Multiple sequence alignment - TraesCS6A01G184100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G184100 chr6A 100.000 7240 0 0 1 7240 214570265 214563026 0.000000e+00 13370.0
1 TraesCS6A01G184100 chr6A 77.002 487 96 13 1067 1544 206004484 206004963 1.550000e-66 265.0
2 TraesCS6A01G184100 chr6A 88.360 189 18 4 1810 1998 60016894 60016710 2.630000e-54 224.0
3 TraesCS6A01G184100 chr6A 88.824 170 18 1 1834 2002 338087450 338087281 2.650000e-49 207.0
4 TraesCS6A01G184100 chr6D 94.125 3285 131 25 1992 5243 157584534 157587789 0.000000e+00 4940.0
5 TraesCS6A01G184100 chr6D 94.750 1600 53 17 5242 6823 157587891 157589477 0.000000e+00 2460.0
6 TraesCS6A01G184100 chr6D 97.180 993 22 3 843 1835 157583551 157584537 0.000000e+00 1674.0
7 TraesCS6A01G184100 chr6D 92.432 370 14 2 6875 7240 157590266 157590625 3.870000e-142 516.0
8 TraesCS6A01G184100 chr6D 78.354 790 131 26 9 783 157582778 157583542 6.570000e-130 475.0
9 TraesCS6A01G184100 chr6D 96.364 165 6 0 1834 1998 305359627 305359791 9.260000e-69 272.0
10 TraesCS6A01G184100 chr6D 77.049 488 94 15 1067 1544 153807489 153807968 1.550000e-66 265.0
11 TraesCS6A01G184100 chr6D 93.151 73 2 1 6812 6881 157590158 157590230 3.570000e-18 104.0
12 TraesCS6A01G184100 chr6B 96.155 2913 76 12 1992 4882 281227399 281230297 0.000000e+00 4726.0
13 TraesCS6A01G184100 chr6B 95.752 1130 36 6 713 1833 281226274 281227400 0.000000e+00 1810.0
14 TraesCS6A01G184100 chr6B 94.163 771 30 11 5780 6540 281231347 281232112 0.000000e+00 1160.0
15 TraesCS6A01G184100 chr6B 90.650 877 41 14 4943 5790 281230297 281231161 0.000000e+00 1127.0
16 TraesCS6A01G184100 chr6B 94.853 272 11 3 6610 6881 281232120 281232388 8.680000e-114 422.0
17 TraesCS6A01G184100 chr6B 88.462 208 16 6 7011 7215 281232958 281233160 2.020000e-60 244.0
18 TraesCS6A01G184100 chr6B 85.417 192 21 6 1809 1999 633056382 633056567 7.410000e-45 193.0
19 TraesCS6A01G184100 chr6B 77.576 165 24 5 2205 2357 126151883 126151720 3.600000e-13 87.9
20 TraesCS6A01G184100 chr7A 90.295 577 48 7 997 1572 539554073 539553504 0.000000e+00 749.0
21 TraesCS6A01G184100 chr7A 82.135 459 81 1 2818 3276 539553436 539552979 6.810000e-105 392.0
22 TraesCS6A01G184100 chr7D 91.075 549 44 4 997 1544 459923291 459923835 0.000000e+00 737.0
23 TraesCS6A01G184100 chr7D 81.481 459 84 1 2818 3276 459923934 459924391 6.860000e-100 375.0
24 TraesCS6A01G184100 chr7D 95.238 168 8 0 1831 1998 52255646 52255813 4.310000e-67 267.0
25 TraesCS6A01G184100 chr7D 94.220 173 9 1 1834 2006 988906 988735 5.570000e-66 263.0
26 TraesCS6A01G184100 chr7D 95.652 69 2 1 4881 4948 236822680 236822612 7.680000e-20 110.0
27 TraesCS6A01G184100 chr7D 92.105 76 2 4 4881 4953 46702663 46702737 3.570000e-18 104.0
28 TraesCS6A01G184100 chr7D 75.000 232 52 6 435 660 480686240 480686009 1.280000e-17 102.0
29 TraesCS6A01G184100 chr7B 90.727 550 46 4 997 1545 482237949 482238494 0.000000e+00 728.0
30 TraesCS6A01G184100 chr7B 85.340 191 25 3 1809 1999 398673877 398674064 2.060000e-45 195.0
31 TraesCS6A01G184100 chr7B 90.123 81 3 3 4872 4950 620597901 620597824 4.620000e-17 100.0
32 TraesCS6A01G184100 chr2B 92.058 277 15 5 2086 2357 237968813 237969087 4.100000e-102 383.0
33 TraesCS6A01G184100 chr2B 100.000 28 0 0 4356 4383 611313172 611313145 1.300000e-02 52.8
34 TraesCS6A01G184100 chr2D 90.357 280 16 8 2086 2359 181307856 181308130 2.480000e-94 357.0
35 TraesCS6A01G184100 chr2D 85.326 184 24 2 1817 1998 387591266 387591084 3.450000e-43 187.0
36 TraesCS6A01G184100 chr2D 100.000 28 0 0 4356 4383 519340832 519340805 1.300000e-02 52.8
37 TraesCS6A01G184100 chr2A 90.278 216 14 4 2146 2356 196522981 196523194 7.150000e-70 276.0
38 TraesCS6A01G184100 chr2A 81.013 158 29 1 435 591 178235569 178235726 2.740000e-24 124.0
39 TraesCS6A01G184100 chr2A 95.122 41 2 0 2204 2244 9955550 9955590 1.690000e-06 65.8
40 TraesCS6A01G184100 chr3D 94.798 173 9 0 1834 2006 550509432 550509604 3.330000e-68 270.0
41 TraesCS6A01G184100 chr3D 95.783 166 7 0 1833 1998 435452249 435452414 1.200000e-67 268.0
42 TraesCS6A01G184100 chr3D 80.357 168 31 2 435 600 146713942 146713775 7.630000e-25 126.0
43 TraesCS6A01G184100 chr3D 76.522 230 50 4 435 660 271815009 271815238 9.860000e-24 122.0
44 TraesCS6A01G184100 chr3D 92.208 77 4 1 4874 4950 551999661 551999735 2.760000e-19 108.0
45 TraesCS6A01G184100 chr5D 95.783 166 7 0 1834 1999 48668966 48669131 1.200000e-67 268.0
46 TraesCS6A01G184100 chr5D 92.818 181 12 1 1833 2013 117350448 117350627 2.000000e-65 261.0
47 TraesCS6A01G184100 chr5D 76.522 230 50 4 435 660 172644353 172644124 9.860000e-24 122.0
48 TraesCS6A01G184100 chr5D 84.375 96 9 5 4857 4947 223302773 223302679 1.000000e-13 89.8
49 TraesCS6A01G184100 chr1D 94.220 173 9 1 1834 2006 9218208 9218379 5.570000e-66 263.0
50 TraesCS6A01G184100 chr1D 76.087 230 51 4 435 660 165694869 165694640 4.590000e-22 117.0
51 TraesCS6A01G184100 chr1D 74.892 231 53 5 435 660 170334616 170334846 4.620000e-17 100.0
52 TraesCS6A01G184100 chr1D 91.667 72 6 0 4879 4950 246070301 246070230 4.620000e-17 100.0
53 TraesCS6A01G184100 chr4D 92.697 178 13 0 1822 1999 475146207 475146384 2.590000e-64 257.0
54 TraesCS6A01G184100 chr5A 84.513 226 27 7 2400 2622 30202973 30203193 4.400000e-52 217.0
55 TraesCS6A01G184100 chr5A 86.316 190 21 3 1810 1998 323754666 323754481 1.230000e-47 202.0
56 TraesCS6A01G184100 chr5B 86.154 195 18 8 1811 2002 498886168 498885980 1.230000e-47 202.0
57 TraesCS6A01G184100 chr5B 77.778 171 37 1 435 604 622891279 622891449 3.570000e-18 104.0
58 TraesCS6A01G184100 chr3B 83.838 198 22 7 1804 1998 131498343 131498153 5.770000e-41 180.0
59 TraesCS6A01G184100 chr4B 83.249 197 28 4 1805 1998 81985326 81985520 7.460000e-40 176.0
60 TraesCS6A01G184100 chr4B 86.905 84 9 2 4874 4956 39764670 39764752 7.730000e-15 93.5
61 TraesCS6A01G184100 chr4A 76.119 201 45 3 435 632 246021531 246021331 1.280000e-17 102.0
62 TraesCS6A01G184100 chr1A 89.157 83 3 5 4866 4944 313907561 313907481 1.660000e-16 99.0
63 TraesCS6A01G184100 chr1B 76.000 200 33 10 2168 2357 667232628 667232434 1.000000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G184100 chr6A 214563026 214570265 7239 True 13370.000000 13370 100.000000 1 7240 1 chr6A.!!$R2 7239
