 7959 2.157834 AAACAATGACAGCGTACCGA 57.842 45.000 0.00 0.00 0.00 4.69
4370 7960 2.347452 CCTAAACAATGACAGCGTACCG 59.653 50.000 0.00 0.00 0.00 4.02
4371 7961 2.676342 CCCTAAACAATGACAGCGTACC 59.324 50.000 0.00 0.00 0.00 3.34
4372 7962 2.676342 CCCCTAAACAATGACAGCGTAC 59.324 50.000 0.00 0.00 0.00 3.67
4373 7963 2.355310 CCCCCTAAACAATGACAGCGTA 60.355 50.000 0.00 0.00 0.00 4.42
4374 7964 1.613255 CCCCCTAAACAATGACAGCGT 60.613 52.381 0.00 0.00 0.00 5.07
4375 7965 1.094785 CCCCCTAAACAATGACAGCG 58.905 55.000 0.00 0.00 0.00 5.18
4391 7981 5.048846 TCATGCTAGAATTAAGAACCCCC 57.951 43.478 0.00 0.00 0.00 5.40
4392 7982 6.603599 ACTTTCATGCTAGAATTAAGAACCCC 59.396 38.462 8.67 0.00 0.00 4.95
4393 7983 7.201741 GGACTTTCATGCTAGAATTAAGAACCC 60.202 40.741 8.67 4.51 0.00 4.11
4394 7984 7.466050 CGGACTTTCATGCTAGAATTAAGAACC 60.466 40.741 8.67 9.51 0.00 3.62
4395 7985 7.277981 TCGGACTTTCATGCTAGAATTAAGAAC 59.722 37.037 8.67 3.94 0.00 3.01
4396 7986 7.327975 TCGGACTTTCATGCTAGAATTAAGAA 58.672 34.615 8.67 0.00 0.00 2.52
4397 7987 6.873997 TCGGACTTTCATGCTAGAATTAAGA 58.126 36.000 8.67 0.00 0.00 2.10
4398 7988 6.758886 ACTCGGACTTTCATGCTAGAATTAAG 59.241 38.462 0.00 0.00 0.00 1.85
4399 7989 6.640518 ACTCGGACTTTCATGCTAGAATTAA 58.359 36.000 0.00 0.00 0.00 1.40
4400 7990 6.222038 ACTCGGACTTTCATGCTAGAATTA 57.778 37.500 0.00 0.00 0.00 1.40
4401 7991 5.091261 ACTCGGACTTTCATGCTAGAATT 57.909 39.130 0.00 0.00 0.00 2.17
4402 7992 4.744795 ACTCGGACTTTCATGCTAGAAT 57.255 40.909 0.00 0.00 0.00 2.40
4403 7993 4.537135 AACTCGGACTTTCATGCTAGAA 57.463 40.909 0.00 0.00 0.00 2.10
4404 7994 5.654603 TTAACTCGGACTTTCATGCTAGA 57.345 39.130 0.00 0.00 0.00 2.43
4405 7995 6.673316 GCTTTTAACTCGGACTTTCATGCTAG 60.673 42.308 0.00 0.00 0.00 3.42
4406 7996 5.121768 GCTTTTAACTCGGACTTTCATGCTA 59.878 40.000 0.00 0.00 0.00 3.49
4407 7997 4.083271 GCTTTTAACTCGGACTTTCATGCT 60.083 41.667 0.00 0.00 0.00 3.79
4408 7998 4.159120 GCTTTTAACTCGGACTTTCATGC 58.841 43.478 0.00 0.00 0.00 4.06
4409 7999 4.151689 TCGCTTTTAACTCGGACTTTCATG 59.848 41.667 0.00 0.00 0.00 3.07
4410 8000 4.312443 TCGCTTTTAACTCGGACTTTCAT 58.688 39.130 0.00 0.00 0.00 2.57
4411 8001 3.719924 TCGCTTTTAACTCGGACTTTCA 58.280 40.909 0.00 0.00 0.00 2.69
4412 8002 4.387862 TGATCGCTTTTAACTCGGACTTTC 59.612 41.667 0.00 0.00 0.00 2.62
4413 8003 4.312443 TGATCGCTTTTAACTCGGACTTT 58.688 39.130 0.00 0.00 0.00 2.66
4414 8004 3.921677 TGATCGCTTTTAACTCGGACTT 58.078 40.909 0.00 0.00 0.00 3.01
4415 8005 3.587797 TGATCGCTTTTAACTCGGACT 57.412 42.857 0.00 0.00 0.00 3.85
4416 8006 3.863424 TGATGATCGCTTTTAACTCGGAC 59.137 43.478 0.00 0.00 0.00 4.79
