Multiple sequence alignment - TraesCS6A01G184300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G184300 chr6A 100.000 3419 0 0 1 3419 215099447 215096029 0.000000e+00 6314.0
1 TraesCS6A01G184300 chr6A 94.854 991 49 2 2427 3416 155922970 155923959 0.000000e+00 1546.0
2 TraesCS6A01G184300 chr6D 94.410 1932 91 11 360 2288 157435341 157437258 0.000000e+00 2953.0
3 TraesCS6A01G184300 chr6D 89.347 291 30 1 63 353 9868751 9869040 6.970000e-97 364.0
4 TraesCS6A01G184300 chr6D 94.737 95 5 0 360 454 360423276 360423370 7.640000e-32 148.0
5 TraesCS6A01G184300 chr6D 78.226 124 24 3 545 667 233291913 233291792 3.660000e-10 76.8
6 TraesCS6A01G184300 chr6B 98.464 1367 21 0 922 2288 280348533 280349899 0.000000e+00 2409.0
7 TraesCS6A01G184300 chr6B 87.941 340 37 4 563 900 280296879 280297216 6.870000e-107 398.0
8 TraesCS6A01G184300 chr6B 88.424 311 34 2 63 372 17989625 17989316 1.160000e-99 374.0
9 TraesCS6A01G184300 chrUn 94.663 993 53 0 2427 3419 1563964 1562972 0.000000e+00 1541.0
10 TraesCS6A01G184300 chrUn 81.818 154 21 6 532 683 325784288 325784436 4.630000e-24 122.0
11 TraesCS6A01G184300 chr5A 94.747 990 52 0 2427 3416 320461423 320462412 0.000000e+00 1541.0
12 TraesCS6A01G184300 chr5A 94.652 991 52 1 2427 3416 513948539 513949529 0.000000e+00 1535.0
13 TraesCS6A01G184300 chr5A 91.197 284 22 3 72 353 149222404 149222686 1.930000e-102 383.0
14 TraesCS6A01G184300 chr3A 94.758 992 49 3 2427 3416 524295446 524296436 0.000000e+00 1541.0
15 TraesCS6A01G184300 chr4A 94.652 991 51 2 2427 3416 537484001 537484990 0.000000e+00 1535.0
16 TraesCS6A01G184300 chr1A 94.389 998 53 3 2425 3419 440170166 440169169 0.000000e+00 1530.0
17 TraesCS6A01G184300 chr1A 94.551 991 53 1 2427 3416 482972331 482973321 0.000000e+00 1530.0
18 TraesCS6A01G184300 chr1A 94.183 997 56 2 2424 3419 459995710 459994715 0.000000e+00 1519.0
19 TraesCS6A01G184300 chr2B 91.436 362 29 2 1 360 59264688 59264327 2.370000e-136 496.0
20 TraesCS6A01G184300 chr2B 79.032 186 32 6 477 659 78857791 78857972 1.670000e-23 121.0
21 TraesCS6A01G184300 chr1B 93.313 329 19 2 23 350 197786024 197785698 1.850000e-132 483.0
22 TraesCS6A01G184300 chr1B 89.769 303 28 3 62 362 457467645 457467946 5.350000e-103 385.0
23 TraesCS6A01G184300 chr7B 90.529 359 33 1 1 358 88139685 88139327 1.110000e-129 473.0
24 TraesCS6A01G184300 chr7B 80.272 147 25 4 538 683 273665913 273665770 1.300000e-19 108.0
25 TraesCS6A01G184300 chr2D 90.032 311 28 3 49 358 485458520 485458212 1.910000e-107 399.0
26 TraesCS6A01G184300 chr2D 81.443 194 28 8 470 659 50673017 50673206 5.910000e-33 152.0
27 TraesCS6A01G184300 chr2D 91.919 99 7 1 360 458 249967609 249967512 1.650000e-28 137.0
28 TraesCS6A01G184300 chr2D 82.857 140 24 0 538 677 263794915 263794776 3.580000e-25 126.0
29 TraesCS6A01G184300 chr5B 87.129 303 35 3 62 363 576872040 576871741 1.180000e-89 340.0
30 TraesCS6A01G184300 chr3B 84.916 179 20 6 501 676 665668119 665668293 1.260000e-39 174.0
31 TraesCS6A01G184300 chr7D 94.737 95 5 0 360 454 71669064 71669158 7.640000e-32 148.0
32 TraesCS6A01G184300 chr3D 92.929 99 7 0 360 458 369303046 369303144 9.890000e-31 145.0
33 TraesCS6A01G184300 chr4D 93.684 95 6 0 360 454 469405391 469405297 3.560000e-30 143.0
34 TraesCS6A01G184300 chr4D 91.919 99 8 0 360 458 233764938 233765036 4.600000e-29 139.0
35 TraesCS6A01G184300 chr4D 91.919 99 8 0 360 458 233773820 233773918 4.600000e-29 139.0
36 TraesCS6A01G184300 chr4D 88.889 117 8 4 346 458 296917596 296917711 4.600000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G184300 chr6A 215096029 215099447 3418 True 6314 6314 100.000 1 3419 1 chr6A.!!$R1 3418
1 TraesCS6A01G184300 chr6A 155922970 155923959 989 False 1546 1546 94.854 2427 3416 1 chr6A.!!$F1 989
2 TraesCS6A01G184300 chr6D 157435341 157437258 1917 False 2953 2953 94.410 360 2288 1 chr6D.!!$F2 1928
3 TraesCS6A01G184300 chr6B 280348533 280349899 1366 False 2409 2409 98.464 922 2288 1 chr6B.!!$F2 1366
4 TraesCS6A01G184300 chrUn 1562972 1563964 992 True 1541 1541 94.663 2427 3419 1 chrUn.!!$R1 992
5 TraesCS6A01G184300 chr5A 320461423 320462412 989 False 1541 1541 94.747 2427 3416 1 chr5A.!!$F2 989
6 TraesCS6A01G184300 chr5A 513948539 513949529 990 False 1535 1535 94.652 2427 3416 1 chr5A.!!$F3 989
7 TraesCS6A01G184300 chr3A 524295446 524296436 990 False 1541 1541 94.758 2427 3416 1 chr3A.!!$F1 989
8 TraesCS6A01G184300 chr4A 537484001 537484990 989 False 1535 1535 94.652 2427 3416 1 chr4A.!!$F1 989
9 TraesCS6A01G184300 chr1A 440169169 440170166 997 True 1530 1530 94.389 2425 3419 1 chr1A.!!$R1 994
10 TraesCS6A01G184300 chr1A 482972331 482973321 990 False 1530 1530 94.551 2427 3416 1 chr1A.!!$F1 989
11 TraesCS6A01G184300 chr1A 459994715 459995710 995 True 1519 1519 94.183 2424 3419 1 chr1A.!!$R2 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 852 0.110238 CGCGAGTTTGAACACCATGG 60.110 55.0 11.19 11.19 0.0 3.66 F
2303 2305 0.031111 ATGTCTCCTTCGATGGGGGA 60.031 55.0 16.70 10.11 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 2328 0.033366 GTCAACCATTTTTGGCCGCT 59.967 50.0 0.0 0.0 0.00 5.52 R
3367 3374 0.686769 AGGCCGTAGAGGGATTCGTT 60.687 55.0 0.0 0.0 41.48 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.258456 TGATAATTACACGACTCTGTCCC 57.742 43.478 0.00 0.00 0.00 4.46
24 25 4.954202 TGATAATTACACGACTCTGTCCCT 59.046 41.667 0.00 0.00 0.00 4.20
25 26 6.124340 TGATAATTACACGACTCTGTCCCTA 58.876 40.000 0.00 0.00 0.00 3.53
26 27 6.776116 TGATAATTACACGACTCTGTCCCTAT 59.224 38.462 0.00 0.00 0.00 2.57
27 28 4.920640 ATTACACGACTCTGTCCCTATG 57.079 45.455 0.00 0.00 0.00 2.23
28 29 2.217510 ACACGACTCTGTCCCTATGT 57.782 50.000 0.00 0.00 0.00 2.29
29 30 1.819288 ACACGACTCTGTCCCTATGTG 59.181 52.381 0.00 0.00 0.00 3.21
30 31 2.092323 CACGACTCTGTCCCTATGTGA 58.908 52.381 0.00 0.00 0.00 3.58
31 32 2.690497 CACGACTCTGTCCCTATGTGAT 59.310 50.000 0.00 0.00 0.00 3.06
32 33 3.131223 CACGACTCTGTCCCTATGTGATT 59.869 47.826 0.00 0.00 0.00 2.57
33 34 4.338400 CACGACTCTGTCCCTATGTGATTA 59.662 45.833 0.00 0.00 0.00 1.75
34 35 5.010112 CACGACTCTGTCCCTATGTGATTAT 59.990 44.000 0.00 0.00 0.00 1.28
35 36 5.598830 ACGACTCTGTCCCTATGTGATTATT 59.401 40.000 0.00 0.00 0.00 1.40
36 37 6.098409 ACGACTCTGTCCCTATGTGATTATTT 59.902 38.462 0.00 0.00 0.00 1.40
37 38 7.287005 ACGACTCTGTCCCTATGTGATTATTTA 59.713 37.037 0.00 0.00 0.00 1.40
38 39 8.307483 CGACTCTGTCCCTATGTGATTATTTAT 58.693 37.037 0.00 0.00 0.00 1.40
39 40 9.429359 GACTCTGTCCCTATGTGATTATTTATG 57.571 37.037 0.00 0.00 0.00 1.90
40 41 9.159254 ACTCTGTCCCTATGTGATTATTTATGA 57.841 33.333 0.00 0.00 0.00 2.15
42 43 9.778741 TCTGTCCCTATGTGATTATTTATGAAC 57.221 33.333 0.00 0.00 0.00 3.18
43 44 9.559732 CTGTCCCTATGTGATTATTTATGAACA 57.440 33.333 0.00 0.00 0.00 3.18
129 130 7.756395 AGTCACATGTGAGAAGATTTCATTT 57.244 32.000 28.54 0.00 40.75 2.32
130 131 8.174733 AGTCACATGTGAGAAGATTTCATTTT 57.825 30.769 28.54 0.00 40.75 1.82
131 132 8.636213 AGTCACATGTGAGAAGATTTCATTTTT 58.364 29.630 28.54 0.00 40.75 1.94
132 133 8.697067 GTCACATGTGAGAAGATTTCATTTTTG 58.303 33.333 28.54 0.00 40.75 2.44
133 134 8.415553 TCACATGTGAGAAGATTTCATTTTTGT 58.584 29.630 24.56 0.00 34.14 2.83
134 135 8.484799 CACATGTGAGAAGATTTCATTTTTGTG 58.515 33.333 21.64 0.00 0.00 3.33
135 136 8.199449 ACATGTGAGAAGATTTCATTTTTGTGT 58.801 29.630 0.00 0.00 0.00 3.72
136 137 8.697067 CATGTGAGAAGATTTCATTTTTGTGTC 58.303 33.333 0.00 0.00 0.00 3.67
137 138 7.770201 TGTGAGAAGATTTCATTTTTGTGTCA 58.230 30.769 0.00 0.00 0.00 3.58
138 139 8.415553 TGTGAGAAGATTTCATTTTTGTGTCAT 58.584 29.630 0.00 0.00 0.00 3.06
139 140 8.697067 GTGAGAAGATTTCATTTTTGTGTCATG 58.303 33.333 0.00 0.00 0.00 3.07
140 141 8.415553 TGAGAAGATTTCATTTTTGTGTCATGT 58.584 29.630 0.00 0.00 0.00 3.21
141 142 9.897744 GAGAAGATTTCATTTTTGTGTCATGTA 57.102 29.630 0.00 0.00 0.00 2.29
142 143 9.903682 AGAAGATTTCATTTTTGTGTCATGTAG 57.096 29.630 0.00 0.00 0.00 2.74
143 144 9.897744 GAAGATTTCATTTTTGTGTCATGTAGA 57.102 29.630 0.00 0.00 0.00 2.59
145 146 9.683069 AGATTTCATTTTTGTGTCATGTAGAAC 57.317 29.630 0.00 0.00 0.00 3.01
146 147 9.462174 GATTTCATTTTTGTGTCATGTAGAACA 57.538 29.630 0.00 0.00 0.00 3.18
147 148 9.814899 ATTTCATTTTTGTGTCATGTAGAACAA 57.185 25.926 0.00 0.00 0.00 2.83
148 149 8.854979 TTCATTTTTGTGTCATGTAGAACAAG 57.145 30.769 0.00 0.00 32.69 3.16
149 150 7.424803 TCATTTTTGTGTCATGTAGAACAAGG 58.575 34.615 0.00 0.00 32.69 3.61
150 151 6.767524 TTTTTGTGTCATGTAGAACAAGGT 57.232 33.333 0.00 0.00 32.69 3.50
151 152 7.867305 TTTTTGTGTCATGTAGAACAAGGTA 57.133 32.000 0.00 0.00 32.69 3.08
