Multiple sequence alignment - TraesCS6A01G183200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G183200 chr6A 100.000 8435 0 0 1 8435 212809465 212801031 0.000000e+00 15577.0
1 TraesCS6A01G183200 chr6A 89.333 75 6 2 7802 7876 582013721 582013793 9.020000e-15 93.5
2 TraesCS6A01G183200 chr6B 95.428 5993 238 14 1840 7804 279076674 279082658 0.000000e+00 9516.0
3 TraesCS6A01G183200 chr6B 87.390 1364 73 40 385 1660 279075054 279076406 0.000000e+00 1474.0
4 TraesCS6A01G183200 chr6B 81.128 461 43 25 7875 8300 279082659 279083110 6.310000e-86 329.0
5 TraesCS6A01G183200 chr6B 89.189 74 8 0 7803 7876 502301271 502301344 9.020000e-15 93.5
6 TraesCS6A01G183200 chr6B 88.462 78 5 2 7802 7876 583191430 583191506 3.240000e-14 91.6
7 TraesCS6A01G183200 chr6D 95.675 3075 122 9 1840 4908 156563966 156567035 0.000000e+00 4931.0
8 TraesCS6A01G183200 chr6D 96.269 1769 54 8 6269 8031 156570364 156572126 0.000000e+00 2891.0
9 TraesCS6A01G183200 chr6D 96.171 1332 34 6 4956 6283 156567046 156568364 0.000000e+00 2161.0
10 TraesCS6A01G183200 chr6D 93.740 655 16 12 605 1252 156562720 156563356 0.000000e+00 959.0
11 TraesCS6A01G183200 chr6D 82.172 488 52 10 1 474 156561959 156562425 3.690000e-103 387.0
12 TraesCS6A01G183200 chr6D 83.841 328 36 10 1353 1669 156563375 156563696 6.400000e-76 296.0
13 TraesCS6A01G183200 chr6D 90.260 154 9 4 1619 1767 156563684 156563836 6.680000e-46 196.0
14 TraesCS6A01G183200 chr3A 91.892 74 4 2 7805 7876 101905478 101905551 1.500000e-17 102.0
15 TraesCS6A01G183200 chr5B 91.667 72 5 1 7806 7876 244748361 244748290 1.940000e-16 99.0
16 TraesCS6A01G183200 chr5B 90.541 74 5 2 7803 7874 227639899 227639972 6.970000e-16 97.1
17 TraesCS6A01G183200 chr5B 96.970 33 0 1 345 377 248405016 248405047 4.000000e-03 54.7
18 TraesCS6A01G183200 chr7D 91.429 70 5 1 7801 7870 9703729 9703797 2.510000e-15 95.3
19 TraesCS6A01G183200 chr1B 88.608 79 5 2 7802 7880 544785535 544785609 9.020000e-15 93.5
20 TraesCS6A01G183200 chr7A 85.057 87 6 6 8213 8299 113458460 113458539 1.950000e-11 82.4
21 TraesCS6A01G183200 chr7A 100.000 30 0 0 1818 1847 33483216 33483187 1.000000e-03 56.5
22 TraesCS6A01G183200 chr4B 97.059 34 0 1 1818 1850 178078839 178078806 1.000000e-03 56.5
23 TraesCS6A01G183200 chr4B 100.000 30 0 0 1818 1847 295701940 295701911 1.000000e-03 56.5
24 TraesCS6A01G183200 chr3D 100.000 30 0 0 1818 1847 547418333 547418304 1.000000e-03 56.5
25 TraesCS6A01G183200 chr3B 100.000 30 0 0 1818 1847 686352301 686352330 1.000000e-03 56.5
26 TraesCS6A01G183200 chr3B 100.000 30 0 0 345 374 691744115 691744144 1.000000e-03 56.5