4417 8007 4.118093 TGATGATCGCTTTTAACTCGGA 57.882 40.909 0.00 0.00 0.00 4.55
4418 8008 5.409643 AATGATGATCGCTTTTAACTCGG 57.590 39.130 0.00 0.00 0.00 4.63
4419 8009 5.051708 TCGAATGATGATCGCTTTTAACTCG 60.052 40.000 0.00 0.00 40.04 4.18
4420 8010 6.274001 TCGAATGATGATCGCTTTTAACTC 57.726 37.500 0.00 0.00 40.04 3.01
4421 8011 6.092122 TGTTCGAATGATGATCGCTTTTAACT 59.908 34.615 0.00 0.00 40.04 2.24
4422 8012 6.192863 GTGTTCGAATGATGATCGCTTTTAAC 59.807 38.462 0.00 0.00 40.04 2.01
4423 8013 6.247903 GTGTTCGAATGATGATCGCTTTTAA 58.752 36.000 0.00 0.00 40.04 1.52
4424 8014 5.500131 CGTGTTCGAATGATGATCGCTTTTA 60.500 40.000 0.00 0.00 40.04 1.52
4425 8015 4.651994 GTGTTCGAATGATGATCGCTTTT 58.348 39.130 0.00 0.00 40.04 2.27
4426 8016 3.242091 CGTGTTCGAATGATGATCGCTTT 60.242 43.478 0.00 0.00 40.04 3.51
4427 8017 2.282555 CGTGTTCGAATGATGATCGCTT 59.717 45.455 0.00 0.00 40.04 4.68
4428 8018 1.854743 CGTGTTCGAATGATGATCGCT 59.145 47.619 0.00 0.00 40.04 4.93
4429 8019 1.654775 GCGTGTTCGAATGATGATCGC 60.655 52.381 0.00 6.91 40.04 4.58
4430 8020 1.071239 GGCGTGTTCGAATGATGATCG 60.071 52.381 0.00 0.69 41.53 3.69
4431 8021 1.071239 CGGCGTGTTCGAATGATGATC 60.071 52.381 0.00 0.00 39.71 2.92
4432 8022 0.930310 CGGCGTGTTCGAATGATGAT 59.070 50.000 0.00 0.00 39.71 2.45
4433 8023 1.692148 GCGGCGTGTTCGAATGATGA 61.692 55.000 9.37 0.00 39.71 2.92
4434 8024 1.296867 GCGGCGTGTTCGAATGATG 60.297 57.895 9.37 0.00 39.71 3.07
4435 8025 2.798501 CGCGGCGTGTTCGAATGAT 61.799 57.895 15.36 0.00 39.71 2.45
4436 8026 3.474904 CGCGGCGTGTTCGAATGA 61.475 61.111 15.36 0.00 39.71 2.57
4437 8027 2.757946 AAACGCGGCGTGTTCGAATG 62.758 55.000 35.05 5.18 39.99 2.67
4438 8028 2.108344 AAAACGCGGCGTGTTCGAAT 62.108 50.000 35.05 19.47 39.99 3.34
4439 8029 1.485838 TAAAACGCGGCGTGTTCGAA 61.486 50.000 35.05 21.64 39.99 3.71
4440 8030 1.948138 TAAAACGCGGCGTGTTCGA 60.948 52.632 35.05 23.85 39.99 3.71
4441 8031 1.785533 GTAAAACGCGGCGTGTTCG 60.786 57.895 35.05 20.03 39.99 3.95
4442 8032 0.720173 CAGTAAAACGCGGCGTGTTC 60.720 55.000 35.05 23.79 39.99 3.18
4443 8033 1.277440 CAGTAAAACGCGGCGTGTT 59.723 52.632 30.82 30.82 39.99 3.32
4444 8034 2.600475 CCAGTAAAACGCGGCGTGT 61.600 57.895 30.10 22.12 39.99 4.49
4445 8035 2.172419 CCAGTAAAACGCGGCGTG 59.828 61.111 30.10 20.21 39.99 5.34
4446 8036 2.992607 TTCCCAGTAAAACGCGGCGT 62.993 55.000 24.03 24.03 43.97 5.68
4447 8037 2.235536 CTTCCCAGTAAAACGCGGCG 62.236 60.000 22.36 22.36 0.00 6.46
4448 8038 1.500396 CTTCCCAGTAAAACGCGGC 59.500 57.895 12.47 0.00 0.00 6.53
4449 8039 0.320946 TCCTTCCCAGTAAAACGCGG 60.321 55.000 12.47 0.00 0.00 6.46