152 153 8.458573 TTTTTGTGTCATGTAGAACAAGGTAT 57.541 30.769 0.00 0.00 32.69 2.73
153 154 9.562408 TTTTTGTGTCATGTAGAACAAGGTATA 57.438 29.630 0.00 0.00 32.69 1.47
154 155 9.562408 TTTTGTGTCATGTAGAACAAGGTATAA 57.438 29.630 0.00 0.00 32.69 0.98
155 156 9.733556 TTTGTGTCATGTAGAACAAGGTATAAT 57.266 29.630 0.00 0.00 32.69 1.28
156 157 8.942338 TGTGTCATGTAGAACAAGGTATAATC 57.058 34.615 0.00 0.00 0.00 1.75
157 158 8.758829 TGTGTCATGTAGAACAAGGTATAATCT 58.241 33.333 0.00 0.00 0.00 2.40
158 159 9.601217 GTGTCATGTAGAACAAGGTATAATCTT 57.399 33.333 0.00 0.00 0.00 2.40
159 160 9.817809 TGTCATGTAGAACAAGGTATAATCTTC 57.182 33.333 0.00 0.00 0.00 2.87
160 161 9.817809 GTCATGTAGAACAAGGTATAATCTTCA 57.182 33.333 0.00 0.00 0.00 3.02
174 175 9.890629 GGTATAATCTTCATGATAATGTAGCCA 57.109 33.333 0.00 0.00 34.45 4.75
177 178 6.754702 ATCTTCATGATAATGTAGCCATGC 57.245 37.500 0.00 0.00 37.06 4.06
178 179 5.623169 TCTTCATGATAATGTAGCCATGCA 58.377 37.500 0.00 0.00 37.06 3.96
179 180 6.063404 TCTTCATGATAATGTAGCCATGCAA 58.937 36.000 0.00 0.00 37.06 4.08
180 181 6.717997 TCTTCATGATAATGTAGCCATGCAAT 59.282 34.615 0.00 0.00 37.06 3.56
181 182 6.904463 TCATGATAATGTAGCCATGCAATT 57.096 33.333 0.00 0.00 37.06 2.32
182 183 6.916440 TCATGATAATGTAGCCATGCAATTC 58.084 36.000 0.00 0.00 37.06 2.17
183 184 5.710513 TGATAATGTAGCCATGCAATTCC 57.289 39.130 0.00 0.00 0.00 3.01
184 185 5.139001 TGATAATGTAGCCATGCAATTCCA 58.861 37.500 0.00 0.00 0.00 3.53
185 186 5.597594 TGATAATGTAGCCATGCAATTCCAA 59.402 36.000 0.00 0.00 0.00 3.53
186 187 4.822685 AATGTAGCCATGCAATTCCAAA 57.177 36.364 0.00 0.00 0.00 3.28
187 188 3.872511 TGTAGCCATGCAATTCCAAAG 57.127 42.857 0.00 0.00 0.00 2.77
188 189 3.164268 TGTAGCCATGCAATTCCAAAGT 58.836 40.909 0.00 0.00 0.00 2.66
189 190 3.577848 TGTAGCCATGCAATTCCAAAGTT 59.422 39.130 0.00 0.00 0.00 2.66
190 191 3.775261 AGCCATGCAATTCCAAAGTTT 57.225 38.095 0.00 0.00 0.00 2.66
191 192 4.888326 AGCCATGCAATTCCAAAGTTTA 57.112 36.364 0.00 0.00 0.00 2.01
192 193 5.425196 AGCCATGCAATTCCAAAGTTTAT 57.575 34.783 0.00 0.00 0.00 1.40
193 194 5.422145 AGCCATGCAATTCCAAAGTTTATC 58.578 37.500 0.00 0.00 0.00 1.75
194 195 5.046448 AGCCATGCAATTCCAAAGTTTATCA 60.046 36.000 0.00 0.00 0.00 2.15
195 196 5.818857 GCCATGCAATTCCAAAGTTTATCAT 59.181 36.000 0.00 0.00 0.00 2.45
196 197 6.018507 GCCATGCAATTCCAAAGTTTATCATC 60.019 38.462 0.00 0.00 0.00 2.92
197 198 6.480981 CCATGCAATTCCAAAGTTTATCATCC 59.519 38.462 0.00 0.00 0.00 3.51
198 199 6.602410 TGCAATTCCAAAGTTTATCATCCA 57.398 33.333 0.00 0.00 0.00 3.41
199 200 7.002250 TGCAATTCCAAAGTTTATCATCCAA 57.998 32.000 0.00 0.00 0.00 3.53
200 201 7.448420 TGCAATTCCAAAGTTTATCATCCAAA 58.552 30.769 0.00 0.00 0.00 3.28
201 202 7.387397 TGCAATTCCAAAGTTTATCATCCAAAC 59.613 33.333 0.00 0.00 36.37 2.93
202 203 7.148423 GCAATTCCAAAGTTTATCATCCAAACC 60.148 37.037 0.00 0.00 36.71 3.27
203 204 7.797121 ATTCCAAAGTTTATCATCCAAACCT 57.203 32.000 0.00 0.00 36.71 3.50
204 205 6.588719 TCCAAAGTTTATCATCCAAACCTG 57.411 37.500 0.00 0.00 36.71 4.00
205 206 6.310941 TCCAAAGTTTATCATCCAAACCTGA 58.689 36.000 0.00 0.00 36.71 3.86
206 207 6.953520 TCCAAAGTTTATCATCCAAACCTGAT 59.046 34.615 0.00 0.00 36.71 2.90
207 208 7.454380 TCCAAAGTTTATCATCCAAACCTGATT 59.546 33.333 0.00 0.00 36.71 2.57
208 209 8.096414 CCAAAGTTTATCATCCAAACCTGATTT 58.904 33.333 0.00 0.00 36.71 2.17
209 210 8.928733 CAAAGTTTATCATCCAAACCTGATTTG 58.071 33.333 0.00 0.00 46.32 2.32
221 222 6.758254 CAAACCTGATTTGGTATTGAAACCT 58.242 36.000 0.00 0.00 43.52 3.50
222 223 6.590234 AACCTGATTTGGTATTGAAACCTC 57.410 37.500 0.00 0.00 39.83 3.85
223 224 5.640147 ACCTGATTTGGTATTGAAACCTCA 58.360 37.500 0.00 0.00 40.44 3.86
224 225 5.711976 ACCTGATTTGGTATTGAAACCTCAG 59.288 40.000 4.58 4.58 40.44 3.35
225 226 5.945784 CCTGATTTGGTATTGAAACCTCAGA 59.054 40.000 10.64 0.00 39.77 3.27
226 227 6.094603 CCTGATTTGGTATTGAAACCTCAGAG 59.905 42.308 10.64 0.00 39.77 3.35
227 228 5.945784 TGATTTGGTATTGAAACCTCAGAGG 59.054 40.000 15.72 15.72 42.49 3.69
228 229 3.350219 TGGTATTGAAACCTCAGAGGC 57.650 47.619 17.31 0.67 39.63 4.70
229 230 2.642311 TGGTATTGAAACCTCAGAGGCA 59.358 45.455 17.31 3.64 39.63 4.75
230 231 3.266772 TGGTATTGAAACCTCAGAGGCAT 59.733 43.478 17.31 5.25 39.63 4.40
231 232 4.263905 TGGTATTGAAACCTCAGAGGCATT 60.264 41.667 17.31 11.94 39.63 3.56
232 233 4.706962 GGTATTGAAACCTCAGAGGCATTT 59.293 41.667 17.31 10.47 39.63 2.32
233 234 5.163612 GGTATTGAAACCTCAGAGGCATTTC 60.164 44.000 17.31 18.57 39.63 2.17
234 235 3.507162 TGAAACCTCAGAGGCATTTCA 57.493 42.857 22.81 22.81 39.63 2.69
235 236 3.831323 TGAAACCTCAGAGGCATTTCAA 58.169 40.909 23.78 13.01 37.40 2.69
236 237 3.822735 TGAAACCTCAGAGGCATTTCAAG 59.177 43.478 23.78 0.00 37.40 3.02
237 238 2.503895 ACCTCAGAGGCATTTCAAGG 57.496 50.000 17.31 0.00 39.63 3.61
238 239 1.005215 ACCTCAGAGGCATTTCAAGGG 59.995 52.381 17.31 0.00 39.63 3.95
239 240 1.101331 CTCAGAGGCATTTCAAGGGC 58.899 55.000 0.00 0.00 35.31 5.19
245 246 2.028420 GGCATTTCAAGGGCCAATTC 57.972 50.000 6.18 0.00 46.92 2.17
246 247 1.278699 GGCATTTCAAGGGCCAATTCA 59.721 47.619 6.18 0.00 46.92 2.57
247 248 2.624636 GCATTTCAAGGGCCAATTCAG 58.375 47.619 6.18 0.00 0.00 3.02
248 249 2.027837 GCATTTCAAGGGCCAATTCAGT 60.028 45.455 6.18 0.00 0.00 3.41
249 250 3.592059 CATTTCAAGGGCCAATTCAGTG 58.408 45.455 6.18 0.00 0.00 3.66
250 251 2.673775 TTCAAGGGCCAATTCAGTGA 57.326 45.000 6.18 0.00 0.00 3.41
251 252 2.673775 TCAAGGGCCAATTCAGTGAA 57.326 45.000 8.27 8.27 0.00 3.18
252 253 2.238521 TCAAGGGCCAATTCAGTGAAC 58.761 47.619 7.96 0.00 0.00 3.18
253 254 1.962807 CAAGGGCCAATTCAGTGAACA 59.037 47.619 7.96 0.00 0.00 3.18
254 255 2.364970 CAAGGGCCAATTCAGTGAACAA 59.635 45.455 7.96 0.00 0.00 2.83
255 256 1.963515 AGGGCCAATTCAGTGAACAAC 59.036 47.619 7.96 0.00 0.00 3.32
256 257 1.000843 GGGCCAATTCAGTGAACAACC 59.999 52.381 7.96 7.53 0.00 3.77
257 258 1.686052 GGCCAATTCAGTGAACAACCA 59.314 47.619 7.96 0.00 0.00 3.67
258 259 2.102252 GGCCAATTCAGTGAACAACCAA 59.898 45.455 7.96 0.00 0.00 3.67
259 260 3.431486 GGCCAATTCAGTGAACAACCAAA 60.431 43.478 7.96 0.00 0.00 3.28
260 261 3.555547 GCCAATTCAGTGAACAACCAAAC 59.444 43.478 7.96 0.00 0.00 2.93
261 262 4.753233 CCAATTCAGTGAACAACCAAACA 58.247 39.130 7.96 0.00 0.00 2.83
262 263 5.358922 CCAATTCAGTGAACAACCAAACAT 58.641 37.500 7.96 0.00 0.00 2.71
263 264 5.234757 CCAATTCAGTGAACAACCAAACATG 59.765 40.000 7.96 0.00 0.00 3.21
264 265 3.435105 TCAGTGAACAACCAAACATGC 57.565 42.857 0.00 0.00 0.00 4.06
265 266 2.118683 CAGTGAACAACCAAACATGCG 58.881 47.619 0.00 0.00 0.00 4.73
266 267 2.020720 AGTGAACAACCAAACATGCGA 58.979 42.857 0.00 0.00 0.00 5.10
267 268 2.425312 AGTGAACAACCAAACATGCGAA 59.575 40.909 0.00 0.00 0.00 4.70
268 269 2.533942 GTGAACAACCAAACATGCGAAC 59.466 45.455 0.00 0.00 0.00 3.95
269 270 2.425312 TGAACAACCAAACATGCGAACT 59.575 40.909 0.00 0.00 0.00 3.01
270 271 2.774439 ACAACCAAACATGCGAACTC 57.226 45.000 0.00 0.00 0.00 3.01
271 272 1.002900 ACAACCAAACATGCGAACTCG 60.003 47.619 0.00 0.00 43.27 4.18
272 273 1.002900 CAACCAAACATGCGAACTCGT 60.003 47.619 0.51 0.00 42.22 4.18
273 274 2.157834 ACCAAACATGCGAACTCGTA 57.842 45.000 0.51 0.00 42.22 3.43
274 275 2.695359 ACCAAACATGCGAACTCGTAT 58.305 42.857 0.51 0.00 45.16 3.06
275 276 3.071479 ACCAAACATGCGAACTCGTATT 58.929 40.909 0.00 0.00 42.53 1.89
276 277 3.124636 ACCAAACATGCGAACTCGTATTC 59.875 43.478 0.00 0.00 42.53 1.75
277 278 3.124466 CCAAACATGCGAACTCGTATTCA 59.876 43.478 0.00 0.00 42.53 2.57
278 279 4.201812 CCAAACATGCGAACTCGTATTCAT 60.202 41.667 0.00 0.00 42.53 2.57
279 280 4.520743 AACATGCGAACTCGTATTCATG 57.479 40.909 12.78 12.78 42.53 3.07
280 281 2.285220 ACATGCGAACTCGTATTCATGC 59.715 45.455 13.74 0.33 42.53 4.06
281 282 1.286501 TGCGAACTCGTATTCATGCC 58.713 50.000 0.51 0.00 42.22 4.40
282 283 1.286501 GCGAACTCGTATTCATGCCA 58.713 50.000 0.51 0.00 42.22 4.92
283 284 1.867233 GCGAACTCGTATTCATGCCAT 59.133 47.619 0.51 0.00 42.22 4.40
284 285 2.287915 GCGAACTCGTATTCATGCCATT 59.712 45.455 0.51 0.00 42.22 3.16
285 286 3.242739 GCGAACTCGTATTCATGCCATTT 60.243 43.478 0.51 0.00 42.22 2.32
286 287 4.518217 CGAACTCGTATTCATGCCATTTC 58.482 43.478 0.00 0.00 34.11 2.17
287 288 4.033932 CGAACTCGTATTCATGCCATTTCA 59.966 41.667 0.00 0.00 34.11 2.69
288 289 5.490139 AACTCGTATTCATGCCATTTCAG 57.510 39.130 0.00 0.00 0.00 3.02
289 290 4.517285 ACTCGTATTCATGCCATTTCAGT 58.483 39.130 0.00 0.00 0.00 3.41
290 291 4.943705 ACTCGTATTCATGCCATTTCAGTT 59.056 37.500 0.00 0.00 0.00 3.16
291 292 5.065218 ACTCGTATTCATGCCATTTCAGTTC 59.935 40.000 0.00 0.00 0.00 3.01