27 TraesCS6A01G183200 chr2D 94.444 36 2 0 1812 1847 649302998 649302963 1.000000e-03 56.5
28 TraesCS6A01G183200 chr2B 100.000 30 0 0 1818 1847 489420891 489420862 1.000000e-03 56.5
29 TraesCS6A01G183200 chr1A 100.000 30 0 0 1818 1847 1195742 1195771 1.000000e-03 56.5
30 TraesCS6A01G183200 chr7B 96.970 33 0 1 349 381 26742252 26742221 4.000000e-03 54.7
31 TraesCS6A01G183200 chr4D 96.970 33 0 1 1813 1845 129754882 129754913 4.000000e-03 54.7
32 TraesCS6A01G183200 chr5D 100.000 28 0 0 344 371 68236541 68236568 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G183200 chr6A 212801031 212809465 8434 True 15577.000000 15577 100.000000 1 8435 1 chr6A.!!$R1 8434
1 TraesCS6A01G183200 chr6B 279075054 279083110 8056 False 3773.000000 9516 87.982000 385 8300 3 chr6B.!!$F3 7915
2 TraesCS6A01G183200 chr6D 156561959 156572126 10167 False 1688.714286 4931 91.161143 1 8031 7 chr6D.!!$F1 8030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 552 0.037326 TGACGAGGAACCTGCATGTC 60.037 55.000 0.00 2.26 0.00 3.06 F
600 762 0.820482 ATAAAATACGGCGCCCCACC 60.820 55.000 23.46 0.00 0.00 4.61 F
2416 2798 0.911769 TTCGATTCCCTGAGCCATGT 59.088 50.000 0.00 0.00 0.00 3.21 F
2696 3080 0.882042 AGCACCAACGACTTCAGCTG 60.882 55.000 7.63 7.63 0.00 4.24 F
3477 3863 1.271934 CTAGAGCAGGTCGATCATGGG 59.728 57.143 0.00 0.00 30.15 4.00 F
3484 3870 2.104792 CAGGTCGATCATGGGGTACATT 59.895 50.000 0.00 0.00 37.84 2.71 F
4221 4612 3.482156 ACATCCAGTACATCAGATGGC 57.518 47.619 15.13 7.18 40.33 4.40 F
5111 5517 4.093998 GTCCTGCTTGAATGTGTCTGTATG 59.906 45.833 0.00 0.00 0.00 2.39 F
5435 5841 2.278245 TCATCAGAATCCAACTGGGGT 58.722 47.619 0.00 0.00 37.22 4.95 F
5960 6366 2.615493 GGAAAATCTGACTGGCCGAGAA 60.615 50.000 8.91 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2483 2865 0.463833 GAACTGCCTGAATACCCCGG 60.464 60.000 0.00 0.0 0.00 5.73 R
2566 2948 2.253603 GTCTCAATTTCATTGCCGTGC 58.746 47.619 0.00 0.0 40.05 5.34 R
3500 3886 1.344763 ACATAAGGCAGCGGTCCTATC 59.655 52.381 6.12 0.0 32.65 2.08 R
4403 4794 4.081087 AGCTTACGATCAAAGAAGCCCTAA 60.081 41.667 8.60 0.0 44.32 2.69 R
4810 5201 2.426522 CTCTCCATTTCAACGGAAGCA 58.573 47.619 0.00 0.0 33.82 3.91 R
5172 5578 2.637382 TGTAAGAGCTGTCCAACCATCA 59.363 45.455 0.00 0.0 0.00 3.07 R
5421 5827 2.802719 TGCTTTACCCCAGTTGGATTC 58.197 47.619 0.00 0.0 37.39 2.52 R
6591 9011 1.004320 ACGTTTCATGCCACCGCTA 60.004 52.632 0.00 0.0 35.36 4.26 R
6888 9310 2.090760 AGTTCAACATGCACACACACA 58.909 42.857 0.00 0.0 0.00 3.72 R
