Multiple sequence alignment - TraesCS6A01G183300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G183300 chr6A 100.000 3260 0 0 1 3260 213148030 213151289 0 6021
1 TraesCS6A01G183300 chr6D 95.050 2828 97 12 1 2804 158076170 158073362 0 4407
2 TraesCS6A01G183300 chr6D 91.720 471 30 5 2796 3260 158073037 158072570 0 645
3 TraesCS6A01G183300 chr6B 95.962 2625 74 12 1 2603 288792643 288795257 0 4231
4 TraesCS6A01G183300 chr4D 84.848 1881 214 41 473 2295 115045350 115047217 0 1829
5 TraesCS6A01G183300 chr4A 84.803 1882 213 42 473 2295 462222217 462220350 0 1823
6 TraesCS6A01G183300 chr4B 85.860 1761 189 39 584 2297 175473909 175475656 0 1818


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G183300 chr6A 213148030 213151289 3259 False 6021 6021 100.000 1 3260 1 chr6A.!!$F1 3259
1 TraesCS6A01G183300 chr6D 158072570 158076170 3600 True 2526 4407 93.385 1 3260 2 chr6D.!!$R1 3259
2 TraesCS6A01G183300 chr6B 288792643 288795257 2614 False 4231 4231 95.962 1 2603 1 chr6B.!!$F1 2602
3 TraesCS6A01G183300 chr4D 115045350 115047217 1867 False 1829 1829 84.848 473 2295 1 chr4D.!!$F1 1822
4 TraesCS6A01G183300 chr4A 462220350 462222217 1867 True 1823 1823 84.803 473 2295 1 chr4A.!!$R1 1822
5 TraesCS6A01G183300 chr4B 175473909 175475656 1747 False 1818 1818 85.860 584 2297 1 chr4B.!!$F1 1713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 738 2.221169 TGTGATGTGTTGAGGACTTGC 58.779 47.619 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2539 2619 2.367894 TGAATGCCAGTTTGCAAATGGA 59.632 40.909 29.35 18.41 45.84 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.191995 GTGGTATTCCAGACATTTTAAACTTTG 57.808 33.333 0.00 0.00 45.24 2.77
158 159 7.362834 CCCAACATGCTTGTCATATAGTTGAAA 60.363 37.037 5.61 0.00 38.14 2.69
162 163 8.239314 ACATGCTTGTCATATAGTTGAAAGTTG 58.761 33.333 0.00 0.00 33.19 3.16
169 170 8.236586 TGTCATATAGTTGAAAGTTGCATGTTC 58.763 33.333 0.00 0.00 0.00 3.18
206 207 2.633967 TGTGGGCTTTGCTGAATTTGAT 59.366 40.909 0.00 0.00 0.00 2.57
213 214 7.093377 TGGGCTTTGCTGAATTTGATATTTACT 60.093 33.333 0.00 0.00 0.00 2.24
220 221 6.643770 GCTGAATTTGATATTTACTGCATGGG 59.356 38.462 0.00 0.00 0.00 4.00
221 222 7.658525 TGAATTTGATATTTACTGCATGGGT 57.341 32.000 0.00 0.00 0.00 4.51
414 416 5.187576 TCAACACCATCATCATCAGTGTAGA 59.812 40.000 0.00 0.00 40.63 2.59
431 433 8.758829 TCAGTGTAGAATATGTGATGGTTAAGT 58.241 33.333 0.00 0.00 0.00 2.24
462 464 2.565391 TGGATCAGCGACCTGTAAAGAA 59.435 45.455 0.00 0.00 40.09 2.52
535 549 3.243535 GCTGCCTGCTTTGTAGTTTCTTT 60.244 43.478 0.00 0.00 38.95 2.52