1 TraesCS6A01G184100 chr6D 157582778 157590625 7847 False 1694.833333 4940 91.665333 9 7240 6 chr6D.!!$F3 7231
2 TraesCS6A01G184100 chr6B 281226274 281233160 6886 False 1581.500000 4726 93.339167 713 7215 6 chr6B.!!$F2 6502
3 TraesCS6A01G184100 chr7A 539552979 539554073 1094 True 570.500000 749 86.215000 997 3276 2 chr7A.!!$R1 2279
4 TraesCS6A01G184100 chr7D 459923291 459924391 1100 False 556.000000 737 86.278000 997 3276 2 chr7D.!!$F3 2279
5 TraesCS6A01G184100 chr7B 482237949 482238494 545 False 728.000000 728 90.727000 997 1545 1 chr7B.!!$F2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 835 0.033504 CGAACATCGTATGGGGGAGG 59.966 60.0 0.0 0.00 34.72 4.30 F
2600 2634 0.107081 TCGTTACTGGTGGGTTGTGG 59.893 55.0 0.0 0.00 0.00 4.17 F
3114 3149 0.957888 TTCAATGTGGCGCCGATTCA 60.958 50.0 23.9 17.96 0.00 2.57 F
3804 3842 0.842030 ACCTCCCTTCATGAGCACCA 60.842 55.0 0.0 0.00 0.00 4.17 F
5062 5132 0.167908 TTAACAGCCAAAGATGCGCG 59.832 50.0 0.0 0.00 30.46 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2669 2704 1.333115 GTTGGCGTTTATTTGTCCGC 58.667 50.000 0.00 0.0 45.05 5.54 R
3786 3823 0.549950 ATGGTGCTCATGAAGGGAGG 59.450 55.000 0.00 0.0 34.22 4.30 R
5061 5131 0.314935 AATTTGCACAGCCTCCAACG 59.685 50.000 0.00 0.0 0.00 4.10 R
5790 6191 1.262950 CAGTTTTCACGCACATCGGAA 59.737 47.619 0.00 0.0 43.86 4.30 R
6930 8085 0.033601 TCTCTCTGAGGACTCTGGGC 60.034 60.000 4.59 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.759346 GGTGCCCTACCCTACATCAG 59.241 60.000 0.00 0.00 44.15 2.90
36 37 5.010282 CCTACCCTACATCAGTTTTGCTTT 58.990 41.667 0.00 0.00 0.00 3.51
39 40 3.578688 CCTACATCAGTTTTGCTTTGGC 58.421 45.455 0.00 0.00 39.26 4.52
40 41 2.138596 ACATCAGTTTTGCTTTGGCG 57.861 45.000 0.00 0.00 42.25 5.69
52 53 0.608035 CTTTGGCGCACCCCTAGAAA 60.608 55.000 10.83 0.00 33.59 2.52
55 56 1.002502 GGCGCACCCCTAGAAAAGT 60.003 57.895 10.83 0.00 0.00 2.66
58 59 1.199327 GCGCACCCCTAGAAAAGTTTC 59.801 52.381 0.30 0.00 37.45 2.78
72 73 7.807977 AGAAAAGTTTCTAGACTTTGATGCA 57.192 32.000 9.61 0.00 46.23 3.96
73 74 7.869800 AGAAAAGTTTCTAGACTTTGATGCAG 58.130 34.615 9.61 0.00 46.23 4.41
80 81 9.766277 GTTTCTAGACTTTGATGCAGATTAAAG 57.234 33.333 0.00 11.08 39.79 1.85
84 85 7.330900 AGACTTTGATGCAGATTAAAGATGG 57.669 36.000 16.64 0.00 37.35 3.51
86 87 6.189859 ACTTTGATGCAGATTAAAGATGGGA 58.810 36.000 16.64 0.00 37.35 4.37
144 145 9.323985 AGACTGTTCTGATCTCTTATTTAATGC 57.676 33.333 0.00 0.00 0.00 3.56
146 147 8.887717 ACTGTTCTGATCTCTTATTTAATGCAC 58.112 33.333 0.00 0.00 0.00 4.57
147 148 8.213518 TGTTCTGATCTCTTATTTAATGCACC 57.786 34.615 0.00 0.00 0.00 5.01
152 153 4.703897 TCTCTTATTTAATGCACCGGGAG 58.296 43.478 6.32 0.00 0.00 4.30
154 155 5.071788 TCTCTTATTTAATGCACCGGGAGAT 59.928 40.000 6.32 0.00 0.00 2.75
158 159 8.598916 TCTTATTTAATGCACCGGGAGATTATA 58.401 33.333 6.32 0.60 0.00 0.98
162 163 8.472007 TTTAATGCACCGGGAGATTATAAATT 57.528 30.769 6.32 0.00 0.00 1.82
196 197 7.776618 TTATCGTGGATGTATGAGAATACCT 57.223 36.000 0.00 0.00 0.00 3.08
199 200 6.513180 TCGTGGATGTATGAGAATACCTTTC 58.487 40.000 0.00 0.00 0.00 2.62
200 201 6.097696 TCGTGGATGTATGAGAATACCTTTCA 59.902 38.462 0.00 0.00 0.00 2.69
201 202 6.761242 CGTGGATGTATGAGAATACCTTTCAA 59.239 38.462 0.00 0.00 0.00 2.69
204 205 9.699410 TGGATGTATGAGAATACCTTTCAAAAT 57.301 29.630 0.00 0.00 0.00 1.82
238 239 8.567285 AGATTCATGTAAACTTTAGAAGGGTG 57.433 34.615 0.00 0.00 0.00 4.61
239 240 8.164070 AGATTCATGTAAACTTTAGAAGGGTGT 58.836 33.333 0.00 0.00 0.00 4.16
241 242 9.975218 ATTCATGTAAACTTTAGAAGGGTGTAT 57.025 29.630 0.00 0.00 0.00 2.29
256 257 4.020485 AGGGTGTATAGAAGCAAAACTCGT 60.020 41.667 0.00 0.00 0.00 4.18
260 261 6.755141 GGTGTATAGAAGCAAAACTCGTCATA 59.245 38.462 0.00 0.00 0.00 2.15
279 280 9.104965 TCGTCATAAATACCTTTATTCAACCTG 57.895 33.333 0.00 0.00 35.77 4.00
280 281 7.855904 CGTCATAAATACCTTTATTCAACCTGC 59.144 37.037 0.00 0.00 35.77 4.85
290 291 7.141363 CCTTTATTCAACCTGCTTATGTATGC 58.859 38.462 0.00 0.00 0.00 3.14
296 297 3.480470 ACCTGCTTATGTATGCCATGTC 58.520 45.455 0.00 0.00 34.86 3.06
297 298 2.816087 CCTGCTTATGTATGCCATGTCC 59.184 50.000 0.00 0.00 34.86 4.02
310 311 3.563808 TGCCATGTCCTATTTCAATACGC 59.436 43.478 0.00 0.00 0.00 4.42
311 312 3.058224 GCCATGTCCTATTTCAATACGCC 60.058 47.826 0.00 0.00 0.00 5.68
317 318 4.275936 GTCCTATTTCAATACGCCTGCAAT 59.724 41.667 0.00 0.00 0.00 3.56
323 324 2.816672 TCAATACGCCTGCAATTGTGAA 59.183 40.909 7.40 0.00 33.35 3.18
324 325 3.254411 TCAATACGCCTGCAATTGTGAAA 59.746 39.130 7.40 0.00 33.35 2.69
326 327 2.818130 ACGCCTGCAATTGTGAAATT 57.182 40.000 7.40 0.00 0.00 1.82
327 328 2.406130 ACGCCTGCAATTGTGAAATTG 58.594 42.857 7.40 6.78 41.74 2.32
328 329 2.035704 ACGCCTGCAATTGTGAAATTGA 59.964 40.909 13.84 1.01 41.44 2.57
329 330 3.058450 CGCCTGCAATTGTGAAATTGAA 58.942 40.909 13.84 3.89 41.44 2.69
330 331 3.493877 CGCCTGCAATTGTGAAATTGAAA 59.506 39.130 13.84 2.31 41.44 2.69
334 335 6.218019 CCTGCAATTGTGAAATTGAAAGAGA 58.782 36.000 13.84 0.00 41.44 3.10
382 383 5.530171 GGCATCAGTTCACATCATCTGTTAT 59.470 40.000 0.00 0.00 35.29 1.89
385 386 8.066595 GCATCAGTTCACATCATCTGTTATAAC 58.933 37.037 8.75 8.75 35.29 1.89
416 417 4.817318 TTTGGTGCCAAAAACTTTCTCT 57.183 36.364 13.40 0.00 42.16 3.10
417 418 4.385358 TTGGTGCCAAAAACTTTCTCTC 57.615 40.909 0.47 0.00 32.44 3.20
420 421 5.197451 TGGTGCCAAAAACTTTCTCTCTTA 58.803 37.500 0.00 0.00 0.00 2.10
424 425 6.038271 GTGCCAAAAACTTTCTCTCTTACTCA 59.962 38.462 0.00 0.00 0.00 3.41
425 426 6.260936 TGCCAAAAACTTTCTCTCTTACTCAG 59.739 38.462 0.00 0.00 0.00 3.35
463 465 1.269444 CGGTATAGACGCAAGCGCTC 61.269 60.000 12.06 11.06 44.19 5.03
470 472 2.332104 AGACGCAAGCGCTCATATATG 58.668 47.619 12.06 5.02 44.19 1.78
491 493 2.688507 CGCGCATAAACTCATCCCTAT 58.311 47.619 8.75 0.00 0.00 2.57
497 499 5.389516 CGCATAAACTCATCCCTATAAACGC 60.390 44.000 0.00 0.00 0.00 4.84
499 501 6.149474 GCATAAACTCATCCCTATAAACGCAT 59.851 38.462 0.00 0.00 0.00 4.73
504 506 6.166279 ACTCATCCCTATAAACGCATACATG 58.834 40.000 0.00 0.00 0.00 3.21
525 527 6.147821 ACATGCATAAGCTAACCTTATAAGCG 59.852 38.462 6.99 3.49 43.27 4.68