292 293 4.335315 TCGTATTCATGCCATTTCAGTTCC 59.665 41.667 0.00 0.00 0.00 3.62
293 294 4.336433 CGTATTCATGCCATTTCAGTTCCT 59.664 41.667 0.00 0.00 0.00 3.36
294 295 4.996788 ATTCATGCCATTTCAGTTCCTC 57.003 40.909 0.00 0.00 0.00 3.71
295 296 3.438216 TCATGCCATTTCAGTTCCTCA 57.562 42.857 0.00 0.00 0.00 3.86
296 297 3.972133 TCATGCCATTTCAGTTCCTCAT 58.028 40.909 0.00 0.00 0.00 2.90
297 298 4.346730 TCATGCCATTTCAGTTCCTCATT 58.653 39.130 0.00 0.00 0.00 2.57
298 299 4.158949 TCATGCCATTTCAGTTCCTCATTG 59.841 41.667 0.00 0.00 0.00 2.82
299 300 3.765381 TGCCATTTCAGTTCCTCATTGA 58.235 40.909 0.00 0.00 0.00 2.57
300 301 4.151121 TGCCATTTCAGTTCCTCATTGAA 58.849 39.130 0.00 0.00 0.00 2.69
301 302 4.773674 TGCCATTTCAGTTCCTCATTGAAT 59.226 37.500 0.00 0.00 31.54 2.57
302 303 5.246656 TGCCATTTCAGTTCCTCATTGAATT 59.753 36.000 0.00 0.00 31.54 2.17
303 304 5.579511 GCCATTTCAGTTCCTCATTGAATTG 59.420 40.000 0.00 0.00 34.37 2.32
304 305 6.103997 CCATTTCAGTTCCTCATTGAATTGG 58.896 40.000 10.92 10.92 41.75 3.16
305 306 6.071221 CCATTTCAGTTCCTCATTGAATTGGA 60.071 38.462 16.47 0.00 45.83 3.53
306 307 6.975196 TTTCAGTTCCTCATTGAATTGGAA 57.025 33.333 5.59 5.59 34.00 3.53
307 308 7.543359 TTTCAGTTCCTCATTGAATTGGAAT 57.457 32.000 11.08 1.58 40.20 3.01
308 309 7.543359 TTCAGTTCCTCATTGAATTGGAATT 57.457 32.000 11.08 6.00 40.20 2.17
309 310 7.543359 TCAGTTCCTCATTGAATTGGAATTT 57.457 32.000 11.08 3.27 40.20 1.82
310 311 7.605449 TCAGTTCCTCATTGAATTGGAATTTC 58.395 34.615 11.08 2.05 40.20 2.17
311 312 7.233144 TCAGTTCCTCATTGAATTGGAATTTCA 59.767 33.333 11.08 0.00 40.20 2.69
312 313 7.544566 CAGTTCCTCATTGAATTGGAATTTCAG 59.455 37.037 11.08 0.62 40.20 3.02
313 314 7.234166 AGTTCCTCATTGAATTGGAATTTCAGT 59.766 33.333 11.08 0.00 40.20 3.41
314 315 7.161773 TCCTCATTGAATTGGAATTTCAGTC 57.838 36.000 0.00 0.00 0.00 3.51
315 316 6.153340 TCCTCATTGAATTGGAATTTCAGTCC 59.847 38.462 0.00 0.00 35.55 3.85
316 317 6.071221 CCTCATTGAATTGGAATTTCAGTCCA 60.071 38.462 0.00 0.00 43.57 4.02
326 327 6.851609 TGGAATTTCAGTCCAATTCAATACG 58.148 36.000 7.49 0.00 42.29 3.06
327 328 6.127758 TGGAATTTCAGTCCAATTCAATACGG 60.128 38.462 7.49 0.00 42.29 4.02
328 329 6.094881 GGAATTTCAGTCCAATTCAATACGGA 59.905 38.462 7.49 0.00 40.88 4.69
329 330 6.683974 ATTTCAGTCCAATTCAATACGGAG 57.316 37.500 0.00 0.00 0.00 4.63
330 331 3.531538 TCAGTCCAATTCAATACGGAGC 58.468 45.455 0.00 0.00 0.00 4.70
331 332 3.197766 TCAGTCCAATTCAATACGGAGCT 59.802 43.478 0.00 0.00 0.00 4.09
332 333 3.557595 CAGTCCAATTCAATACGGAGCTC 59.442 47.826 4.71 4.71 0.00 4.09
333 334 3.452627 AGTCCAATTCAATACGGAGCTCT 59.547 43.478 14.64 0.00 0.00 4.09
334 335 4.080863 AGTCCAATTCAATACGGAGCTCTT 60.081 41.667 14.64 3.54 0.00 2.85
335 336 4.034510 GTCCAATTCAATACGGAGCTCTTG 59.965 45.833 14.64 10.28 0.00 3.02
336 337 4.081142 TCCAATTCAATACGGAGCTCTTGA 60.081 41.667 14.64 12.55 0.00 3.02
337 338 4.635765 CCAATTCAATACGGAGCTCTTGAA 59.364 41.667 23.30 23.30 40.66 2.69
338 339 5.297776 CCAATTCAATACGGAGCTCTTGAAT 59.702 40.000 24.94 24.94 45.45 2.57
339 340 6.483307 CCAATTCAATACGGAGCTCTTGAATA 59.517 38.462 28.14 13.20 43.76 1.75
340 341 7.348201 CAATTCAATACGGAGCTCTTGAATAC 58.652 38.462 28.14 7.68 43.76 1.89
341 342 4.607955 TCAATACGGAGCTCTTGAATACG 58.392 43.478 14.64 9.17 0.00 3.06
342 343 3.644884 ATACGGAGCTCTTGAATACGG 57.355 47.619 14.64 0.00 0.00 4.02
343 344 1.471119 ACGGAGCTCTTGAATACGGA 58.529 50.000 14.64 0.00 0.00 4.69
344 345 1.134560 ACGGAGCTCTTGAATACGGAC 59.865 52.381 14.64 0.00 0.00 4.79
345 346 1.134367 CGGAGCTCTTGAATACGGACA 59.866 52.381 14.64 0.00 0.00 4.02
346 347 2.223829 CGGAGCTCTTGAATACGGACAT 60.224 50.000 14.64 0.00 0.00 3.06
347 348 3.385577 GGAGCTCTTGAATACGGACATC 58.614 50.000 14.64 0.00 0.00 3.06
348 349 3.385577 GAGCTCTTGAATACGGACATCC 58.614 50.000 6.43 0.00 0.00 3.51
349 350 2.766263 AGCTCTTGAATACGGACATCCA 59.234 45.455 0.00 0.00 35.14 3.41
350 351 3.197766 AGCTCTTGAATACGGACATCCAA 59.802 43.478 0.00 0.00 35.14 3.53
351 352 3.938963 GCTCTTGAATACGGACATCCAAA 59.061 43.478 0.00 0.00 35.14 3.28
352 353 4.201822 GCTCTTGAATACGGACATCCAAAC 60.202 45.833 0.00 0.00 35.14 2.93
353 354 4.900684 TCTTGAATACGGACATCCAAACA 58.099 39.130 0.00 0.00 35.14 2.83
354 355 5.309638 TCTTGAATACGGACATCCAAACAA 58.690 37.500 0.00 0.00 35.14 2.83
355 356 5.765677 TCTTGAATACGGACATCCAAACAAA 59.234 36.000 0.00 0.00 35.14 2.83
356 357 5.621197 TGAATACGGACATCCAAACAAAG 57.379 39.130 0.00 0.00 35.14 2.77
357 358 4.083003 TGAATACGGACATCCAAACAAAGC 60.083 41.667 0.00 0.00 35.14 3.51
358 359 1.686355 ACGGACATCCAAACAAAGCA 58.314 45.000 0.00 0.00 35.14 3.91
374 375 8.602328 CAAACAAAGCATTAGTGAAATGAACAA 58.398 29.630 2.01 0.00 46.81 2.83
427 428 7.100409 AGCAACTAGAGAAGGTAAAATGACTC 58.900 38.462 0.00 0.00 0.00 3.36
430 431 7.176589 ACTAGAGAAGGTAAAATGACTCAGG 57.823 40.000 0.00 0.00 0.00 3.86
436 437 4.652822 AGGTAAAATGACTCAGGAACCAC 58.347 43.478 0.00 0.00 0.00 4.16
443 444 5.568620 ATGACTCAGGAACCACTTTACTT 57.431 39.130 0.00 0.00 0.00 2.24
451 452 3.819337 GGAACCACTTTACTTTGAGGGAC 59.181 47.826 0.00 0.00 0.00 4.46
454 455 3.458487 ACCACTTTACTTTGAGGGACACT 59.542 43.478 0.00 0.00 0.00 3.55
465 466 6.670027 ACTTTGAGGGACACTCTAGACATATT 59.330 38.462 6.23 0.00 46.72 1.28
467 468 4.822350 TGAGGGACACTCTAGACATATTCG 59.178 45.833 6.23 0.00 46.72 3.34
472 473 1.887198 ACTCTAGACATATTCGCCCCG 59.113 52.381 0.00 0.00 0.00 5.73
475 476 1.611977 CTAGACATATTCGCCCCGTGA 59.388 52.381 0.00 0.00 0.00 4.35
495 496 4.847444 GGCCTCGGGAAGCAGCTC 62.847 72.222 0.00 0.00 0.00 4.09
497 498 3.393970 CCTCGGGAAGCAGCTCCA 61.394 66.667 0.00 0.00 37.20 3.86
498 499 2.186384 CTCGGGAAGCAGCTCCAG 59.814 66.667 0.00 0.00 37.20 3.86
499 500 2.283894 TCGGGAAGCAGCTCCAGA 60.284 61.111 0.00 2.45 37.35 3.86
503 504 1.748500 GGAAGCAGCTCCAGAAGGC 60.749 63.158 0.00 0.00 35.36 4.35
510 511 3.333219 CTCCAGAAGGCTGCCCCA 61.333 66.667 16.57 0.00 40.91 4.96
598 599 1.925847 CTCGTGAAGCTCTGAAGATGC 59.074 52.381 0.00 0.00 0.00 3.91
602 603 0.919981 GAAGCTCTGAAGATGCGTCG 59.080 55.000 0.00 0.00 0.00 5.12
607 608 0.733909 TCTGAAGATGCGTCGTGCTG 60.734 55.000 0.00 0.00 46.63 4.41
659 660 1.982938 GCAGACGGACCTGGGTACT 60.983 63.158 0.00 0.00 34.82 2.73
661 662 1.000107 AGACGGACCTGGGTACTCC 60.000 63.158 0.00 0.00 0.00 3.85
672 673 0.754587 GGGTACTCCTAGTCCCACGG 60.755 65.000 8.72 0.00 36.33 4.94
673 674 0.754587 GGTACTCCTAGTCCCACGGG 60.755 65.000 0.00 0.00 0.00 5.28
675 676 2.578586 TACTCCTAGTCCCACGGGCC 62.579 65.000 0.00 0.00 34.68 5.80
676 677 4.791069 TCCTAGTCCCACGGGCCC 62.791 72.222 13.57 13.57 34.68 5.80
679 680 2.529643 TAGTCCCACGGGCCCAAA 60.530 61.111 24.92 0.00 34.68 3.28
680 681 2.814913 CTAGTCCCACGGGCCCAAAC 62.815 65.000 24.92 11.62 34.68 2.93
681 682 4.589675 GTCCCACGGGCCCAAACA 62.590 66.667 24.92 0.00 34.68 2.83
682 683 3.585428 TCCCACGGGCCCAAACAT 61.585 61.111 24.92 0.00 34.68 2.71
699 700 3.598019 ACATCCATGTGCATGTTTTCC 57.402 42.857 10.76 0.00 40.03 3.13
701 702 3.194116 ACATCCATGTGCATGTTTTCCTC 59.806 43.478 10.76 0.00 40.03 3.71
726 727 6.128063 CCACCAATTTTCTCTCTCACAATCTC 60.128 42.308 0.00 0.00 0.00 2.75
746 747 0.677731 ACATGCGGGATCCACACTTG 60.678 55.000 15.23 12.21 0.00 3.16
753 754 1.405121 GGGATCCACACTTGTACGGTC 60.405 57.143 15.23 0.00 0.00 4.79
757 758 3.648339 TCCACACTTGTACGGTCTTAC 57.352 47.619 0.00 0.00 0.00 2.34
759 760 3.005050 TCCACACTTGTACGGTCTTACAG 59.995 47.826 0.00 0.00 33.50 2.74
766 767 1.547372 GTACGGTCTTACAGGGAGCAA 59.453 52.381 0.00 0.00 0.00 3.91
789 790 0.173708 GAGACTTAGCCAGGACCGTG 59.826 60.000 0.00 0.00 0.00 4.94
793 794 0.320374 CTTAGCCAGGACCGTGTTGA 59.680 55.000 0.00 0.00 0.00 3.18
805 806 2.288579 ACCGTGTTGAAGCGTATTCTCA 60.289 45.455 4.52 2.14 0.00 3.27
842 844 3.637714 GCACTCCGCGAGTTTGAA 58.362 55.556 8.23 0.00 41.37 2.69
843 845 1.204312 GCACTCCGCGAGTTTGAAC 59.796 57.895 8.23 0.00 41.37 3.18
844 846 1.495584 GCACTCCGCGAGTTTGAACA 61.496 55.000 8.23 0.00 41.37 3.18
845 847 0.232303 CACTCCGCGAGTTTGAACAC 59.768 55.000 8.23 0.00 41.37 3.32
846 848 0.878961 ACTCCGCGAGTTTGAACACC 60.879 55.000 8.23 0.00 40.28 4.16
847 849 0.878523 CTCCGCGAGTTTGAACACCA 60.879 55.000 8.23 0.00 0.00 4.17
848 850 0.250124 TCCGCGAGTTTGAACACCAT 60.250 50.000 8.23 0.00 0.00 3.55
850 852 0.110238 CGCGAGTTTGAACACCATGG 60.110 55.000 11.19 11.19 0.00 3.66
851 853 0.951558 GCGAGTTTGAACACCATGGT 59.048 50.000 13.00 13.00 0.00 3.55
871 873 3.592059 GTTTACATGCCGGAGAGTACAA 58.408 45.455 5.05 0.00 0.00 2.41
877 879 1.899814 TGCCGGAGAGTACAATGACTT 59.100 47.619 5.05 0.00 0.00 3.01
878 880 3.093814 TGCCGGAGAGTACAATGACTTA 58.906 45.455 5.05 0.00 0.00 2.24