600 629 4.523083 TCATGGCACCCTAATGAGTAAAC 58.477 43.478 0.00 0.00 0.00 2.01
709 738 2.221169 TGTGATGTGTTGAGGACTTGC 58.779 47.619 0.00 0.00 0.00 4.01
789 825 8.207545 GTGGTTATAGAATCTCTGGTTCAGATT 58.792 37.037 0.00 0.00 42.25 2.40
794 832 5.046288 GAATCTCTGGTTCAGATTCCCAT 57.954 43.478 10.19 0.00 45.79 4.00
1191 1264 0.616371 CCCCATACGACCCAGACAAA 59.384 55.000 0.00 0.00 0.00 2.83
1230 1303 3.450096 AGCTTGTCATAGATGAGCTCACA 59.550 43.478 20.97 7.77 37.51 3.58
1293 1366 2.034532 CCAGTGGCAGCATCACCA 59.965 61.111 0.00 0.00 35.87 4.17
1659 1732 1.969809 TTGATGCTGCTGCTAACGCG 61.970 55.000 17.00 3.53 40.48 6.01
1878 1951 2.951229 ACCCAGATTCAGTTTTCGGT 57.049 45.000 0.00 0.00 0.00 4.69
1944 2017 2.820197 GGAAGGTTCTTTCTTCGGCAAT 59.180 45.455 0.00 0.00 40.95 3.56
2120 2193 2.834549 AGTTCTCGGAGATTCACATGGT 59.165 45.455 8.81 0.00 33.89 3.55
2258 2331 0.032952 GGTGTGAAGTGTGCCGACTA 59.967 55.000 0.00 0.00 0.00 2.59
2322 2395 3.132824 ACATCCTGCAAGATCATCGTACA 59.867 43.478 0.00 0.00 34.07 2.90
2358 2431 3.119137 GCCGCCTCTCCAAAATGTTATTT 60.119 43.478 0.00 0.00 0.00 1.40
2418 2492 5.755375 ACATAGTATGCTTTGGTCATTCGAG 59.245 40.000 10.16 0.00 0.00 4.04
2437 2511 3.120546 CGAGGACTGTAATGTGTGCTTTG 60.121 47.826 0.00 0.00 35.07 2.77
2451 2525 7.089770 TGTGTGCTTTGTCTGTTTTGTAATA 57.910 32.000 0.00 0.00 0.00 0.98
2452 2526 7.711846 TGTGTGCTTTGTCTGTTTTGTAATAT 58.288 30.769 0.00 0.00 0.00 1.28
2515 2595 2.503331 TGTCAATGTGGTGTGGATGTC 58.497 47.619 0.00 0.00 0.00 3.06
2516 2596 1.464608 GTCAATGTGGTGTGGATGTCG 59.535 52.381 0.00 0.00 0.00 4.35
2518 2598 0.036732 AATGTGGTGTGGATGTCGCT 59.963 50.000 0.00 0.00 0.00 4.93
2519 2599 0.901827 ATGTGGTGTGGATGTCGCTA 59.098 50.000 0.00 0.00 0.00 4.26
2520 2600 0.901827 TGTGGTGTGGATGTCGCTAT 59.098 50.000 0.00 0.00 0.00 2.97
2521 2601 1.134818 TGTGGTGTGGATGTCGCTATC 60.135 52.381 0.00 0.00 0.00 2.08
2522 2602 1.137086 GTGGTGTGGATGTCGCTATCT 59.863 52.381 0.00 0.00 0.00 1.98
2523 2603 1.136891 TGGTGTGGATGTCGCTATCTG 59.863 52.381 0.00 0.00 0.00 2.90
2532 2612 4.081972 GGATGTCGCTATCTGTATGGTGAT 60.082 45.833 0.00 0.00 35.81 3.06
2539 2619 6.015434 TCGCTATCTGTATGGTGATTGTACAT 60.015 38.462 0.00 0.00 29.16 2.29
2579 2659 1.273327 CAGTTCCTCATTTTGGTGCCC 59.727 52.381 0.00 0.00 0.00 5.36
2609 2689 6.833416 TGGCTTTTGTACTGCCTAATAATGAT 59.167 34.615 16.27 0.00 46.23 2.45
2611 2691 7.013274 GGCTTTTGTACTGCCTAATAATGATGA 59.987 37.037 10.81 0.00 43.05 2.92
2612 2692 8.571336 GCTTTTGTACTGCCTAATAATGATGAT 58.429 33.333 0.00 0.00 0.00 2.45