528 530 3.553828 AAGCTAACCTTATAAGCGCCA 57.446 42.857 2.29 0.00 41.19 5.69
529 531 2.835027 AGCTAACCTTATAAGCGCCAC 58.165 47.619 2.29 0.00 41.19 5.01
530 532 2.169769 AGCTAACCTTATAAGCGCCACA 59.830 45.455 2.29 0.00 41.19 4.17
532 534 3.740141 GCTAACCTTATAAGCGCCACAGA 60.740 47.826 2.29 0.00 0.00 3.41
535 537 2.500098 ACCTTATAAGCGCCACAGAGAA 59.500 45.455 2.29 0.00 0.00 2.87
537 539 3.309954 CCTTATAAGCGCCACAGAGAAAC 59.690 47.826 2.29 0.00 0.00 2.78
539 541 2.543777 TAAGCGCCACAGAGAAACTT 57.456 45.000 2.29 0.00 0.00 2.66
544 546 2.866460 GCGCCACAGAGAAACTTAGTCA 60.866 50.000 0.00 0.00 0.00 3.41
546 548 2.739379 GCCACAGAGAAACTTAGTCAGC 59.261 50.000 0.00 0.00 0.00 4.26
554 556 9.757227 ACAGAGAAACTTAGTCAGCATATTATC 57.243 33.333 0.00 0.00 0.00 1.75
585 587 2.038557 ACGAAGTCACCATAAGCACCTT 59.961 45.455 0.00 0.00 29.74 3.50
591 593 4.041691 AGTCACCATAAGCACCTTGTAGTT 59.958 41.667 0.00 0.00 0.00 2.24
595 597 3.370978 CCATAAGCACCTTGTAGTTGACG 59.629 47.826 0.00 0.00 0.00 4.35
596 598 1.878953 AAGCACCTTGTAGTTGACGG 58.121 50.000 0.00 0.00 0.00 4.79
601 603 3.364964 GCACCTTGTAGTTGACGGAAATG 60.365 47.826 0.00 0.00 0.00 2.32
604 606 3.122948 CCTTGTAGTTGACGGAAATGTCG 59.877 47.826 0.00 0.00 41.87 4.35
606 608 1.392510 GTAGTTGACGGAAATGTCGCC 59.607 52.381 0.00 0.00 41.87 5.54
608 610 0.872388 GTTGACGGAAATGTCGCCTT 59.128 50.000 0.00 0.00 41.87 4.35
617 620 1.734163 AATGTCGCCTTCCCTAAACG 58.266 50.000 0.00 0.00 0.00 3.60
618 621 0.743345 ATGTCGCCTTCCCTAAACGC 60.743 55.000 0.00 0.00 0.00 4.84
619 622 2.125832 TCGCCTTCCCTAAACGCG 60.126 61.111 3.53 3.53 41.76 6.01
621 624 3.861263 GCCTTCCCTAAACGCGCG 61.861 66.667 30.96 30.96 0.00 6.86
624 627 2.785105 CTTCCCTAAACGCGCGTCG 61.785 63.158 37.77 25.47 45.38 5.12
636 639 1.874915 CGCGTCGCCGAAAATCCTA 60.875 57.895 12.44 0.00 35.63 2.94
637 640 1.213094 CGCGTCGCCGAAAATCCTAT 61.213 55.000 12.44 0.00 35.63 2.57
643 646 5.063060 GCGTCGCCGAAAATCCTATAATAAT 59.937 40.000 5.75 0.00 35.63 1.28
648 651 6.742718 CGCCGAAAATCCTATAATAATTGCAG 59.257 38.462 0.00 0.00 0.00 4.41
665 668 8.355169 ATAATTGCAGAAAAATGCGAGTATCAT 58.645 29.630 3.70 0.00 43.77 2.45
710 722 3.945921 TCAGTGTCCTCCTAACTATCACG 59.054 47.826 0.00 0.00 0.00 4.35
720 732 4.113354 CCTAACTATCACGAGTTTGCCTC 58.887 47.826 0.00 0.00 40.22 4.70
731 743 3.885358 GAGTTTGCCTCGGTAAAAACTG 58.115 45.455 14.14 0.00 41.62 3.16
743 755 7.753580 CCTCGGTAAAAACTGTTTTTGGATATC 59.246 37.037 31.08 16.60 42.41 1.63
745 757 6.525280 CGGTAAAAACTGTTTTTGGATATCCG 59.475 38.462 31.08 26.60 42.41 4.18
775 787 2.771089 TGCTCTGAGAAAAGACGCAAT 58.229 42.857 9.28 0.00 31.68 3.56
790 805 6.363577 AGACGCAATAATTCATGAATCGTT 57.636 33.333 24.30 17.79 30.11 3.85
805 820 3.733960 GTTTGGGCCCTCGCGAAC 61.734 66.667 25.70 15.34 40.72 3.95
806 821 4.257654 TTTGGGCCCTCGCGAACA 62.258 61.111 25.70 0.00 35.02 3.18
807 822 3.561120 TTTGGGCCCTCGCGAACAT 62.561 57.895 25.70 0.00 35.02 2.71
808 823 3.969250 TTGGGCCCTCGCGAACATC 62.969 63.158 25.70 0.08 35.02 3.06
810 825 4.814294 GGCCCTCGCGAACATCGT 62.814 66.667 11.33 0.00 42.81 3.73
811 826 2.103538 GCCCTCGCGAACATCGTA 59.896 61.111 11.33 0.00 42.81 3.43
812 827 1.299926 GCCCTCGCGAACATCGTAT 60.300 57.895 11.33 0.00 42.81 3.06
813 828 1.548973 GCCCTCGCGAACATCGTATG 61.549 60.000 11.33 0.00 42.81 2.39
814 829 0.939577 CCCTCGCGAACATCGTATGG 60.940 60.000 11.33 4.05 42.81 2.74
817 832 1.954146 CGCGAACATCGTATGGGGG 60.954 63.158 0.00 0.00 42.81 5.40
818 833 1.444250 GCGAACATCGTATGGGGGA 59.556 57.895 1.45 0.00 42.81 4.81
820 835 0.033504 CGAACATCGTATGGGGGAGG 59.966 60.000 0.00 0.00 34.72 4.30
821 836 0.250338 GAACATCGTATGGGGGAGGC 60.250 60.000 0.00 0.00 33.60 4.70
822 837 0.694444 AACATCGTATGGGGGAGGCT 60.694 55.000 0.00 0.00 33.60 4.58
823 838 0.694444 ACATCGTATGGGGGAGGCTT 60.694 55.000 0.00 0.00 33.60 4.35
828 843 0.321996 GTATGGGGGAGGCTTCGATC 59.678 60.000 0.00 0.00 0.00 3.69
846 861 0.108804 TCGCTTTCTAGCCTGTTCCG 60.109 55.000 0.00 0.00 44.86 4.30
1555 1576 3.580319 ACCAGGTGACCTTGCCCC 61.580 66.667 0.00 0.00 0.00 5.80
1644 1667 8.514330 TTGTTTCATCAAGTTAACTAGTGGTT 57.486 30.769 8.92 0.00 41.54 3.67
1646 1669 8.962679 TGTTTCATCAAGTTAACTAGTGGTTTT 58.037 29.630 8.92 0.00 39.17 2.43
1814 1837 5.619132 TGAGACCATGTCATGTCATATGT 57.381 39.130 11.84 6.14 34.60 2.29
1838 1861 8.472413 TGTCTGTATACTGTTAAATGGTACTCC 58.528 37.037 4.17 0.00 0.00 3.85
1839 1862 7.924947 GTCTGTATACTGTTAAATGGTACTCCC 59.075 40.741 4.17 0.00 0.00 4.30
1840 1863 7.842743 TCTGTATACTGTTAAATGGTACTCCCT 59.157 37.037 4.17 0.00 0.00 4.20
1841 1864 8.015185 TGTATACTGTTAAATGGTACTCCCTC 57.985 38.462 4.17 0.00 0.00 4.30
1842 1865 4.838904 ACTGTTAAATGGTACTCCCTCC 57.161 45.455 0.00 0.00 0.00 4.30
1843 1866 3.197116 ACTGTTAAATGGTACTCCCTCCG 59.803 47.826 0.00 0.00 0.00 4.63
1844 1867 3.175594 TGTTAAATGGTACTCCCTCCGT 58.824 45.455 0.00 0.00 0.00 4.69
1845 1868 3.583966 TGTTAAATGGTACTCCCTCCGTT 59.416 43.478 0.00 0.00 34.83 4.44
1846 1869 4.186926 GTTAAATGGTACTCCCTCCGTTC 58.813 47.826 0.00 0.00 32.55 3.95
1847 1870 1.201424 AATGGTACTCCCTCCGTTCC 58.799 55.000 0.00 0.00 0.00 3.62
1848 1871 0.338814 ATGGTACTCCCTCCGTTCCT 59.661 55.000 0.00 0.00 0.00 3.36
1849 1872 1.002069 TGGTACTCCCTCCGTTCCTA 58.998 55.000 0.00 0.00 0.00 2.94
1850 1873 1.358787 TGGTACTCCCTCCGTTCCTAA 59.641 52.381 0.00 0.00 0.00 2.69
1851 1874 2.225343 TGGTACTCCCTCCGTTCCTAAA 60.225 50.000 0.00 0.00 0.00 1.85
1852 1875 3.036819 GGTACTCCCTCCGTTCCTAAAT 58.963 50.000 0.00 0.00 0.00 1.40
1853 1876 4.218312 GGTACTCCCTCCGTTCCTAAATA 58.782 47.826 0.00 0.00 0.00 1.40
1854 1877 4.837298 GGTACTCCCTCCGTTCCTAAATAT 59.163 45.833 0.00 0.00 0.00 1.28
1855 1878 6.012745 GGTACTCCCTCCGTTCCTAAATATA 58.987 44.000 0.00 0.00 0.00 0.86
1856 1879 6.494835 GGTACTCCCTCCGTTCCTAAATATAA 59.505 42.308 0.00 0.00 0.00 0.98
1857 1880 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1858 1881 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1859 1882 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1860 1883 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1861 1884 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1862 1885 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1863 1886 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1864 1887 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1893 1916 9.796120 ACATTTTAAATGGAATACAACATACGG 57.204 29.630 20.00 0.00 0.00 4.02
