Multiple sequence alignment - TraesCS6A01G184000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G184000 chr6A 100.000 5651 0 0 1 5651 214564134 214558484 0.000000e+00 10436
1 TraesCS6A01G184000 chr6A 97.590 166 4 0 5486 5651 214481927 214481762 9.270000e-73 285
2 TraesCS6A01G184000 chr6D 94.981 3985 177 7 744 4718 157590266 157594237 0.000000e+00 6229
3 TraesCS6A01G184000 chr6D 95.415 698 22 8 1 692 157588784 157589477 0.000000e+00 1103
4 TraesCS6A01G184000 chr6D 97.436 156 4 0 5330 5485 157594603 157594758 3.360000e-67 267
5 TraesCS6A01G184000 chr6D 91.192 193 17 0 4801 4993 157594241 157594433 4.340000e-66 263
6 TraesCS6A01G184000 chr6D 93.151 73 2 1 681 750 157590158 157590230 2.780000e-18 104
7 TraesCS6A01G184000 chr6B 94.944 3323 145 11 880 4193 281232958 281236266 0.000000e+00 5184
8 TraesCS6A01G184000 chr6B 97.736 530 7 4 4191 4720 281236379 281236903 0.000000e+00 907
9 TraesCS6A01G184000 chr6B 94.891 411 15 5 1 409 281231706 281232112 6.170000e-179 638
10 TraesCS6A01G184000 chr6B 94.853 272 11 3 479 750 281232120 281232388 6.770000e-114 422
11 TraesCS6A01G184000 chr6B 88.841 233 22 3 4807 5037 281236911 281237141 3.330000e-72 283
12 TraesCS6A01G184000 chr4A 99.291 141 0 1 5190 5330 710829904 710830043 2.610000e-63 254
13 TraesCS6A01G184000 chr5A 97.931 145 2 1 5190 5334 638604068 638603925 3.380000e-62 250
14 TraesCS6A01G184000 chr4B 92.414 145 9 2 5190 5333 193713060 193713203 7.420000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G184000 chr6A 214558484 214564134 5650 True 10436.0 10436 100.000 1 5651 1 chr6A.!!$R2 5650
1 TraesCS6A01G184000 chr6D 157588784 157594758 5974 False 1593.2 6229 94.435 1 5485 5 chr6D.!!$F1 5484
2 TraesCS6A01G184000 chr6B 281231706 281237141 5435 False 1486.8 5184 94.253 1 5037 5 chr6B.!!$F1 5036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 672 0.032678 CTCGCCGGAGATTAGCATGT 59.967 55.0 8.83 0.0 43.27 3.21 F
1596 2754 0.395586 TGCTCCACACCAACAAGCTT 60.396 50.0 0.00 0.0 34.11 3.74 F
2931 4089 0.178975 ACAATCTTTCCGGCCCAACA 60.179 50.0 0.00 0.0 0.00 3.33 F
3746 4904 0.379669 GATGCGGAATGTGAGGCTTG 59.620 55.0 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2233 3391 0.250124 CCGGTGAGGTTGTTGTGCTA 60.250 55.0 0.0 0.0 34.51 3.49 R
3143 4301 0.098200 TAGTGACAGCGGAATCGTCG 59.902 55.0 0.0 0.0 38.89 5.12 R
4047 5205 0.173255 GCCCAAAATCACCGACATGG 59.827 55.0 0.0 0.0 46.41 3.66 R
5629 6922 0.032130 GCAGTCGTGTGTGAGGAGAA 59.968 55.0 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.896801 CGCTAATGCCATGGCCGTC 61.897 63.158 33.44 16.33 41.09 4.79
283 284 3.058224 GCAGAATTTTCTTGGCTACGTGT 60.058 43.478 0.00 0.00 34.74 4.49
346 349 3.181454 CGGTAGGTTCCTGATATTTGGCT 60.181 47.826 1.12 0.00 0.00 4.75
381 384 1.567649 TCCGTACCCTGGAGTAGTCAT 59.432 52.381 0.00 0.00 0.00 3.06
413 416 5.305644 TGTTTTTCTCTAGCTCACCTTCTCT 59.694 40.000 0.00 0.00 0.00 3.10
414 417 6.183361 TGTTTTTCTCTAGCTCACCTTCTCTT 60.183 38.462 0.00 0.00 0.00 2.85
522 528 3.281341 TGCTTGCACGAACCAAAATAG 57.719 42.857 0.00 0.00 0.00 1.73
523 529 1.985684 GCTTGCACGAACCAAAATAGC 59.014 47.619 0.00 0.00 0.00 2.97
556 563 5.505286 GCTACATAAATAGCTGCTGTTGTG 58.495 41.667 13.43 15.89 43.62 3.33
558 565 5.300969 ACATAAATAGCTGCTGTTGTGTG 57.699 39.130 21.09 17.16 0.00 3.82
570 577 1.864711 TGTTGTGTGTTAGCTCTTCGC 59.135 47.619 0.00 0.00 39.57 4.70
571 578 1.194772 GTTGTGTGTTAGCTCTTCGCC 59.805 52.381 0.00 0.00 40.39 5.54
572 579 0.320421 TGTGTGTTAGCTCTTCGCCC 60.320 55.000 0.00 0.00 40.39 6.13
664 672 0.032678 CTCGCCGGAGATTAGCATGT 59.967 55.000 8.83 0.00 43.27 3.21
679 687 1.587350 ATGTCACGATGAGCGAGCG 60.587 57.895 0.00 0.00 44.57 5.03
731 1435 1.150536 GGGCAGGGTCAGTGTGAAA 59.849 57.895 0.00 0.00 0.00 2.69
755 1502 1.169661 ACATCGTCAAAAAGCGGCCA 61.170 50.000 2.24 0.00 0.00 5.36
799 1546 2.101415 TCGACTACTCATGGCTCATTGG 59.899 50.000 0.00 0.00 0.00 3.16
850 1597 3.993234 GATCGCATCACGCTGCCG 61.993 66.667 0.00 0.00 43.23 5.69
875 1622 1.549037 CCCCCGTCCCAGAAAAATTCA 60.549 52.381 0.00 0.00 0.00 2.57
878 1625 2.029380 CCCGTCCCAGAAAAATTCAACC 60.029 50.000 0.00 0.00 0.00 3.77
958 2110 1.559682 ACACTCACCCGAGCCAAATAT 59.440 47.619 0.00 0.00 43.66 1.28
965 2117 2.630580 ACCCGAGCCAAATATCTCTCTC 59.369 50.000 0.00 0.00 0.00 3.20
967 2119 3.056891 CCCGAGCCAAATATCTCTCTCTC 60.057 52.174 0.00 0.00 0.00 3.20
1036 2188 1.072173 CCAGTCCACACTCCACAATCA 59.928 52.381 0.00 0.00 0.00 2.57
1100 2252 2.036256 AATGGCAGCACTGTCCCC 59.964 61.111 0.00 0.00 33.48 4.81
1514 2672 2.046892 CCACCTCAACCTCAGCGG 60.047 66.667 0.00 0.00 39.35 5.52
1596 2754 0.395586 TGCTCCACACCAACAAGCTT 60.396 50.000 0.00 0.00 34.11 3.74
1623 2781 4.473520 ATCCCGCCGGAGCTGTTG 62.474 66.667 5.05 0.00 43.12 3.33
1749 2907 2.158813 GGAGTTCAACAACCTGACAGGA 60.159 50.000 28.56 0.77 37.67 3.86
1752 2910 3.134458 GTTCAACAACCTGACAGGAGAG 58.866 50.000 28.56 17.74 37.67 3.20
1830 2988 2.503061 CTGTCAGGCTCCATCCCG 59.497 66.667 0.00 0.00 0.00 5.14
1890 3048 1.289066 CTTCTCGAACCGGCTGTCA 59.711 57.895 0.00 0.00 0.00 3.58
2160 3318 0.460987 CCCTCGCTGAGCTTTACCTG 60.461 60.000 1.78 0.00 0.00 4.00
2176 3334 3.059352 ACCTGGACAACAATGAGCTAC 57.941 47.619 0.00 0.00 0.00 3.58
2197 3355 3.318191 GCCCTCTGCCACTCTCAT 58.682 61.111 0.00 0.00 0.00 2.90
2224 3382 3.756082 ACCTCTCCTCTCTTGAGATGT 57.244 47.619 0.41 0.00 42.73 3.06
2230 3388 4.082517 TCTCCTCTCTTGAGATGTTCAACG 60.083 45.833 0.41 0.00 40.82 4.10
2233 3391 4.321601 CCTCTCTTGAGATGTTCAACGTCT 60.322 45.833 12.33 12.33 46.43 4.18
2355 3513 2.629656 GCCGTCCTTGTGCAATGCT 61.630 57.895 6.82 0.00 0.00 3.79
2364 3522 1.836802 TGTGCAATGCTTCCATGCTA 58.163 45.000 6.82 0.00 0.00 3.49
2502 3660 0.337428 ATGCTGAATGGGGCTTCCTT 59.663 50.000 0.00 0.00 36.20 3.36
2565 3723 3.018423 AGTGAAAACAAGCTCCAAGGT 57.982 42.857 0.00 0.00 0.00 3.50
2655 3813 1.405526 GCAGGGACGATAACTGAAGCA 60.406 52.381 0.00 0.00 34.21 3.91
2674 3832 5.184892 AGCAATAGGGAACTTCATCAACT 57.815 39.130 0.00 0.00 43.67 3.16
2757 3915 6.348213 GCAAGCTTAAGAAGTTGAATCGGTTA 60.348 38.462 6.67 0.00 0.00 2.85
2787 3945 6.998074 TGTCAAATAACAACTTGTCAGGATCT 59.002 34.615 0.00 0.00 0.00 2.75
2837 3995 4.367039 AGCTTACAACCCTTCTGCTTAA 57.633 40.909 0.00 0.00 0.00 1.85
2893 4051 3.259374 TCTCAGCAACTGTCCTTTAGAGG 59.741 47.826 0.00 0.00 45.02 3.69
2931 4089 0.178975 ACAATCTTTCCGGCCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
2940 4098 1.377229 CGGCCCAACACCTAAGGAA 59.623 57.895 0.00 0.00 0.00 3.36
2943 4101 1.613520 GGCCCAACACCTAAGGAACTC 60.614 57.143 0.00 0.00 38.49 3.01
2968 4126 3.583806 CTCATCTCAAGCTTGTCGAGTT 58.416 45.455 25.19 8.62 0.00 3.01
3181 4339 2.183555 GACAGTTACGGGGCCTCG 59.816 66.667 27.07 27.07 0.00 4.63
3237 4395 1.092345 GCATTCCTGAGTTCCTCGGC 61.092 60.000 0.00 0.00 35.69 5.54
3249 4407 2.409870 CCTCGGCACCATGAAAGGC 61.410 63.158 0.00 0.00 0.00 4.35