2616 2696 9.929180 TTGTACTGCCTAATAATGATGATACTC 57.071 33.333 0.00 0.00 0.00 2.59
2617 2697 8.531982 TGTACTGCCTAATAATGATGATACTCC 58.468 37.037 0.00 0.00 0.00 3.85
2618 2698 7.559335 ACTGCCTAATAATGATGATACTCCA 57.441 36.000 0.00 0.00 0.00 3.86
2619 2699 8.155620 ACTGCCTAATAATGATGATACTCCAT 57.844 34.615 0.00 0.00 0.00 3.41
2620 2700 8.609483 ACTGCCTAATAATGATGATACTCCATT 58.391 33.333 0.00 0.00 35.09 3.16
2621 2701 9.458727 CTGCCTAATAATGATGATACTCCATTT 57.541 33.333 0.00 0.00 33.21 2.32
2622 2702 9.234827 TGCCTAATAATGATGATACTCCATTTG 57.765 33.333 0.00 0.00 33.21 2.32
2623 2703 9.236006 GCCTAATAATGATGATACTCCATTTGT 57.764 33.333 0.00 0.00 33.21 2.83
2687 2767 1.134521 TGTGTAGACGGAATGGGCATC 60.135 52.381 0.00 0.00 0.00 3.91
2708 2788 3.888323 TCTGCAGCAAATTGTTTAGGACA 59.112 39.130 9.47 0.00 36.19 4.02
2710 2790 3.243704 TGCAGCAAATTGTTTAGGACACC 60.244 43.478 0.00 0.00 38.18 4.16
2711 2791 3.564511 CAGCAAATTGTTTAGGACACCG 58.435 45.455 0.00 0.00 38.18 4.94
2712 2792 2.556622 AGCAAATTGTTTAGGACACCGG 59.443 45.455 0.00 0.00 38.18 5.28
2721 2803 2.759839 TAGGACACCGGGTATGATCA 57.240 50.000 6.32 0.00 0.00 2.92
2739 2821 3.747854 TCATTTGATTTTGCTGTGCCA 57.252 38.095 0.00 0.00 0.00 4.92
2790 2872 1.087501 CAAAAGGGTCCTTAGCGAGC 58.912 55.000 2.30 0.00 34.84 5.03
2807 3222 0.526524 AGCGTCGCTAAGAGCACATC 60.527 55.000 20.25 0.00 42.58 3.06
2834 3251 4.566987 AGTAAACTAGAAGAGCCAAACCG 58.433 43.478 0.00 0.00 0.00 4.44
2835 3252 2.474410 AACTAGAAGAGCCAAACCGG 57.526 50.000 0.00 0.00 38.11 5.28
2844 3261 0.322546 AGCCAAACCGGTGATCTTCC 60.323 55.000 8.52 0.00 36.97 3.46
2855 3272 4.202357 CCGGTGATCTTCCCAGAATTGATA 60.202 45.833 0.00 0.00 30.76 2.15
2867 3288 9.889128 TTCCCAGAATTGATATTTTTCCATTTC 57.111 29.630 0.00 0.00 0.00 2.17
2920 3341 4.448395 GCTTTAGCAGCTCATATGAGACTG 59.552 45.833 31.63 31.63 46.27 3.51
2921 3342 4.597404 TTAGCAGCTCATATGAGACTGG 57.403 45.455 33.75 24.14 44.74 4.00
2931 3352 0.898320 ATGAGACTGGACACCCTTCG 59.102 55.000 0.00 0.00 0.00 3.79
2933 3354 0.528470 GAGACTGGACACCCTTCGAG 59.472 60.000 0.00 0.00 0.00 4.04
2943 3364 1.137872 CACCCTTCGAGAATGGAGAGG 59.862 57.143 12.92 0.00 31.60 3.69
2978 3399 8.512956 GGAGAACAAGAAAAAGTATTAGGGTTC 58.487 37.037 0.00 0.00 33.11 3.62
3010 3431 9.935241 TCTATATTTAAGATCAATGACCTGCTC 57.065 33.333 0.00 0.00 0.00 4.26
3011 3432 7.992754 ATATTTAAGATCAATGACCTGCTCC 57.007 36.000 0.00 0.00 0.00 4.70
3018 3439 1.753073 CAATGACCTGCTCCCAAATCC 59.247 52.381 0.00 0.00 0.00 3.01
3054 3475 1.273098 GGTACCTCTTGACCCAGGAGA 60.273 57.143 4.06 0.00 39.48 3.71
3107 3528 1.763968 GGATTCCTAGCCCACCAAAC 58.236 55.000 0.00 0.00 0.00 2.93