7827 10257 1.065551 GTTTTTGACACTGGCGCTCTT 59.934 47.619 7.64 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.816958 AAGCGAGCTGGTGATGCG 60.817 61.111 0.00 0.00 35.28 4.73
36 37 2.751688 GGGGGCACGGTGAACTTA 59.248 61.111 13.29 0.00 0.00 2.24
45 46 0.673644 CGGTGAACTTAGGGCAGTGG 60.674 60.000 0.00 0.00 0.00 4.00
49 50 0.038310 GAACTTAGGGCAGTGGGCTT 59.962 55.000 0.00 0.00 44.01 4.35
57 58 3.663176 CAGTGGGCTTGTGGTGCG 61.663 66.667 0.00 0.00 0.00 5.34
76 77 2.695646 GATGCGACGAAGGCGAAC 59.304 61.111 0.00 0.00 41.64 3.95
87 88 2.307049 GAAGGCGAACACACAAAATCG 58.693 47.619 0.00 0.00 38.28 3.34
96 97 1.531149 CACACAAAATCGAACGGCTCT 59.469 47.619 0.00 0.00 0.00 4.09
109 110 1.519455 GGCTCTCGTACAGCGCATT 60.519 57.895 11.47 0.00 41.07 3.56
110 111 1.633171 GCTCTCGTACAGCGCATTG 59.367 57.895 11.47 1.67 41.07 2.82
195 210 5.766150 TTCGCCATTCTTATAATGGGTTG 57.234 39.130 16.37 0.00 45.61 3.77
208 223 9.271828 CTTATAATGGGTTGATTTTTATTGGCC 57.728 33.333 0.00 0.00 0.00 5.36
287 302 9.975218 AATCCAAATCAAGTATAGTACCACTTT 57.025 29.630 3.12 0.00 32.72 2.66
292 307 8.928270 AATCAAGTATAGTACCACTTTCTTCG 57.072 34.615 3.12 0.00 32.72 3.79
293 308 7.692460 TCAAGTATAGTACCACTTTCTTCGA 57.308 36.000 3.12 0.00 32.72 3.71
294 309 7.533426 TCAAGTATAGTACCACTTTCTTCGAC 58.467 38.462 3.12 0.00 32.72 4.20
295 310 6.448207 AGTATAGTACCACTTTCTTCGACC 57.552 41.667 0.00 0.00 0.00 4.79
307 322 7.295930 CACTTTCTTCGACCCAAAATAAGTAC 58.704 38.462 0.00 0.00 0.00 2.73
308 323 6.146673 ACTTTCTTCGACCCAAAATAAGTACG 59.853 38.462 0.00 0.00 0.00 3.67
310 325 6.266168 TCTTCGACCCAAAATAAGTACGTA 57.734 37.500 0.00 0.00 0.00 3.57
311 326 6.866480 TCTTCGACCCAAAATAAGTACGTAT 58.134 36.000 0.00 0.00 0.00 3.06
312 327 6.974622 TCTTCGACCCAAAATAAGTACGTATC 59.025 38.462 0.00 0.00 0.00 2.24
313 328 6.455360 TCGACCCAAAATAAGTACGTATCT 57.545 37.500 0.00 0.00 0.00 1.98
314 329 6.498304 TCGACCCAAAATAAGTACGTATCTC 58.502 40.000 0.00 0.00 0.00 2.75
315 330 6.095300 TCGACCCAAAATAAGTACGTATCTCA 59.905 38.462 0.00 0.00 0.00 3.27
316 331 6.753279 CGACCCAAAATAAGTACGTATCTCAA 59.247 38.462 0.00 0.00 0.00 3.02
317 332 7.253883 CGACCCAAAATAAGTACGTATCTCAAC 60.254 40.741 0.00 0.00 0.00 3.18
318 333 7.618137 ACCCAAAATAAGTACGTATCTCAACT 58.382 34.615 0.00 0.00 0.00 3.16
319 334 8.098912 ACCCAAAATAAGTACGTATCTCAACTT 58.901 33.333 0.00 1.07 36.26 2.66
320 335 8.943002 CCCAAAATAAGTACGTATCTCAACTTT 58.057 33.333 0.00 0.00 34.23 2.66
328 343 9.837525 AAGTACGTATCTCAACTTTAGTACAAG 57.162 33.333 0.00 0.00 36.59 3.16
375 390 8.842358 AAGTTGAGACATTTATTTTAGGACGA 57.158 30.769 0.00 0.00 0.00 4.20