4450 8040 1.664151 GATCCTTCCCAGTAAAACGCG 59.336 52.381 3.53 3.53 0.00 6.01
4451 8041 1.664151 CGATCCTTCCCAGTAAAACGC 59.336 52.381 0.00 0.00 0.00 4.84
4452 8042 3.241067 TCGATCCTTCCCAGTAAAACG 57.759 47.619 0.00 0.00 0.00 3.60
4453 8043 3.688185 GGTTCGATCCTTCCCAGTAAAAC 59.312 47.826 5.21 0.00 0.00 2.43
4454 8044 3.328343 TGGTTCGATCCTTCCCAGTAAAA 59.672 43.478 13.55 0.00 0.00 1.52
4455 8045 2.907696 TGGTTCGATCCTTCCCAGTAAA 59.092 45.455 13.55 0.00 0.00 2.01
4456 8046 2.542550 TGGTTCGATCCTTCCCAGTAA 58.457 47.619 13.55 0.00 0.00 2.24
4457 8047 2.241281 TGGTTCGATCCTTCCCAGTA 57.759 50.000 13.55 0.00 0.00 2.74
4458 8048 1.210478 CATGGTTCGATCCTTCCCAGT 59.790 52.381 13.55 0.00 0.00 4.00
4459 8049 1.475751 CCATGGTTCGATCCTTCCCAG 60.476 57.143 13.55 0.00 0.00 4.45
4460 8050 0.546122 CCATGGTTCGATCCTTCCCA 59.454 55.000 13.55 1.14 0.00 4.37
4461 8051 0.179018 CCCATGGTTCGATCCTTCCC 60.179 60.000 11.73 0.00 0.00 3.97
4462 8052 0.837272 TCCCATGGTTCGATCCTTCC 59.163 55.000 11.73 0.00 0.00 3.46
4463 8053 2.289565 GTTCCCATGGTTCGATCCTTC 58.710 52.381 11.73 0.00 0.00 3.46
4464 8054 1.406887 CGTTCCCATGGTTCGATCCTT 60.407 52.381 11.73 4.66 0.00 3.36
4465 8055 0.178068 CGTTCCCATGGTTCGATCCT 59.822 55.000 11.73 0.00 0.00 3.24
4466 8056 0.177141 TCGTTCCCATGGTTCGATCC 59.823 55.000 11.73 5.52 0.00 3.36
4467 8057 2.018542 TTCGTTCCCATGGTTCGATC 57.981 50.000 18.73 5.94 32.31 3.69
4468 8058 2.093181 TCATTCGTTCCCATGGTTCGAT 60.093 45.455 18.73 9.95 32.31 3.59
4469 8059 1.276705 TCATTCGTTCCCATGGTTCGA 59.723 47.619 11.73 14.14 0.00 3.71
4470 8060 1.732941 TCATTCGTTCCCATGGTTCG 58.267 50.000 11.73 12.04 0.00 3.95
4471 8061 2.817258 TGTTCATTCGTTCCCATGGTTC 59.183 45.455 11.73 0.00 0.00 3.62
4472 8062 2.819608 CTGTTCATTCGTTCCCATGGTT 59.180 45.455 11.73 0.00 0.00 3.67
4473 8063 2.436417 CTGTTCATTCGTTCCCATGGT 58.564 47.619 11.73 0.00 0.00 3.55
4474 8064 1.745087 CCTGTTCATTCGTTCCCATGG 59.255 52.381 4.14 4.14 0.00 3.66
4475 8065 1.745087 CCCTGTTCATTCGTTCCCATG 59.255 52.381 0.00 0.00 0.00 3.66
4476 8066 1.955208 GCCCTGTTCATTCGTTCCCAT 60.955 52.381 0.00 0.00 0.00 4.00
4477 8067 0.608035 GCCCTGTTCATTCGTTCCCA 60.608 55.000 0.00 0.00 0.00 4.37
4478 8068 0.322546 AGCCCTGTTCATTCGTTCCC 60.323 55.000 0.00 0.00 0.00 3.97
4479 8069 2.396590 TAGCCCTGTTCATTCGTTCC 57.603 50.000 0.00 0.00 0.00 3.62
4480 8070 3.309954 GTGATAGCCCTGTTCATTCGTTC 59.690 47.826 0.00 0.00 0.00 3.95
4481 8071 3.270877 GTGATAGCCCTGTTCATTCGTT 58.729 45.455 0.00 0.00 0.00 3.85
4482 8072 2.420129 GGTGATAGCCCTGTTCATTCGT 60.420 50.000 0.00 0.00 0.00 3.85