3119 3540 3.230134 CCCACCAAACTCTTTTCATGGA 58.770 45.455 0.00 0.00 31.91 3.41
3141 3562 4.868268 ACACTAGATCCCAGTTAGCTACA 58.132 43.478 0.00 0.00 0.00 2.74
3149 3570 4.648651 TCCCAGTTAGCTACACTTTTTCC 58.351 43.478 0.00 0.00 0.00 3.13
3150 3571 4.349930 TCCCAGTTAGCTACACTTTTTCCT 59.650 41.667 0.00 0.00 0.00 3.36
3151 3572 5.544948 TCCCAGTTAGCTACACTTTTTCCTA 59.455 40.000 0.00 0.00 0.00 2.94
3152 3573 5.642491 CCCAGTTAGCTACACTTTTTCCTAC 59.358 44.000 0.00 0.00 0.00 3.18
3153 3574 6.228258 CCAGTTAGCTACACTTTTTCCTACA 58.772 40.000 0.00 0.00 0.00 2.74
3154 3575 6.879458 CCAGTTAGCTACACTTTTTCCTACAT 59.121 38.462 0.00 0.00 0.00 2.29
3155 3576 7.148407 CCAGTTAGCTACACTTTTTCCTACATG 60.148 40.741 0.00 0.00 0.00 3.21
3156 3577 7.387948 CAGTTAGCTACACTTTTTCCTACATGT 59.612 37.037 2.69 2.69 0.00 3.21
3157 3578 8.591072 AGTTAGCTACACTTTTTCCTACATGTA 58.409 33.333 5.25 5.25 0.00 2.29
3158 3579 9.211485 GTTAGCTACACTTTTTCCTACATGTAA 57.789 33.333 7.06 0.00 0.00 2.41
3182 3603 2.498078 AGAAAACTCTTCTCCTAGCCCG 59.502 50.000 0.00 0.00 0.00 6.13
3185 3606 0.331954 ACTCTTCTCCTAGCCCGTCA 59.668 55.000 0.00 0.00 0.00 4.35
3194 3615 2.159382 CCTAGCCCGTCACAAATTGTT 58.841 47.619 0.00 0.00 0.00 2.83
3243 3664 2.435372 AGTTTGTGCAAGAGGTTGGA 57.565 45.000 0.00 0.00 33.87 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.684908 TGGCTTTTAGTGATGCTTGCTA 58.315 40.909 0.00 0.00 0.00 3.49
123 124 0.897863 AGCATGTTGGGCGGCTAAAA 60.898 50.000 9.90 4.50 34.25 1.52
129 130 1.597797 ATGACAAGCATGTTGGGCGG 61.598 55.000 0.00 0.00 40.74 6.13
158 159 6.294176 GGAACAAAGTCATAGAACATGCAACT 60.294 38.462 0.00 0.00 0.00 3.16
162 163 4.702131 AGGGAACAAAGTCATAGAACATGC 59.298 41.667 0.00 0.00 0.00 4.06
220 221 1.589803 ACCAACCGTCTACTGCAAAC 58.410 50.000 0.00 0.00 0.00 2.93
221 222 2.102757 TGTACCAACCGTCTACTGCAAA 59.897 45.455 0.00 0.00 0.00 3.68
462 464 3.118531 AGATACCAATCAACTCCCTGCT 58.881 45.455 0.00 0.00 34.28 4.24
600 629 3.525537 AGATGAACGGTATGAACTGCAG 58.474 45.455 13.48 13.48 35.17 4.41
709 738 4.578516 TGTTACACAAAATGACCTCCACAG 59.421 41.667 0.00 0.00 0.00 3.66
736 769 7.673926 ACACCCATATTCTAAACCTTGAACAAT 59.326 33.333 0.00 0.00 0.00 2.71
749 783 8.555896 TTCTATAACCACACACCCATATTCTA 57.444 34.615 0.00 0.00 0.00 2.10
789 825 5.630415 ATAAACTACAGCAAGCTATGGGA 57.370 39.130 0.00 0.00 0.00 4.37
794 832 7.609918 TCATCCAAAATAAACTACAGCAAGCTA 59.390 33.333 0.00 0.00 0.00 3.32
1230 1303 6.064717 AGTATGTTTGAGTTCTGAAAGGCTT 58.935 36.000 0.00 0.00 0.00 4.35
1293 1366 2.880890 AGAAAGCAAGCGTGAATCTTGT 59.119 40.909 2.99 0.00 42.06 3.16