3261 4419 4.016444 CCATGAAAGGCCTTGCTAGTTTA 58.984 43.478 24.48 2.96 0.00 2.01
3322 4480 4.384056 AGACGGAATATTCCTCAATGCAG 58.616 43.478 27.86 14.56 45.33 4.41
3483 4641 4.377021 TGGTCATACTATCCGCAATGTTC 58.623 43.478 0.00 0.00 0.00 3.18
3509 4667 7.962918 CGTGTTATGTAAAAGAAGCAAGCTTAT 59.037 33.333 7.37 1.04 36.26 1.73
3536 4694 3.620966 GCAAAGCCACAGATAACTCTCCT 60.621 47.826 0.00 0.00 0.00 3.69
3575 4733 8.814038 ATAAGAGTTTCTTATGCTGAATTGGT 57.186 30.769 9.83 0.00 45.21 3.67
3603 4761 3.417069 ACAGATGGTTTCACATCCGAA 57.583 42.857 2.81 0.00 46.56 4.30
3612 4770 4.022329 GGTTTCACATCCGAAAACCTCATT 60.022 41.667 8.59 0.00 36.73 2.57
3618 4776 0.887933 CCGAAAACCTCATTGGGGTG 59.112 55.000 9.52 0.00 41.11 4.61
3673 4831 2.957402 AATCTCTGGCCAACAAGTGA 57.043 45.000 7.01 1.45 0.00 3.41
3746 4904 0.379669 GATGCGGAATGTGAGGCTTG 59.620 55.000 0.00 0.00 0.00 4.01
3756 4914 3.827008 TGTGAGGCTTGGAGATGTATC 57.173 47.619 0.00 0.00 0.00 2.24
3762 4920 1.271054 GCTTGGAGATGTATCCGCCAT 60.271 52.381 5.30 0.00 42.77 4.40
3895 5053 3.701542 ACACAAGCATCTCGAGGAAGATA 59.298 43.478 13.56 0.00 34.21 1.98
3922 5080 5.226194 ACCCAAGATGCTAGATCTCATTC 57.774 43.478 0.00 0.00 0.00 2.67
3924 5082 5.221682 ACCCAAGATGCTAGATCTCATTCAG 60.222 44.000 0.00 0.00 0.00 3.02
3942 5100 2.169978 TCAGAGACTCCAGATTGCCATG 59.830 50.000 0.00 0.00 0.00 3.66
3969 5127 2.476854 GGCTTCTGCGCTTGACTATTTG 60.477 50.000 9.73 0.00 40.82 2.32
4002 5160 2.223711 GCCGTTTCCAATTGTTCACTGT 60.224 45.455 4.43 0.00 0.00 3.55
4088 5246 1.621317 TGCAAGGTTCCTACATGACGA 59.379 47.619 0.00 0.00 0.00 4.20
4125 5283 4.001652 CAGAGACACCAACTAGTAGTCGA 58.998 47.826 2.58 0.00 34.56 4.20
4224 5497 9.168353 GTTGCATTTGATTTTTCACATTTTACC 57.832 29.630 0.00 0.00 0.00 2.85
4246 5519 3.539604 CTCCATCCAAGGAAGCACTTAG 58.460 50.000 0.00 0.00 37.20 2.18
4248 5521 4.101114 TCCATCCAAGGAAGCACTTAGTA 58.899 43.478 0.00 0.00 33.93 1.82
4249 5522 4.721776 TCCATCCAAGGAAGCACTTAGTAT 59.278 41.667 0.00 0.00 33.93 2.12
4250 5523 5.059833 CCATCCAAGGAAGCACTTAGTATC 58.940 45.833 0.00 0.00 0.00 2.24
4317 5590 3.021695 AGCTTCAATCCATGGTGATGTG 58.978 45.455 12.58 4.26 0.00 3.21
4446 5719 0.108138 ACCAAGCGGCTACTGTCATC 60.108 55.000 1.35 0.00 34.57 2.92
4727 6000 3.129813 TGAGGATCATGCATGTTTTCTGC 59.870 43.478 25.43 15.48 42.56 4.26
4728 6001 3.362706 AGGATCATGCATGTTTTCTGCT 58.637 40.909 25.43 13.50 40.34 4.24
4729 6002 3.767673 AGGATCATGCATGTTTTCTGCTT 59.232 39.130 25.43 0.00 40.34 3.91
4730 6003 4.222145 AGGATCATGCATGTTTTCTGCTTT 59.778 37.500 25.43 0.44 40.34 3.51
4731 6004 5.419788 AGGATCATGCATGTTTTCTGCTTTA 59.580 36.000 25.43 2.66 40.34 1.85
4732 6005 6.071221 AGGATCATGCATGTTTTCTGCTTTAA 60.071 34.615 25.43 2.45 40.34 1.52
4733 6006 6.255020 GGATCATGCATGTTTTCTGCTTTAAG 59.745 38.462 25.43 0.00 40.34 1.85
4734 6007 4.925054 TCATGCATGTTTTCTGCTTTAAGC 59.075 37.500 25.43 10.38 42.82 3.09
4751 6024 8.177980 GCTTTAAGCAATGGTTTTAGAATCTG 57.822 34.615 12.54 0.00 41.89 2.90
4752 6025 8.028938 GCTTTAAGCAATGGTTTTAGAATCTGA 58.971 33.333 12.54 0.00 41.89 3.27
4756 6029 6.789262 AGCAATGGTTTTAGAATCTGATTCG 58.211 36.000 21.15 7.29 43.92 3.34
4757 6030 6.599244 AGCAATGGTTTTAGAATCTGATTCGA 59.401 34.615 21.15 15.30 43.92 3.71
4758 6031 7.284034 AGCAATGGTTTTAGAATCTGATTCGAT 59.716 33.333 21.15 10.23 43.92 3.59
4759 6032 8.559536 GCAATGGTTTTAGAATCTGATTCGATA 58.440 33.333 21.15 11.07 43.92 2.92
4823 6096 7.634809 AAAGCTAGTCGTTTTAACTCTGTAC 57.365 36.000 0.00 0.00 0.00 2.90
4829 6102 9.540431 CTAGTCGTTTTAACTCTGTACTAAGAC 57.460 37.037 0.00 0.00 0.00 3.01
4922 6195 8.749354 AGTGTTGACAGGAAAGTAAAGAAATTT 58.251 29.630 0.00 0.00 0.00 1.82
4964 6239 8.015658 AGAAACTTAACTTACAATTAAGCAGCG 58.984 33.333 4.76 0.00 41.43 5.18
4985 6260 1.821759 CACTTGGGTGCGGTGTCAA 60.822 57.895 0.00 0.00 36.61 3.18
5005 6280 9.907875 GTGTCAATCTCACTGTCTCAGGATGAG 62.908 48.148 0.18 0.18 46.34 2.90
5016 6291 1.008815 TCAGGATGAGGTGGATCTGGT 59.991 52.381 0.00 0.00 42.56 4.00
5079 6372 8.980596 AGAATATTGTTGCAGATTTTATCCCAA 58.019 29.630 0.00 0.00 0.00 4.12
5081 6374 4.799564 TGTTGCAGATTTTATCCCAACC 57.200 40.909 13.53 3.25 39.38 3.77
5089 6382 6.071616 GCAGATTTTATCCCAACCAGTACAAA 60.072 38.462 0.00 0.00 0.00 2.83
5090 6383 7.363793 GCAGATTTTATCCCAACCAGTACAAAT 60.364 37.037 0.00 0.00 0.00 2.32
5091 6384 9.184523 CAGATTTTATCCCAACCAGTACAAATA 57.815 33.333 0.00 0.00 0.00 1.40
5092 6385 9.185680 AGATTTTATCCCAACCAGTACAAATAC 57.814 33.333 0.00 0.00 0.00 1.89
5093 6386 7.706100 TTTTATCCCAACCAGTACAAATACC 57.294 36.000 0.00 0.00 30.88 2.73
5094 6387 3.337694 TCCCAACCAGTACAAATACCG 57.662 47.619 0.00 0.00 30.88 4.02
5095 6388 2.638855 TCCCAACCAGTACAAATACCGT 59.361 45.455 0.00 0.00 30.88 4.83
5096 6389 3.072768 TCCCAACCAGTACAAATACCGTT 59.927 43.478 0.00 0.00 30.88 4.44
5097 6390 3.822167 CCCAACCAGTACAAATACCGTTT 59.178 43.478 0.00 0.00 30.88 3.60
5098 6391 4.278919 CCCAACCAGTACAAATACCGTTTT 59.721 41.667 0.00 0.00 30.88 2.43
5099 6392 5.472820 CCCAACCAGTACAAATACCGTTTTA 59.527 40.000 0.00 0.00 30.88 1.52
5100 6393 6.372981 CCAACCAGTACAAATACCGTTTTAC 58.627 40.000 0.00 0.00 30.88 2.01
5101 6394 6.017275 CCAACCAGTACAAATACCGTTTTACA 60.017 38.462 0.00 0.00 30.88 2.41
5102 6395 7.308710 CCAACCAGTACAAATACCGTTTTACAT 60.309 37.037 0.00 0.00 30.88 2.29
5103 6396 8.719648 CAACCAGTACAAATACCGTTTTACATA 58.280 33.333 0.00 0.00 30.88 2.29
5104 6397 9.452287 AACCAGTACAAATACCGTTTTACATAT 57.548 29.630 0.00 0.00 30.88 1.78
5105 6398 8.885722 ACCAGTACAAATACCGTTTTACATATG 58.114 33.333 0.00 0.00 30.88 1.78
5106 6399 9.100554 CCAGTACAAATACCGTTTTACATATGA 57.899 33.333 10.38 0.00 30.88 2.15
5108 6401 9.321562 AGTACAAATACCGTTTTACATATGAGG 57.678 33.333 10.38 5.32 30.88 3.86
5109 6402 9.316730 GTACAAATACCGTTTTACATATGAGGA 57.683 33.333 10.38 0.00 0.00 3.71
5110 6403 8.795842 ACAAATACCGTTTTACATATGAGGAA 57.204 30.769 10.38 0.00 0.00 3.36
5111 6404 9.403583 ACAAATACCGTTTTACATATGAGGAAT 57.596 29.630 10.38 0.00 0.00 3.01
5114 6407 8.752766 ATACCGTTTTACATATGAGGAATACG 57.247 34.615 10.38 14.97 0.00 3.06
5115 6408 5.464389 ACCGTTTTACATATGAGGAATACGC 59.536 40.000 10.38 0.00 0.00 4.42
5116 6409 5.464057 CCGTTTTACATATGAGGAATACGCA 59.536 40.000 10.38 0.00 0.00 5.24
5117 6410 6.147164 CCGTTTTACATATGAGGAATACGCAT 59.853 38.462 10.38 0.00 42.51 4.73
5118 6411 7.009440 CGTTTTACATATGAGGAATACGCATG 58.991 38.462 10.38 0.00 40.02 4.06
5119 6412 7.095816 CGTTTTACATATGAGGAATACGCATGA 60.096 37.037 10.38 0.00 40.02 3.07
5120 6413 8.556194 GTTTTACATATGAGGAATACGCATGAA 58.444 33.333 10.38 0.00 40.02 2.57
5121 6414 8.669946 TTTACATATGAGGAATACGCATGAAA 57.330 30.769 10.38 0.00 40.02 2.69
5122 6415 8.669946 TTACATATGAGGAATACGCATGAAAA 57.330 30.769 10.38 0.00 40.02 2.29
5123 6416 7.566760 ACATATGAGGAATACGCATGAAAAA 57.433 32.000 10.38 0.00 40.02 1.94
5154 6447 3.374058 GGCTTATCGCAAGCTGAAAGTAA 59.626 43.478 17.50 0.00 42.62 2.24
5174 6467 6.529220 AGTAAATGCCTCTAATGAAGCTAGG 58.471 40.000 0.00 0.00 31.28 3.02