1898 1921 9.833917 TTAAATGGAATACAACATACGGATGTA 57.166 29.630 15.10 0.00 45.93 2.29
1899 1922 8.918202 AAATGGAATACAACATACGGATGTAT 57.082 30.769 15.10 8.21 45.93 2.29
1936 1959 9.973450 TTTAGAGTATAGATTCACTCATCTTGC 57.027 33.333 4.70 0.00 42.99 4.01
1937 1960 7.838079 AGAGTATAGATTCACTCATCTTGCT 57.162 36.000 4.70 0.00 42.99 3.91
1938 1961 7.885297 AGAGTATAGATTCACTCATCTTGCTC 58.115 38.462 4.70 0.00 42.99 4.26
1939 1962 7.725397 AGAGTATAGATTCACTCATCTTGCTCT 59.275 37.037 4.70 0.00 42.99 4.09
1940 1963 7.660112 AGTATAGATTCACTCATCTTGCTCTG 58.340 38.462 0.00 0.00 35.08 3.35
1941 1964 4.822685 AGATTCACTCATCTTGCTCTGT 57.177 40.909 0.00 0.00 28.19 3.41
1942 1965 5.929058 AGATTCACTCATCTTGCTCTGTA 57.071 39.130 0.00 0.00 28.19 2.74
1943 1966 6.482898 AGATTCACTCATCTTGCTCTGTAT 57.517 37.500 0.00 0.00 28.19 2.29
1944 1967 6.282167 AGATTCACTCATCTTGCTCTGTATG 58.718 40.000 0.00 0.00 28.19 2.39
1945 1968 5.411831 TTCACTCATCTTGCTCTGTATGT 57.588 39.130 0.00 0.00 0.00 2.29
1946 1969 6.530019 TTCACTCATCTTGCTCTGTATGTA 57.470 37.500 0.00 0.00 0.00 2.29
1947 1970 6.141560 TCACTCATCTTGCTCTGTATGTAG 57.858 41.667 0.00 0.00 0.00 2.74
1948 1971 5.654209 TCACTCATCTTGCTCTGTATGTAGT 59.346 40.000 0.00 0.00 0.00 2.73
1949 1972 5.976534 CACTCATCTTGCTCTGTATGTAGTC 59.023 44.000 0.00 0.00 0.00 2.59
1950 1973 5.654209 ACTCATCTTGCTCTGTATGTAGTCA 59.346 40.000 0.00 0.00 0.00 3.41
1951 1974 5.895928 TCATCTTGCTCTGTATGTAGTCAC 58.104 41.667 0.00 0.00 0.00 3.67
1952 1975 5.654209 TCATCTTGCTCTGTATGTAGTCACT 59.346 40.000 0.00 0.00 0.00 3.41
1953 1976 5.984695 TCTTGCTCTGTATGTAGTCACTT 57.015 39.130 0.00 0.00 0.00 3.16
1954 1977 5.714047 TCTTGCTCTGTATGTAGTCACTTG 58.286 41.667 0.00 0.00 0.00 3.16
1955 1978 5.243954 TCTTGCTCTGTATGTAGTCACTTGT 59.756 40.000 0.00 0.00 0.00 3.16
1956 1979 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
1957 1980 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
1958 1981 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
1959 1982 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
1960 1983 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
1961 1984 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
1962 1985 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
1963 1986 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
1964 1987 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
1965 1988 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
1966 1989 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1968 1991 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
1969 1992 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
1972 1995 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
1973 1996 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
1974 1997 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
2289 2321 2.485426 CAGCAATGAATCACTGTTCGGT 59.515 45.455 0.00 0.00 0.00 4.69
2323 2356 7.364149 TGCTGAATTATTATTTTCATGCCCT 57.636 32.000 0.00 0.00 31.83 5.19
2375 2408 0.108138 AATCCGAAGAAGGTGCTCCG 60.108 55.000 0.00 0.00 39.05 4.63
2559 2592 0.178929 AGAGGAGTTCCACGAAGGGT 60.179 55.000 0.28 0.00 38.89 4.34
2567 2600 1.100510 TCCACGAAGGGTATGTCGAG 58.899 55.000 0.00 0.00 39.64 4.04
2596 2629 2.774687 GTGAATCGTTACTGGTGGGTT 58.225 47.619 0.00 0.00 0.00 4.11
2600 2634 0.107081 TCGTTACTGGTGGGTTGTGG 59.893 55.000 0.00 0.00 0.00 4.17
2669 2704 9.497030 GTATTAGATCGTGCTGTAATCTGATAG 57.503 37.037 0.00 0.00 32.13 2.08
2910 2945 3.766591 CAGACAGGGTTATGACAGTCTCT 59.233 47.826 1.31 0.00 34.11 3.10
2913 2948 5.308237 AGACAGGGTTATGACAGTCTCTTTT 59.692 40.000 1.31 0.00 32.21 2.27
3114 3149 0.957888 TTCAATGTGGCGCCGATTCA 60.958 50.000 23.90 17.96 0.00 2.57
3737 3774 7.337689 CCAACAAAACATGATAAGAGGATGAGA 59.662 37.037 0.00 0.00 0.00 3.27
3804 3842 0.842030 ACCTCCCTTCATGAGCACCA 60.842 55.000 0.00 0.00 0.00 4.17
3910 3948 2.430465 ACAGTTGCTAGCATTCTGTGG 58.570 47.619 34.43 20.74 38.75 4.17
4045 4083 9.922305 CTATTTGTTGCTAAACTGCTAATACTC 57.078 33.333 0.00 0.00 37.19 2.59
4322 4360 7.920682 GTCTGTATTATTTGGTTAAAGGCATGG 59.079 37.037 0.00 0.00 0.00 3.66
4452 4490 1.200760 ATGCCACCACTACCTCAGCA 61.201 55.000 0.00 0.00 0.00 4.41
4462 4501 2.038557 ACTACCTCAGCATTGAACCGTT 59.961 45.455 0.00 0.00 31.69 4.44
4477 4516 4.277174 TGAACCGTTTGTGCATACTTTGAT 59.723 37.500 0.00 0.00 0.00 2.57
4578 4621 2.806288 CAGCCCGACTGTTTTATTCG 57.194 50.000 0.00 0.00 41.86 3.34
4597 4640 4.695217 TCGGTGAAGTTTTGAATATGCC 57.305 40.909 0.00 0.00 0.00 4.40
4668 4719 7.755822 CAGTGGACAGTAATAGTACTTCTGTTC 59.244 40.741 17.27 16.32 38.58 3.18
4857 4908 3.421955 GCGCAGTCGAACTTTTCTAACTC 60.422 47.826 0.30 0.00 38.10 3.01
4865 4916 6.922407 GTCGAACTTTTCTAACTCTAACCACT 59.078 38.462 0.00 0.00 0.00 4.00
4904 4955 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4908 4959 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
4920 4990 8.621487 CATAATATAAGAGCATTCAAAAACGCG 58.379 33.333 3.53 3.53 0.00 6.01
4932 5002 7.617122 GCATTCAAAAACGCGCTTATATTATGG 60.617 37.037 5.73 0.00 0.00 2.74
5059 5129 5.523552 ACAAAAAGTTAACAGCCAAAGATGC 59.476 36.000 8.61 0.00 30.46 3.91
5061 5131 1.200020 AGTTAACAGCCAAAGATGCGC 59.800 47.619 8.61 0.00 30.46 6.09
5062 5132 0.167908 TTAACAGCCAAAGATGCGCG 59.832 50.000 0.00 0.00 30.46 6.86
5063 5133 0.953471 TAACAGCCAAAGATGCGCGT 60.953 50.000 8.43 0.00 30.46 6.01
5087 5160 4.527816 TGGAGGCTGTGCAAATTTCTAAAT 59.472 37.500 0.00 0.00 0.00 1.40
5113 5186 8.537728 TGTAATCCATTTCCAAGCAGATAAAT 57.462 30.769 0.00 0.00 0.00 1.40
5201 5276 4.631377 TCTTTCTTAATGTGAGTGGCATCG 59.369 41.667 0.00 0.00 0.00 3.84
5210 5285 3.071457 TGTGAGTGGCATCGGATATTCAT 59.929 43.478 0.00 0.00 0.00 2.57
5233 5308 8.375506 TCATCTACACAGTTGGATTATATTCCC 58.624 37.037 10.47 0.00 34.67 3.97
5387 5565 5.944599 CCCTGATTCTGATATGGAATTGGAG 59.055 44.000 14.84 7.94 34.09 3.86