1406 1479 1.604604 GGTTTGCTGCTGTAAGTGGA 58.395 50.000 0.00 0.00 35.30 4.02
1659 1732 7.667043 TGTGTAAACTACATCAGGTTCAATC 57.333 36.000 0.00 0.00 41.34 2.67
2120 2193 7.041167 CCAAGATGATGTTCTTCACAACACTTA 60.041 37.037 0.00 0.00 40.70 2.24
2244 2317 4.243270 ACACTTATTAGTCGGCACACTTC 58.757 43.478 0.00 0.00 30.26 3.01
2258 2331 4.288626 TCTCAGGCAACCCTAACACTTATT 59.711 41.667 0.00 0.00 40.33 1.40
2322 2395 3.071602 AGAGGCGGCATTACATACAAGAT 59.928 43.478 13.08 0.00 0.00 2.40
2358 2431 4.457603 GGTGTTGCTACCACATTTCATACA 59.542 41.667 0.00 0.00 40.54 2.29
2394 2468 5.670485 TCGAATGACCAAAGCATACTATGT 58.330 37.500 0.00 0.00 0.00 2.29
2418 2492 3.815401 AGACAAAGCACACATTACAGTCC 59.185 43.478 0.00 0.00 0.00 3.85
2451 2525 8.768397 TGTAGACCAAAGACAGGATTTACATAT 58.232 33.333 0.00 0.00 0.00 1.78
2452 2526 8.141298 TGTAGACCAAAGACAGGATTTACATA 57.859 34.615 0.00 0.00 0.00 2.29
2515 2595 5.528870 TGTACAATCACCATACAGATAGCG 58.471 41.667 0.00 0.00 0.00 4.26
2516 2596 6.591834 GGATGTACAATCACCATACAGATAGC 59.408 42.308 0.00 0.00 32.58 2.97
2518 2598 7.610580 TGGATGTACAATCACCATACAGATA 57.389 36.000 0.00 0.00 32.58 1.98
2519 2599 6.499106 TGGATGTACAATCACCATACAGAT 57.501 37.500 0.00 0.00 32.58 2.90
2520 2600 5.948742 TGGATGTACAATCACCATACAGA 57.051 39.130 0.00 0.00 32.58 3.41
2521 2601 7.420002 CAAATGGATGTACAATCACCATACAG 58.580 38.462 19.73 12.65 39.93 2.74
2522 2602 6.183360 GCAAATGGATGTACAATCACCATACA 60.183 38.462 19.73 3.41 39.93 2.29
2523 2603 6.183360 TGCAAATGGATGTACAATCACCATAC 60.183 38.462 19.73 14.97 39.93 2.39
2532 2612 4.798924 GCCAGTTTGCAAATGGATGTACAA 60.799 41.667 29.35 0.78 36.09 2.41
2539 2619 2.367894 TGAATGCCAGTTTGCAAATGGA 59.632 40.909 29.35 18.41 45.84 3.41
2592 2672 8.531982 TGGAGTATCATCATTATTAGGCAGTAC 58.468 37.037 0.00 0.00 36.25 2.73
2621 2701 9.787435 AGAACAAACAAAATACTACTCCATACA 57.213 29.630 0.00 0.00 0.00 2.29
2687 2767 3.983344 GTGTCCTAAACAATTTGCTGCAG 59.017 43.478 10.11 10.11 40.31 4.41
2708 2788 5.451798 GCAAAATCAAATGATCATACCCGGT 60.452 40.000 9.04 0.00 32.75 5.28
2710 2790 5.688621 CAGCAAAATCAAATGATCATACCCG 59.311 40.000 9.04 0.00 32.75 5.28
2711 2791 6.477688 CACAGCAAAATCAAATGATCATACCC 59.522 38.462 9.04 0.00 32.75 3.69
2712 2792 6.019318 GCACAGCAAAATCAAATGATCATACC 60.019 38.462 9.04 0.00 32.75 2.73
2790 2872 1.845266 ATGATGTGCTCTTAGCGACG 58.155 50.000 0.00 0.00 46.26 5.12
2807 3222 8.451748 GGTTTGGCTCTTCTAGTTTACTTTATG 58.548 37.037 0.00 0.00 0.00 1.90
2834 3251 7.830099 AAATATCAATTCTGGGAAGATCACC 57.170 36.000 0.00 0.00 0.00 4.02