5196 6489 3.779759 CTGACTAAGCAGTAAGAGCCTG 58.220 50.000 0.00 0.00 35.44 4.85
5197 6490 3.165875 TGACTAAGCAGTAAGAGCCTGT 58.834 45.455 0.00 0.00 34.21 4.00
5198 6491 3.578716 TGACTAAGCAGTAAGAGCCTGTT 59.421 43.478 0.00 0.00 34.21 3.16
5199 6492 4.177783 GACTAAGCAGTAAGAGCCTGTTC 58.822 47.826 0.00 0.00 34.21 3.18
5200 6493 2.086054 AAGCAGTAAGAGCCTGTTCG 57.914 50.000 0.00 0.00 32.41 3.95
5201 6494 0.247736 AGCAGTAAGAGCCTGTTCGG 59.752 55.000 0.00 0.00 32.41 4.30
5202 6495 0.246635 GCAGTAAGAGCCTGTTCGGA 59.753 55.000 0.00 0.00 33.16 4.55
5203 6496 1.737363 GCAGTAAGAGCCTGTTCGGAG 60.737 57.143 0.00 0.00 33.16 4.63
5204 6497 1.819288 CAGTAAGAGCCTGTTCGGAGA 59.181 52.381 0.00 0.00 33.16 3.71
5205 6498 1.819903 AGTAAGAGCCTGTTCGGAGAC 59.180 52.381 0.00 0.00 34.32 3.36
5217 6510 4.500116 GGAGACGCTCCGCTCCAC 62.500 72.222 17.13 0.00 43.80 4.02
5218 6511 4.838486 GAGACGCTCCGCTCCACG 62.838 72.222 0.00 0.00 43.15 4.94
5228 6521 2.435059 GCTCCACGAGGCCACTTC 60.435 66.667 5.01 0.00 33.74 3.01
5229 6522 2.266055 CTCCACGAGGCCACTTCC 59.734 66.667 5.01 0.00 33.74 3.46
5230 6523 3.316573 CTCCACGAGGCCACTTCCC 62.317 68.421 5.01 0.00 33.74 3.97
5231 6524 4.760047 CCACGAGGCCACTTCCCG 62.760 72.222 5.01 0.52 0.00 5.14
5232 6525 4.760047 CACGAGGCCACTTCCCGG 62.760 72.222 5.01 0.00 0.00 5.73
5234 6527 4.148825 CGAGGCCACTTCCCGGAG 62.149 72.222 5.01 0.00 0.00 4.63
5235 6528 4.475135 GAGGCCACTTCCCGGAGC 62.475 72.222 5.01 0.00 0.00 4.70
5259 6552 3.658351 CGGAGCTCCAGTTAAAATTCG 57.342 47.619 31.67 9.73 35.14 3.34
5260 6553 2.223044 CGGAGCTCCAGTTAAAATTCGC 60.223 50.000 31.67 0.07 35.14 4.70
5261 6554 2.223044 GGAGCTCCAGTTAAAATTCGCG 60.223 50.000 28.43 0.00 35.64 5.87
5262 6555 1.737793 AGCTCCAGTTAAAATTCGCGG 59.262 47.619 6.13 0.00 0.00 6.46
5263 6556 1.735571 GCTCCAGTTAAAATTCGCGGA 59.264 47.619 6.13 0.00 0.00 5.54
5264 6557 2.223044 GCTCCAGTTAAAATTCGCGGAG 60.223 50.000 6.13 0.81 41.24 4.63
5283 6576 4.284550 GGGCAAGTGGGTGCTCCA 62.285 66.667 7.20 0.85 44.31 3.86
5291 6584 1.685224 TGGGTGCTCCACAGATTCC 59.315 57.895 7.20 0.00 41.46 3.01
5292 6585 1.450312 GGGTGCTCCACAGATTCCG 60.450 63.158 7.20 0.00 35.86 4.30
5293 6586 1.596934 GGTGCTCCACAGATTCCGA 59.403 57.895 0.00 0.00 35.86 4.55
5294 6587 0.036388 GGTGCTCCACAGATTCCGAA 60.036 55.000 0.00 0.00 35.86 4.30
5295 6588 1.610624 GGTGCTCCACAGATTCCGAAA 60.611 52.381 0.00 0.00 35.86 3.46
5296 6589 2.359900 GTGCTCCACAGATTCCGAAAT 58.640 47.619 0.00 0.00 34.08 2.17
5297 6590 2.749621 GTGCTCCACAGATTCCGAAATT 59.250 45.455 0.00 0.00 34.08 1.82
5298 6591 3.191371 GTGCTCCACAGATTCCGAAATTT 59.809 43.478 0.00 0.00 34.08 1.82
5299 6592 3.440173 TGCTCCACAGATTCCGAAATTTC 59.560 43.478 8.20 8.20 0.00 2.17
5300 6593 3.440173 GCTCCACAGATTCCGAAATTTCA 59.560 43.478 17.99 0.00 0.00 2.69
5301 6594 4.437930 GCTCCACAGATTCCGAAATTTCAG 60.438 45.833 17.99 7.03 0.00 3.02
5302 6595 4.009675 TCCACAGATTCCGAAATTTCAGG 58.990 43.478 17.99 17.80 0.00 3.86
5303 6596 4.009675 CCACAGATTCCGAAATTTCAGGA 58.990 43.478 20.62 20.62 0.00 3.86
5304 6597 4.458989 CCACAGATTCCGAAATTTCAGGAA 59.541 41.667 29.53 29.53 40.94 3.36
5305 6598 5.392380 CCACAGATTCCGAAATTTCAGGAAG 60.392 44.000 30.14 23.81 40.45 3.46
5306 6599 4.156739 ACAGATTCCGAAATTTCAGGAAGC 59.843 41.667 30.81 30.81 41.73 3.86
5307 6600 4.156556 CAGATTCCGAAATTTCAGGAAGCA 59.843 41.667 34.54 21.81 42.74 3.91
5308 6601 4.397417 AGATTCCGAAATTTCAGGAAGCAG 59.603 41.667 34.54 15.73 42.74 4.24
5309 6602 2.436417 TCCGAAATTTCAGGAAGCAGG 58.564 47.619 21.61 11.80 30.74 4.85
5310 6603 2.162681 CCGAAATTTCAGGAAGCAGGT 58.837 47.619 17.99 0.00 0.00 4.00
5311 6604 2.095059 CCGAAATTTCAGGAAGCAGGTG 60.095 50.000 17.99 0.00 0.00 4.00
5312 6605 2.095059 CGAAATTTCAGGAAGCAGGTGG 60.095 50.000 17.99 0.00 0.00 4.61
5313 6606 2.978156 AATTTCAGGAAGCAGGTGGA 57.022 45.000 0.00 0.00 0.00 4.02
5314 6607 2.206576 ATTTCAGGAAGCAGGTGGAC 57.793 50.000 0.00 0.00 0.00 4.02
5315 6608 0.843309 TTTCAGGAAGCAGGTGGACA 59.157 50.000 0.00 0.00 0.00 4.02
5316 6609 1.067295 TTCAGGAAGCAGGTGGACAT 58.933 50.000 0.00 0.00 0.00 3.06
5317 6610 0.615331 TCAGGAAGCAGGTGGACATC 59.385 55.000 0.00 0.00 0.00 3.06
5318 6611 0.393537 CAGGAAGCAGGTGGACATCC 60.394 60.000 0.00 0.00 0.00 3.51
5319 6612 0.842030 AGGAAGCAGGTGGACATCCA 60.842 55.000 0.00 0.00 45.30 3.41
5353 6646 6.594788 AAGTCTAACCATACTTTCCACGTA 57.405 37.500 0.00 0.00 32.00 3.57
5385 6678 4.509600 CGTTGAAGAAGAAGATATCCTGGC 59.490 45.833 0.00 0.00 0.00 4.85
5462 6755 3.386237 ACCTCCGTCAGCTCAGCC 61.386 66.667 0.00 0.00 0.00 4.85
5487 6780 2.355956 GCCCGTAGCGGTAGATGC 60.356 66.667 6.82 0.00 46.80 3.91
5488 6781 2.857744 GCCCGTAGCGGTAGATGCT 61.858 63.158 6.82 0.00 46.80 3.79
5489 6782 1.521450 GCCCGTAGCGGTAGATGCTA 61.521 60.000 6.82 0.00 46.80 3.49
5494 6787 1.906990 TAGCGGTAGATGCTACCCTC 58.093 55.000 15.86 9.35 43.71 4.30
5495 6788 1.173444 AGCGGTAGATGCTACCCTCG 61.173 60.000 15.86 7.46 41.87 4.63
5496 6789 1.957562 CGGTAGATGCTACCCTCGG 59.042 63.158 15.86 1.07 34.15 4.63
5497 6790 1.524863 CGGTAGATGCTACCCTCGGG 61.525 65.000 15.86 0.00 42.03 5.14
5507 6800 3.951765 CCCTCGGGTAGAACTCCC 58.048 66.667 0.00 0.00 41.41 4.30
5508 6801 1.310373 CCCTCGGGTAGAACTCCCT 59.690 63.158 0.00 0.00 42.56 4.20
5509 6802 0.554792 CCCTCGGGTAGAACTCCCTA 59.445 60.000 0.00 0.00 42.56 3.53
5510 6803 1.479021 CCCTCGGGTAGAACTCCCTAG 60.479 61.905 0.00 0.00 42.56 3.02
5511 6804 1.320507 CTCGGGTAGAACTCCCTAGC 58.679 60.000 0.00 0.00 42.56 3.42
5516 6809 1.694696 GGTAGAACTCCCTAGCCATGG 59.305 57.143 7.63 7.63 32.58 3.66
5517 6810 1.070914 GTAGAACTCCCTAGCCATGGC 59.929 57.143 30.12 30.12 42.33 4.40
5518 6811 1.149401 GAACTCCCTAGCCATGGCC 59.851 63.158 33.14 15.39 43.17 5.36
5519 6812 2.666596 GAACTCCCTAGCCATGGCCG 62.667 65.000 33.14 23.23 43.17 6.13
5520 6813 3.946201 CTCCCTAGCCATGGCCGG 61.946 72.222 33.14 30.03 43.17 6.13
5524 6817 4.569180 CTAGCCATGGCCGGGGTG 62.569 72.222 33.14 12.81 43.17 4.61
5529 6822 4.358841 CATGGCCGGGGTGTGGAA 62.359 66.667 2.18 0.00 0.00 3.53
5530 6823 3.346734 ATGGCCGGGGTGTGGAAT 61.347 61.111 2.18 0.00 0.00 3.01
5531 6824 3.358932 ATGGCCGGGGTGTGGAATC 62.359 63.158 2.18 0.00 0.00 2.52
5533 6826 4.404098 GCCGGGGTGTGGAATCGT 62.404 66.667 2.18 0.00 0.00 3.73
5534 6827 2.125269 CCGGGGTGTGGAATCGTC 60.125 66.667 0.00 0.00 0.00 4.20
5535 6828 2.508439 CGGGGTGTGGAATCGTCG 60.508 66.667 0.00 0.00 0.00 5.12
5536 6829 2.975536 GGGGTGTGGAATCGTCGA 59.024 61.111 0.00 0.00 0.00 4.20
5537 6830 1.294138 GGGGTGTGGAATCGTCGAA 59.706 57.895 0.00 0.00 0.00 3.71
5538 6831 0.107848 GGGGTGTGGAATCGTCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
5539 6832 1.677820 GGGGTGTGGAATCGTCGAATT 60.678 52.381 0.00 0.00 0.00 2.17
5540 6833 1.664151 GGGTGTGGAATCGTCGAATTC 59.336 52.381 0.00 4.13 35.35 2.17
5541 6834 2.343101 GGTGTGGAATCGTCGAATTCA 58.657 47.619 11.04 0.00 37.38 2.57