5414 5592 1.151668 CACCTTTGGAAGACTCAGCG 58.848 55.000 0.00 0.00 0.00 5.18
5437 5615 9.567848 AGCGAGGTATTTATTTATTTTGTTGTG 57.432 29.630 0.00 0.00 0.00 3.33
5438 5616 9.562583 GCGAGGTATTTATTTATTTTGTTGTGA 57.437 29.630 0.00 0.00 0.00 3.58
5588 5768 1.803555 GCTGGAGCTGAGACAAAAGAC 59.196 52.381 0.00 0.00 38.21 3.01
5790 6191 2.301870 TCCACCGACTATTGTTTGCTCT 59.698 45.455 0.00 0.00 0.00 4.09
5873 6276 4.418013 TGATTGTATGCAACTTGTTCGG 57.582 40.909 0.00 0.00 37.44 4.30
5901 6305 5.335426 CCTTGGTGCTATGCATTATGCTAAG 60.335 44.000 18.44 15.12 45.31 2.18
5973 6381 1.967066 AGAGGATCAGAACCTATGGCG 59.033 52.381 0.00 0.00 37.93 5.69
6037 6447 4.651778 TCCCTTCCTATTTGTGAACTGTG 58.348 43.478 0.00 0.00 0.00 3.66
6092 6502 3.052944 TGGCCAGGCTTATCTAACCAAAT 60.053 43.478 12.43 0.00 0.00 2.32
6158 6568 2.896801 CGCTAATGCCATGGCCGTC 61.897 63.158 33.44 16.33 41.09 4.79
6414 6824 3.058224 GCAGAATTTTCTTGGCTACGTGT 60.058 43.478 0.00 0.00 34.74 4.49
6467 6878 1.626825 TCTTTTCCCGGTAGGTTCCTG 59.373 52.381 0.00 0.00 36.75 3.86
6468 6879 1.626825 CTTTTCCCGGTAGGTTCCTGA 59.373 52.381 0.00 0.00 36.75 3.86
6469 6880 1.961133 TTTCCCGGTAGGTTCCTGAT 58.039 50.000 0.00 0.00 36.75 2.90
6470 6881 2.852714 TTCCCGGTAGGTTCCTGATA 57.147 50.000 0.00 0.00 36.75 2.15
6471 6882 3.339713 TTCCCGGTAGGTTCCTGATAT 57.660 47.619 0.00 0.00 36.75 1.63
6474 6885 3.389983 TCCCGGTAGGTTCCTGATATTTG 59.610 47.826 0.00 0.00 36.75 2.32
6476 6887 3.139077 CGGTAGGTTCCTGATATTTGGC 58.861 50.000 1.12 0.00 0.00 4.52
6477 6888 3.181454 CGGTAGGTTCCTGATATTTGGCT 60.181 47.826 1.12 0.00 0.00 4.75
6512 6923 1.567649 TCCGTACCCTGGAGTAGTCAT 59.432 52.381 0.00 0.00 0.00 3.06
6544 6955 5.305644 TGTTTTTCTCTAGCTCACCTTCTCT 59.694 40.000 0.00 0.00 0.00 3.10
6545 6956 6.183361 TGTTTTTCTCTAGCTCACCTTCTCTT 60.183 38.462 0.00 0.00 0.00 2.85
6653 7067 3.281341 TGCTTGCACGAACCAAAATAG 57.719 42.857 0.00 0.00 0.00 1.73
6654 7068 1.985684 GCTTGCACGAACCAAAATAGC 59.014 47.619 0.00 0.00 0.00 2.97
6687 7102 5.505286 GCTACATAAATAGCTGCTGTTGTG 58.495 41.667 13.43 15.89 43.62 3.33
6689 7104 5.300969 ACATAAATAGCTGCTGTTGTGTG 57.699 39.130 21.09 17.16 0.00 3.82
6701 7116 1.864711 TGTTGTGTGTTAGCTCTTCGC 59.135 47.619 0.00 0.00 39.57 4.70
6702 7117 1.194772 GTTGTGTGTTAGCTCTTCGCC 59.805 52.381 0.00 0.00 40.39 5.54
6703 7118 0.320421 TGTGTGTTAGCTCTTCGCCC 60.320 55.000 0.00 0.00 40.39 6.13
6795 7211 0.032678 CTCGCCGGAGATTAGCATGT 59.967 55.000 8.83 0.00 43.27 3.21
6810 7226 1.587350 ATGTCACGATGAGCGAGCG 60.587 57.895 0.00 0.00 44.57 5.03
6862 7974 1.150536 GGGCAGGGTCAGTGTGAAA 59.849 57.895 0.00 0.00 0.00 2.69
6886 8041 1.169661 ACATCGTCAAAAAGCGGCCA 61.170 50.000 2.24 0.00 0.00 5.36
6930 8085 2.101415 TCGACTACTCATGGCTCATTGG 59.899 50.000 0.00 0.00 0.00 3.16
6981 8136 3.993234 GATCGCATCACGCTGCCG 61.993 66.667 0.00 0.00 43.23 5.69
7006 8161 1.549037 CCCCCGTCCCAGAAAAATTCA 60.549 52.381 0.00 0.00 0.00 2.57
7009 8164 2.029380 CCCGTCCCAGAAAAATTCAACC 60.029 50.000 0.00 0.00 0.00 3.77
7089 8649 1.559682 ACACTCACCCGAGCCAAATAT 59.440 47.619 0.00 0.00 43.66 1.28
7096 8656 2.630580 ACCCGAGCCAAATATCTCTCTC 59.369 50.000 0.00 0.00 0.00 3.20
7098 8658 3.056891 CCCGAGCCAAATATCTCTCTCTC 60.057 52.174 0.00 0.00 0.00 3.20
7167 8727 1.072173 CCAGTCCACACTCCACAATCA 59.928 52.381 0.00 0.00 0.00 2.57
7231 8791 2.036256 AATGGCAGCACTGTCCCC 59.964 61.111 0.00 0.00 33.48 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.497161 ACTGATGTAGGGTAGGGCAC 58.503 55.000 0.00 0.00 0.00 5.01
10 11 2.263895 AACTGATGTAGGGTAGGGCA 57.736 50.000 0.00 0.00 0.00 5.36
11 12 3.279434 CAAAACTGATGTAGGGTAGGGC 58.721 50.000 0.00 0.00 0.00 5.19
12 13 3.054361 AGCAAAACTGATGTAGGGTAGGG 60.054 47.826 0.00 0.00 0.00 3.53
13 14 4.222124 AGCAAAACTGATGTAGGGTAGG 57.778 45.455 0.00 0.00 0.00 3.18
36 37 1.002624 CTTTTCTAGGGGTGCGCCA 60.003 57.895 19.98 0.00 36.17 5.69
39 40 2.779506 AGAAACTTTTCTAGGGGTGCG 58.220 47.619 2.25 0.00 45.17 5.34
52 53 7.992754 AATCTGCATCAAAGTCTAGAAACTT 57.007 32.000 0.00 0.00 41.20 2.66
55 56 9.725019 TCTTTAATCTGCATCAAAGTCTAGAAA 57.275 29.630 0.00 0.00 31.44 2.52
58 59 8.557864 CCATCTTTAATCTGCATCAAAGTCTAG 58.442 37.037 0.00 0.00 31.44 2.43
63 64 6.704289 TCCCATCTTTAATCTGCATCAAAG 57.296 37.500 0.00 0.00 0.00 2.77
66 67 8.219868 TCTAATTCCCATCTTTAATCTGCATCA 58.780 33.333 0.00 0.00 0.00 3.07
84 85 8.635765 TTATTGCATGGGTATCTTCTAATTCC 57.364 34.615 0.00 0.00 0.00 3.01
121 122 8.341173 GGTGCATTAAATAAGAGATCAGAACAG 58.659 37.037 0.00 0.00 0.00 3.16
136 137 8.650143 ATTTATAATCTCCCGGTGCATTAAAT 57.350 30.769 0.00 0.00 0.00 1.40
140 141 6.976934 AAATTTATAATCTCCCGGTGCATT 57.023 33.333 0.00 0.00 0.00 3.56
171 172 8.190326 AGGTATTCTCATACATCCACGATAAA 57.810 34.615 0.00 0.00 37.59 1.40
173 174 7.776618 AAGGTATTCTCATACATCCACGATA 57.223 36.000 0.00 0.00 37.59 2.92
230 231 6.128138 AGTTTTGCTTCTATACACCCTTCT 57.872 37.500 0.00 0.00 0.00 2.85
231 232 5.063564 CGAGTTTTGCTTCTATACACCCTTC 59.936 44.000 0.00 0.00 0.00 3.46
233 234 4.020485 ACGAGTTTTGCTTCTATACACCCT 60.020 41.667 0.00 0.00 0.00 4.34
235 236 4.927425 TGACGAGTTTTGCTTCTATACACC 59.073 41.667 0.00 0.00 0.00 4.16
236 237 6.648725 ATGACGAGTTTTGCTTCTATACAC 57.351 37.500 0.00 0.00 0.00 2.90
241 242 8.038944 AGGTATTTATGACGAGTTTTGCTTCTA 58.961 33.333 0.00 0.00 0.00 2.10
242 243 6.879458 AGGTATTTATGACGAGTTTTGCTTCT 59.121 34.615 0.00 0.00 0.00 2.85
243 244 7.073342 AGGTATTTATGACGAGTTTTGCTTC 57.927 36.000 0.00 0.00 0.00 3.86
256 257 9.474313 AAGCAGGTTGAATAAAGGTATTTATGA 57.526 29.630 0.00 0.00 40.05 2.15
260 261 9.255029 ACATAAGCAGGTTGAATAAAGGTATTT 57.745 29.630 0.00 0.00 29.69 1.40
273 274 3.633525 ACATGGCATACATAAGCAGGTTG 59.366 43.478 0.00 0.00 37.84 3.77
279 280 6.430925 TGAAATAGGACATGGCATACATAAGC 59.569 38.462 0.00 0.00 37.84 3.09
280 281 7.984422 TGAAATAGGACATGGCATACATAAG 57.016 36.000 0.00 0.00 37.84 1.73
290 291 4.214119 CAGGCGTATTGAAATAGGACATGG 59.786 45.833 10.38 0.00 37.27 3.66
296 297 4.836125 ATTGCAGGCGTATTGAAATAGG 57.164 40.909 0.00 0.00 0.00 2.57
297 298 5.456497 CACAATTGCAGGCGTATTGAAATAG 59.544 40.000 19.28 6.13 34.28 1.73
310 311 6.218019 TCTCTTTCAATTTCACAATTGCAGG 58.782 36.000 5.05 0.00 46.28 4.85