951 953 0.315251 GTTTCCAACTTCCCAGCTGC 59.685 55.000 8.66 0.00 0.00 5.25
1019 1021 1.380785 CAGGCTCCATGGTTGGCAT 60.381 57.895 25.98 17.84 43.29 4.40
1110 1112 1.820481 GCTCCTCGCCTACTCTCGT 60.820 63.158 0.00 0.00 0.00 4.18
1540 1542 0.098728 CGGTGATTGTTTGGATCGCC 59.901 55.000 6.62 6.62 46.08 5.54
1612 1614 2.019984 GCGCAAGGAGGATTCTTGAAT 58.980 47.619 0.30 0.00 38.28 2.57
1699 1701 8.613482 GTGAAGATTTTATAGCTTTGGGTACTC 58.387 37.037 0.00 0.00 0.00 2.59
1765 1767 2.972713 ACTTTGCTGGTAGTCCTCTCAA 59.027 45.455 0.00 0.00 34.23 3.02
2288 2290 4.083643 CCAGACAACAGTGATTGACATGTC 60.084 45.833 19.27 19.27 38.00 3.06
2289 2291 4.753610 CAGACAACAGTGATTGACATGTCT 59.246 41.667 25.55 7.38 43.04 3.41
2290 2292 4.993584 AGACAACAGTGATTGACATGTCTC 59.006 41.667 25.55 16.37 40.85 3.36
2291 2293 4.067896 ACAACAGTGATTGACATGTCTCC 58.932 43.478 25.55 14.74 33.57 3.71
2292 2294 4.202398 ACAACAGTGATTGACATGTCTCCT 60.202 41.667 25.55 10.78 33.57 3.69
2293 2295 4.630644 ACAGTGATTGACATGTCTCCTT 57.369 40.909 25.55 8.52 0.00 3.36
2294 2296 4.573900 ACAGTGATTGACATGTCTCCTTC 58.426 43.478 25.55 16.27 0.00 3.46
2295 2297 3.615937 CAGTGATTGACATGTCTCCTTCG 59.384 47.826 25.55 6.36 0.00 3.79
2296 2298 3.511540 AGTGATTGACATGTCTCCTTCGA 59.488 43.478 25.55 1.39 0.00 3.71
2297 2299 4.161189 AGTGATTGACATGTCTCCTTCGAT 59.839 41.667 25.55 4.97 0.00 3.59
2298 2300 4.269603 GTGATTGACATGTCTCCTTCGATG 59.730 45.833 25.55 0.00 0.00 3.84
2299 2301 2.967599 TGACATGTCTCCTTCGATGG 57.032 50.000 25.55 11.07 0.00 3.51
2300 2302 1.482182 TGACATGTCTCCTTCGATGGG 59.518 52.381 25.55 7.95 0.00 4.00
2301 2303 0.833287 ACATGTCTCCTTCGATGGGG 59.167 55.000 16.68 13.99 0.00 4.96
2302 2304 0.107456 CATGTCTCCTTCGATGGGGG 59.893 60.000 16.70 7.85 0.00 5.40
2303 2305 0.031111 ATGTCTCCTTCGATGGGGGA 60.031 55.000 16.70 10.11 0.00 4.81
2304 2306 0.031111 TGTCTCCTTCGATGGGGGAT 60.031 55.000 16.70 0.00 35.60 3.85
2305 2307 1.219469 TGTCTCCTTCGATGGGGGATA 59.781 52.381 16.70 8.53 35.60 2.59
2306 2308 2.158158 TGTCTCCTTCGATGGGGGATAT 60.158 50.000 16.70 0.00 35.60 1.63
2307 2309 2.234908 GTCTCCTTCGATGGGGGATATG 59.765 54.545 16.70 0.81 35.60 1.78
2308 2310 2.111792 TCTCCTTCGATGGGGGATATGA 59.888 50.000 16.70 0.00 0.00 2.15
2309 2311 3.110705 CTCCTTCGATGGGGGATATGAT 58.889 50.000 16.68 0.00 0.00 2.45
2310 2312 2.840038 TCCTTCGATGGGGGATATGATG 59.160 50.000 16.68 0.00 0.00 3.07
2311 2313 2.573462 CCTTCGATGGGGGATATGATGT 59.427 50.000 9.48 0.00 0.00 3.06
2312 2314 3.009473 CCTTCGATGGGGGATATGATGTT 59.991 47.826 9.48 0.00 0.00 2.71
2313 2315 3.701205 TCGATGGGGGATATGATGTTG 57.299 47.619 0.00 0.00 0.00 3.33
2314 2316 2.305635 TCGATGGGGGATATGATGTTGG 59.694 50.000 0.00 0.00 0.00 3.77
2315 2317 2.305635 CGATGGGGGATATGATGTTGGA 59.694 50.000 0.00 0.00 0.00 3.53
2316 2318 3.620719 CGATGGGGGATATGATGTTGGAG 60.621 52.174 0.00 0.00 0.00 3.86
2317 2319 2.065007 TGGGGGATATGATGTTGGAGG 58.935 52.381 0.00 0.00 0.00 4.30
2318 2320 1.272147 GGGGGATATGATGTTGGAGGC 60.272 57.143 0.00 0.00 0.00 4.70
2319 2321 1.272147 GGGGATATGATGTTGGAGGCC 60.272 57.143 0.00 0.00 0.00 5.19
2320 2322 1.611673 GGGATATGATGTTGGAGGCCG 60.612 57.143 0.00 0.00 0.00 6.13
2321 2323 1.611673 GGATATGATGTTGGAGGCCGG 60.612 57.143 0.00 0.00 0.00 6.13
2322 2324 1.072331 GATATGATGTTGGAGGCCGGT 59.928 52.381 1.90 0.00 0.00 5.28
2323 2325 0.180171 TATGATGTTGGAGGCCGGTG 59.820 55.000 1.90 0.00 0.00 4.94
2324 2326 1.561769 ATGATGTTGGAGGCCGGTGA 61.562 55.000 1.90 0.00 0.00 4.02
2325 2327 1.450312 GATGTTGGAGGCCGGTGAG 60.450 63.158 1.90 0.00 0.00 3.51
2326 2328 1.899437 GATGTTGGAGGCCGGTGAGA 61.899 60.000 1.90 0.00 0.00 3.27
2327 2329 1.903877 ATGTTGGAGGCCGGTGAGAG 61.904 60.000 1.90 0.00 0.00 3.20
2328 2330 3.706373 TTGGAGGCCGGTGAGAGC 61.706 66.667 1.90 0.00 0.00 4.09
2336 2338 2.668212 CGGTGAGAGCGGCCAAAA 60.668 61.111 2.24 0.00 35.16 2.44
2337 2339 2.258013 CGGTGAGAGCGGCCAAAAA 61.258 57.895 2.24 0.00 35.16 1.94
2338 2340 1.586154 CGGTGAGAGCGGCCAAAAAT 61.586 55.000 2.24 0.00 35.16 1.82
2339 2341 0.109132 GGTGAGAGCGGCCAAAAATG 60.109 55.000 2.24 0.00 0.00 2.32
2340 2342 0.109132 GTGAGAGCGGCCAAAAATGG 60.109 55.000 2.24 0.00 0.00 3.16
2341 2343 0.539438 TGAGAGCGGCCAAAAATGGT 60.539 50.000 2.24 0.00 0.00 3.55
2342 2344 0.603065 GAGAGCGGCCAAAAATGGTT 59.397 50.000 2.24 0.00 0.00 3.67
2343 2345 0.318120 AGAGCGGCCAAAAATGGTTG 59.682 50.000 2.24 0.00 0.00 3.77
2344 2346 0.316841 GAGCGGCCAAAAATGGTTGA 59.683 50.000 2.24 0.00 0.00 3.18
2345 2347 0.033366 AGCGGCCAAAAATGGTTGAC 59.967 50.000 2.24 0.00 0.00 3.18
2346 2348 0.249657 GCGGCCAAAAATGGTTGACA 60.250 50.000 2.24 0.00 0.00 3.58
2347 2349 1.808133 GCGGCCAAAAATGGTTGACAA 60.808 47.619 2.24 0.00 0.00 3.18
2348 2350 2.765122 CGGCCAAAAATGGTTGACAAT 58.235 42.857 2.24 0.00 0.00 2.71
2349 2351 3.137533 CGGCCAAAAATGGTTGACAATT 58.862 40.909 2.24 0.00 0.00 2.32
2350 2352 3.059051 CGGCCAAAAATGGTTGACAATTG 60.059 43.478 2.24 3.24 0.00 2.32
2351 2353 3.882288 GGCCAAAAATGGTTGACAATTGT 59.118 39.130 11.78 11.78 0.00 2.71
2352 2354 5.059833 GGCCAAAAATGGTTGACAATTGTA 58.940 37.500 11.95 0.00 0.00 2.41
2353 2355 5.704978 GGCCAAAAATGGTTGACAATTGTAT 59.295 36.000 11.95 0.00 0.00 2.29
2354 2356 6.348376 GGCCAAAAATGGTTGACAATTGTATG 60.348 38.462 11.95 0.00 0.00 2.39
2355 2357 6.348376 GCCAAAAATGGTTGACAATTGTATGG 60.348 38.462 11.95 8.18 30.30 2.74
2356 2358 6.149142 CCAAAAATGGTTGACAATTGTATGGG 59.851 38.462 11.95 0.00 0.00 4.00
2357 2359 4.470334 AATGGTTGACAATTGTATGGGC 57.530 40.909 11.95 0.00 0.00 5.36
2358 2360 3.168035 TGGTTGACAATTGTATGGGCT 57.832 42.857 11.95 0.00 0.00 5.19
2359 2361 3.088532 TGGTTGACAATTGTATGGGCTC 58.911 45.455 11.95 0.00 0.00 4.70
2360 2362 3.245229 TGGTTGACAATTGTATGGGCTCT 60.245 43.478 11.95 0.00 0.00 4.09
2361 2363 3.129287 GGTTGACAATTGTATGGGCTCTG 59.871 47.826 11.95 0.00 0.00 3.35
2362 2364 3.719268 TGACAATTGTATGGGCTCTGT 57.281 42.857 11.95 0.00 0.00 3.41
2363 2365 4.835284 TGACAATTGTATGGGCTCTGTA 57.165 40.909 11.95 0.00 0.00 2.74
2364 2366 4.769688 TGACAATTGTATGGGCTCTGTAG 58.230 43.478 11.95 0.00 0.00 2.74
2365 2367 4.225042 TGACAATTGTATGGGCTCTGTAGT 59.775 41.667 11.95 0.00 0.00 2.73
2366 2368 5.179452 ACAATTGTATGGGCTCTGTAGTT 57.821 39.130 9.97 0.00 0.00 2.24
2367 2369 5.186198 ACAATTGTATGGGCTCTGTAGTTC 58.814 41.667 9.97 0.00 0.00 3.01
2368 2370 5.045578 ACAATTGTATGGGCTCTGTAGTTCT 60.046 40.000 9.97 0.00 0.00 3.01
2369 2371 5.700402 ATTGTATGGGCTCTGTAGTTCTT 57.300 39.130 0.00 0.00 0.00 2.52
2370 2372 4.737855 TGTATGGGCTCTGTAGTTCTTC 57.262 45.455 0.00 0.00 0.00 2.87
2371 2373 4.353777 TGTATGGGCTCTGTAGTTCTTCT 58.646 43.478 0.00 0.00 0.00 2.85
2372 2374 4.402793 TGTATGGGCTCTGTAGTTCTTCTC 59.597 45.833 0.00 0.00 0.00 2.87
2373 2375 2.889512 TGGGCTCTGTAGTTCTTCTCA 58.110 47.619 0.00 0.00 0.00 3.27
2374 2376 3.239449 TGGGCTCTGTAGTTCTTCTCAA 58.761 45.455 0.00 0.00 0.00 3.02
2375 2377 3.006967 TGGGCTCTGTAGTTCTTCTCAAC 59.993 47.826 0.00 0.00 0.00 3.18
2376 2378 3.591023 GGCTCTGTAGTTCTTCTCAACC 58.409 50.000 0.00 0.00 0.00 3.77
2377 2379 3.591023 GCTCTGTAGTTCTTCTCAACCC 58.409 50.000 0.00 0.00 0.00 4.11
2378 2380 3.006967 GCTCTGTAGTTCTTCTCAACCCA 59.993 47.826 0.00 0.00 0.00 4.51
2379 2381 4.561105 CTCTGTAGTTCTTCTCAACCCAC 58.439 47.826 0.00 0.00 0.00 4.61
2380 2382 3.005472 TCTGTAGTTCTTCTCAACCCACG 59.995 47.826 0.00 0.00 0.00 4.94
2381 2383 2.067013 GTAGTTCTTCTCAACCCACGC 58.933 52.381 0.00 0.00 0.00 5.34
2382 2384 0.759346 AGTTCTTCTCAACCCACGCT 59.241 50.000 0.00 0.00 0.00 5.07
2383 2385 0.868406 GTTCTTCTCAACCCACGCTG 59.132 55.000 0.00 0.00 0.00 5.18
2384 2386 0.250295 TTCTTCTCAACCCACGCTGG 60.250 55.000 0.00 0.00 37.25 4.85
2394 2396 4.431131 CACGCTGGGGGCTTCCAT 62.431 66.667 0.00 0.00 39.13 3.41
2395 2397 4.431131 ACGCTGGGGGCTTCCATG 62.431 66.667 0.00 0.00 39.13 3.66
2397 2399 4.066139 GCTGGGGGCTTCCATGGT 62.066 66.667 12.58 0.00 36.05 3.55
2398 2400 2.772924 CTGGGGGCTTCCATGGTT 59.227 61.111 12.58 0.00 36.05 3.67
2399 2401 1.079073 CTGGGGGCTTCCATGGTTT 59.921 57.895 12.58 0.00 36.05 3.27
2400 2402 0.972471 CTGGGGGCTTCCATGGTTTC 60.972 60.000 12.58 1.47 36.05 2.78
2401 2403 1.685765 GGGGGCTTCCATGGTTTCC 60.686 63.158 12.58 10.66 37.22 3.13
2402 2404 2.052104 GGGGCTTCCATGGTTTCCG 61.052 63.158 12.58 0.00 35.00 4.30
2403 2405 1.304134 GGGCTTCCATGGTTTCCGT 60.304 57.895 12.58 0.00 0.00 4.69
2404 2406 1.595093 GGGCTTCCATGGTTTCCGTG 61.595 60.000 12.58 1.40 40.02 4.94
2405 2407 0.608035 GGCTTCCATGGTTTCCGTGA 60.608 55.000 12.58 0.00 42.73 4.35
2406 2408 1.463674 GCTTCCATGGTTTCCGTGAT 58.536 50.000 12.58 0.00 42.73 3.06