5542 6835 2.348666 GGTGTGGAATCGTCGAATTCAG 59.651 50.000 11.04 0.00 37.38 3.02
5543 6836 3.250744 GTGTGGAATCGTCGAATTCAGA 58.749 45.455 11.04 2.11 37.38 3.27
5544 6837 3.304559 GTGTGGAATCGTCGAATTCAGAG 59.695 47.826 11.04 0.00 37.38 3.35
5545 6838 3.192633 TGTGGAATCGTCGAATTCAGAGA 59.807 43.478 11.04 1.37 37.38 3.10
5546 6839 4.174009 GTGGAATCGTCGAATTCAGAGAA 58.826 43.478 11.04 0.00 37.38 2.87
5547 6840 4.266502 GTGGAATCGTCGAATTCAGAGAAG 59.733 45.833 11.04 0.00 37.38 2.85
5548 6841 3.799420 GGAATCGTCGAATTCAGAGAAGG 59.201 47.826 11.04 0.00 37.38 3.46
5549 6842 4.440250 GGAATCGTCGAATTCAGAGAAGGA 60.440 45.833 11.04 0.00 37.38 3.36
5550 6843 3.766676 TCGTCGAATTCAGAGAAGGAG 57.233 47.619 6.22 0.00 0.00 3.69
5551 6844 3.344515 TCGTCGAATTCAGAGAAGGAGA 58.655 45.455 6.22 0.00 0.00 3.71
5552 6845 3.127203 TCGTCGAATTCAGAGAAGGAGAC 59.873 47.826 6.22 0.72 0.00 3.36
5553 6846 3.430931 GTCGAATTCAGAGAAGGAGACG 58.569 50.000 6.22 0.00 0.00 4.18
5554 6847 3.082548 TCGAATTCAGAGAAGGAGACGT 58.917 45.455 6.22 0.00 0.00 4.34
5555 6848 3.119814 TCGAATTCAGAGAAGGAGACGTG 60.120 47.826 6.22 0.00 0.00 4.49
5556 6849 3.516615 GAATTCAGAGAAGGAGACGTGG 58.483 50.000 0.00 0.00 0.00 4.94
5557 6850 2.287977 TTCAGAGAAGGAGACGTGGA 57.712 50.000 0.00 0.00 0.00 4.02
5558 6851 1.535833 TCAGAGAAGGAGACGTGGAC 58.464 55.000 0.00 0.00 0.00 4.02
5559 6852 1.202891 TCAGAGAAGGAGACGTGGACA 60.203 52.381 0.00 0.00 0.00 4.02
5560 6853 1.201181 CAGAGAAGGAGACGTGGACAG 59.799 57.143 0.00 0.00 0.00 3.51
5561 6854 0.528470 GAGAAGGAGACGTGGACAGG 59.472 60.000 0.00 0.00 0.00 4.00
5562 6855 0.112606 AGAAGGAGACGTGGACAGGA 59.887 55.000 0.00 0.00 0.00 3.86
5563 6856 0.966920 GAAGGAGACGTGGACAGGAA 59.033 55.000 0.00 0.00 0.00 3.36
5564 6857 0.969894 AAGGAGACGTGGACAGGAAG 59.030 55.000 0.00 0.00 0.00 3.46
5565 6858 0.900647 AGGAGACGTGGACAGGAAGG 60.901 60.000 0.00 0.00 0.00 3.46
5566 6859 0.898789 GGAGACGTGGACAGGAAGGA 60.899 60.000 0.00 0.00 0.00 3.36
5567 6860 0.966920 GAGACGTGGACAGGAAGGAA 59.033 55.000 0.00 0.00 0.00 3.36
5568 6861 0.969894 AGACGTGGACAGGAAGGAAG 59.030 55.000 0.00 0.00 0.00 3.46
5569 6862 0.966920 GACGTGGACAGGAAGGAAGA 59.033 55.000 0.00 0.00 0.00 2.87
5570 6863 1.343465 GACGTGGACAGGAAGGAAGAA 59.657 52.381 0.00 0.00 0.00 2.52
5571 6864 1.070289 ACGTGGACAGGAAGGAAGAAC 59.930 52.381 0.00 0.00 0.00 3.01
5572 6865 1.608283 CGTGGACAGGAAGGAAGAACC 60.608 57.143 0.00 0.00 39.35 3.62
5573 6866 1.064825 TGGACAGGAAGGAAGAACCC 58.935 55.000 0.00 0.00 40.05 4.11
5574 6867 1.064825 GGACAGGAAGGAAGAACCCA 58.935 55.000 0.00 0.00 40.05 4.51
5575 6868 1.423921 GGACAGGAAGGAAGAACCCAA 59.576 52.381 0.00 0.00 40.05 4.12
5576 6869 2.553247 GGACAGGAAGGAAGAACCCAAG 60.553 54.545 0.00 0.00 40.05 3.61
5577 6870 2.372172 GACAGGAAGGAAGAACCCAAGA 59.628 50.000 0.00 0.00 40.05 3.02
5578 6871 2.783510 ACAGGAAGGAAGAACCCAAGAA 59.216 45.455 0.00 0.00 40.05 2.52
5579 6872 3.181439 ACAGGAAGGAAGAACCCAAGAAG 60.181 47.826 0.00 0.00 40.05 2.85
5580 6873 2.376855 AGGAAGGAAGAACCCAAGAAGG 59.623 50.000 0.00 0.00 40.05 3.46
5581 6874 2.375509 GGAAGGAAGAACCCAAGAAGGA 59.624 50.000 0.00 0.00 41.22 3.36
5582 6875 3.560239 GGAAGGAAGAACCCAAGAAGGAG 60.560 52.174 0.00 0.00 41.22 3.69
5583 6876 1.988846 AGGAAGAACCCAAGAAGGAGG 59.011 52.381 0.00 0.00 41.22 4.30
5584 6877 1.705745 GGAAGAACCCAAGAAGGAGGT 59.294 52.381 0.00 0.00 41.22 3.85
5585 6878 2.108425 GGAAGAACCCAAGAAGGAGGTT 59.892 50.000 0.00 0.00 46.48 3.50
5588 6881 1.430992 AACCCAAGAAGGAGGTTCGA 58.569 50.000 0.00 0.00 39.75 3.71
5589 6882 1.657804 ACCCAAGAAGGAGGTTCGAT 58.342 50.000 0.00 0.00 40.49 3.59
5590 6883 1.985895 ACCCAAGAAGGAGGTTCGATT 59.014 47.619 0.00 0.00 40.49 3.34
5591 6884 3.178865 ACCCAAGAAGGAGGTTCGATTA 58.821 45.455 0.00 0.00 40.49 1.75
5592 6885 3.055312 ACCCAAGAAGGAGGTTCGATTAC 60.055 47.826 0.00 0.00 40.49 1.89
5593 6886 3.055385 CCCAAGAAGGAGGTTCGATTACA 60.055 47.826 0.00 0.00 40.49 2.41
5594 6887 4.184629 CCAAGAAGGAGGTTCGATTACAG 58.815 47.826 0.00 0.00 40.49 2.74
5595 6888 4.184629 CAAGAAGGAGGTTCGATTACAGG 58.815 47.826 0.00 0.00 40.49 4.00
5596 6889 3.709587 AGAAGGAGGTTCGATTACAGGA 58.290 45.455 0.00 0.00 40.49 3.86
5597 6890 3.702045 AGAAGGAGGTTCGATTACAGGAG 59.298 47.826 0.00 0.00 40.49 3.69
5598 6891 2.389715 AGGAGGTTCGATTACAGGAGG 58.610 52.381 0.00 0.00 0.00 4.30
5599 6892 2.024273 AGGAGGTTCGATTACAGGAGGA 60.024 50.000 0.00 0.00 0.00 3.71
5600 6893 2.764572 GGAGGTTCGATTACAGGAGGAA 59.235 50.000 0.00 0.00 0.00 3.36
5601 6894 3.181474 GGAGGTTCGATTACAGGAGGAAG 60.181 52.174 0.00 0.00 0.00 3.46
5602 6895 3.700038 GAGGTTCGATTACAGGAGGAAGA 59.300 47.826 0.00 0.00 0.00 2.87
5603 6896 4.094476 AGGTTCGATTACAGGAGGAAGAA 58.906 43.478 0.00 0.00 0.00 2.52
5604 6897 4.160626 AGGTTCGATTACAGGAGGAAGAAG 59.839 45.833 0.00 0.00 0.00 2.85
5605 6898 4.159879 GGTTCGATTACAGGAGGAAGAAGA 59.840 45.833 0.00 0.00 0.00 2.87
5606 6899 5.163395 GGTTCGATTACAGGAGGAAGAAGAT 60.163 44.000 0.00 0.00 0.00 2.40
5607 6900 6.040616 GGTTCGATTACAGGAGGAAGAAGATA 59.959 42.308 0.00 0.00 0.00 1.98
5608 6901 7.417570 GGTTCGATTACAGGAGGAAGAAGATAA 60.418 40.741 0.00 0.00 0.00 1.75
5609 6902 7.278461 TCGATTACAGGAGGAAGAAGATAAG 57.722 40.000 0.00 0.00 0.00 1.73
5610 6903 6.265649 TCGATTACAGGAGGAAGAAGATAAGG 59.734 42.308 0.00 0.00 0.00 2.69
5611 6904 6.041069 CGATTACAGGAGGAAGAAGATAAGGT 59.959 42.308 0.00 0.00 0.00 3.50
5612 6905 7.418025 CGATTACAGGAGGAAGAAGATAAGGTT 60.418 40.741 0.00 0.00 0.00 3.50
5613 6906 7.569599 TTACAGGAGGAAGAAGATAAGGTTT 57.430 36.000 0.00 0.00 0.00 3.27
5614 6907 5.810095 ACAGGAGGAAGAAGATAAGGTTTG 58.190 41.667 0.00 0.00 0.00 2.93
5615 6908 4.637977 CAGGAGGAAGAAGATAAGGTTTGC 59.362 45.833 0.00 0.00 0.00 3.68
5616 6909 4.538089 AGGAGGAAGAAGATAAGGTTTGCT 59.462 41.667 0.00 0.00 0.00 3.91
5617 6910 4.878971 GGAGGAAGAAGATAAGGTTTGCTC 59.121 45.833 0.00 0.00 36.06 4.26
5618 6911 5.491982 GAGGAAGAAGATAAGGTTTGCTCA 58.508 41.667 0.00 0.00 36.57 4.26
5619 6912 5.880901 AGGAAGAAGATAAGGTTTGCTCAA 58.119 37.500 0.00 0.00 0.00 3.02
5620 6913 6.488715 AGGAAGAAGATAAGGTTTGCTCAAT 58.511 36.000 0.00 0.00 0.00 2.57
5621 6914 7.633789 AGGAAGAAGATAAGGTTTGCTCAATA 58.366 34.615 0.00 0.00 0.00 1.90
5622 6915 7.554476 AGGAAGAAGATAAGGTTTGCTCAATAC 59.446 37.037 0.00 0.00 0.00 1.89
5623 6916 7.336931 GGAAGAAGATAAGGTTTGCTCAATACA 59.663 37.037 0.00 0.00 0.00 2.29
5624 6917 8.814038 AAGAAGATAAGGTTTGCTCAATACAT 57.186 30.769 0.00 0.00 0.00 2.29
5625 6918 8.814038 AGAAGATAAGGTTTGCTCAATACATT 57.186 30.769 0.00 0.00 0.00 2.71
5626 6919 8.897752 AGAAGATAAGGTTTGCTCAATACATTC 58.102 33.333 0.00 0.00 0.00 2.67
5627 6920 8.814038 AAGATAAGGTTTGCTCAATACATTCT 57.186 30.769 0.00 0.00 0.00 2.40
5628 6921 8.814038 AGATAAGGTTTGCTCAATACATTCTT 57.186 30.769 0.00 0.00 0.00 2.52
5629 6922 9.247861 AGATAAGGTTTGCTCAATACATTCTTT 57.752 29.630 0.00 0.00 0.00 2.52
5630 6923 9.860898 GATAAGGTTTGCTCAATACATTCTTTT 57.139 29.630 0.00 0.00 0.00 2.27