311 312 7.703298 TTCTCTTTCAATTTCACAATTGCAG 57.297 32.000 5.05 0.00 46.28 4.41
317 318 6.538381 GCCCTTTTTCTCTTTCAATTTCACAA 59.462 34.615 0.00 0.00 0.00 3.33
323 324 7.936496 TTTTTGCCCTTTTTCTCTTTCAATT 57.064 28.000 0.00 0.00 0.00 2.32
351 352 4.768448 TGATGTGAACTGATGCCTTGAATT 59.232 37.500 0.00 0.00 0.00 2.17
352 353 4.338012 TGATGTGAACTGATGCCTTGAAT 58.662 39.130 0.00 0.00 0.00 2.57
353 354 3.753815 TGATGTGAACTGATGCCTTGAA 58.246 40.909 0.00 0.00 0.00 2.69
354 355 3.421919 TGATGTGAACTGATGCCTTGA 57.578 42.857 0.00 0.00 0.00 3.02
355 356 3.945921 AGATGATGTGAACTGATGCCTTG 59.054 43.478 0.00 0.00 0.00 3.61
361 362 9.671279 TTGTTATAACAGATGATGTGAACTGAT 57.329 29.630 17.36 0.00 43.00 2.90
362 363 9.500785 TTTGTTATAACAGATGATGTGAACTGA 57.499 29.630 17.36 0.00 43.00 3.41
382 383 8.561738 TTTTGGCACCAAAATACTTTTTGTTA 57.438 26.923 20.86 0.00 46.80 2.41
440 441 1.636988 GCTTGCGTCTATACCGTGTT 58.363 50.000 0.00 0.00 0.00 3.32
441 442 0.524816 CGCTTGCGTCTATACCGTGT 60.525 55.000 6.86 0.00 0.00 4.49
442 443 1.808234 GCGCTTGCGTCTATACCGTG 61.808 60.000 16.38 0.00 0.00 4.94
443 444 1.588139 GCGCTTGCGTCTATACCGT 60.588 57.895 16.38 0.00 0.00 4.83
444 445 1.269444 GAGCGCTTGCGTCTATACCG 61.269 60.000 13.26 0.00 45.69 4.02
445 446 0.248907 TGAGCGCTTGCGTCTATACC 60.249 55.000 13.26 0.00 45.69 2.73
446 447 1.772182 ATGAGCGCTTGCGTCTATAC 58.228 50.000 13.26 0.00 45.69 1.47
447 448 3.850122 ATATGAGCGCTTGCGTCTATA 57.150 42.857 13.26 11.75 45.69 1.31
448 449 2.732412 ATATGAGCGCTTGCGTCTAT 57.268 45.000 13.26 10.15 45.69 1.98
449 450 3.501950 CATATATGAGCGCTTGCGTCTA 58.498 45.455 13.26 0.00 45.69 2.59
463 465 4.582441 TGAGTTTATGCGCGCATATATG 57.418 40.909 43.80 8.45 38.52 1.78
470 472 1.160329 AGGGATGAGTTTATGCGCGC 61.160 55.000 27.26 27.26 0.00 6.86
472 474 5.389516 CGTTTATAGGGATGAGTTTATGCGC 60.390 44.000 0.00 0.00 0.00 6.09
499 501 7.330946 CGCTTATAAGGTTAGCTTATGCATGTA 59.669 37.037 22.29 3.11 42.74 2.29
504 506 4.142881 GGCGCTTATAAGGTTAGCTTATGC 60.143 45.833 22.29 17.41 40.05 3.14
507 509 4.141892 TGTGGCGCTTATAAGGTTAGCTTA 60.142 41.667 14.28 6.34 32.80 3.09
509 511 2.169769 TGTGGCGCTTATAAGGTTAGCT 59.830 45.455 14.28 0.00 32.80 3.32
510 512 2.544267 CTGTGGCGCTTATAAGGTTAGC 59.456 50.000 14.28 0.00 0.00 3.09
511 513 4.051922 CTCTGTGGCGCTTATAAGGTTAG 58.948 47.826 14.28 0.00 0.00 2.34
514 516 2.108168 TCTCTGTGGCGCTTATAAGGT 58.892 47.619 14.28 0.00 0.00 3.50
516 518 4.184629 AGTTTCTCTGTGGCGCTTATAAG 58.815 43.478 7.64 8.20 0.00 1.73
517 519 4.202245 AGTTTCTCTGTGGCGCTTATAA 57.798 40.909 7.64 0.00 0.00 0.98
521 523 2.224305 ACTAAGTTTCTCTGTGGCGCTT 60.224 45.455 7.64 0.00 0.00 4.68
525 527 2.739379 GCTGACTAAGTTTCTCTGTGGC 59.261 50.000 0.00 0.00 0.00 5.01
528 530 9.757227 GATAATATGCTGACTAAGTTTCTCTGT 57.243 33.333 0.00 0.00 0.00 3.41
529 531 9.979578 AGATAATATGCTGACTAAGTTTCTCTG 57.020 33.333 0.00 0.00 0.00 3.35
539 541 9.481340 GTCAATGTCAAGATAATATGCTGACTA 57.519 33.333 10.72 1.97 0.00 2.59
544 546 7.712639 ACTTCGTCAATGTCAAGATAATATGCT 59.287 33.333 0.00 0.00 0.00 3.79
546 548 9.034544 TGACTTCGTCAATGTCAAGATAATATG 57.965 33.333 0.00 0.00 39.78 1.78
554 556 3.130633 TGGTGACTTCGTCAATGTCAAG 58.869 45.455 0.00 0.00 44.49 3.02
557 559 4.201724 GCTTATGGTGACTTCGTCAATGTC 60.202 45.833 0.00 0.00 44.49 3.06
559 561 3.684305 TGCTTATGGTGACTTCGTCAATG 59.316 43.478 0.00 0.00 44.49 2.82
563 565 2.000447 GGTGCTTATGGTGACTTCGTC 59.000 52.381 0.00 0.00 0.00 4.20
573 575 3.370978 CGTCAACTACAAGGTGCTTATGG 59.629 47.826 0.00 0.00 31.59 2.74
574 576 3.370978 CCGTCAACTACAAGGTGCTTATG 59.629 47.826 0.00 0.00 31.59 1.90
575 577 3.259876 TCCGTCAACTACAAGGTGCTTAT 59.740 43.478 0.00 0.00 31.59 1.73
576 578 2.629137 TCCGTCAACTACAAGGTGCTTA 59.371 45.455 0.00 0.00 31.59 3.09
577 579 1.414919 TCCGTCAACTACAAGGTGCTT 59.585 47.619 0.00 0.00 31.59 3.91
578 580 1.045407 TCCGTCAACTACAAGGTGCT 58.955 50.000 0.00 0.00 31.59 4.40
582 584 3.122948 CGACATTTCCGTCAACTACAAGG 59.877 47.826 0.00 0.00 35.54 3.61
585 587 2.063266 GCGACATTTCCGTCAACTACA 58.937 47.619 0.00 0.00 35.54 2.74
591 593 0.672401 GGAAGGCGACATTTCCGTCA 60.672 55.000 0.00 0.00 35.54 4.35
595 597 2.413310 TTAGGGAAGGCGACATTTCC 57.587 50.000 0.52 0.52 41.71 3.13
596 598 2.095372 CGTTTAGGGAAGGCGACATTTC 59.905 50.000 0.00 0.00 0.00 2.17
601 603 3.482809 GCGTTTAGGGAAGGCGAC 58.517 61.111 0.00 0.00 39.09 5.19
604 606 3.861263 CGCGCGTTTAGGGAAGGC 61.861 66.667 24.19 0.00 43.78 4.35
606 608 2.785105 CGACGCGCGTTTAGGGAAG 61.785 63.158 38.03 16.07 34.64 3.46
621 624 6.741358 GCAATTATTATAGGATTTTCGGCGAC 59.259 38.462 10.16 0.00 0.00 5.19
624 627 7.816640 TCTGCAATTATTATAGGATTTTCGGC 58.183 34.615 0.00 0.00 0.00 5.54
637 640 9.663904 GATACTCGCATTTTTCTGCAATTATTA 57.336 29.630 0.00 0.00 42.40 0.98
643 646 5.565592 ATGATACTCGCATTTTTCTGCAA 57.434 34.783 0.00 0.00 42.40 4.08
678 681 9.386122 AGTTAGGAGGACACTGATATATTCATT 57.614 33.333 0.00 0.00 32.72 2.57
686 689 5.763698 CGTGATAGTTAGGAGGACACTGATA 59.236 44.000 0.00 0.00 0.00 2.15
687 690 4.580995 CGTGATAGTTAGGAGGACACTGAT 59.419 45.833 0.00 0.00 0.00 2.90
688 691 3.945921 CGTGATAGTTAGGAGGACACTGA 59.054 47.826 0.00 0.00 0.00 3.41
690 693 4.200874 CTCGTGATAGTTAGGAGGACACT 58.799 47.826 0.00 0.00 0.00 3.55
691 694 3.946558 ACTCGTGATAGTTAGGAGGACAC 59.053 47.826 0.00 0.00 35.09 3.67
698 701 4.113354 GAGGCAAACTCGTGATAGTTAGG 58.887 47.826 0.00 0.00 38.76 2.69
710 722 3.314357 ACAGTTTTTACCGAGGCAAACTC 59.686 43.478 10.15 0.00 37.36 3.01
720 732 6.525280 CGGATATCCAAAAACAGTTTTTACCG 59.475 38.462 21.11 20.88 40.65 4.02
721 733 7.372714 ACGGATATCCAAAAACAGTTTTTACC 58.627 34.615 21.11 15.59 40.65 2.85
731 743 4.703093 TCCCTTCAACGGATATCCAAAAAC 59.297 41.667 21.70 0.00 35.14 2.43
743 755 0.250234 TCAGAGCATCCCTTCAACGG 59.750 55.000 0.00 0.00 33.66 4.44
745 757 3.340814 TTCTCAGAGCATCCCTTCAAC 57.659 47.619 0.00 0.00 33.66 3.18
775 787 3.383185 GGGCCCAAACGATTCATGAATTA 59.617 43.478 21.57 0.00 0.00 1.40
790 805 3.969250 GATGTTCGCGAGGGCCCAA 62.969 63.158 27.56 5.84 35.02 4.12
805 820 0.035458 GAAGCCTCCCCCATACGATG 59.965 60.000 0.00 0.00 0.00 3.84
806 821 1.472662 CGAAGCCTCCCCCATACGAT 61.473 60.000 0.00 0.00 0.00 3.73
807 822 2.131709 CGAAGCCTCCCCCATACGA 61.132 63.158 0.00 0.00 0.00 3.43