2407 2409 2.639065 GCTTCCATGGTTTCCGTGATA 58.361 47.619 12.58 0.00 42.73 2.15
2408 2410 2.614057 GCTTCCATGGTTTCCGTGATAG 59.386 50.000 12.58 7.10 42.73 2.08
2409 2411 2.325583 TCCATGGTTTCCGTGATAGC 57.674 50.000 12.58 0.00 42.73 2.97
2410 2412 1.837439 TCCATGGTTTCCGTGATAGCT 59.163 47.619 12.58 0.00 42.73 3.32
2411 2413 2.158957 TCCATGGTTTCCGTGATAGCTC 60.159 50.000 12.58 0.00 42.73 4.09
2412 2414 2.158900 CCATGGTTTCCGTGATAGCTCT 60.159 50.000 2.57 0.00 42.73 4.09
2413 2415 2.961526 TGGTTTCCGTGATAGCTCTC 57.038 50.000 0.00 0.00 0.00 3.20
2414 2416 2.457598 TGGTTTCCGTGATAGCTCTCT 58.542 47.619 0.00 0.00 0.00 3.10
2415 2417 2.832129 TGGTTTCCGTGATAGCTCTCTT 59.168 45.455 0.00 0.00 0.00 2.85
2416 2418 4.021229 TGGTTTCCGTGATAGCTCTCTTA 58.979 43.478 0.00 0.00 0.00 2.10
2417 2419 4.142227 TGGTTTCCGTGATAGCTCTCTTAC 60.142 45.833 0.00 0.00 0.00 2.34
2418 2420 3.965292 TTCCGTGATAGCTCTCTTACG 57.035 47.619 0.00 0.00 0.00 3.18
2419 2421 2.915349 TCCGTGATAGCTCTCTTACGT 58.085 47.619 9.94 0.00 0.00 3.57
2420 2422 2.871022 TCCGTGATAGCTCTCTTACGTC 59.129 50.000 9.94 0.00 0.00 4.34
2421 2423 2.348685 CCGTGATAGCTCTCTTACGTCG 60.349 54.545 9.94 0.00 0.00 5.12
2422 2424 2.284684 CGTGATAGCTCTCTTACGTCGT 59.715 50.000 2.21 2.21 0.00 4.34
2423 2425 3.242349 CGTGATAGCTCTCTTACGTCGTT 60.242 47.826 1.78 0.00 0.00 3.85
2441 2443 7.145985 ACGTCGTTATTGATGAAGCTATGTAT 58.854 34.615 0.00 0.00 0.00 2.29
2442 2444 7.652105 ACGTCGTTATTGATGAAGCTATGTATT 59.348 33.333 0.00 0.00 0.00 1.89
2452 2454 7.733047 TGATGAAGCTATGTATTTAGGGTAGGA 59.267 37.037 0.00 0.00 0.00 2.94
2474 2476 3.161557 GGACCTGTCCCAACTGCT 58.838 61.111 4.93 0.00 43.94 4.24
2491 2493 5.184892 ACTGCTCTATCCAAGGACATTTT 57.815 39.130 0.00 0.00 0.00 1.82
2523 2525 4.956085 TCACTTTTCAATCGACTTGGAGA 58.044 39.130 0.00 0.00 35.43 3.71
2528 2530 6.263168 ACTTTTCAATCGACTTGGAGATGTTT 59.737 34.615 0.00 0.00 35.43 2.83
2542 2544 4.551388 GAGATGTTTCACTCGACAGACTT 58.449 43.478 0.00 0.00 0.00 3.01
2555 2557 3.365465 CGACAGACTTGAAGACACTCGAT 60.365 47.826 0.00 0.00 0.00 3.59
2585 2587 4.194640 CAATCACTCGACCAAGATCCAAT 58.805 43.478 0.00 0.00 0.00 3.16
2593 2595 3.491619 CGACCAAGATCCAATCACTCGAT 60.492 47.826 0.00 0.00 0.00 3.59
2675 2677 7.136822 TGGTCATCATAGCACTTTATTAGGT 57.863 36.000 0.00 0.00 0.00 3.08
2861 2865 2.883386 ACGTAGGGCTATTACTTCCTCG 59.117 50.000 0.00 0.00 0.00 4.63
2884 2888 2.572104 AGAAGGGCCTGAACTCGTAAAT 59.428 45.455 6.92 0.00 0.00 1.40
2888 2892 2.168728 GGGCCTGAACTCGTAAATCTCT 59.831 50.000 0.84 0.00 0.00 3.10
2924 2928 3.326297 ACTCCATAGCTAAGATCTTGCCC 59.674 47.826 18.47 6.03 0.00 5.36
2932 2936 3.265479 GCTAAGATCTTGCCCCTCCATAT 59.735 47.826 18.47 0.00 0.00 1.78
3026 3032 4.273480 CGATTTATTGGAGGAGTTGCGATT 59.727 41.667 0.00 0.00 0.00 3.34
3219 3226 2.281484 GTCCTCTTGCGGCAACCA 60.281 61.111 12.11 0.18 0.00 3.67
3259 3266 0.105194 TCCTGTGTTGTCCTCCCTCA 60.105 55.000 0.00 0.00 0.00 3.86
3266 3273 3.636764 GTGTTGTCCTCCCTCATTGTTTT 59.363 43.478 0.00 0.00 0.00 2.43
3267 3274 4.099419 GTGTTGTCCTCCCTCATTGTTTTT 59.901 41.667 0.00 0.00 0.00 1.94
3352 3359 3.636231 CGGCCACCCCTCAAGTCA 61.636 66.667 2.24 0.00 0.00 3.41
3416 3423 2.780094 CGACTGGCTCCGCAGAGAT 61.780 63.158 0.00 0.00 43.39 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.954202 AGGGACAGAGTCGTGTAATTATCA 59.046 41.667 0.00 0.00 32.65 2.15
2 3 5.517322 AGGGACAGAGTCGTGTAATTATC 57.483 43.478 0.00 0.00 32.65 1.75
3 4 6.550108 ACATAGGGACAGAGTCGTGTAATTAT 59.450 38.462 0.00 0.00 32.65 1.28
5 6 4.710375 ACATAGGGACAGAGTCGTGTAATT 59.290 41.667 0.00 0.00 32.65 1.40
6 7 4.098044 CACATAGGGACAGAGTCGTGTAAT 59.902 45.833 0.00 0.00 32.65 1.89
7 8 3.442625 CACATAGGGACAGAGTCGTGTAA 59.557 47.826 0.00 0.00 32.65 2.41
8 9 3.014623 CACATAGGGACAGAGTCGTGTA 58.985 50.000 0.00 0.00 32.65 2.90
9 10 1.819288 CACATAGGGACAGAGTCGTGT 59.181 52.381 0.00 0.00 32.65 4.49
10 11 2.092323 TCACATAGGGACAGAGTCGTG 58.908 52.381 0.00 0.00 32.65 4.35
11 12 2.509166 TCACATAGGGACAGAGTCGT 57.491 50.000 0.00 0.00 32.65 4.34
12 13 5.713792 ATAATCACATAGGGACAGAGTCG 57.286 43.478 0.00 0.00 32.65 4.18
13 14 9.429359 CATAAATAATCACATAGGGACAGAGTC 57.571 37.037 0.00 0.00 0.00 3.36
14 15 9.159254 TCATAAATAATCACATAGGGACAGAGT 57.841 33.333 0.00 0.00 0.00 3.24
16 17 9.778741 GTTCATAAATAATCACATAGGGACAGA 57.221 33.333 0.00 0.00 0.00 3.41
17 18 9.559732 TGTTCATAAATAATCACATAGGGACAG 57.440 33.333 0.00 0.00 0.00 3.51
103 104 9.458727 AAATGAAATCTTCTCACATGTGACTAT 57.541 29.630 24.56 12.05 35.46 2.12
104 105 8.853077 AAATGAAATCTTCTCACATGTGACTA 57.147 30.769 24.56 12.79 35.46 2.59
105 106 7.756395 AAATGAAATCTTCTCACATGTGACT 57.244 32.000 24.56 4.58 35.46 3.41
106 107 8.697067 CAAAAATGAAATCTTCTCACATGTGAC 58.303 33.333 24.56 12.52 35.46 3.67
107 108 8.415553 ACAAAAATGAAATCTTCTCACATGTGA 58.584 29.630 26.33 26.33 38.06 3.58
108 109 8.484799 CACAAAAATGAAATCTTCTCACATGTG 58.515 33.333 20.18 20.18 0.00 3.21
109 110 8.199449 ACACAAAAATGAAATCTTCTCACATGT 58.801 29.630 0.00 0.00 0.00 3.21
110 111 8.583810 ACACAAAAATGAAATCTTCTCACATG 57.416 30.769 0.00 0.00 0.00 3.21
111 112 8.415553 TGACACAAAAATGAAATCTTCTCACAT 58.584 29.630 0.00 0.00 0.00 3.21
112 113 7.770201 TGACACAAAAATGAAATCTTCTCACA 58.230 30.769 0.00 0.00 0.00 3.58
113 114 8.697067 CATGACACAAAAATGAAATCTTCTCAC 58.303 33.333 0.00 0.00 0.00 3.51
114 115 8.415553 ACATGACACAAAAATGAAATCTTCTCA 58.584 29.630 0.00 0.00 0.00 3.27
115 116 8.807667 ACATGACACAAAAATGAAATCTTCTC 57.192 30.769 0.00 0.00 0.00 2.87
116 117 9.903682 CTACATGACACAAAAATGAAATCTTCT 57.096 29.630 0.00 0.00 0.00 2.85
117 118 9.897744 TCTACATGACACAAAAATGAAATCTTC 57.102 29.630 0.00 0.00 0.00 2.87
119 120 9.683069 GTTCTACATGACACAAAAATGAAATCT 57.317 29.630 0.00 0.00 0.00 2.40
120 121 9.462174 TGTTCTACATGACACAAAAATGAAATC 57.538 29.630 0.00 0.00 0.00 2.17
121 122 9.814899 TTGTTCTACATGACACAAAAATGAAAT 57.185 25.926 0.00 0.00 0.00 2.17
122 123 9.299963 CTTGTTCTACATGACACAAAAATGAAA 57.700 29.630 0.00 0.00 31.00 2.69
123 124 7.920151 CCTTGTTCTACATGACACAAAAATGAA 59.080 33.333 0.00 0.00 31.00 2.57
124 125 7.068103 ACCTTGTTCTACATGACACAAAAATGA 59.932 33.333 0.00 0.00 31.00 2.57
125 126 7.202526 ACCTTGTTCTACATGACACAAAAATG 58.797 34.615 0.00 0.00 31.00 2.32
126 127 7.346751 ACCTTGTTCTACATGACACAAAAAT 57.653 32.000 0.00 0.00 31.00 1.82
127 128 6.767524 ACCTTGTTCTACATGACACAAAAA 57.232 33.333 0.00 0.00 31.00 1.94
128 129 9.562408 TTATACCTTGTTCTACATGACACAAAA 57.438 29.630 0.00 0.00 31.00 2.44
129 130 9.733556 ATTATACCTTGTTCTACATGACACAAA 57.266 29.630 0.00 0.00 31.00 2.83
130 131 9.378551 GATTATACCTTGTTCTACATGACACAA 57.621 33.333 0.00 1.86 0.00 3.33
131 132 8.758829 AGATTATACCTTGTTCTACATGACACA 58.241 33.333 0.00 0.00 0.00 3.72
132 133 9.601217 AAGATTATACCTTGTTCTACATGACAC 57.399 33.333 0.00 0.00 0.00 3.67
133 134 9.817809 GAAGATTATACCTTGTTCTACATGACA 57.182 33.333 0.00 0.00 0.00 3.58
134 135 9.817809 TGAAGATTATACCTTGTTCTACATGAC 57.182 33.333 0.00 0.00 0.00 3.06
148 149 9.890629 TGGCTACATTATCATGAAGATTATACC 57.109 33.333 0.00 0.00 38.19 2.73
151 152 8.900781 GCATGGCTACATTATCATGAAGATTAT 58.099 33.333 0.00 0.00 39.27 1.28
152 153 7.884354 TGCATGGCTACATTATCATGAAGATTA 59.116 33.333 0.00 0.00 39.27 1.75
153 154 6.717997 TGCATGGCTACATTATCATGAAGATT 59.282 34.615 0.00 0.00 39.27 2.40
154 155 6.243148 TGCATGGCTACATTATCATGAAGAT 58.757 36.000 0.00 0.00 39.27 2.40
155 156 5.623169 TGCATGGCTACATTATCATGAAGA 58.377 37.500 0.00 0.00 39.27 2.87
156 157 5.952526 TGCATGGCTACATTATCATGAAG 57.047 39.130 0.00 0.00 39.27 3.02
157 158 6.904463 ATTGCATGGCTACATTATCATGAA 57.096 33.333 0.00 0.00 39.27 2.57
158 159 6.071784 GGAATTGCATGGCTACATTATCATGA 60.072 38.462 0.00 0.00 39.27 3.07
159 160 6.097356 GGAATTGCATGGCTACATTATCATG 58.903 40.000 0.00 0.00 39.74 3.07
160 161 5.776208 TGGAATTGCATGGCTACATTATCAT 59.224 36.000 0.00 0.00 34.35 2.45
161 162 5.139001 TGGAATTGCATGGCTACATTATCA 58.861 37.500 0.00 0.00 34.35 2.15
162 163 5.710513 TGGAATTGCATGGCTACATTATC 57.289 39.130 0.00 0.00 34.35 1.75
163 164 6.098695 ACTTTGGAATTGCATGGCTACATTAT 59.901 34.615 0.00 0.00 34.35 1.28
164 165 5.421693 ACTTTGGAATTGCATGGCTACATTA 59.578 36.000 0.00 0.00 34.35 1.90
165 166 4.223477 ACTTTGGAATTGCATGGCTACATT 59.777 37.500 0.00 0.00 34.35 2.71
166 167 3.770933 ACTTTGGAATTGCATGGCTACAT 59.229 39.130 0.00 0.00 37.99 2.29
167 168 3.164268 ACTTTGGAATTGCATGGCTACA 58.836 40.909 0.00 0.00 0.00 2.74
168 169 3.874392 ACTTTGGAATTGCATGGCTAC 57.126 42.857 0.00 0.00 0.00 3.58
169 170 4.888326 AAACTTTGGAATTGCATGGCTA 57.112 36.364 0.00 0.00 0.00 3.93
170 171 3.775261 AAACTTTGGAATTGCATGGCT 57.225 38.095 0.00 0.00 0.00 4.75