5631 6924 9.860898 ATAAGGTTTGCTCAATACATTCTTTTC 57.139 29.630 0.00 0.00 0.00 2.29
5632 6925 7.530426 AGGTTTGCTCAATACATTCTTTTCT 57.470 32.000 0.00 0.00 0.00 2.52
5633 6926 7.597386 AGGTTTGCTCAATACATTCTTTTCTC 58.403 34.615 0.00 0.00 0.00 2.87
5634 6927 6.808704 GGTTTGCTCAATACATTCTTTTCTCC 59.191 38.462 0.00 0.00 0.00 3.71
5635 6928 7.309438 GGTTTGCTCAATACATTCTTTTCTCCT 60.309 37.037 0.00 0.00 0.00 3.69
5636 6929 6.992063 TGCTCAATACATTCTTTTCTCCTC 57.008 37.500 0.00 0.00 0.00 3.71
5637 6930 6.475504 TGCTCAATACATTCTTTTCTCCTCA 58.524 36.000 0.00 0.00 0.00 3.86
5638 6931 6.372659 TGCTCAATACATTCTTTTCTCCTCAC 59.627 38.462 0.00 0.00 0.00 3.51
5639 6932 6.372659 GCTCAATACATTCTTTTCTCCTCACA 59.627 38.462 0.00 0.00 0.00 3.58
5640 6933 7.625185 GCTCAATACATTCTTTTCTCCTCACAC 60.625 40.741 0.00 0.00 0.00 3.82
5641 6934 7.223584 TCAATACATTCTTTTCTCCTCACACA 58.776 34.615 0.00 0.00 0.00 3.72
5642 6935 7.173218 TCAATACATTCTTTTCTCCTCACACAC 59.827 37.037 0.00 0.00 0.00 3.82
5643 6936 3.809832 ACATTCTTTTCTCCTCACACACG 59.190 43.478 0.00 0.00 0.00 4.49
5644 6937 3.812156 TTCTTTTCTCCTCACACACGA 57.188 42.857 0.00 0.00 0.00 4.35
5645 6938 3.093717 TCTTTTCTCCTCACACACGAC 57.906 47.619 0.00 0.00 0.00 4.34
5646 6939 2.693591 TCTTTTCTCCTCACACACGACT 59.306 45.455 0.00 0.00 0.00 4.18
5647 6940 2.509052 TTTCTCCTCACACACGACTG 57.491 50.000 0.00 0.00 0.00 3.51
5648 6941 0.032130 TTCTCCTCACACACGACTGC 59.968 55.000 0.00 0.00 0.00 4.40
5649 6942 1.373497 CTCCTCACACACGACTGCC 60.373 63.158 0.00 0.00 0.00 4.85
5650 6943 1.810606 CTCCTCACACACGACTGCCT 61.811 60.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.461870 TGACATTTCCGGGCTCATCG 60.462 55.000 0.00 0.00 0.00 3.84
283 284 5.048846 AGAAAGCTGGGAGACAAAAGTTA 57.951 39.130 0.00 0.00 0.00 2.24
346 349 1.025812 ACGGACGGAAAATGCAACAA 58.974 45.000 0.00 0.00 0.00 2.83
381 384 6.149474 GTGAGCTAGAGAAAAACATTGCCTTA 59.851 38.462 0.00 0.00 0.00 2.69
679 687 0.386113 ATCGCCGTCTTCTCCTTAGC 59.614 55.000 0.00 0.00 0.00 3.09
686 694 1.813786 GCTATCCTATCGCCGTCTTCT 59.186 52.381 0.00 0.00 0.00 2.85
731 1435 2.031157 CCGCTTTTTGACGATGTTTCCT 60.031 45.455 0.00 0.00 0.00 3.36
755 1502 4.018960 AGGTCAGTGATATGAAAAGCTGGT 60.019 41.667 0.00 0.00 0.00 4.00
799 1546 0.033601 TCTCTCTGAGGACTCTGGGC 60.034 60.000 4.59 0.00 0.00 5.36
866 1613 2.143008 AACGGCGGGTTGAATTTTTC 57.857 45.000 13.24 0.00 37.50 2.29
875 1622 3.906879 GTTTGGCAACGGCGGGTT 61.907 61.111 13.24 0.00 42.47 4.11
958 2110 6.948886 GGTAGATAGAGAGAGAGAGAGAGAGA 59.051 46.154 0.00 0.00 0.00 3.10
965 2117 6.495181 ACAGAGAGGTAGATAGAGAGAGAGAG 59.505 46.154 0.00 0.00 0.00 3.20
967 2119 6.495181 AGACAGAGAGGTAGATAGAGAGAGAG 59.505 46.154 0.00 0.00 0.00 3.20
1179 2331 3.192230 TTGTAATCCGCGGCGCTG 61.192 61.111 30.54 24.16 0.00 5.18
1180 2332 3.192922 GTTGTAATCCGCGGCGCT 61.193 61.111 30.54 13.82 0.00 5.92
1181 2333 4.568876 CGTTGTAATCCGCGGCGC 62.569 66.667 23.51 24.21 0.00 6.53
1749 2907 1.406065 CGACCTGCCATGGGATCTCT 61.406 60.000 15.13 0.00 0.00 3.10
1752 2910 2.111878 CCGACCTGCCATGGGATC 59.888 66.667 15.13 5.24 0.00 3.36
1863 3021 1.446272 GTTCGAGAAGGCGGTGAGG 60.446 63.158 0.00 0.00 0.00 3.86
2160 3318 2.162408 GCCTTGTAGCTCATTGTTGTCC 59.838 50.000 0.00 0.00 0.00 4.02
2197 3355 3.967326 TCAAGAGAGGAGAGGTTGAACAA 59.033 43.478 0.00 0.00 0.00 2.83
2224 3382 2.610374 GGTTGTTGTGCTAGACGTTGAA 59.390 45.455 0.00 0.00 0.00 2.69
2230 3388 2.143925 GGTGAGGTTGTTGTGCTAGAC 58.856 52.381 0.00 0.00 0.00 2.59
2233 3391 0.250124 CCGGTGAGGTTGTTGTGCTA 60.250 55.000 0.00 0.00 34.51 3.49
2355 3513 3.519107 TCTGAACCATCTGTAGCATGGAA 59.481 43.478 6.99 0.00 43.32 3.53
2364 3522 5.290493 TGTTTACTGTCTGAACCATCTGT 57.710 39.130 0.00 0.00 0.00 3.41
2502 3660 2.231478 GCTGCAGTTGGTCAGACTAGTA 59.769 50.000 16.64 0.00 32.26 1.82
2550 3708 0.746659 GCACACCTTGGAGCTTGTTT 59.253 50.000 0.00 0.00 0.00 2.83
2655 3813 6.139679 TCCAAGTTGATGAAGTTCCCTATT 57.860 37.500 3.87 0.00 0.00 1.73
2674 3832 6.669125 ATTTTCCATGTCAAGTTCATCCAA 57.331 33.333 0.00 0.00 0.00 3.53
2757 3915 7.173907 CCTGACAAGTTGTTATTTGACAGAGAT 59.826 37.037 10.45 0.00 44.27 2.75
2787 3945 1.965414 TTCCAAGAGCCACTGGGATA 58.035 50.000 5.60 0.00 46.97 2.59
2837 3995 3.377346 CTCCACTGAGCGCATTAGTAT 57.623 47.619 11.47 0.00 0.00 2.12
2893 4051 6.597280 AGATTGTTGTAAGAAAGATCCAGCTC 59.403 38.462 0.00 0.00 0.00 4.09
2940 4098 3.582208 ACAAGCTTGAGATGAGGAAGAGT 59.418 43.478 32.50 1.82 0.00 3.24
2943 4101 2.928757 CGACAAGCTTGAGATGAGGAAG 59.071 50.000 32.50 1.74 0.00 3.46
2968 4126 7.012610 CAGTGAATTATGTGCAAGATACATGGA 59.987 37.037 0.00 0.00 39.03 3.41
3143 4301 0.098200 TAGTGACAGCGGAATCGTCG 59.902 55.000 0.00 0.00 38.89 5.12
3181 4339 4.111375 TCCGAGAAAGATCAAGCACTAC 57.889 45.455 0.00 0.00 0.00 2.73
3237 4395 1.747355 CTAGCAAGGCCTTTCATGGTG 59.253 52.381 17.61 4.32 0.00 4.17
3249 4407 7.106239 TGGAAGAGAGATTTAAACTAGCAAGG 58.894 38.462 0.00 0.00 0.00 3.61
3261 4419 8.529476 CCTTCAAAATCATTGGAAGAGAGATTT 58.471 33.333 11.79 0.00 45.76 2.17
3322 4480 2.401766 CCATGACCGAGGTTGCAGC 61.402 63.158 0.00 0.00 0.00 5.25
3333 4491 1.168714 GAGCACTGTTTCCCATGACC 58.831 55.000 0.00 0.00 0.00 4.02
3483 4641 5.689819 AGCTTGCTTCTTTTACATAACACG 58.310 37.500 0.00 0.00 0.00 4.49
3509 4667 5.046304 AGAGTTATCTGTGGCTTTGCTCTTA 60.046 40.000 0.00 0.00 33.30 2.10
3552 4710 6.716628 TGACCAATTCAGCATAAGAAACTCTT 59.283 34.615 0.00 0.00 40.35 2.85
3575 4733 2.622942 GTGAAACCATCTGTTGCCTTGA 59.377 45.455 0.00 0.00 37.23 3.02
3603 4761 1.229177 GCCCACCCCAATGAGGTTT 60.229 57.895 0.00 0.00 34.56 3.27
3612 4770 4.619320 CCAAAGCTGCCCACCCCA 62.619 66.667 0.00 0.00 0.00 4.96
3618 4776 2.914097 ACTGCACCAAAGCTGCCC 60.914 61.111 0.00 0.00 37.00 5.36
3673 4831 1.279271 GAGTACCTTCACTGCCACCAT 59.721 52.381 0.00 0.00 0.00 3.55
3746 4904 3.425578 CGATGGCGGATACATCTCC 57.574 57.895 0.00 0.00 41.91 3.71
3805 4963 1.461091 TTGAAGTCGCCACCTCGAGT 61.461 55.000 12.31 0.00 43.23 4.18
3883 5041 2.426024 TGGGTTCGTTATCTTCCTCGAG 59.574 50.000 5.13 5.13 33.98 4.04
3895 5053 3.452627 AGATCTAGCATCTTGGGTTCGTT 59.547 43.478 0.00 0.00 0.00 3.85
3922 5080 2.562635 CATGGCAATCTGGAGTCTCTG 58.437 52.381 0.00 0.00 0.00 3.35
3924 5082 1.307097 GCATGGCAATCTGGAGTCTC 58.693 55.000 0.00 0.00 0.00 3.36
3930 5088 1.138036 CACGTGCATGGCAATCTGG 59.862 57.895 11.36 0.00 41.47 3.86
3969 5127 1.064654 GGAAACGGCTTCTGATGATGC 59.935 52.381 0.00 0.00 41.08 3.91
4002 5160 2.877097 TATTGCTTGGCTTGAGGTCA 57.123 45.000 0.00 0.00 0.00 4.02
4047 5205 0.173255 GCCCAAAATCACCGACATGG 59.827 55.000 0.00 0.00 46.41 3.66
4088 5246 5.934625 GGTGTCTCTGACTTGTCATTATGTT 59.065 40.000 3.79 0.00 33.15 2.71
4125 5283 4.082245 CCAATTGTTCCTCTTATTGCGGTT 60.082 41.667 4.43 0.00 0.00 4.44
4224 5497 0.622665 AGTGCTTCCTTGGATGGAGG 59.377 55.000 4.98 0.00 37.43 4.30
4246 5519 5.898630 AACAAACGTGGCAAATTTGATAC 57.101 34.783 22.31 16.58 36.91 2.24