4483 8073 2.158900 AGGTGATAGCCCTGTTCATTCG 60.159 50.000 0.00 0.00 0.00 3.34
4484 8074 3.471680 GAGGTGATAGCCCTGTTCATTC 58.528 50.000 0.00 0.00 30.60 2.67
4485 8075 2.173569 GGAGGTGATAGCCCTGTTCATT 59.826 50.000 0.00 0.00 30.60 2.57
4486 8076 1.771255 GGAGGTGATAGCCCTGTTCAT 59.229 52.381 0.00 0.00 30.60 2.57
4487 8077 1.204146 GGAGGTGATAGCCCTGTTCA 58.796 55.000 0.00 0.00 30.60 3.18
4488 8078 1.204146 TGGAGGTGATAGCCCTGTTC 58.796 55.000 0.00 0.00 30.60 3.18
4489 8079 1.668826 TTGGAGGTGATAGCCCTGTT 58.331 50.000 0.00 0.00 30.60 3.16
4490 8080 1.492176 CATTGGAGGTGATAGCCCTGT 59.508 52.381 0.00 0.00 30.60 4.00
4491 8081 1.202855 CCATTGGAGGTGATAGCCCTG 60.203 57.143 0.00 0.00 30.60 4.45
4492 8082 1.143813 CCATTGGAGGTGATAGCCCT 58.856 55.000 0.00 0.00 34.11 5.19
4493 8083 0.538287 GCCATTGGAGGTGATAGCCC 60.538 60.000 6.95 0.00 0.00 5.19
4494 8084 0.183492 TGCCATTGGAGGTGATAGCC 59.817 55.000 6.95 0.00 0.00 3.93
4495 8085 2.283145 ATGCCATTGGAGGTGATAGC 57.717 50.000 6.95 0.00 0.00 2.97
4496 8086 4.261322 CGAAAATGCCATTGGAGGTGATAG 60.261 45.833 6.95 0.00 0.00 2.08
4497 8087 3.631686 CGAAAATGCCATTGGAGGTGATA 59.368 43.478 6.95 0.00 0.00 2.15
4498 8088 2.428171 CGAAAATGCCATTGGAGGTGAT 59.572 45.455 6.95 0.00 0.00 3.06
4499 8089 1.818060 CGAAAATGCCATTGGAGGTGA 59.182 47.619 6.95 0.00 0.00 4.02
4500 8090 1.135024 CCGAAAATGCCATTGGAGGTG 60.135 52.381 6.95 0.00 0.00 4.00
4501 8091 1.185315 CCGAAAATGCCATTGGAGGT 58.815 50.000 6.95 0.00 0.00 3.85
4502 8092 1.185315 ACCGAAAATGCCATTGGAGG 58.815 50.000 6.95 2.30 0.00 4.30
4503 8093 4.448537 TTTACCGAAAATGCCATTGGAG 57.551 40.909 6.95 0.00 0.00 3.86
4504 8094 4.753233 CATTTACCGAAAATGCCATTGGA 58.247 39.130 6.95 0.00 45.87 3.53
4513 8103 5.118510 CGCTTTGCTTTCATTTACCGAAAAT 59.881 36.000 0.00 0.00 38.36 1.82
4514 8104 4.442733 CGCTTTGCTTTCATTTACCGAAAA 59.557 37.500 0.00 0.00 32.24 2.29
4515 8105 3.978217 CGCTTTGCTTTCATTTACCGAAA 59.022 39.130 0.00 0.00 0.00 3.46
4516 8106 3.251245 TCGCTTTGCTTTCATTTACCGAA 59.749 39.130 0.00 0.00 0.00 4.30
4517 8107 2.809119 TCGCTTTGCTTTCATTTACCGA 59.191 40.909 0.00 0.00 0.00 4.69
4518 8108 3.196007 TCGCTTTGCTTTCATTTACCG 57.804 42.857 0.00 0.00 0.00 4.02
4519 8109 3.364920 GCTTCGCTTTGCTTTCATTTACC 59.635 43.478 0.00 0.00 0.00 2.85
4520 8110 4.229876 AGCTTCGCTTTGCTTTCATTTAC 58.770 39.130 0.00 0.00 33.89 2.01
4521 8111 4.503741 AGCTTCGCTTTGCTTTCATTTA 57.496 36.364 0.00 0.00 33.89 1.40
4522 8112 3.375782 AGCTTCGCTTTGCTTTCATTT 57.624 38.095 0.00 0.00 33.89 2.32
4534 8124 1.429463 CTTGGTCGTAAAGCTTCGCT 58.571 50.000 0.00 0.00 42.56 4.93
4535 8125 0.442699 CCTTGGTCGTAAAGCTTCGC 59.557 55.000 0.00 0.00 0.00 4.70