377 392 9.280174 AGTTGAGACATTTATTTTAGGACGAAA 57.720 29.630 0.00 0.00 0.00 3.46
381 396 9.110502 GAGACATTTATTTTAGGACGAAAGGAT 57.889 33.333 0.00 0.00 0.00 3.24
413 428 6.582677 TTACCAAATCAACATAAGGGTGTG 57.417 37.500 0.00 0.00 31.49 3.82
414 429 4.735369 ACCAAATCAACATAAGGGTGTGA 58.265 39.130 0.00 0.00 31.49 3.58
415 430 5.144100 ACCAAATCAACATAAGGGTGTGAA 58.856 37.500 0.00 0.00 31.49 3.18
416 431 5.600484 ACCAAATCAACATAAGGGTGTGAAA 59.400 36.000 0.00 0.00 31.49 2.69
417 432 6.158598 CCAAATCAACATAAGGGTGTGAAAG 58.841 40.000 0.00 0.00 31.49 2.62
418 433 6.015519 CCAAATCAACATAAGGGTGTGAAAGA 60.016 38.462 0.00 0.00 31.49 2.52
431 452 1.273886 GTGAAAGAGAGACCTTCGCCT 59.726 52.381 0.00 0.00 0.00 5.52
474 497 8.589335 TTAAATGACTACTCATCGGCTAAATC 57.411 34.615 0.00 0.00 35.96 2.17
487 514 8.208224 TCATCGGCTAAATCTAGGTTCAAATAA 58.792 33.333 0.00 0.00 0.00 1.40
514 541 5.477607 TTGTTTAATCCTTCTGACGAGGA 57.522 39.130 0.75 0.75 46.73 3.71
525 552 0.037326 TGACGAGGAACCTGCATGTC 60.037 55.000 0.00 2.26 0.00 3.06
537 564 3.101209 CATGTCCATGGCGGTTCG 58.899 61.111 6.96 0.00 35.24 3.95
556 718 2.097791 TCGGTAATTTATTTGCCACGGC 59.902 45.455 0.00 0.00 39.90 5.68
558 720 2.456010 GTAATTTATTTGCCACGGCCG 58.544 47.619 26.86 26.86 41.09 6.13
576 738 1.167851 CGTGACCATCAGCAAACCAT 58.832 50.000 0.00 0.00 0.00 3.55
592 754 5.005299 GCAAACCATCACAATAAAATACGGC 59.995 40.000 0.00 0.00 0.00 5.68
594 756 3.242936 ACCATCACAATAAAATACGGCGC 60.243 43.478 6.90 0.00 0.00 6.53
599 761 1.026584 AATAAAATACGGCGCCCCAC 58.973 50.000 23.46 0.00 0.00 4.61
600 762 0.820482 ATAAAATACGGCGCCCCACC 60.820 55.000 23.46 0.00 0.00 4.61
601 763 2.890201 TAAAATACGGCGCCCCACCC 62.890 60.000 23.46 0.00 0.00 4.61
616 803 2.352032 ACCCCTGCTGAGCTCGTAC 61.352 63.158 9.64 1.10 0.00 3.67
767 965 1.532437 CAATGCAGACTCAACGCAAGA 59.468 47.619 0.00 0.00 39.48 3.02
777 975 1.612950 TCAACGCAAGATGCCAAATGT 59.387 42.857 0.00 0.00 41.12 2.71
1093 1297 4.525024 CATGCCATCTTTCTCTTCTCCTT 58.475 43.478 0.00 0.00 0.00 3.36
1110 1314 2.824341 TCCTTCTCCGTGGAGTAGTTTC 59.176 50.000 17.88 0.00 42.49 2.78
1191 1395 4.036804 GTGCGCAATTGGCCGTGA 62.037 61.111 14.00 0.00 40.31 4.35
1252 1456 4.978186 ACAGAAATGCATCTTTCGTGATG 58.022 39.130 0.00 0.00 44.72 3.07
1253 1457 4.456911 ACAGAAATGCATCTTTCGTGATGT 59.543 37.500 0.00 0.00 44.02 3.06
1307 1524 4.776743 CGTAGCATCAATCCTAATTGTGC 58.223 43.478 13.17 13.17 43.08 4.57
1308 1525 4.319766 CGTAGCATCAATCCTAATTGTGCC 60.320 45.833 15.51 6.82 43.39 5.01
1309 1526 3.907221 AGCATCAATCCTAATTGTGCCT 58.093 40.909 15.51 6.81 43.39 4.75