4248 5521 7.489574 AATTAACAAACGTGGCAAATTTGAT 57.510 28.000 22.31 17.36 36.91 2.57
4249 5522 6.910536 AATTAACAAACGTGGCAAATTTGA 57.089 29.167 22.31 0.00 36.91 2.69
4250 5523 7.182761 TGAAATTAACAAACGTGGCAAATTTG 58.817 30.769 14.03 14.03 38.89 2.32
4317 5590 3.886549 CAGCAGTATACCGTAGCTGTAC 58.113 50.000 20.34 0.00 45.57 2.90
4446 5719 5.175859 TCTGCTTTTAATAGGTCTTGGTCG 58.824 41.667 0.00 0.00 0.00 4.79
4503 5776 6.105333 ACTAATTCTCATGTCTTCACTGCTC 58.895 40.000 0.00 0.00 0.00 4.26
4730 6003 8.397906 CGAATCAGATTCTAAAACCATTGCTTA 58.602 33.333 19.05 0.00 37.13 3.09
4731 6004 7.121168 TCGAATCAGATTCTAAAACCATTGCTT 59.879 33.333 19.05 0.00 37.13 3.91
4732 6005 6.599244 TCGAATCAGATTCTAAAACCATTGCT 59.401 34.615 19.05 0.00 37.13 3.91
4733 6006 6.785191 TCGAATCAGATTCTAAAACCATTGC 58.215 36.000 19.05 0.00 37.13 3.56
4737 6010 9.884636 TTTCTATCGAATCAGATTCTAAAACCA 57.115 29.630 19.05 0.00 37.13 3.67
4777 6050 9.673454 GCTTTTTCGAGTTAGAATAAAAGGAAA 57.327 29.630 13.59 0.00 32.65 3.13
4778 6051 9.063615 AGCTTTTTCGAGTTAGAATAAAAGGAA 57.936 29.630 13.59 0.00 32.65 3.36
4779 6052 8.617290 AGCTTTTTCGAGTTAGAATAAAAGGA 57.383 30.769 13.59 0.00 32.65 3.36
4780 6053 9.974750 CTAGCTTTTTCGAGTTAGAATAAAAGG 57.025 33.333 13.59 0.00 33.72 3.11
4783 6056 8.857216 CGACTAGCTTTTTCGAGTTAGAATAAA 58.143 33.333 0.00 0.00 35.00 1.40
4784 6057 8.025445 ACGACTAGCTTTTTCGAGTTAGAATAA 58.975 33.333 15.70 0.00 35.00 1.40
4785 6058 7.533426 ACGACTAGCTTTTTCGAGTTAGAATA 58.467 34.615 15.70 0.00 35.00 1.75
4786 6059 6.388278 ACGACTAGCTTTTTCGAGTTAGAAT 58.612 36.000 15.70 0.00 35.00 2.40
4787 6060 5.766222 ACGACTAGCTTTTTCGAGTTAGAA 58.234 37.500 15.70 0.00 35.00 2.10
4788 6061 5.368256 ACGACTAGCTTTTTCGAGTTAGA 57.632 39.130 15.70 0.00 35.00 2.10
4789 6062 6.449448 AAACGACTAGCTTTTTCGAGTTAG 57.551 37.500 15.70 3.52 36.76 2.34
4790 6063 6.833342 AAAACGACTAGCTTTTTCGAGTTA 57.167 33.333 15.70 0.00 36.58 2.24
4791 6064 5.729974 AAAACGACTAGCTTTTTCGAGTT 57.270 34.783 15.70 8.10 36.58 3.01
4792 6065 6.478016 AGTTAAAACGACTAGCTTTTTCGAGT 59.522 34.615 15.70 1.48 36.58 4.18
4793 6066 6.874704 AGTTAAAACGACTAGCTTTTTCGAG 58.125 36.000 15.70 0.00 36.58 4.04
4794 6067 6.698766 AGAGTTAAAACGACTAGCTTTTTCGA 59.301 34.615 15.70 0.00 36.58 3.71
4795 6068 6.786103 CAGAGTTAAAACGACTAGCTTTTTCG 59.214 38.462 9.12 9.12 38.73 3.46
4796 6069 7.628235 ACAGAGTTAAAACGACTAGCTTTTTC 58.372 34.615 0.00 0.00 31.39 2.29
4797 6070 7.549615 ACAGAGTTAAAACGACTAGCTTTTT 57.450 32.000 0.00 0.00 33.24 1.94
4798 6071 7.924947 AGTACAGAGTTAAAACGACTAGCTTTT 59.075 33.333 0.00 0.00 0.00 2.27
4799 6072 7.432059 AGTACAGAGTTAAAACGACTAGCTTT 58.568 34.615 0.00 0.00 0.00 3.51
4802 6075 8.233190 TCTTAGTACAGAGTTAAAACGACTAGC 58.767 37.037 0.00 0.00 0.00 3.42
4895 6168 8.974060 ATTTCTTTACTTTCCTGTCAACACTA 57.026 30.769 0.00 0.00 0.00 2.74
4901 6174 8.746052 TCTGAAATTTCTTTACTTTCCTGTCA 57.254 30.769 18.64 0.00 0.00 3.58
4922 6195 9.490379 GTTAAGTTTCTTCAGTTCCTTATCTGA 57.510 33.333 0.00 0.00 38.66 3.27
4977 6252 2.029918 TGAGACAGTGAGATTGACACCG 60.030 50.000 0.00 0.00 38.82 4.94
4983 6258 4.732672 TCATCCTGAGACAGTGAGATTG 57.267 45.455 0.00 0.00 0.00 2.67
5005 6280 1.524621 CGCATCCACCAGATCCACC 60.525 63.158 0.00 0.00 30.59 4.61
5006 6281 1.524621 CCGCATCCACCAGATCCAC 60.525 63.158 0.00 0.00 30.59 4.02
5016 6291 2.690510 TGGGTCCATCCGCATCCA 60.691 61.111 0.00 0.00 37.00 3.41
5055 6348 7.986889 GGTTGGGATAAAATCTGCAACAATATT 59.013 33.333 0.00 0.00 0.00 1.28
5056 6349 7.125507 TGGTTGGGATAAAATCTGCAACAATAT 59.874 33.333 0.00 0.00 0.00 1.28
5061 6354 4.220602 ACTGGTTGGGATAAAATCTGCAAC 59.779 41.667 0.00 0.00 0.00 4.17
5074 6367 2.638855 ACGGTATTTGTACTGGTTGGGA 59.361 45.455 0.00 0.00 0.00 4.37
5079 6372 8.885722 CATATGTAAAACGGTATTTGTACTGGT 58.114 33.333 0.00 0.00 0.00 4.00
5089 6382 7.330208 GCGTATTCCTCATATGTAAAACGGTAT 59.670 37.037 1.90 0.00 0.00 2.73
5090 6383 6.642131 GCGTATTCCTCATATGTAAAACGGTA 59.358 38.462 1.90 0.00 0.00 4.02
5091 6384 5.464389 GCGTATTCCTCATATGTAAAACGGT 59.536 40.000 1.90 0.00 0.00 4.83
5092 6385 5.464057 TGCGTATTCCTCATATGTAAAACGG 59.536 40.000 1.90 0.00 0.00 4.44
5093 6386 6.519353 TGCGTATTCCTCATATGTAAAACG 57.481 37.500 1.90 7.88 0.00 3.60
5094 6387 8.083462 TCATGCGTATTCCTCATATGTAAAAC 57.917 34.615 1.90 0.00 0.00 2.43
5095 6388 8.669946 TTCATGCGTATTCCTCATATGTAAAA 57.330 30.769 1.90 0.00 0.00 1.52
5096 6389 8.669946 TTTCATGCGTATTCCTCATATGTAAA 57.330 30.769 1.90 0.00 0.00 2.01
5097 6390 8.669946 TTTTCATGCGTATTCCTCATATGTAA 57.330 30.769 1.90 0.00 0.00 2.41
5098 6391 8.669946 TTTTTCATGCGTATTCCTCATATGTA 57.330 30.769 1.90 0.00 0.00 2.29
5099 6392 7.566760 TTTTTCATGCGTATTCCTCATATGT 57.433 32.000 1.90 0.00 0.00 2.29
5120 6413 4.096732 GCGATAAGCCTCATGTGTTTTT 57.903 40.909 0.00 0.00 40.81 1.94
5121 6414 3.764885 GCGATAAGCCTCATGTGTTTT 57.235 42.857 0.00 0.00 40.81 2.43
5186 6479 1.467713 CGTCTCCGAACAGGCTCTTAC 60.468 57.143 0.00 0.00 40.77 2.34
5187 6480 0.809385 CGTCTCCGAACAGGCTCTTA 59.191 55.000 0.00 0.00 40.77 2.10
5188 6481 1.587054 CGTCTCCGAACAGGCTCTT 59.413 57.895 0.00 0.00 40.77 2.85
5189 6482 2.995872 GCGTCTCCGAACAGGCTCT 61.996 63.158 0.00 0.00 40.77 4.09
5190 6483 2.507324 GCGTCTCCGAACAGGCTC 60.507 66.667 0.00 0.00 40.77 4.70
5191 6484 2.992114 AGCGTCTCCGAACAGGCT 60.992 61.111 0.00 0.00 40.77 4.58
5192 6485 2.507324 GAGCGTCTCCGAACAGGC 60.507 66.667 0.00 0.00 40.77 4.85
5193 6486 2.182030 GGAGCGTCTCCGAACAGG 59.818 66.667 9.63 0.00 41.08 4.00
5210 6503 4.379243 AAGTGGCCTCGTGGAGCG 62.379 66.667 7.92 0.00 43.01 5.03
5211 6504 2.435059 GAAGTGGCCTCGTGGAGC 60.435 66.667 7.92 0.00 34.57 4.70
5212 6505 2.266055 GGAAGTGGCCTCGTGGAG 59.734 66.667 7.92 0.00 34.57 3.86
5213 6506 3.319198 GGGAAGTGGCCTCGTGGA 61.319 66.667 7.92 0.00 34.57 4.02
5214 6507 4.760047 CGGGAAGTGGCCTCGTGG 62.760 72.222 3.32 0.00 0.00 4.94
5215 6508 4.760047 CCGGGAAGTGGCCTCGTG 62.760 72.222 3.32 0.00 0.00 4.35
5217 6510 4.148825 CTCCGGGAAGTGGCCTCG 62.149 72.222 3.32 0.00 0.00 4.63
5218 6511 4.475135 GCTCCGGGAAGTGGCCTC 62.475 72.222 3.32 0.00 0.00 4.70
5235 6528 2.515996 TTTAACTGGAGCTCCGCCCG 62.516 60.000 27.43 17.22 39.43 6.13
5236 6529 0.322187 TTTTAACTGGAGCTCCGCCC 60.322 55.000 27.43 5.13 39.43 6.13
5237 6530 1.751437 ATTTTAACTGGAGCTCCGCC 58.249 50.000 27.43 5.54 39.43 6.13
5238 6531 2.223044 CGAATTTTAACTGGAGCTCCGC 60.223 50.000 27.43 5.60 39.43 5.54
5239 6532 2.223044 GCGAATTTTAACTGGAGCTCCG 60.223 50.000 27.43 22.72 39.43 4.63
5240 6533 2.223044 CGCGAATTTTAACTGGAGCTCC 60.223 50.000 26.78 26.78 0.00 4.70
5241 6534 2.223044 CCGCGAATTTTAACTGGAGCTC 60.223 50.000 8.23 4.71 0.00 4.09
5242 6535 1.737793 CCGCGAATTTTAACTGGAGCT 59.262 47.619 8.23 0.00 0.00 4.09
5243 6536 1.735571 TCCGCGAATTTTAACTGGAGC 59.264 47.619 8.23 0.00 0.00 4.70
5244 6537 2.223044 GCTCCGCGAATTTTAACTGGAG 60.223 50.000 8.23 1.45 43.41 3.86
5245 6538 1.735571 GCTCCGCGAATTTTAACTGGA 59.264 47.619 8.23 0.00 0.00 3.86