171 172 5.177326 TGATAAACTTTGGAATTGCATGGC 58.823 37.500 0.00 0.00 0.00 4.40
172 173 6.480981 GGATGATAAACTTTGGAATTGCATGG 59.519 38.462 0.00 0.00 0.00 3.66
173 174 7.042950 TGGATGATAAACTTTGGAATTGCATG 58.957 34.615 0.00 0.00 0.00 4.06
174 175 7.185318 TGGATGATAAACTTTGGAATTGCAT 57.815 32.000 0.00 0.00 0.00 3.96
175 176 6.602410 TGGATGATAAACTTTGGAATTGCA 57.398 33.333 0.00 0.00 0.00 4.08
176 177 7.148423 GGTTTGGATGATAAACTTTGGAATTGC 60.148 37.037 0.00 0.00 37.96 3.56
177 178 8.096414 AGGTTTGGATGATAAACTTTGGAATTG 58.904 33.333 0.00 0.00 37.96 2.32
178 179 8.096414 CAGGTTTGGATGATAAACTTTGGAATT 58.904 33.333 0.00 0.00 37.96 2.17
179 180 7.454380 TCAGGTTTGGATGATAAACTTTGGAAT 59.546 33.333 0.00 0.00 37.96 3.01
180 181 6.780031 TCAGGTTTGGATGATAAACTTTGGAA 59.220 34.615 0.00 0.00 37.96 3.53
181 182 6.310941 TCAGGTTTGGATGATAAACTTTGGA 58.689 36.000 0.00 0.00 37.96 3.53
182 183 6.588719 TCAGGTTTGGATGATAAACTTTGG 57.411 37.500 0.00 0.00 37.96 3.28
183 184 8.928733 CAAATCAGGTTTGGATGATAAACTTTG 58.071 33.333 0.00 0.00 42.79 2.77
197 198 6.758254 AGGTTTCAATACCAAATCAGGTTTG 58.242 36.000 0.00 0.00 45.44 2.93
198 199 6.553100 TGAGGTTTCAATACCAAATCAGGTTT 59.447 34.615 0.00 0.00 43.08 3.27
199 200 6.074648 TGAGGTTTCAATACCAAATCAGGTT 58.925 36.000 0.00 0.00 43.08 3.50
200 201 5.640147 TGAGGTTTCAATACCAAATCAGGT 58.360 37.500 0.00 0.00 45.72 4.00
201 202 5.945784 TCTGAGGTTTCAATACCAAATCAGG 59.054 40.000 0.00 0.00 40.82 3.86
202 203 6.094603 CCTCTGAGGTTTCAATACCAAATCAG 59.905 42.308 15.76 0.00 40.82 2.90
203 204 5.945784 CCTCTGAGGTTTCAATACCAAATCA 59.054 40.000 15.76 0.00 40.82 2.57
204 205 5.163612 GCCTCTGAGGTTTCAATACCAAATC 60.164 44.000 23.92 0.00 40.82 2.17
205 206 4.706962 GCCTCTGAGGTTTCAATACCAAAT 59.293 41.667 23.92 0.00 40.82 2.32
206 207 4.079253 GCCTCTGAGGTTTCAATACCAAA 58.921 43.478 23.92 0.00 40.82 3.28
207 208 3.073798 TGCCTCTGAGGTTTCAATACCAA 59.926 43.478 23.92 0.00 40.82 3.67
208 209 2.642311 TGCCTCTGAGGTTTCAATACCA 59.358 45.455 23.92 8.02 40.82 3.25
209 210 3.350219 TGCCTCTGAGGTTTCAATACC 57.650 47.619 23.92 5.51 37.80 2.73
210 211 5.415701 TGAAATGCCTCTGAGGTTTCAATAC 59.584 40.000 27.21 11.60 37.40 1.89
211 212 5.569355 TGAAATGCCTCTGAGGTTTCAATA 58.431 37.500 27.21 13.46 37.40 1.90
212 213 4.410099 TGAAATGCCTCTGAGGTTTCAAT 58.590 39.130 27.21 10.82 37.40 2.57
213 214 3.831323 TGAAATGCCTCTGAGGTTTCAA 58.169 40.909 27.21 16.97 37.40 2.69
214 215 3.507162 TGAAATGCCTCTGAGGTTTCA 57.493 42.857 26.32 26.32 37.76 2.69
215 216 3.192212 CCTTGAAATGCCTCTGAGGTTTC 59.808 47.826 23.92 23.44 37.80 2.78
216 217 3.160269 CCTTGAAATGCCTCTGAGGTTT 58.840 45.455 23.92 17.06 37.80 3.27
217 218 2.556114 CCCTTGAAATGCCTCTGAGGTT 60.556 50.000 23.92 11.33 37.80 3.50
218 219 1.005215 CCCTTGAAATGCCTCTGAGGT 59.995 52.381 23.92 4.87 37.80 3.85
219 220 1.760192 CCCTTGAAATGCCTCTGAGG 58.240 55.000 19.55 19.55 38.80 3.86
220 221 1.101331 GCCCTTGAAATGCCTCTGAG 58.899 55.000 0.00 0.00 0.00 3.35
221 222 0.323725 GGCCCTTGAAATGCCTCTGA 60.324 55.000 0.00 0.00 42.01 3.27
222 223 0.612732 TGGCCCTTGAAATGCCTCTG 60.613 55.000 0.00 0.00 45.56 3.35
223 224 0.114954 TTGGCCCTTGAAATGCCTCT 59.885 50.000 0.00 0.00 45.56 3.69
224 225 1.197812 ATTGGCCCTTGAAATGCCTC 58.802 50.000 0.00 0.00 45.56 4.70
225 226 1.556451 GAATTGGCCCTTGAAATGCCT 59.444 47.619 0.00 0.00 45.56 4.75
226 227 1.278699 TGAATTGGCCCTTGAAATGCC 59.721 47.619 0.00 0.00 45.56 4.40
227 228 2.027837 ACTGAATTGGCCCTTGAAATGC 60.028 45.455 0.00 0.00 0.00 3.56
228 229 3.258872 TCACTGAATTGGCCCTTGAAATG 59.741 43.478 0.00 0.00 0.00 2.32
229 230 3.509442 TCACTGAATTGGCCCTTGAAAT 58.491 40.909 0.00 0.00 0.00 2.17
230 231 2.956132 TCACTGAATTGGCCCTTGAAA 58.044 42.857 0.00 0.00 0.00 2.69
231 232 2.627699 GTTCACTGAATTGGCCCTTGAA 59.372 45.455 0.00 0.00 0.00 2.69
232 233 2.238521 GTTCACTGAATTGGCCCTTGA 58.761 47.619 0.00 0.00 0.00 3.02
233 234 1.962807 TGTTCACTGAATTGGCCCTTG 59.037 47.619 0.00 0.00 0.00 3.61
234 235 2.365293 GTTGTTCACTGAATTGGCCCTT 59.635 45.455 0.00 0.00 0.00 3.95
235 236 1.963515 GTTGTTCACTGAATTGGCCCT 59.036 47.619 0.00 0.00 0.00 5.19
236 237 1.000843 GGTTGTTCACTGAATTGGCCC 59.999 52.381 0.00 0.00 0.00 5.80
237 238 1.686052 TGGTTGTTCACTGAATTGGCC 59.314 47.619 0.00 0.00 0.00 5.36
238 239 3.451141 TTGGTTGTTCACTGAATTGGC 57.549 42.857 0.00 0.00 0.00 4.52
239 240 4.753233 TGTTTGGTTGTTCACTGAATTGG 58.247 39.130 0.00 0.00 0.00 3.16
240 241 5.276963 GCATGTTTGGTTGTTCACTGAATTG 60.277 40.000 0.00 0.00 0.00 2.32
241 242 4.810491 GCATGTTTGGTTGTTCACTGAATT 59.190 37.500 0.00 0.00 0.00 2.17
242 243 4.370917 GCATGTTTGGTTGTTCACTGAAT 58.629 39.130 0.00 0.00 0.00 2.57
243 244 3.733380 CGCATGTTTGGTTGTTCACTGAA 60.733 43.478 0.00 0.00 0.00 3.02
244 245 2.223456 CGCATGTTTGGTTGTTCACTGA 60.223 45.455 0.00 0.00 0.00 3.41
245 246 2.118683 CGCATGTTTGGTTGTTCACTG 58.881 47.619 0.00 0.00 0.00 3.66
246 247 2.020720 TCGCATGTTTGGTTGTTCACT 58.979 42.857 0.00 0.00 0.00 3.41
247 248 2.483583 TCGCATGTTTGGTTGTTCAC 57.516 45.000 0.00 0.00 0.00 3.18
248 249 2.425312 AGTTCGCATGTTTGGTTGTTCA 59.575 40.909 0.00 0.00 0.00 3.18
249 250 3.042887 GAGTTCGCATGTTTGGTTGTTC 58.957 45.455 0.00 0.00 0.00 3.18
250 251 2.540769 CGAGTTCGCATGTTTGGTTGTT 60.541 45.455 0.00 0.00 0.00 2.83
251 252 1.002900 CGAGTTCGCATGTTTGGTTGT 60.003 47.619 0.00 0.00 0.00 3.32
252 253 1.002900 ACGAGTTCGCATGTTTGGTTG 60.003 47.619 0.73 0.00 44.43 3.77
253 254 1.305201 ACGAGTTCGCATGTTTGGTT 58.695 45.000 0.73 0.00 44.43 3.67
254 255 2.157834 TACGAGTTCGCATGTTTGGT 57.842 45.000 0.73 0.00 44.43 3.67
255 256 3.124466 TGAATACGAGTTCGCATGTTTGG 59.876 43.478 0.73 0.00 44.43 3.28
256 257 4.320667 TGAATACGAGTTCGCATGTTTG 57.679 40.909 0.73 0.00 44.43 2.93
257 258 4.727734 GCATGAATACGAGTTCGCATGTTT 60.728 41.667 15.88 0.58 44.43 2.83
258 259 3.242413 GCATGAATACGAGTTCGCATGTT 60.242 43.478 15.88 2.85 44.43 2.71
259 260 2.285220 GCATGAATACGAGTTCGCATGT 59.715 45.455 15.88 0.00 44.43 3.21
260 261 2.348872 GGCATGAATACGAGTTCGCATG 60.349 50.000 0.00 12.46 44.43 4.06
261 262 1.867233 GGCATGAATACGAGTTCGCAT 59.133 47.619 0.00 0.00 44.43 4.73
262 263 1.286501 GGCATGAATACGAGTTCGCA 58.713 50.000 0.00 0.00 44.43 5.10
263 264 1.286501 TGGCATGAATACGAGTTCGC 58.713 50.000 0.00 0.00 44.43 4.70
264 265 4.033932 TGAAATGGCATGAATACGAGTTCG 59.966 41.667 0.00 0.00 46.33 3.95
265 266 5.065218 ACTGAAATGGCATGAATACGAGTTC 59.935 40.000 0.00 0.00 0.00 3.01
266 267 4.943705 ACTGAAATGGCATGAATACGAGTT 59.056 37.500 0.00 0.00 0.00 3.01
267 268 4.517285 ACTGAAATGGCATGAATACGAGT 58.483 39.130 0.00 0.00 0.00 4.18
268 269 5.490139 AACTGAAATGGCATGAATACGAG 57.510 39.130 0.00 0.00 0.00 4.18
269 270 4.335315 GGAACTGAAATGGCATGAATACGA 59.665 41.667 0.00 0.00 0.00 3.43
270 271 4.336433 AGGAACTGAAATGGCATGAATACG 59.664 41.667 0.00 0.00 37.18 3.06
271 272 5.357878 TGAGGAACTGAAATGGCATGAATAC 59.642 40.000 0.00 0.00 41.55 1.89
272 273 5.508567 TGAGGAACTGAAATGGCATGAATA 58.491 37.500 0.00 0.00 41.55 1.75
273 274 4.346730 TGAGGAACTGAAATGGCATGAAT 58.653 39.130 0.00 0.00 41.55 2.57
274 275 3.765381 TGAGGAACTGAAATGGCATGAA 58.235 40.909 0.00 0.00 41.55 2.57
275 276 3.438216 TGAGGAACTGAAATGGCATGA 57.562 42.857 0.00 0.00 41.55 3.07
276 277 4.158949 TCAATGAGGAACTGAAATGGCATG 59.841 41.667 0.00 0.00 41.55 4.06
277 278 4.346730 TCAATGAGGAACTGAAATGGCAT 58.653 39.130 0.00 0.00 41.55 4.40
278 279 3.765381 TCAATGAGGAACTGAAATGGCA 58.235 40.909 0.00 0.00 41.55 4.92
279 280 4.789012 TTCAATGAGGAACTGAAATGGC 57.211 40.909 0.00 0.00 41.55 4.40
280 281 6.071221 TCCAATTCAATGAGGAACTGAAATGG 60.071 38.462 10.53 10.53 45.49 3.16
281 282 6.927416 TCCAATTCAATGAGGAACTGAAATG 58.073 36.000 0.00 0.00 41.55 2.32
282 283 7.543359 TTCCAATTCAATGAGGAACTGAAAT 57.457 32.000 1.30 0.00 41.55 2.17
283 284 6.975196 TTCCAATTCAATGAGGAACTGAAA 57.025 33.333 1.30 0.00 41.55 2.69
284 285 7.543359 AATTCCAATTCAATGAGGAACTGAA 57.457 32.000 6.69 0.00 42.42 3.02
285 286 7.233144 TGAAATTCCAATTCAATGAGGAACTGA 59.767 33.333 6.69 0.00 42.42 3.41
286 287 7.380536 TGAAATTCCAATTCAATGAGGAACTG 58.619 34.615 6.69 0.00 42.42 3.16
287 288 7.234166 ACTGAAATTCCAATTCAATGAGGAACT 59.766 33.333 6.69 0.00 42.42 3.01
288 289 7.381323 ACTGAAATTCCAATTCAATGAGGAAC 58.619 34.615 6.69 0.00 42.42 3.62
289 290 7.309990 GGACTGAAATTCCAATTCAATGAGGAA 60.310 37.037 6.95 6.95 43.63 3.36
290 291 6.153340 GGACTGAAATTCCAATTCAATGAGGA 59.847 38.462 0.00 0.00 36.43 3.71
291 292 6.071221 TGGACTGAAATTCCAATTCAATGAGG 60.071 38.462 0.00 0.00 40.35 3.86
292 293 6.927416 TGGACTGAAATTCCAATTCAATGAG 58.073 36.000 0.00 0.00 40.35 2.90