1310 1527 5.052693 AGCATCAATCCTAATTGTGCCTA 57.947 39.130 15.51 0.00 43.39 3.93
1311 1528 4.823989 AGCATCAATCCTAATTGTGCCTAC 59.176 41.667 15.51 0.00 43.39 3.18
1312 1529 4.823989 GCATCAATCCTAATTGTGCCTACT 59.176 41.667 11.34 0.00 42.46 2.57
1313 1530 5.997746 GCATCAATCCTAATTGTGCCTACTA 59.002 40.000 11.34 0.00 42.46 1.82
1314 1531 6.656693 GCATCAATCCTAATTGTGCCTACTAT 59.343 38.462 11.34 0.00 42.46 2.12
1315 1532 7.148340 GCATCAATCCTAATTGTGCCTACTATC 60.148 40.741 11.34 0.00 42.46 2.08
1316 1533 7.373617 TCAATCCTAATTGTGCCTACTATCA 57.626 36.000 0.00 0.00 42.46 2.15
1317 1534 7.801104 TCAATCCTAATTGTGCCTACTATCAA 58.199 34.615 0.00 0.00 42.46 2.57
1391 1612 4.606961 TCGTTTTGGTTTCAAGATTCAGC 58.393 39.130 0.00 0.00 33.98 4.26
1431 1652 3.535280 TCTTGCTTTCAAACCCCAAAC 57.465 42.857 0.00 0.00 0.00 2.93
1434 1655 1.484240 TGCTTTCAAACCCCAAACCAG 59.516 47.619 0.00 0.00 0.00 4.00
1449 1670 5.506317 CCCAAACCAGCGATTTAGATGATTC 60.506 44.000 0.00 0.00 0.00 2.52
1468 1689 1.272490 TCAGCCTCTTTCACACGTAGG 59.728 52.381 0.00 0.00 0.00 3.18
1519 1751 4.460263 TCAGAATTTATGCTATGGCCGTT 58.540 39.130 0.77 0.00 37.74 4.44
1540 1780 6.238374 CCGTTGTTTGGAACTATGGATCATAC 60.238 42.308 7.45 0.00 43.25 2.39
1549 1789 6.647067 GGAACTATGGATCATACAACTACAGC 59.353 42.308 0.00 0.00 0.00 4.40
1553 1793 5.521906 TGGATCATACAACTACAGCTCTC 57.478 43.478 0.00 0.00 0.00 3.20
1576 1820 2.425143 TTTCTATGCCAAGAGCCCAG 57.575 50.000 0.00 0.00 42.71 4.45
1592 1836 4.609301 AGCCCAGCAATTAACAAGGATAA 58.391 39.130 0.00 0.00 0.00 1.75
1593 1837 5.211201 AGCCCAGCAATTAACAAGGATAAT 58.789 37.500 0.00 0.00 0.00 1.28
1595 1839 5.985530 GCCCAGCAATTAACAAGGATAATTC 59.014 40.000 0.00 0.00 32.15 2.17
1596 1840 6.406849 GCCCAGCAATTAACAAGGATAATTCA 60.407 38.462 0.00 0.00 32.15 2.57
1601 1845 9.995003 AGCAATTAACAAGGATAATTCAAAACA 57.005 25.926 0.00 0.00 32.15 2.83
1660 1914 5.630661 AGAGTACTGTAGCTTGTACTGTG 57.369 43.478 22.71 3.03 46.23 3.66
1662 1916 3.510360 AGTACTGTAGCTTGTACTGTGGG 59.490 47.826 19.26 0.00 45.05 4.61
1669 1923 4.473477 AGCTTGTACTGTGGGATTCTAC 57.527 45.455 0.00 0.00 0.00 2.59
1670 1924 3.838317 AGCTTGTACTGTGGGATTCTACA 59.162 43.478 0.00 0.00 33.30 2.74
1753 2058 6.311690 GTGTCTAAACTCCTGTAGAATTCTGC 59.688 42.308 18.47 17.11 0.00 4.26
1832 2201 7.737972 TTCACATTATTACATTATGGGACGG 57.262 36.000 0.00 0.00 31.79 4.79
1833 2202 7.068686 TCACATTATTACATTATGGGACGGA 57.931 36.000 0.00 0.00 27.22 4.69
1834 2203 7.158697 TCACATTATTACATTATGGGACGGAG 58.841 38.462 0.00 0.00 27.22 4.63
1836 2205 5.492855 TTATTACATTATGGGACGGAGGG 57.507 43.478 0.00 0.00 0.00 4.30