808 823 1.472662 ATCGAAGCCTCCCCCATACG 61.473 60.000 0.00 0.00 0.00 3.06
809 824 0.321996 GATCGAAGCCTCCCCCATAC 59.678 60.000 0.00 0.00 0.00 2.39
810 825 1.185618 CGATCGAAGCCTCCCCCATA 61.186 60.000 10.26 0.00 0.00 2.74
811 826 2.511452 CGATCGAAGCCTCCCCCAT 61.511 63.158 10.26 0.00 0.00 4.00
812 827 3.154473 CGATCGAAGCCTCCCCCA 61.154 66.667 10.26 0.00 0.00 4.96
813 828 4.610714 GCGATCGAAGCCTCCCCC 62.611 72.222 21.57 0.00 0.00 5.40
814 829 2.595009 AAAGCGATCGAAGCCTCCCC 62.595 60.000 21.57 0.00 34.64 4.81
817 832 2.389998 CTAGAAAGCGATCGAAGCCTC 58.610 52.381 21.57 7.13 34.64 4.70
818 833 1.537135 GCTAGAAAGCGATCGAAGCCT 60.537 52.381 21.57 12.02 39.39 4.58
846 861 1.443828 GGAGAGGGAGGTGAATCGC 59.556 63.158 0.00 0.00 0.00 4.58
904 919 3.584868 AAGGGTAGGTCACGCGCAC 62.585 63.158 5.73 2.39 44.56 5.34
1555 1576 1.600957 CCTAATGACATGAGCAAGGCG 59.399 52.381 0.00 0.00 0.00 5.52
1814 1837 7.842743 AGGGAGTACCATTTAACAGTATACAGA 59.157 37.037 5.50 0.00 43.89 3.41
1831 1854 2.149973 TTAGGAACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
1832 1855 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
1833 1856 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1834 1857 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1835 1858 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1836 1859 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1837 1860 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1838 1861 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1867 1890 9.796120 CCGTATGTTGTATTCCATTTAAAATGT 57.204 29.630 0.00 0.00 0.00 2.71
1871 1894 9.179909 ACATCCGTATGTTGTATTCCATTTAAA 57.820 29.630 0.00 0.00 44.07 1.52
1872 1895 8.740123 ACATCCGTATGTTGTATTCCATTTAA 57.260 30.769 0.00 0.00 44.07 1.52
1874 1897 8.918202 ATACATCCGTATGTTGTATTCCATTT 57.082 30.769 0.00 0.00 44.07 2.32
1910 1933 9.973450 GCAAGATGAGTGAATCTATACTCTAAA 57.027 33.333 0.00 0.00 42.86 1.85
1911 1934 9.360901 AGCAAGATGAGTGAATCTATACTCTAA 57.639 33.333 0.00 0.00 42.86 2.10
1912 1935 8.932434 AGCAAGATGAGTGAATCTATACTCTA 57.068 34.615 0.00 0.00 42.86 2.43
1913 1936 7.725397 AGAGCAAGATGAGTGAATCTATACTCT 59.275 37.037 0.00 7.31 42.86 3.24
1914 1937 7.809331 CAGAGCAAGATGAGTGAATCTATACTC 59.191 40.741 0.00 0.00 42.77 2.59
1915 1938 7.287466 ACAGAGCAAGATGAGTGAATCTATACT 59.713 37.037 0.00 0.00 35.83 2.12
1916 1939 7.432869 ACAGAGCAAGATGAGTGAATCTATAC 58.567 38.462 0.00 0.00 35.83 1.47
1917 1940 7.594351 ACAGAGCAAGATGAGTGAATCTATA 57.406 36.000 0.00 0.00 35.83 1.31
1918 1941 6.482898 ACAGAGCAAGATGAGTGAATCTAT 57.517 37.500 0.00 0.00 35.83 1.98
1919 1942 5.929058 ACAGAGCAAGATGAGTGAATCTA 57.071 39.130 0.00 0.00 35.83 1.98
1920 1943 4.822685 ACAGAGCAAGATGAGTGAATCT 57.177 40.909 0.00 0.00 38.59 2.40
1921 1944 6.047870 ACATACAGAGCAAGATGAGTGAATC 58.952 40.000 0.00 0.00 0.00 2.52
1922 1945 5.987098 ACATACAGAGCAAGATGAGTGAAT 58.013 37.500 0.00 0.00 0.00 2.57
1923 1946 5.411831 ACATACAGAGCAAGATGAGTGAA 57.588 39.130 0.00 0.00 0.00 3.18
1924 1947 5.654209 ACTACATACAGAGCAAGATGAGTGA 59.346 40.000 0.00 0.00 0.00 3.41
1925 1948 5.900425 ACTACATACAGAGCAAGATGAGTG 58.100 41.667 0.00 0.00 0.00 3.51
1926 1949 5.654209 TGACTACATACAGAGCAAGATGAGT 59.346 40.000 0.00 0.00 0.00 3.41
1927 1950 5.976534 GTGACTACATACAGAGCAAGATGAG 59.023 44.000 0.00 0.00 0.00 2.90
1928 1951 5.654209 AGTGACTACATACAGAGCAAGATGA 59.346 40.000 0.00 0.00 0.00 2.92
1929 1952 5.900425 AGTGACTACATACAGAGCAAGATG 58.100 41.667 0.00 0.00 0.00 2.90
1930 1953 6.071108 ACAAGTGACTACATACAGAGCAAGAT 60.071 38.462 0.00 0.00 0.00 2.40
1931 1954 5.243954 ACAAGTGACTACATACAGAGCAAGA 59.756 40.000 0.00 0.00 0.00 3.02
1932 1955 5.473931 ACAAGTGACTACATACAGAGCAAG 58.526 41.667 0.00 0.00 0.00 4.01
1933 1956 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
1934 1957 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
1935 1958 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
1936 1959 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
1937 1960 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
1938 1961 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
1939 1962 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
1940 1963 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1942 1965 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
1943 1966 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
1946 1969 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
1947 1970 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
1948 1971 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
1966 1989 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1967 1990 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1968 1991 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1969 1992 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1970 1993 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1971 1994 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1972 1995 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1973 1996 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1976 1999 9.643735 CTATATACTCCCTCCGTTCCTAAATAT 57.356 37.037 0.00 0.00 0.00 1.28
1977 2000 8.618385 ACTATATACTCCCTCCGTTCCTAAATA 58.382 37.037 0.00 0.00 0.00 1.40
1978 2001 7.477008 ACTATATACTCCCTCCGTTCCTAAAT 58.523 38.462 0.00 0.00 0.00 1.40
1979 2002 6.856757 ACTATATACTCCCTCCGTTCCTAAA 58.143 40.000 0.00 0.00 0.00 1.85
1980 2003 6.460103 ACTATATACTCCCTCCGTTCCTAA 57.540 41.667 0.00 0.00 0.00 2.69
1981 2004 6.460103 AACTATATACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 0.00 2.94
1982 2005 5.336491 AACTATATACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 0.00 3.36
1983 2006 7.715266 AATAACTATATACTCCCTCCGTTCC 57.285 40.000 0.00 0.00 0.00 3.62
1984 2007 9.420551 CAAAATAACTATATACTCCCTCCGTTC 57.579 37.037 0.00 0.00 0.00 3.95
1985 2008 9.151177 TCAAAATAACTATATACTCCCTCCGTT 57.849 33.333 0.00 0.00 0.00 4.44
1986 2009 8.716674 TCAAAATAACTATATACTCCCTCCGT 57.283 34.615 0.00 0.00 0.00 4.69
2021 2044 1.404315 GGTCCACCGAATCACTCTCAC 60.404 57.143 0.00 0.00 0.00 3.51