293 294 6.914654 TGGACTGAAATTCCAATTCAATGA 57.085 33.333 0.00 0.00 40.35 2.57
302 303 6.127758 CCGTATTGAATTGGACTGAAATTCCA 60.128 38.462 6.46 0.00 41.37 3.53
303 304 6.094881 TCCGTATTGAATTGGACTGAAATTCC 59.905 38.462 6.46 0.00 41.37 3.01
304 305 7.083875 TCCGTATTGAATTGGACTGAAATTC 57.916 36.000 2.65 2.65 42.07 2.17
305 306 6.404734 GCTCCGTATTGAATTGGACTGAAATT 60.405 38.462 0.00 0.00 0.00 1.82
306 307 5.066505 GCTCCGTATTGAATTGGACTGAAAT 59.933 40.000 0.00 0.00 0.00 2.17
307 308 4.394920 GCTCCGTATTGAATTGGACTGAAA 59.605 41.667 0.00 0.00 0.00 2.69
308 309 3.938963 GCTCCGTATTGAATTGGACTGAA 59.061 43.478 0.00 0.00 0.00 3.02
309 310 3.197766 AGCTCCGTATTGAATTGGACTGA 59.802 43.478 0.00 0.00 0.00 3.41
310 311 3.535561 AGCTCCGTATTGAATTGGACTG 58.464 45.455 0.00 0.00 0.00 3.51
311 312 3.452627 AGAGCTCCGTATTGAATTGGACT 59.547 43.478 10.93 0.04 0.00 3.85
312 313 3.798202 AGAGCTCCGTATTGAATTGGAC 58.202 45.455 10.93 0.00 0.00 4.02
313 314 4.081142 TCAAGAGCTCCGTATTGAATTGGA 60.081 41.667 10.93 0.00 0.00 3.53
314 315 4.191544 TCAAGAGCTCCGTATTGAATTGG 58.808 43.478 10.93 0.00 0.00 3.16
315 316 5.801350 TTCAAGAGCTCCGTATTGAATTG 57.199 39.130 19.43 11.10 36.89 2.32
316 317 6.201044 CGTATTCAAGAGCTCCGTATTGAATT 59.799 38.462 30.69 20.72 45.42 2.17
318 319 5.041287 CGTATTCAAGAGCTCCGTATTGAA 58.959 41.667 23.30 23.30 43.54 2.69
319 320 4.499188 CCGTATTCAAGAGCTCCGTATTGA 60.499 45.833 10.93 11.00 0.00 2.57
320 321 3.736252 CCGTATTCAAGAGCTCCGTATTG 59.264 47.826 10.93 8.61 0.00 1.90
321 322 3.635373 TCCGTATTCAAGAGCTCCGTATT 59.365 43.478 10.93 0.00 0.00 1.89
322 323 3.004524 GTCCGTATTCAAGAGCTCCGTAT 59.995 47.826 10.93 4.16 0.00 3.06
323 324 2.357009 GTCCGTATTCAAGAGCTCCGTA 59.643 50.000 10.93 0.00 0.00 4.02
324 325 1.134560 GTCCGTATTCAAGAGCTCCGT 59.865 52.381 10.93 0.00 0.00 4.69
325 326 1.134367 TGTCCGTATTCAAGAGCTCCG 59.866 52.381 10.93 4.63 0.00 4.63
326 327 2.961526 TGTCCGTATTCAAGAGCTCC 57.038 50.000 10.93 0.00 0.00 4.70
327 328 3.181475 TGGATGTCCGTATTCAAGAGCTC 60.181 47.826 5.27 5.27 39.43 4.09
328 329 2.766263 TGGATGTCCGTATTCAAGAGCT 59.234 45.455 0.00 0.00 39.43 4.09
329 330 3.179443 TGGATGTCCGTATTCAAGAGC 57.821 47.619 0.00 0.00 39.43 4.09
330 331 4.935205 TGTTTGGATGTCCGTATTCAAGAG 59.065 41.667 0.00 0.00 39.43 2.85
331 332 4.900684 TGTTTGGATGTCCGTATTCAAGA 58.099 39.130 0.00 0.00 39.43 3.02
332 333 5.621197 TTGTTTGGATGTCCGTATTCAAG 57.379 39.130 0.00 0.00 39.43 3.02
333 334 5.563867 GCTTTGTTTGGATGTCCGTATTCAA 60.564 40.000 0.00 0.00 39.43 2.69
334 335 4.083003 GCTTTGTTTGGATGTCCGTATTCA 60.083 41.667 0.00 0.00 39.43 2.57
335 336 4.083003 TGCTTTGTTTGGATGTCCGTATTC 60.083 41.667 0.00 0.00 39.43 1.75
336 337 3.823873 TGCTTTGTTTGGATGTCCGTATT 59.176 39.130 0.00 0.00 39.43 1.89
337 338 3.417101 TGCTTTGTTTGGATGTCCGTAT 58.583 40.909 0.00 0.00 39.43 3.06
338 339 2.852449 TGCTTTGTTTGGATGTCCGTA 58.148 42.857 0.00 0.00 39.43 4.02
339 340 1.686355 TGCTTTGTTTGGATGTCCGT 58.314 45.000 0.00 0.00 39.43 4.69
340 341 3.302365 AATGCTTTGTTTGGATGTCCG 57.698 42.857 0.00 0.00 39.43 4.79
341 342 5.048083 TCACTAATGCTTTGTTTGGATGTCC 60.048 40.000 0.00 0.00 0.00 4.02
342 343 6.012658 TCACTAATGCTTTGTTTGGATGTC 57.987 37.500 0.00 0.00 0.00 3.06
343 344 6.403866 TTCACTAATGCTTTGTTTGGATGT 57.596 33.333 0.00 0.00 0.00 3.06
344 345 7.599621 TCATTTCACTAATGCTTTGTTTGGATG 59.400 33.333 0.00 0.00 42.79 3.51
345 346 7.669427 TCATTTCACTAATGCTTTGTTTGGAT 58.331 30.769 0.00 0.00 42.79 3.41
346 347 7.048629 TCATTTCACTAATGCTTTGTTTGGA 57.951 32.000 0.00 0.00 42.79 3.53
347 348 7.224362 TGTTCATTTCACTAATGCTTTGTTTGG 59.776 33.333 0.00 0.00 42.79 3.28
348 349 8.129161 TGTTCATTTCACTAATGCTTTGTTTG 57.871 30.769 0.00 0.00 42.79 2.93
349 350 8.715191 TTGTTCATTTCACTAATGCTTTGTTT 57.285 26.923 0.00 0.00 42.79 2.83
350 351 8.891671 ATTGTTCATTTCACTAATGCTTTGTT 57.108 26.923 0.00 0.00 42.79 2.83
351 352 9.979578 TTATTGTTCATTTCACTAATGCTTTGT 57.020 25.926 0.00 0.00 42.79 2.83
392 393 8.685838 ACCTTCTCTAGTTGCTACTCTAATAG 57.314 38.462 3.45 0.00 35.78 1.73
394 395 9.476928 TTTACCTTCTCTAGTTGCTACTCTAAT 57.523 33.333 3.45 0.00 35.78 1.73
398 399 8.251721 TCATTTTACCTTCTCTAGTTGCTACTC 58.748 37.037 3.45 0.00 35.78 2.59
400 401 8.035984 AGTCATTTTACCTTCTCTAGTTGCTAC 58.964 37.037 0.00 0.00 0.00 3.58
403 404 6.874134 TGAGTCATTTTACCTTCTCTAGTTGC 59.126 38.462 0.00 0.00 0.00 4.17
413 414 5.070685 GTGGTTCCTGAGTCATTTTACCTT 58.929 41.667 12.34 0.00 0.00 3.50
427 428 3.821033 CCCTCAAAGTAAAGTGGTTCCTG 59.179 47.826 0.00 0.00 0.00 3.86
430 431 4.275196 GTGTCCCTCAAAGTAAAGTGGTTC 59.725 45.833 0.00 0.00 0.00 3.62
436 437 6.015350 TGTCTAGAGTGTCCCTCAAAGTAAAG 60.015 42.308 0.00 0.00 43.12 1.85
443 444 5.299531 CGAATATGTCTAGAGTGTCCCTCAA 59.700 44.000 0.00 0.00 43.12 3.02
451 452 2.351835 CGGGGCGAATATGTCTAGAGTG 60.352 54.545 0.00 0.00 0.00 3.51
454 455 1.611977 CACGGGGCGAATATGTCTAGA 59.388 52.381 0.00 0.00 0.00 2.43
472 473 3.787001 CTTCCCGAGGCCCCTCAC 61.787 72.222 14.28 0.00 42.86 3.51
486 487 1.299321 AGCCTTCTGGAGCTGCTTC 59.701 57.895 6.82 0.96 38.11 3.86
589 590 1.690283 CCAGCACGACGCATCTTCAG 61.690 60.000 0.00 0.00 46.13 3.02
659 660 4.791069 GGGCCCGTGGGACTAGGA 62.791 72.222 5.69 0.00 44.51 2.94
661 662 2.598787 TTTGGGCCCGTGGGACTAG 61.599 63.158 19.37 0.00 44.51 2.57
672 673 1.218854 GCACATGGATGTTTGGGCC 59.781 57.895 0.00 0.00 39.39 5.80
673 674 0.538118 ATGCACATGGATGTTTGGGC 59.462 50.000 0.00 0.00 39.39 5.36
681 682 2.762327 GGAGGAAAACATGCACATGGAT 59.238 45.455 14.73 0.96 42.91 3.41
682 683 2.170166 GGAGGAAAACATGCACATGGA 58.830 47.619 14.73 0.00 42.91 3.41
699 700 4.645535 TGTGAGAGAGAAAATTGGTGGAG 58.354 43.478 0.00 0.00 0.00 3.86
701 702 5.709164 AGATTGTGAGAGAGAAAATTGGTGG 59.291 40.000 0.00 0.00 0.00 4.61
726 727 0.677731 AAGTGTGGATCCCGCATGTG 60.678 55.000 9.90 0.00 46.11 3.21
746 747 1.180029 TGCTCCCTGTAAGACCGTAC 58.820 55.000 0.00 0.00 34.07 3.67
753 754 1.819288 TCTCTCGTTGCTCCCTGTAAG 59.181 52.381 0.00 0.00 0.00 2.34
757 758 0.605589 AAGTCTCTCGTTGCTCCCTG 59.394 55.000 0.00 0.00 0.00 4.45
759 760 1.470112 GCTAAGTCTCTCGTTGCTCCC 60.470 57.143 0.00 0.00 0.00 4.30
766 767 1.465794 GTCCTGGCTAAGTCTCTCGT 58.534 55.000 0.00 0.00 0.00 4.18
789 790 5.927030 TCAAACATGAGAATACGCTTCAAC 58.073 37.500 0.00 0.00 0.00 3.18
793 794 6.108687 TGATCTCAAACATGAGAATACGCTT 58.891 36.000 12.10 0.00 46.52 4.68
805 806 5.104610 AGTGCTCCACTATGATCTCAAACAT 60.105 40.000 0.00 0.00 43.46 2.71
832 834 0.951558 ACCATGGTGTTCAAACTCGC 59.048 50.000 18.99 0.00 0.00 5.03
847 849 1.559682 ACTCTCCGGCATGTAAACCAT 59.440 47.619 0.00 0.00 0.00 3.55
848 850 0.981183 ACTCTCCGGCATGTAAACCA 59.019 50.000 0.00 0.00 0.00 3.67
850 852 3.241067 TGTACTCTCCGGCATGTAAAC 57.759 47.619 0.00 0.00 0.00 2.01
851 853 3.965379 TTGTACTCTCCGGCATGTAAA 57.035 42.857 0.00 0.00 0.00 2.01
898 900 3.385111 AGCGAGGTCCCTCTATTTTGTAG 59.615 47.826 11.41 0.00 40.69 2.74
901 903 2.168521 TGAGCGAGGTCCCTCTATTTTG 59.831 50.000 11.41 0.00 40.69 2.44
906 908 2.160721 AATTGAGCGAGGTCCCTCTA 57.839 50.000 11.41 0.00 40.69 2.43
951 953 6.688637 TCAGATAGTGGATTTGCAGAAATG 57.311 37.500 0.00 0.00 31.58 2.32
1612 1614 2.639065 GACGCCCTTATCAACCATGAA 58.361 47.619 0.00 0.00 39.49 2.57
1699 1701 6.309357 TGGATCCAAATATCATTTCCCTGAG 58.691 40.000 13.46 0.00 0.00 3.35
1741 1743 2.498078 AGAGGACTACCAGCAAAGTAGC 59.502 50.000 7.50 0.00 40.77 3.58
2288 2290 2.540383 TCATATCCCCCATCGAAGGAG 58.460 52.381 8.60 0.00 31.94 3.69
2289 2291 2.713828 TCATATCCCCCATCGAAGGA 57.286 50.000 8.60 3.71 0.00 3.36
2290 2292 2.573462 ACATCATATCCCCCATCGAAGG 59.427 50.000 0.00 0.00 0.00 3.46
2291 2293 3.988976 ACATCATATCCCCCATCGAAG 57.011 47.619 0.00 0.00 0.00 3.79
2292 2294 3.244875 CCAACATCATATCCCCCATCGAA 60.245 47.826 0.00 0.00 0.00 3.71
2293 2295 2.305635 CCAACATCATATCCCCCATCGA 59.694 50.000 0.00 0.00 0.00 3.59
2294 2296 2.305635 TCCAACATCATATCCCCCATCG 59.694 50.000 0.00 0.00 0.00 3.84
2295 2297 3.308688 CCTCCAACATCATATCCCCCATC 60.309 52.174 0.00 0.00 0.00 3.51
2296 2298 2.651334 CCTCCAACATCATATCCCCCAT 59.349 50.000 0.00 0.00 0.00 4.00
2297 2299 2.065007 CCTCCAACATCATATCCCCCA 58.935 52.381 0.00 0.00 0.00 4.96
2298 2300 1.272147 GCCTCCAACATCATATCCCCC 60.272 57.143 0.00 0.00 0.00 5.40
2299 2301 1.272147 GGCCTCCAACATCATATCCCC 60.272 57.143 0.00 0.00 0.00 4.81
2300 2302 1.611673 CGGCCTCCAACATCATATCCC 60.612 57.143 0.00 0.00 0.00 3.85
2301 2303 1.611673 CCGGCCTCCAACATCATATCC 60.612 57.143 0.00 0.00 0.00 2.59
2302 2304 1.072331 ACCGGCCTCCAACATCATATC 59.928 52.381 0.00 0.00 0.00 1.63
2303 2305 1.140312 ACCGGCCTCCAACATCATAT 58.860 50.000 0.00 0.00 0.00 1.78