1837 2206 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1838 2207 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1938 2319 1.445095 CTGCCTCATCCTCTTCCCG 59.555 63.158 0.00 0.00 0.00 5.14
1947 2328 1.045350 TCCTCTTCCCGCTGATCCTG 61.045 60.000 0.00 0.00 0.00 3.86
2218 2600 2.035237 AAAGTTCCTCGTCACCGGCA 62.035 55.000 0.00 0.00 33.95 5.69
2267 2649 4.748600 GCCGTAACTCTGTTTCTGTTACTT 59.251 41.667 11.65 0.00 41.98 2.24
2335 2717 2.702592 TAACATGATCCCGGTTCACC 57.297 50.000 0.00 0.00 0.00 4.02
2400 2782 1.324736 GATTTCGTGCTGGTAGCTTCG 59.675 52.381 0.00 7.34 42.97 3.79
2404 2786 0.924090 CGTGCTGGTAGCTTCGATTC 59.076 55.000 0.00 0.00 42.97 2.52
2416 2798 0.911769 TTCGATTCCCTGAGCCATGT 59.088 50.000 0.00 0.00 0.00 3.21
2420 2802 2.450476 GATTCCCTGAGCCATGTGTTT 58.550 47.619 0.00 0.00 0.00 2.83
2422 2804 1.619654 TCCCTGAGCCATGTGTTTTG 58.380 50.000 0.00 0.00 0.00 2.44
2427 2809 3.256383 CCTGAGCCATGTGTTTTGAATGA 59.744 43.478 0.00 0.00 0.00 2.57
2428 2810 4.081862 CCTGAGCCATGTGTTTTGAATGAT 60.082 41.667 0.00 0.00 0.00 2.45
2429 2811 5.125900 CCTGAGCCATGTGTTTTGAATGATA 59.874 40.000 0.00 0.00 0.00 2.15
2476 2858 1.075542 CGTATCGAAAACTGCAGGCA 58.924 50.000 19.93 0.00 0.00 4.75
2477 2859 1.463056 CGTATCGAAAACTGCAGGCAA 59.537 47.619 19.93 0.00 0.00 4.52
2483 2865 2.476854 CGAAAACTGCAGGCAAGCTATC 60.477 50.000 19.93 3.84 34.99 2.08
2501 2883 0.912487 TCCGGGGTATTCAGGCAGTT 60.912 55.000 0.00 0.00 0.00 3.16
2508 2890 3.493524 GGGTATTCAGGCAGTTCTCTAGC 60.494 52.174 0.00 0.00 0.00 3.42
2566 2948 5.281693 TGACGCTTTCATACTCATTTGTG 57.718 39.130 0.00 0.00 0.00 3.33
2567 2949 4.083581 ACGCTTTCATACTCATTTGTGC 57.916 40.909 0.00 0.00 0.00 4.57
2580 2962 2.522836 TTTGTGCACGGCAATGAAAT 57.477 40.000 13.13 0.00 41.47 2.17
2599 2981 5.472137 TGAAATTGAGACCCGAGGTAAAAAG 59.528 40.000 0.00 0.00 35.25 2.27
2600 2982 4.903045 ATTGAGACCCGAGGTAAAAAGA 57.097 40.909 0.00 0.00 35.25 2.52
2609 2992 5.938710 ACCCGAGGTAAAAAGAATTCTTCTC 59.061 40.000 20.71 18.91 34.34 2.87
2613 2996 6.183360 CGAGGTAAAAAGAATTCTTCTCGTCC 60.183 42.308 29.74 22.79 38.94 4.79
2619 3002 5.740290 AAGAATTCTTCTCGTCCAAGGTA 57.260 39.130 15.11 0.00 39.61 3.08
2633 3016 3.876320 TCCAAGGTAAAACGTTGTACCAC 59.124 43.478 37.31 19.56 41.04 4.16
2656 3039 7.308770 CCACTTACTGAACAATGAACACATGAT 60.309 37.037 0.00 0.00 0.00 2.45
2675 3059 7.119699 CACATGATGGCTTAGTAGAAAAACTCA 59.880 37.037 0.00 0.00 0.00 3.41
2685 3069 3.782889 AGAAAAACTCACAGCACCAAC 57.217 42.857 0.00 0.00 0.00 3.77
2687 3071 1.745232 AAAACTCACAGCACCAACGA 58.255 45.000 0.00 0.00 0.00 3.85