2835 3252 9.741647 GAAAAATATCAATTCTGGGAAGATCAC 57.258 33.333 0.00 0.00 0.00 3.06
2844 3261 9.669887 TTGGAAATGGAAAAATATCAATTCTGG 57.330 29.630 0.00 0.00 0.00 3.86
2855 3272 7.997803 TCAATGGAAAGTTGGAAATGGAAAAAT 59.002 29.630 0.00 0.00 0.00 1.82
2867 3288 6.736110 AATGGGATATCAATGGAAAGTTGG 57.264 37.500 4.83 0.00 0.00 3.77
2879 3300 3.317455 AGCAGCCAAAATGGGATATCA 57.683 42.857 4.83 0.00 38.19 2.15
2920 3341 0.902531 TCCATTCTCGAAGGGTGTCC 59.097 55.000 9.83 0.00 42.44 4.02
2921 3342 1.825474 TCTCCATTCTCGAAGGGTGTC 59.175 52.381 9.83 0.00 42.44 3.67
2931 3352 4.133078 CCAACTAATGCCTCTCCATTCTC 58.867 47.826 0.00 0.00 36.80 2.87
2933 3354 4.133078 CTCCAACTAATGCCTCTCCATTC 58.867 47.826 0.00 0.00 36.80 2.67
2943 3364 7.203218 ACTTTTTCTTGTTCTCCAACTAATGC 58.797 34.615 0.00 0.00 33.17 3.56
3002 3423 0.915364 AGAGGATTTGGGAGCAGGTC 59.085 55.000 0.00 0.00 0.00 3.85
3004 3425 3.393941 AGATAAGAGGATTTGGGAGCAGG 59.606 47.826 0.00 0.00 0.00 4.85
3010 3431 5.298777 CAGCTTTCAGATAAGAGGATTTGGG 59.701 44.000 0.00 0.00 0.00 4.12
3011 3432 5.298777 CCAGCTTTCAGATAAGAGGATTTGG 59.701 44.000 0.00 0.00 0.00 3.28
3018 3439 5.362430 AGAGGTACCAGCTTTCAGATAAGAG 59.638 44.000 15.94 0.00 0.00 2.85
3054 3475 9.860898 GTCAGAATTTAATTTATGCCTTCTTGT 57.139 29.630 0.00 0.00 0.00 3.16
3077 3498 3.391296 GGCTAGGAATCCCTAACATGTCA 59.609 47.826 0.00 0.00 44.06 3.58
3106 3527 5.104735 GGGATCTAGTGTCCATGAAAAGAGT 60.105 44.000 15.55 0.00 37.49 3.24
3107 3528 5.104776 TGGGATCTAGTGTCCATGAAAAGAG 60.105 44.000 15.55 0.00 37.49 2.85
3119 3540 4.645588 GTGTAGCTAACTGGGATCTAGTGT 59.354 45.833 0.00 0.00 0.00 3.55
3150 3571 9.847224 AGGAGAAGAGTTTTCTTTTTACATGTA 57.153 29.630 0.08 0.08 43.63 2.29
3151 3572 8.753497 AGGAGAAGAGTTTTCTTTTTACATGT 57.247 30.769 2.69 2.69 43.63 3.21
3153 3574 9.004717 GCTAGGAGAAGAGTTTTCTTTTTACAT 57.995 33.333 0.00 0.00 43.63 2.29
3154 3575 7.444487 GGCTAGGAGAAGAGTTTTCTTTTTACA 59.556 37.037 0.00 0.00 43.63 2.41
3155 3576 7.094720 GGGCTAGGAGAAGAGTTTTCTTTTTAC 60.095 40.741 0.00 0.00 43.63 2.01
3156 3577 6.940867 GGGCTAGGAGAAGAGTTTTCTTTTTA 59.059 38.462 0.00 0.00 43.63 1.52
3157 3578 5.770663 GGGCTAGGAGAAGAGTTTTCTTTTT 59.229 40.000 0.00 0.00 43.63 1.94
3158 3579 5.317808 GGGCTAGGAGAAGAGTTTTCTTTT 58.682 41.667 0.00 0.00 43.63 2.27
3162 3583 2.234168 ACGGGCTAGGAGAAGAGTTTTC 59.766 50.000 0.00 0.00 0.00 2.29
3172 3593 2.009774 CAATTTGTGACGGGCTAGGAG 58.990 52.381 0.00 0.00 0.00 3.69
3182 3603 8.931775 GGTAAATTCCCATTAACAATTTGTGAC 58.068 33.333 2.13 0.00 33.02 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.