5246 6539 2.174060 GCTCCGCGAATTTTAACTGG 57.826 50.000 8.23 0.00 0.00 4.00
5266 6559 4.284550 TGGAGCACCCACTTGCCC 62.285 66.667 0.00 0.00 44.14 5.36
5273 6566 1.685224 GGAATCTGTGGAGCACCCA 59.315 57.895 0.00 0.00 44.25 4.51
5274 6567 1.450312 CGGAATCTGTGGAGCACCC 60.450 63.158 0.00 0.00 32.73 4.61
5275 6568 0.036388 TTCGGAATCTGTGGAGCACC 60.036 55.000 0.00 0.00 32.73 5.01
5276 6569 1.808411 TTTCGGAATCTGTGGAGCAC 58.192 50.000 0.00 0.00 34.56 4.40
5277 6570 2.787473 ATTTCGGAATCTGTGGAGCA 57.213 45.000 0.00 0.00 0.00 4.26
5278 6571 3.440173 TGAAATTTCGGAATCTGTGGAGC 59.560 43.478 13.34 0.00 0.00 4.70
5279 6572 4.095483 CCTGAAATTTCGGAATCTGTGGAG 59.905 45.833 25.55 7.51 35.56 3.86
5280 6573 4.009675 CCTGAAATTTCGGAATCTGTGGA 58.990 43.478 25.55 0.00 35.56 4.02
5281 6574 4.009675 TCCTGAAATTTCGGAATCTGTGG 58.990 43.478 25.55 8.57 35.56 4.17
5282 6575 5.627499 TTCCTGAAATTTCGGAATCTGTG 57.373 39.130 26.53 12.79 36.06 3.66
5283 6576 4.156739 GCTTCCTGAAATTTCGGAATCTGT 59.843 41.667 28.53 0.00 38.34 3.41
5284 6577 4.156556 TGCTTCCTGAAATTTCGGAATCTG 59.843 41.667 28.53 22.18 38.34 2.90
5285 6578 4.335416 TGCTTCCTGAAATTTCGGAATCT 58.665 39.130 28.53 0.00 38.34 2.40
5286 6579 4.439289 CCTGCTTCCTGAAATTTCGGAATC 60.439 45.833 28.53 25.99 38.34 2.52
5287 6580 3.445096 CCTGCTTCCTGAAATTTCGGAAT 59.555 43.478 28.53 0.00 38.34 3.01
5288 6581 2.819608 CCTGCTTCCTGAAATTTCGGAA 59.180 45.455 27.49 27.49 37.45 4.30
5289 6582 2.224769 ACCTGCTTCCTGAAATTTCGGA 60.225 45.455 25.55 22.77 35.56 4.55
5290 6583 2.095059 CACCTGCTTCCTGAAATTTCGG 60.095 50.000 18.52 18.52 0.00 4.30
5291 6584 2.095059 CCACCTGCTTCCTGAAATTTCG 60.095 50.000 13.34 8.11 0.00 3.46
5292 6585 3.057245 GTCCACCTGCTTCCTGAAATTTC 60.057 47.826 11.41 11.41 0.00 2.17
5293 6586 2.893489 GTCCACCTGCTTCCTGAAATTT 59.107 45.455 0.00 0.00 0.00 1.82
5294 6587 2.158475 TGTCCACCTGCTTCCTGAAATT 60.158 45.455 0.00 0.00 0.00 1.82
5295 6588 1.425066 TGTCCACCTGCTTCCTGAAAT 59.575 47.619 0.00 0.00 0.00 2.17
5296 6589 0.843309 TGTCCACCTGCTTCCTGAAA 59.157 50.000 0.00 0.00 0.00 2.69
5297 6590 1.003580 GATGTCCACCTGCTTCCTGAA 59.996 52.381 0.00 0.00 0.00 3.02
5298 6591 0.615331 GATGTCCACCTGCTTCCTGA 59.385 55.000 0.00 0.00 0.00 3.86
5299 6592 0.393537 GGATGTCCACCTGCTTCCTG 60.394 60.000 0.00 0.00 35.64 3.86
5300 6593 0.842030 TGGATGTCCACCTGCTTCCT 60.842 55.000 0.00 0.00 42.01 3.36
5301 6594 1.685224 TGGATGTCCACCTGCTTCC 59.315 57.895 0.00 0.00 42.01 3.46
5316 6609 4.285260 GGTTAGACTTAGGTCCTGTTTGGA 59.715 45.833 0.00 0.00 43.05 3.53
5317 6610 4.041198 TGGTTAGACTTAGGTCCTGTTTGG 59.959 45.833 0.00 0.00 43.05 3.28
5318 6611 5.223449 TGGTTAGACTTAGGTCCTGTTTG 57.777 43.478 0.00 0.00 43.05 2.93
5319 6612 6.729569 AGTATGGTTAGACTTAGGTCCTGTTT 59.270 38.462 0.00 0.00 43.05 2.83
5320 6613 6.262207 AGTATGGTTAGACTTAGGTCCTGTT 58.738 40.000 0.00 0.00 43.05 3.16
5321 6614 5.840081 AGTATGGTTAGACTTAGGTCCTGT 58.160 41.667 0.00 0.00 43.05 4.00
5322 6615 6.793505 AAGTATGGTTAGACTTAGGTCCTG 57.206 41.667 0.00 0.00 43.05 3.86
5323 6616 6.383436 GGAAAGTATGGTTAGACTTAGGTCCT 59.617 42.308 0.61 0.00 43.05 3.85
5324 6617 6.155737 TGGAAAGTATGGTTAGACTTAGGTCC 59.844 42.308 0.61 0.00 43.05 4.46
5325 6618 7.040494 GTGGAAAGTATGGTTAGACTTAGGTC 58.960 42.308 0.00 0.00 37.37 3.85
5326 6619 6.350780 CGTGGAAAGTATGGTTAGACTTAGGT 60.351 42.308 0.00 0.00 37.37 3.08
5327 6620 6.040878 CGTGGAAAGTATGGTTAGACTTAGG 58.959 44.000 0.00 0.00 37.37 2.69
5328 6621 6.628185 ACGTGGAAAGTATGGTTAGACTTAG 58.372 40.000 0.00 0.00 37.37 2.18
5385 6678 1.817099 GCACCTTCGAGCCTCATGG 60.817 63.158 0.00 0.00 0.00 3.66
5490 6783 3.951765 GGGAGTTCTACCCGAGGG 58.048 66.667 6.63 6.63 37.85 4.30
5496 6789 1.694696 CCATGGCTAGGGAGTTCTACC 59.305 57.143 0.00 0.00 0.00 3.18
5497 6790 1.070914 GCCATGGCTAGGGAGTTCTAC 59.929 57.143 29.98 0.00 38.26 2.59
5498 6791 1.424638 GCCATGGCTAGGGAGTTCTA 58.575 55.000 29.98 0.00 38.26 2.10
5499 6792 1.348775 GGCCATGGCTAGGGAGTTCT 61.349 60.000 34.70 0.00 41.60 3.01
5500 6793 1.149401 GGCCATGGCTAGGGAGTTC 59.851 63.158 34.70 12.27 41.60 3.01
5501 6794 2.746375 CGGCCATGGCTAGGGAGTT 61.746 63.158 34.70 0.00 41.60 3.01
5502 6795 3.164269 CGGCCATGGCTAGGGAGT 61.164 66.667 34.70 0.00 41.60 3.85
5503 6796 3.946201 CCGGCCATGGCTAGGGAG 61.946 72.222 34.70 18.39 41.60 4.30
5507 6800 4.569180 CACCCCGGCCATGGCTAG 62.569 72.222 34.70 26.96 41.60 3.42
5512 6805 3.660422 ATTCCACACCCCGGCCATG 62.660 63.158 2.24 0.00 0.00 3.66
5513 6806 3.346734 ATTCCACACCCCGGCCAT 61.347 61.111 2.24 0.00 0.00 4.40
5514 6807 4.041762 GATTCCACACCCCGGCCA 62.042 66.667 2.24 0.00 0.00 5.36
5516 6809 4.404098 ACGATTCCACACCCCGGC 62.404 66.667 0.00 0.00 0.00 6.13
5517 6810 2.125269 GACGATTCCACACCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
5518 6811 2.495366 TTCGACGATTCCACACCCCG 62.495 60.000 0.00 0.00 0.00 5.73
5519 6812 0.107848 ATTCGACGATTCCACACCCC 60.108 55.000 0.00 0.00 0.00 4.95
5520 6813 1.664151 GAATTCGACGATTCCACACCC 59.336 52.381 0.00 0.00 31.33 4.61
5521 6814 2.343101 TGAATTCGACGATTCCACACC 58.657 47.619 0.00 0.00 35.61 4.16
5522 6815 3.250744 TCTGAATTCGACGATTCCACAC 58.749 45.455 0.00 0.00 35.61 3.82
5523 6816 3.192633 TCTCTGAATTCGACGATTCCACA 59.807 43.478 0.00 0.00 35.61 4.17
5524 6817 3.770666 TCTCTGAATTCGACGATTCCAC 58.229 45.455 0.00 0.00 35.61 4.02
5525 6818 4.424626 CTTCTCTGAATTCGACGATTCCA 58.575 43.478 0.00 0.00 35.61 3.53
5526 6819 3.799420 CCTTCTCTGAATTCGACGATTCC 59.201 47.826 0.00 0.00 35.61 3.01
5527 6820 4.673441 TCCTTCTCTGAATTCGACGATTC 58.327 43.478 0.00 5.80 36.73 2.52
5528 6821 4.399618 TCTCCTTCTCTGAATTCGACGATT 59.600 41.667 0.00 0.00 0.00 3.34
5529 6822 3.948473 TCTCCTTCTCTGAATTCGACGAT 59.052 43.478 0.00 0.00 0.00 3.73
5530 6823 3.127203 GTCTCCTTCTCTGAATTCGACGA 59.873 47.826 0.04 0.00 0.00 4.20
5531 6824 3.430931 GTCTCCTTCTCTGAATTCGACG 58.569 50.000 0.04 0.00 0.00 5.12
5532 6825 3.119779 ACGTCTCCTTCTCTGAATTCGAC 60.120 47.826 0.04 0.00 0.00 4.20
5533 6826 3.082548 ACGTCTCCTTCTCTGAATTCGA 58.917 45.455 0.04 0.70 0.00 3.71
5534 6827 3.175152 CACGTCTCCTTCTCTGAATTCG 58.825 50.000 0.04 0.00 0.00 3.34
5535 6828 3.193691 TCCACGTCTCCTTCTCTGAATTC 59.806 47.826 0.00 0.00 0.00 2.17
5536 6829 3.056465 GTCCACGTCTCCTTCTCTGAATT 60.056 47.826 0.00 0.00 0.00 2.17
5537 6830 2.494073 GTCCACGTCTCCTTCTCTGAAT 59.506 50.000 0.00 0.00 0.00 2.57
5538 6831 1.887198 GTCCACGTCTCCTTCTCTGAA 59.113 52.381 0.00 0.00 0.00 3.02
5539 6832 1.202891 TGTCCACGTCTCCTTCTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
5540 6833 1.201181 CTGTCCACGTCTCCTTCTCTG 59.799 57.143 0.00 0.00 0.00 3.35
5541 6834 1.540267 CTGTCCACGTCTCCTTCTCT 58.460 55.000 0.00 0.00 0.00 3.10
5542 6835 0.528470 CCTGTCCACGTCTCCTTCTC 59.472 60.000 0.00 0.00 0.00 2.87
5543 6836 0.112606 TCCTGTCCACGTCTCCTTCT 59.887 55.000 0.00 0.00 0.00 2.85
5544 6837 0.966920 TTCCTGTCCACGTCTCCTTC 59.033 55.000 0.00 0.00 0.00 3.46