2696 3080 0.882042 AGCACCAACGACTTCAGCTG 60.882 55.000 7.63 7.63 0.00 4.24
2701 3085 1.528586 CCAACGACTTCAGCTGTTCTG 59.471 52.381 14.67 5.14 44.21 3.02
2714 3098 7.054491 TCAGCTGTTCTGATATTAGCATACA 57.946 36.000 14.67 0.00 46.34 2.29
2717 3101 9.428097 CAGCTGTTCTGATATTAGCATACATAA 57.572 33.333 5.25 0.00 45.72 1.90
2718 3102 9.429359 AGCTGTTCTGATATTAGCATACATAAC 57.571 33.333 0.00 0.00 36.87 1.89
2719 3103 9.429359 GCTGTTCTGATATTAGCATACATAACT 57.571 33.333 0.00 0.00 34.64 2.24
2739 3125 6.620877 AACTGGATTATTAGTGTCCTGTCA 57.379 37.500 4.07 0.00 41.49 3.58
2763 3149 2.740580 GCATCTGGCAATTTCACCCATG 60.741 50.000 0.00 0.00 43.97 3.66
2766 3152 1.619827 CTGGCAATTTCACCCATGTGT 59.380 47.619 0.00 0.00 43.26 3.72
2784 3170 7.283127 CCCATGTGTAGTGCATTCTAGTTATTT 59.717 37.037 0.00 0.00 0.00 1.40
2906 3292 2.571212 ACACGAACAGGAGCAATGAAA 58.429 42.857 0.00 0.00 0.00 2.69
2908 3294 3.189287 ACACGAACAGGAGCAATGAAATC 59.811 43.478 0.00 0.00 0.00 2.17
2918 3304 1.796617 GCAATGAAATCGCTGCAGGTC 60.797 52.381 17.12 0.00 34.87 3.85
2920 3306 1.376543 ATGAAATCGCTGCAGGTCAG 58.623 50.000 17.12 0.00 45.62 3.51
2923 3309 1.806542 GAAATCGCTGCAGGTCAGAAA 59.193 47.619 17.12 0.00 45.72 2.52
2981 3367 5.291178 TCTACTCTACTAGTCGCTGACATC 58.709 45.833 0.00 0.00 39.80 3.06
3080 3466 4.965762 CGACGTACGAGTTTGATGCTTATA 59.034 41.667 24.41 0.00 45.77 0.98
3137 3523 5.186215 GGAGGGAATATACCTAGACTGCTTC 59.814 48.000 0.00 0.00 38.79 3.86
3165 3551 4.869297 TCCACGGTTAACAAATATGGTACG 59.131 41.667 8.10 0.16 0.00 3.67
3251 3637 7.148755 GCTTAATTGTGTATTGCAACCTTTCAG 60.149 37.037 0.00 0.00 0.00 3.02
3335 3721 2.850647 GACTCGGTTCACGTACTATTGC 59.149 50.000 0.00 0.00 44.69 3.56
3477 3863 1.271934 CTAGAGCAGGTCGATCATGGG 59.728 57.143 0.00 0.00 30.15 4.00
3484 3870 2.104792 CAGGTCGATCATGGGGTACATT 59.895 50.000 0.00 0.00 37.84 2.71
3500 3886 6.202954 GGGGTACATTCGATCTAACTTCAATG 59.797 42.308 0.00 0.00 0.00 2.82
3628 4014 5.811399 TGTTTTCTGACAGTTGTACAAGG 57.189 39.130 8.98 7.09 0.00 3.61
3643 4029 9.723601 AGTTGTACAAGGAAATAAATACGGTAA 57.276 29.630 8.98 0.00 0.00 2.85
3953 4339 7.820044 GTATTGAACCAAGTTTTGTTGTTCA 57.180 32.000 8.54 8.54 31.48 3.18
3958 4344 5.923733 ACCAAGTTTTGTTGTTCATGGTA 57.076 34.783 0.00 0.00 38.11 3.25
3981 4367 7.702348 GGTAAGGTTGATCAATGTGCTAATTTC 59.298 37.037 12.12 0.00 0.00 2.17
4086 4472 8.041323 ACATTCTTTCGACTGAATAGTTATGGT 58.959 33.333 10.54 2.76 37.25 3.55
4105 4491 4.444536 TGGTGTACAGTTTGTGTTCTACC 58.555 43.478 0.00 0.00 40.94 3.18
4221 4612 3.482156 ACATCCAGTACATCAGATGGC 57.518 47.619 15.13 7.18 40.33 4.40