4536 8126 1.993370 CTCCTTGGTCGTAAAGCTTCG 59.007 52.381 0.00 0.00 0.00 3.79
4537 8127 3.056749 TCTCTCCTTGGTCGTAAAGCTTC 60.057 47.826 0.00 0.00 0.00 3.86
4538 8128 2.897969 TCTCTCCTTGGTCGTAAAGCTT 59.102 45.455 0.00 0.00 0.00 3.74
4539 8129 2.526432 TCTCTCCTTGGTCGTAAAGCT 58.474 47.619 0.00 0.00 0.00 3.74
4540 8130 3.528597 ATCTCTCCTTGGTCGTAAAGC 57.471 47.619 0.00 0.00 0.00 3.51
4541 8131 5.044558 GCTTATCTCTCCTTGGTCGTAAAG 58.955 45.833 0.00 0.00 0.00 1.85
4542 8132 4.464951 TGCTTATCTCTCCTTGGTCGTAAA 59.535 41.667 0.00 0.00 0.00 2.01
4543 8133 4.021229 TGCTTATCTCTCCTTGGTCGTAA 58.979 43.478 0.00 0.00 0.00 3.18
4544 8134 3.628008 TGCTTATCTCTCCTTGGTCGTA 58.372 45.455 0.00 0.00 0.00 3.43
4545 8135 2.457598 TGCTTATCTCTCCTTGGTCGT 58.542 47.619 0.00 0.00 0.00 4.34
4546 8136 3.742433 ATGCTTATCTCTCCTTGGTCG 57.258 47.619 0.00 0.00 0.00 4.79
4547 8137 9.160496 CATTAATATGCTTATCTCTCCTTGGTC 57.840 37.037 0.00 0.00 0.00 4.02
4548 8138 8.664079 ACATTAATATGCTTATCTCTCCTTGGT 58.336 33.333 0.00 0.00 35.03 3.67
4549 8139 8.944029 CACATTAATATGCTTATCTCTCCTTGG 58.056 37.037 0.00 0.00 35.03 3.61
4550 8140 8.449397 GCACATTAATATGCTTATCTCTCCTTG 58.551 37.037 11.49 0.00 38.84 3.61
4551 8141 8.558973 GCACATTAATATGCTTATCTCTCCTT 57.441 34.615 11.49 0.00 38.84 3.36
4562 8152 7.320443 TCGAAAGAAAGCACATTAATATGCT 57.680 32.000 15.47 15.47 45.06 3.79
4667 8693 7.173907 CACAACTGACTCCTAATTCTTGTGAAT 59.826 37.037 0.00 0.00 44.08 2.57
4751 8779 1.533625 CCACCCAGGTACATTGTGTG 58.466 55.000 0.00 0.37 0.00 3.82
5097 9168 2.391616 TGCACTAGCCTCATTCTGTG 57.608 50.000 0.00 0.00 41.13 3.66
5267 9342 7.765360 ACATCACAACAACATCAGAATTTTTGT 59.235 29.630 0.00 0.00 31.74 2.83
5330 9405 4.689612 TCCTACATTGATAGCCAGGTTC 57.310 45.455 0.00 0.00 0.00 3.62
5441 9520 3.119101 TGACCGCCAAAGTATCTCTCTTC 60.119 47.826 0.00 0.00 0.00 2.87
5458 9537 3.323243 AGGAAATACAGAACGTTGACCG 58.677 45.455 5.00 0.00 44.03 4.79
5671 9769 4.141937 CCGAGGTCATCAAACTCCAGATTA 60.142 45.833 0.00 0.00 0.00 1.75
5719 9817 5.200368 ACACTCAGCATTTTAAGTTTGGG 57.800 39.130 0.00 0.00 0.00 4.12
5734 9832 8.833231 TTATCTTGGACTAAAAGAACACTCAG 57.167 34.615 0.00 0.00 37.22 3.35
5782 9880 0.819259 GACCTGCCAAGTGCTGAACA 60.819 55.000 0.00 0.00 41.11 3.18
5866 9964 3.468071 GGGGGTAATGGAGTTTTCCTT 57.532 47.619 0.00 0.00 44.36 3.36
5911 10009 0.733909 GGCATCAAGGCAAAAGTCGC 60.734 55.000 0.00 0.00 43.51 5.19
5936 10034 8.365647 GCCTTAAGTAACCTCTAATAGCACATA 58.634 37.037 0.97 0.00 0.00 2.29
6224 10323 1.303888 AGGTGTGCAATGCTCCCTG 60.304 57.895 6.82 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.