5545 6838 0.969894 CTTCCTGTCCACGTCTCCTT 59.030 55.000 0.00 0.00 0.00 3.36
5546 6839 0.900647 CCTTCCTGTCCACGTCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
5547 6840 0.898789 TCCTTCCTGTCCACGTCTCC 60.899 60.000 0.00 0.00 0.00 3.71
5548 6841 0.966920 TTCCTTCCTGTCCACGTCTC 59.033 55.000 0.00 0.00 0.00 3.36
5549 6842 0.969894 CTTCCTTCCTGTCCACGTCT 59.030 55.000 0.00 0.00 0.00 4.18
5550 6843 0.966920 TCTTCCTTCCTGTCCACGTC 59.033 55.000 0.00 0.00 0.00 4.34
5551 6844 1.070289 GTTCTTCCTTCCTGTCCACGT 59.930 52.381 0.00 0.00 0.00 4.49
5552 6845 1.608283 GGTTCTTCCTTCCTGTCCACG 60.608 57.143 0.00 0.00 0.00 4.94
5553 6846 1.271434 GGGTTCTTCCTTCCTGTCCAC 60.271 57.143 0.00 0.00 36.25 4.02
5554 6847 1.064825 GGGTTCTTCCTTCCTGTCCA 58.935 55.000 0.00 0.00 36.25 4.02
5555 6848 1.064825 TGGGTTCTTCCTTCCTGTCC 58.935 55.000 0.00 0.00 36.25 4.02
5556 6849 2.372172 TCTTGGGTTCTTCCTTCCTGTC 59.628 50.000 0.00 0.00 36.25 3.51
5557 6850 2.418669 TCTTGGGTTCTTCCTTCCTGT 58.581 47.619 0.00 0.00 36.25 4.00
5558 6851 3.416156 CTTCTTGGGTTCTTCCTTCCTG 58.584 50.000 0.00 0.00 36.25 3.86
5559 6852 2.376855 CCTTCTTGGGTTCTTCCTTCCT 59.623 50.000 0.00 0.00 36.25 3.36
5560 6853 2.375509 TCCTTCTTGGGTTCTTCCTTCC 59.624 50.000 0.00 0.00 36.20 3.46
5561 6854 3.560239 CCTCCTTCTTGGGTTCTTCCTTC 60.560 52.174 0.00 0.00 36.20 3.46
5562 6855 2.376855 CCTCCTTCTTGGGTTCTTCCTT 59.623 50.000 0.00 0.00 36.20 3.36
5563 6856 1.988846 CCTCCTTCTTGGGTTCTTCCT 59.011 52.381 0.00 0.00 36.20 3.36
5564 6857 1.705745 ACCTCCTTCTTGGGTTCTTCC 59.294 52.381 0.00 0.00 36.20 3.46
5565 6858 3.510531 AACCTCCTTCTTGGGTTCTTC 57.489 47.619 0.00 0.00 38.80 2.87
5569 6862 1.430992 TCGAACCTCCTTCTTGGGTT 58.569 50.000 0.00 0.00 44.78 4.11
5570 6863 1.657804 ATCGAACCTCCTTCTTGGGT 58.342 50.000 0.00 0.00 36.20 4.51
5571 6864 2.789409 AATCGAACCTCCTTCTTGGG 57.211 50.000 0.00 0.00 36.20 4.12
5572 6865 4.184629 CTGTAATCGAACCTCCTTCTTGG 58.815 47.826 0.00 0.00 37.10 3.61
5573 6866 4.081642 TCCTGTAATCGAACCTCCTTCTTG 60.082 45.833 0.00 0.00 0.00 3.02
5574 6867 4.094476 TCCTGTAATCGAACCTCCTTCTT 58.906 43.478 0.00 0.00 0.00 2.52
5575 6868 3.702045 CTCCTGTAATCGAACCTCCTTCT 59.298 47.826 0.00 0.00 0.00 2.85
5576 6869 3.181474 CCTCCTGTAATCGAACCTCCTTC 60.181 52.174 0.00 0.00 0.00 3.46
5577 6870 2.766828 CCTCCTGTAATCGAACCTCCTT 59.233 50.000 0.00 0.00 0.00 3.36
5578 6871 2.024273 TCCTCCTGTAATCGAACCTCCT 60.024 50.000 0.00 0.00 0.00 3.69
5579 6872 2.385803 TCCTCCTGTAATCGAACCTCC 58.614 52.381 0.00 0.00 0.00 4.30
5580 6873 3.700038 TCTTCCTCCTGTAATCGAACCTC 59.300 47.826 0.00 0.00 0.00 3.85
5581 6874 3.709587 TCTTCCTCCTGTAATCGAACCT 58.290 45.455 0.00 0.00 0.00 3.50
5582 6875 4.159879 TCTTCTTCCTCCTGTAATCGAACC 59.840 45.833 0.00 0.00 0.00 3.62
5583 6876 5.326200 TCTTCTTCCTCCTGTAATCGAAC 57.674 43.478 0.00 0.00 0.00 3.95
5584 6877 7.201920 CCTTATCTTCTTCCTCCTGTAATCGAA 60.202 40.741 0.00 0.00 0.00 3.71
5585 6878 6.265649 CCTTATCTTCTTCCTCCTGTAATCGA 59.734 42.308 0.00 0.00 0.00 3.59
5586 6879 6.041069 ACCTTATCTTCTTCCTCCTGTAATCG 59.959 42.308 0.00 0.00 0.00 3.34
5587 6880 7.368198 ACCTTATCTTCTTCCTCCTGTAATC 57.632 40.000 0.00 0.00 0.00 1.75
5588 6881 7.757242 AACCTTATCTTCTTCCTCCTGTAAT 57.243 36.000 0.00 0.00 0.00 1.89
5589 6882 7.394816 CAAACCTTATCTTCTTCCTCCTGTAA 58.605 38.462 0.00 0.00 0.00 2.41
5590 6883 6.576442 GCAAACCTTATCTTCTTCCTCCTGTA 60.576 42.308 0.00 0.00 0.00 2.74
5591 6884 5.804771 GCAAACCTTATCTTCTTCCTCCTGT 60.805 44.000 0.00 0.00 0.00 4.00
5592 6885 4.637977 GCAAACCTTATCTTCTTCCTCCTG 59.362 45.833 0.00 0.00 0.00 3.86
5593 6886 4.538089 AGCAAACCTTATCTTCTTCCTCCT 59.462 41.667 0.00 0.00 0.00 3.69
5594 6887 4.849518 AGCAAACCTTATCTTCTTCCTCC 58.150 43.478 0.00 0.00 0.00 4.30
5595 6888 5.491982 TGAGCAAACCTTATCTTCTTCCTC 58.508 41.667 0.00 0.00 0.00 3.71
5596 6889 5.505181 TGAGCAAACCTTATCTTCTTCCT 57.495 39.130 0.00 0.00 0.00 3.36
5597 6890 6.765915 ATTGAGCAAACCTTATCTTCTTCC 57.234 37.500 0.00 0.00 0.00 3.46
5598 6891 8.268850 TGTATTGAGCAAACCTTATCTTCTTC 57.731 34.615 0.00 0.00 0.00 2.87
5599 6892 8.814038 ATGTATTGAGCAAACCTTATCTTCTT 57.186 30.769 0.00 0.00 0.00 2.52
5600 6893 8.814038 AATGTATTGAGCAAACCTTATCTTCT 57.186 30.769 0.00 0.00 0.00 2.85
5601 6894 8.897752 AGAATGTATTGAGCAAACCTTATCTTC 58.102 33.333 0.00 0.00 0.00 2.87
5602 6895 8.814038 AGAATGTATTGAGCAAACCTTATCTT 57.186 30.769 0.00 0.00 0.00 2.40
5603 6896 8.814038 AAGAATGTATTGAGCAAACCTTATCT 57.186 30.769 0.00 0.00 0.00 1.98
5604 6897 9.860898 AAAAGAATGTATTGAGCAAACCTTATC 57.139 29.630 0.00 0.00 0.00 1.75
5605 6898 9.860898 GAAAAGAATGTATTGAGCAAACCTTAT 57.139 29.630 0.00 0.00 0.00 1.73
5606 6899 9.077885 AGAAAAGAATGTATTGAGCAAACCTTA 57.922 29.630 0.00 0.00 0.00 2.69
5607 6900 7.955918 AGAAAAGAATGTATTGAGCAAACCTT 58.044 30.769 0.00 0.00 0.00 3.50
5608 6901 7.309438 GGAGAAAAGAATGTATTGAGCAAACCT 60.309 37.037 0.00 0.00 0.00 3.50
5609 6902 6.808704 GGAGAAAAGAATGTATTGAGCAAACC 59.191 38.462 0.00 0.00 0.00 3.27
5610 6903 7.597386 AGGAGAAAAGAATGTATTGAGCAAAC 58.403 34.615 0.00 0.00 0.00 2.93
5611 6904 7.448161 TGAGGAGAAAAGAATGTATTGAGCAAA 59.552 33.333 0.00 0.00 0.00 3.68
5612 6905 6.942005 TGAGGAGAAAAGAATGTATTGAGCAA 59.058 34.615 0.00 0.00 0.00 3.91
5613 6906 6.372659 GTGAGGAGAAAAGAATGTATTGAGCA 59.627 38.462 0.00 0.00 0.00 4.26
5614 6907 6.372659 TGTGAGGAGAAAAGAATGTATTGAGC 59.627 38.462 0.00 0.00 0.00 4.26
5615 6908 7.388776 TGTGTGAGGAGAAAAGAATGTATTGAG 59.611 37.037 0.00 0.00 0.00 3.02
5616 6909 7.173218 GTGTGTGAGGAGAAAAGAATGTATTGA 59.827 37.037 0.00 0.00 0.00 2.57
5617 6910 7.301054 GTGTGTGAGGAGAAAAGAATGTATTG 58.699 38.462 0.00 0.00 0.00 1.90
5618 6911 6.147821 CGTGTGTGAGGAGAAAAGAATGTATT 59.852 38.462 0.00 0.00 0.00 1.89
5619 6912 5.639506 CGTGTGTGAGGAGAAAAGAATGTAT 59.360 40.000 0.00 0.00 0.00 2.29
5620 6913 4.988540 CGTGTGTGAGGAGAAAAGAATGTA 59.011 41.667 0.00 0.00 0.00 2.29
5621 6914 3.809832 CGTGTGTGAGGAGAAAAGAATGT 59.190 43.478 0.00 0.00 0.00 2.71
5622 6915 4.058124 TCGTGTGTGAGGAGAAAAGAATG 58.942 43.478 0.00 0.00 0.00 2.67
5623 6916 4.058817 GTCGTGTGTGAGGAGAAAAGAAT 58.941 43.478 0.00 0.00 0.00 2.40
5624 6917 3.132289 AGTCGTGTGTGAGGAGAAAAGAA 59.868 43.478 0.00 0.00 0.00 2.52
5625 6918 2.693591 AGTCGTGTGTGAGGAGAAAAGA 59.306 45.455 0.00 0.00 0.00 2.52
5626 6919 2.797156 CAGTCGTGTGTGAGGAGAAAAG 59.203 50.000 0.00 0.00 0.00 2.27
5627 6920 2.821546 CAGTCGTGTGTGAGGAGAAAA 58.178 47.619 0.00 0.00 0.00 2.29
5628 6921 1.538204 GCAGTCGTGTGTGAGGAGAAA 60.538 52.381 0.00 0.00 0.00 2.52
5629 6922 0.032130 GCAGTCGTGTGTGAGGAGAA 59.968 55.000 0.00 0.00 0.00 2.87
5630 6923 1.660355 GCAGTCGTGTGTGAGGAGA 59.340 57.895 0.00 0.00 0.00 3.71
5631 6924 1.373497 GGCAGTCGTGTGTGAGGAG 60.373 63.158 0.00 0.00 0.00 3.69
5632 6925 1.832608 AGGCAGTCGTGTGTGAGGA 60.833 57.895 0.00 0.00 0.00 3.71
5633 6926 2.737180 AGGCAGTCGTGTGTGAGG 59.263 61.111 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.