2323 2356 7.776107 TCCAAGTTCAAACACATTCATTTACA 58.224 30.769 0.00 0.00 0.00 2.41
2375 2408 2.700773 GCACCCCTTCACCGCATTC 61.701 63.158 0.00 0.00 0.00 2.67
2419 2452 3.818787 CGCCCAACATGCTCTGCC 61.819 66.667 0.00 0.00 0.00 4.85
2559 2592 2.435422 TCACGTTACCACCTCGACATA 58.565 47.619 0.00 0.00 0.00 2.29
2630 2664 7.553034 CACGATCTAATACCAATAAACACGTC 58.447 38.462 0.00 0.00 0.00 4.34
2669 2704 1.333115 GTTGGCGTTTATTTGTCCGC 58.667 50.000 0.00 0.00 45.05 5.54
2910 2945 7.220740 GGAAATAATCCCCAAACTTGTGAAAA 58.779 34.615 0.00 0.00 43.00 2.29
2913 2948 5.993748 GGAAATAATCCCCAAACTTGTGA 57.006 39.130 0.00 0.00 43.00 3.58
3114 3149 2.649816 GCCCAACCTATCCCCAGATAAT 59.350 50.000 0.00 0.00 34.53 1.28
3708 3745 5.415701 TCCTCTTATCATGTTTTGTTGGAGC 59.584 40.000 0.00 0.00 0.00 4.70
3712 3749 8.272545 TCTCATCCTCTTATCATGTTTTGTTG 57.727 34.615 0.00 0.00 0.00 3.33
3786 3823 0.549950 ATGGTGCTCATGAAGGGAGG 59.450 55.000 0.00 0.00 34.22 4.30
3936 3974 7.689299 TCTTTCCAGTCTTCCAGATTTTATCA 58.311 34.615 0.00 0.00 0.00 2.15
4045 4083 4.619973 TGCCTTGTTACAAAAAGCATGAG 58.380 39.130 11.40 0.00 0.00 2.90
4322 4360 5.229260 CGAGAAAACAGGCTGTAACAAAAAC 59.771 40.000 22.37 7.15 0.00 2.43
4401 4439 7.091533 ACCCCCTCTGTAATCAAATATAAGG 57.908 40.000 0.00 0.00 0.00 2.69
4452 4490 4.846779 AAGTATGCACAAACGGTTCAAT 57.153 36.364 0.00 0.00 0.00 2.57
4462 4501 9.461312 AACCTAATAAGATCAAAGTATGCACAA 57.539 29.630 0.00 0.00 0.00 3.33
4578 4621 4.799564 TGGGCATATTCAAAACTTCACC 57.200 40.909 0.00 0.00 0.00 4.02
4597 4640 1.269448 CAAGGGGACGTGTTCAATTGG 59.731 52.381 5.42 0.00 34.90 3.16
4677 4728 2.029844 GCTCCGCCACTGAAGTCAC 61.030 63.158 0.00 0.00 0.00 3.67
4825 4876 0.457853 TCGACTGCGCGCTTTCTATT 60.458 50.000 33.29 5.11 37.46 1.73
4865 4916 9.592196 ACGGAGGGAGTAGTTGTTTATATATTA 57.408 33.333 0.00 0.00 0.00 0.98
4904 4955 1.408422 AAGCGCGTTTTTGAATGCTC 58.592 45.000 8.43 0.00 32.70 4.26
4908 4959 6.861055 CCCATAATATAAGCGCGTTTTTGAAT 59.139 34.615 14.84 3.59 0.00 2.57
4920 4990 3.773119 TCCCTCCGTCCCATAATATAAGC 59.227 47.826 0.00 0.00 0.00 3.09
4932 5002 3.896272 ACATCTAAATACTCCCTCCGTCC 59.104 47.826 0.00 0.00 0.00 4.79
5028 5098 7.763172 TGGCTGTTAACTTTTTGTTTGTATG 57.237 32.000 7.22 0.00 39.89 2.39
5061 5131 0.314935 AATTTGCACAGCCTCCAACG 59.685 50.000 0.00 0.00 0.00 4.10
5062 5132 2.036346 AGAAATTTGCACAGCCTCCAAC 59.964 45.455 0.00 0.00 0.00 3.77
5063 5133 2.318908 AGAAATTTGCACAGCCTCCAA 58.681 42.857 0.00 0.00 0.00 3.53
5087 5160 7.953005 TTATCTGCTTGGAAATGGATTACAA 57.047 32.000 0.00 0.00 39.61 2.41
5184 5259 3.558931 ATCCGATGCCACTCACATTAA 57.441 42.857 0.00 0.00 0.00 1.40
5201 5276 9.950496 ATAATCCAACTGTGTAGATGAATATCC 57.050 33.333 0.00 0.00 33.64 2.59
5210 5285 7.931015 AGGGAATATAATCCAACTGTGTAGA 57.069 36.000 9.09 0.00 41.55 2.59
5233 5308 6.344500 GCATGACCAGGAATATAGGTGATAG 58.656 44.000 0.00 0.00 35.36 2.08
5288 5466 4.953940 AACACATGCAAAGTACCCAAAT 57.046 36.364 0.00 0.00 0.00 2.32
5387 5565 4.642429 AGTCTTCCAAAGGTGTGTGATAC 58.358 43.478 0.00 0.00 0.00 2.24
5437 5615 8.257306 GGAATAAATACCATCTCTCCATCTCTC 58.743 40.741 0.00 0.00 0.00 3.20
5438 5616 7.960861 AGGAATAAATACCATCTCTCCATCTCT 59.039 37.037 0.00 0.00 0.00 3.10
5439 5617 8.040132 CAGGAATAAATACCATCTCTCCATCTC 58.960 40.741 0.00 0.00 0.00 2.75
5440 5618 7.515514 ACAGGAATAAATACCATCTCTCCATCT 59.484 37.037 0.00 0.00 0.00 2.90
5441 5619 7.605691 CACAGGAATAAATACCATCTCTCCATC 59.394 40.741 0.00 0.00 0.00 3.51
5442 5620 7.072961 ACACAGGAATAAATACCATCTCTCCAT 59.927 37.037 0.00 0.00 0.00 3.41
5443 5621 6.386927 ACACAGGAATAAATACCATCTCTCCA 59.613 38.462 0.00 0.00 0.00 3.86
5444 5622 6.831976 ACACAGGAATAAATACCATCTCTCC 58.168 40.000 0.00 0.00 0.00 3.71
5748 5953 4.864247 GGAAATTTTGCAATGCATCGTAGT 59.136 37.500 9.39 0.00 38.76 2.73
5751 5956 3.432933 GTGGAAATTTTGCAATGCATCGT 59.567 39.130 9.39 0.00 38.76 3.73
5752 5957 3.181518 GGTGGAAATTTTGCAATGCATCG 60.182 43.478 9.39 0.00 38.76 3.84
5790 6191 1.262950 CAGTTTTCACGCACATCGGAA 59.737 47.619 0.00 0.00 43.86 4.30
5873 6276 5.706916 CATAATGCATAGCACCAAGGAATC 58.293 41.667 0.00 0.00 43.04 2.52
5901 6305 3.304057 GCACAAGGTAAAGAAGAGCACAC 60.304 47.826 0.00 0.00 0.00 3.82
5973 6381 2.506472 GAGGGGCCGATGTCTTCC 59.494 66.667 0.00 0.00 0.00 3.46
6037 6447 8.776470 GTGAGTGTACACTAGAGATCTTATACC 58.224 40.741 27.98 11.00 42.66 2.73
6074 6484 8.697507 AAGGAATATTTGGTTAGATAAGCCTG 57.302 34.615 0.00 0.00 33.00 4.85
6092 6502 6.015519 CACCATGGACAACAAGAAAAGGAATA 60.016 38.462 21.47 0.00 0.00 1.75
6158 6568 0.461870 TGACATTTCCGGGCTCATCG 60.462 55.000 0.00 0.00 0.00 3.84
6414 6824 5.048846 AGAAAGCTGGGAGACAAAAGTTA 57.951 39.130 0.00 0.00 0.00 2.24
6467 6878 5.220453 CGGAAAATGCAACAAGCCAAATATC 60.220 40.000 0.00 0.00 44.83 1.63
6468 6879 4.630940 CGGAAAATGCAACAAGCCAAATAT 59.369 37.500 0.00 0.00 44.83 1.28
6469 6880 3.993081 CGGAAAATGCAACAAGCCAAATA 59.007 39.130 0.00 0.00 44.83 1.40
6470 6881 2.807392 CGGAAAATGCAACAAGCCAAAT 59.193 40.909 0.00 0.00 44.83 2.32
6471 6882 2.208431 CGGAAAATGCAACAAGCCAAA 58.792 42.857 0.00 0.00 44.83 3.28
6474 6885 1.418373 GACGGAAAATGCAACAAGCC 58.582 50.000 0.00 0.00 44.83 4.35
6476 6887 1.001815 ACGGACGGAAAATGCAACAAG 60.002 47.619 0.00 0.00 0.00 3.16
6477 6888 1.025812 ACGGACGGAAAATGCAACAA 58.974 45.000 0.00 0.00 0.00 2.83
6512 6923 6.149474 GTGAGCTAGAGAAAAACATTGCCTTA 59.851 38.462 0.00 0.00 0.00 2.69
6810 7226 0.386113 ATCGCCGTCTTCTCCTTAGC 59.614 55.000 0.00 0.00 0.00 3.09
6817 7233 1.813786 GCTATCCTATCGCCGTCTTCT 59.186 52.381 0.00 0.00 0.00 2.85
6862 7974 2.031157 CCGCTTTTTGACGATGTTTCCT 60.031 45.455 0.00 0.00 0.00 3.36
6886 8041 4.018960 AGGTCAGTGATATGAAAAGCTGGT 60.019 41.667 0.00 0.00 0.00 4.00
6930 8085 0.033601 TCTCTCTGAGGACTCTGGGC 60.034 60.000 4.59 0.00 0.00 5.36
6997 8152 2.143008 AACGGCGGGTTGAATTTTTC 57.857 45.000 13.24 0.00 37.50 2.29
7006 8161 3.906879 GTTTGGCAACGGCGGGTT 61.907 61.111 13.24 0.00 42.47 4.11
7089 8649 6.948886 GGTAGATAGAGAGAGAGAGAGAGAGA 59.051 46.154 0.00 0.00 0.00 3.10
7096 8656 6.495181 ACAGAGAGGTAGATAGAGAGAGAGAG 59.505 46.154 0.00 0.00 0.00 3.20
7098 8658 6.495181 AGACAGAGAGGTAGATAGAGAGAGAG 59.505 46.154 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.