2304 2306 0.180171 CACCGGCCTCCAACATCATA 59.820 55.000 0.00 0.00 0.00 2.15
2305 2307 1.077501 CACCGGCCTCCAACATCAT 60.078 57.895 0.00 0.00 0.00 2.45
2306 2308 2.184020 CTCACCGGCCTCCAACATCA 62.184 60.000 0.00 0.00 0.00 3.07
2307 2309 1.450312 CTCACCGGCCTCCAACATC 60.450 63.158 0.00 0.00 0.00 3.06
2308 2310 1.903877 CTCTCACCGGCCTCCAACAT 61.904 60.000 0.00 0.00 0.00 2.71
2309 2311 2.525629 TCTCACCGGCCTCCAACA 60.526 61.111 0.00 0.00 0.00 3.33
2310 2312 2.266055 CTCTCACCGGCCTCCAAC 59.734 66.667 0.00 0.00 0.00 3.77
2311 2313 3.706373 GCTCTCACCGGCCTCCAA 61.706 66.667 0.00 0.00 0.00 3.53
2319 2321 1.586154 ATTTTTGGCCGCTCTCACCG 61.586 55.000 0.00 0.00 0.00 4.94
2320 2322 0.109132 CATTTTTGGCCGCTCTCACC 60.109 55.000 0.00 0.00 0.00 4.02
2321 2323 0.109132 CCATTTTTGGCCGCTCTCAC 60.109 55.000 0.00 0.00 0.00 3.51
2322 2324 0.539438 ACCATTTTTGGCCGCTCTCA 60.539 50.000 0.00 0.00 0.00 3.27
2323 2325 0.603065 AACCATTTTTGGCCGCTCTC 59.397 50.000 0.00 0.00 0.00 3.20
2324 2326 0.318120 CAACCATTTTTGGCCGCTCT 59.682 50.000 0.00 0.00 0.00 4.09
2325 2327 0.316841 TCAACCATTTTTGGCCGCTC 59.683 50.000 0.00 0.00 0.00 5.03
2326 2328 0.033366 GTCAACCATTTTTGGCCGCT 59.967 50.000 0.00 0.00 0.00 5.52
2327 2329 0.249657 TGTCAACCATTTTTGGCCGC 60.250 50.000 0.00 0.00 29.43 6.53
2328 2330 2.231215 TTGTCAACCATTTTTGGCCG 57.769 45.000 0.00 0.00 29.43 6.13
2329 2331 3.882288 ACAATTGTCAACCATTTTTGGCC 59.118 39.130 4.92 0.00 29.43 5.36
2330 2332 6.348376 CCATACAATTGTCAACCATTTTTGGC 60.348 38.462 15.85 0.00 0.00 4.52
2331 2333 6.149142 CCCATACAATTGTCAACCATTTTTGG 59.851 38.462 15.85 1.82 0.00 3.28
2332 2334 6.348376 GCCCATACAATTGTCAACCATTTTTG 60.348 38.462 15.85 0.00 0.00 2.44
2333 2335 5.704978 GCCCATACAATTGTCAACCATTTTT 59.295 36.000 15.85 0.00 0.00 1.94
2334 2336 5.012975 AGCCCATACAATTGTCAACCATTTT 59.987 36.000 15.85 0.00 0.00 1.82
2335 2337 4.531732 AGCCCATACAATTGTCAACCATTT 59.468 37.500 15.85 0.00 0.00 2.32
2336 2338 4.095946 AGCCCATACAATTGTCAACCATT 58.904 39.130 15.85 0.00 0.00 3.16
2337 2339 3.701040 GAGCCCATACAATTGTCAACCAT 59.299 43.478 15.85 0.00 0.00 3.55
2338 2340 3.088532 GAGCCCATACAATTGTCAACCA 58.911 45.455 15.85 0.00 0.00 3.67
2339 2341 3.129287 CAGAGCCCATACAATTGTCAACC 59.871 47.826 15.85 1.39 0.00 3.77
2340 2342 3.758554 ACAGAGCCCATACAATTGTCAAC 59.241 43.478 15.85 1.73 0.00 3.18
2341 2343 4.032960 ACAGAGCCCATACAATTGTCAA 57.967 40.909 15.85 0.00 0.00 3.18
2342 2344 3.719268 ACAGAGCCCATACAATTGTCA 57.281 42.857 15.85 2.27 0.00 3.58
2343 2345 4.770795 ACTACAGAGCCCATACAATTGTC 58.229 43.478 15.85 0.00 0.00 3.18
2344 2346 4.844349 ACTACAGAGCCCATACAATTGT 57.156 40.909 16.68 16.68 0.00 2.71
2345 2347 5.431765 AGAACTACAGAGCCCATACAATTG 58.568 41.667 3.24 3.24 0.00 2.32
2346 2348 5.700402 AGAACTACAGAGCCCATACAATT 57.300 39.130 0.00 0.00 0.00 2.32
2347 2349 5.426833 AGAAGAACTACAGAGCCCATACAAT 59.573 40.000 0.00 0.00 0.00 2.71
2348 2350 4.777896 AGAAGAACTACAGAGCCCATACAA 59.222 41.667 0.00 0.00 0.00 2.41
2349 2351 4.353777 AGAAGAACTACAGAGCCCATACA 58.646 43.478 0.00 0.00 0.00 2.29
2350 2352 4.402793 TGAGAAGAACTACAGAGCCCATAC 59.597 45.833 0.00 0.00 0.00 2.39
2351 2353 4.610333 TGAGAAGAACTACAGAGCCCATA 58.390 43.478 0.00 0.00 0.00 2.74
2352 2354 3.445008 TGAGAAGAACTACAGAGCCCAT 58.555 45.455 0.00 0.00 0.00 4.00
2353 2355 2.889512 TGAGAAGAACTACAGAGCCCA 58.110 47.619 0.00 0.00 0.00 5.36
2354 2356 3.591023 GTTGAGAAGAACTACAGAGCCC 58.409 50.000 0.00 0.00 0.00 5.19
2355 2357 3.591023 GGTTGAGAAGAACTACAGAGCC 58.409 50.000 0.00 0.00 0.00 4.70
2356 2358 3.006967 TGGGTTGAGAAGAACTACAGAGC 59.993 47.826 0.00 0.00 0.00 4.09
2357 2359 4.561105 GTGGGTTGAGAAGAACTACAGAG 58.439 47.826 0.00 0.00 0.00 3.35
2358 2360 3.005472 CGTGGGTTGAGAAGAACTACAGA 59.995 47.826 0.00 0.00 0.00 3.41
2359 2361 3.318017 CGTGGGTTGAGAAGAACTACAG 58.682 50.000 0.00 0.00 0.00 2.74
2360 2362 2.547218 GCGTGGGTTGAGAAGAACTACA 60.547 50.000 0.00 0.00 0.00 2.74
2361 2363 2.067013 GCGTGGGTTGAGAAGAACTAC 58.933 52.381 0.00 0.00 0.00 2.73
2362 2364 1.968493 AGCGTGGGTTGAGAAGAACTA 59.032 47.619 0.00 0.00 0.00 2.24
2363 2365 0.759346 AGCGTGGGTTGAGAAGAACT 59.241 50.000 0.00 0.00 0.00 3.01
2364 2366 0.868406 CAGCGTGGGTTGAGAAGAAC 59.132 55.000 0.00 0.00 0.00 3.01
2365 2367 0.250295 CCAGCGTGGGTTGAGAAGAA 60.250 55.000 0.00 0.00 32.67 2.52
2366 2368 1.371183 CCAGCGTGGGTTGAGAAGA 59.629 57.895 0.00 0.00 32.67 2.87
2367 2369 3.972227 CCAGCGTGGGTTGAGAAG 58.028 61.111 0.00 0.00 32.67 2.85
2380 2382 3.607084 AACCATGGAAGCCCCCAGC 62.607 63.158 21.47 0.00 39.97 4.85
2381 2383 0.972471 GAAACCATGGAAGCCCCCAG 60.972 60.000 21.47 0.00 39.97 4.45
2382 2384 1.078347 GAAACCATGGAAGCCCCCA 59.922 57.895 21.47 0.00 41.05 4.96
2383 2385 1.685765 GGAAACCATGGAAGCCCCC 60.686 63.158 21.47 6.67 0.00 5.40
2384 2386 2.052104 CGGAAACCATGGAAGCCCC 61.052 63.158 21.47 10.66 0.00 5.80
2385 2387 1.304134 ACGGAAACCATGGAAGCCC 60.304 57.895 21.47 12.43 0.00 5.19
2386 2388 0.608035 TCACGGAAACCATGGAAGCC 60.608 55.000 21.47 14.54 0.00 4.35
2387 2389 1.463674 ATCACGGAAACCATGGAAGC 58.536 50.000 21.47 6.34 0.00 3.86
2388 2390 2.614057 GCTATCACGGAAACCATGGAAG 59.386 50.000 21.47 6.93 0.00 3.46
2389 2391 2.238646 AGCTATCACGGAAACCATGGAA 59.761 45.455 21.47 0.00 0.00 3.53
2390 2392 1.837439 AGCTATCACGGAAACCATGGA 59.163 47.619 21.47 0.00 0.00 3.41
2391 2393 2.158900 AGAGCTATCACGGAAACCATGG 60.159 50.000 11.19 11.19 0.00 3.66
2392 2394 3.126831 GAGAGCTATCACGGAAACCATG 58.873 50.000 2.79 0.00 0.00 3.66
2393 2395 3.034635 AGAGAGCTATCACGGAAACCAT 58.965 45.455 11.60 0.00 0.00 3.55
2394 2396 2.457598 AGAGAGCTATCACGGAAACCA 58.542 47.619 11.60 0.00 0.00 3.67
2395 2397 3.528597 AAGAGAGCTATCACGGAAACC 57.471 47.619 11.60 0.00 0.00 3.27
2396 2398 4.036352 CGTAAGAGAGCTATCACGGAAAC 58.964 47.826 11.60 0.00 43.02 2.78
2397 2399 3.693085 ACGTAAGAGAGCTATCACGGAAA 59.307 43.478 20.81 0.00 43.62 3.13
2398 2400 3.276857 ACGTAAGAGAGCTATCACGGAA 58.723 45.455 20.81 0.00 43.62 4.30
2399 2401 2.871022 GACGTAAGAGAGCTATCACGGA 59.129 50.000 20.81 0.00 43.62 4.69
2400 2402 2.348685 CGACGTAAGAGAGCTATCACGG 60.349 54.545 20.81 6.66 43.62 4.94
2401 2403 2.284684 ACGACGTAAGAGAGCTATCACG 59.715 50.000 16.80 16.80 43.62 4.35
2402 2404 3.948196 ACGACGTAAGAGAGCTATCAC 57.052 47.619 11.60 0.00 43.62 3.06
2403 2405 6.259387 TCAATAACGACGTAAGAGAGCTATCA 59.741 38.462 11.60 0.00 43.62 2.15
2404 2406 6.656945 TCAATAACGACGTAAGAGAGCTATC 58.343 40.000 0.00 0.00 43.62 2.08
2405 2407 6.615264 TCAATAACGACGTAAGAGAGCTAT 57.385 37.500 0.00 0.00 43.62 2.97
2406 2408 6.259387 TCATCAATAACGACGTAAGAGAGCTA 59.741 38.462 0.00 0.00 43.62 3.32
2407 2409 4.959596 TCAATAACGACGTAAGAGAGCT 57.040 40.909 0.00 0.00 43.62 4.09
2408 2410 5.271625 TCATCAATAACGACGTAAGAGAGC 58.728 41.667 0.00 0.00 43.62 4.09
2409 2411 6.075310 GCTTCATCAATAACGACGTAAGAGAG 60.075 42.308 0.00 0.00 43.62 3.20
2410 2412 5.742453 GCTTCATCAATAACGACGTAAGAGA 59.258 40.000 0.00 0.00 43.62 3.10
2411 2413 5.744345 AGCTTCATCAATAACGACGTAAGAG 59.256 40.000 0.00 0.00 43.62 2.85
2412 2414 5.647589 AGCTTCATCAATAACGACGTAAGA 58.352 37.500 0.00 0.00 43.62 2.10
2414 2416 6.976349 ACATAGCTTCATCAATAACGACGTAA 59.024 34.615 0.00 0.00 0.00 3.18
2415 2417 6.500910 ACATAGCTTCATCAATAACGACGTA 58.499 36.000 0.00 0.00 0.00 3.57
2416 2418 5.348986 ACATAGCTTCATCAATAACGACGT 58.651 37.500 0.00 0.00 0.00 4.34
2417 2419 5.890110 ACATAGCTTCATCAATAACGACG 57.110 39.130 0.00 0.00 0.00 5.12
2441 2443 3.973973 CAGGTCCATGATCCTACCCTAAA 59.026 47.826 8.03 0.00 32.10 1.85
2442 2444 3.051341 ACAGGTCCATGATCCTACCCTAA 60.051 47.826 8.03 0.00 32.10 2.69
2491 2493 9.273016 AGTCGATTGAAAAGTGATTTCTTCTAA 57.727 29.630 0.00 0.00 46.27 2.10
2523 2525 4.322080 TCAAGTCTGTCGAGTGAAACAT 57.678 40.909 0.00 0.00 41.43 2.71
2528 2530 2.949644 TGTCTTCAAGTCTGTCGAGTGA 59.050 45.455 0.00 0.00 0.00 3.41
2542 2544 3.005791 TGCTTCTTGATCGAGTGTCTTCA 59.994 43.478 9.87 0.00 0.00 3.02
2555 2557 2.037121 TGGTCGAGTGATTGCTTCTTGA 59.963 45.455 0.00 0.00 0.00 3.02
2585 2587 1.000359 TCTCCTGGCCATCGAGTGA 60.000 57.895 22.83 10.17 0.00 3.41
2593 2595 1.276622 GACTTTAGGTCTCCTGGCCA 58.723 55.000 4.71 4.71 41.46 5.36
2861 2865 1.219393 CGAGTTCAGGCCCTTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
2884 2888 4.587262 TGGAGTAGTTGTAAGCACAAGAGA 59.413 41.667 0.00 0.00 45.18 3.10
2888 2892 5.046591 AGCTATGGAGTAGTTGTAAGCACAA 60.047 40.000 0.00 0.00 42.39 3.33
3026 3032 5.421693 ACCATGATGATTTGGATCGGAAAAA 59.578 36.000 0.00 0.00 36.79 1.94
3367 3374 0.686769 AGGCCGTAGAGGGATTCGTT 60.687 55.000 0.00 0.00 41.48 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.