4373 4764 8.739039 AGTATGCATGCAAGTTTATCTTTGTAA 58.261 29.630 26.68 0.00 33.63 2.41
4419 4810 9.688592 CATTATGATTTTAGGGCTTCTTTGATC 57.311 33.333 0.00 0.00 0.00 2.92
4810 5201 5.380043 ACCACACAGATTCAAGAGTTCAAT 58.620 37.500 0.00 0.00 0.00 2.57
5003 5408 7.929785 TCTCCTTTTCTACATCGTAACAAACTT 59.070 33.333 0.00 0.00 0.00 2.66
5111 5517 4.093998 GTCCTGCTTGAATGTGTCTGTATG 59.906 45.833 0.00 0.00 0.00 2.39
5172 5578 6.317391 GCTTTGCATATTTCCTTACAGAGAGT 59.683 38.462 0.00 0.00 0.00 3.24
5204 5610 5.335191 GGACAGCTCTTACAAGAACCAAATG 60.335 44.000 0.00 0.00 34.03 2.32
5372 5778 4.478206 ACCACTCTCATCAACATGGTAG 57.522 45.455 0.00 0.00 38.67 3.18
5426 5832 3.133141 GGGCTACCTTCATCAGAATCC 57.867 52.381 0.00 0.00 32.31 3.01
5429 5835 3.879892 GGCTACCTTCATCAGAATCCAAC 59.120 47.826 0.00 0.00 32.31 3.77
5435 5841 2.278245 TCATCAGAATCCAACTGGGGT 58.722 47.619 0.00 0.00 37.22 4.95
5529 5935 2.952978 AGTGAAGCGGATGGAGTAGTAG 59.047 50.000 0.00 0.00 0.00 2.57
5670 6076 4.018506 TGAGGAATTTGCTGTCTATCCCAA 60.019 41.667 0.00 0.00 0.00 4.12
5848 6254 6.826231 TCTCTCTCACTCAGATTATTTCGAGT 59.174 38.462 0.00 0.00 38.14 4.18
5852 6258 9.574458 CTCTCACTCAGATTATTTCGAGTTTTA 57.426 33.333 0.00 0.00 36.64 1.52
5905 6311 7.928908 TTGAACTTGTGATTGATTGCTTTAC 57.071 32.000 0.00 0.00 0.00 2.01
5960 6366 2.615493 GGAAAATCTGACTGGCCGAGAA 60.615 50.000 8.91 0.00 0.00 2.87
6028 6434 8.630054 AAATTAGCTCAGGTAATGTGTTACAA 57.370 30.769 9.90 0.00 41.59 2.41
6081 6487 6.485984 GCATGGATATGATGAACTTGACTTCT 59.514 38.462 0.00 0.00 36.36 2.85
6591 9011 8.403236 GTTCCCGATAAGCTTGTACAAAAATAT 58.597 33.333 9.86 7.87 0.00 1.28
6624 9044 4.447069 CGTCGTCTCAGCGTCGCT 62.447 66.667 15.47 15.47 40.77 4.93
6888 9310 3.921119 TCAGTTCATCGCTGCATTTTT 57.079 38.095 0.00 0.00 34.21 1.94
6906 9328 3.582714 TTTGTGTGTGTGCATGTTGAA 57.417 38.095 0.00 0.00 0.00 2.69
6946 9368 6.153680 ACCAAAGTTCAAAACATACTTCCACA 59.846 34.615 0.00 0.00 31.26 4.17
7038 9460 2.224113 CCTTGCAGTGCATTGGAAACTT 60.224 45.455 24.94 0.00 38.76 2.66
7179 9608 0.885879 TGCTGACGATAACGACCACT 59.114 50.000 0.00 0.00 42.66 4.00
7233 9662 0.033503 TAGTCCAGTCCATCTCGCCA 60.034 55.000 0.00 0.00 0.00 5.69
7446 9875 2.101415 TGTCACCTGATCGGCAAGATAG 59.899 50.000 0.00 0.00 40.26 2.08
7498 9927 2.330440 TCACAGTTGCAGCTTCAGAA 57.670 45.000 0.00 0.00 0.00 3.02
7629 10059 6.215431 TGAAGAACTCAGGGATAAGGAAATGA 59.785 38.462 0.00 0.00 0.00 2.57
7809 10239 7.585210 GGTTTCGTGAATGTTTGTAAAGTACTC 59.415 37.037 0.00 0.00 0.00 2.59
7814 10244 6.935208 GTGAATGTTTGTAAAGTACTCCCTCT 59.065 38.462 0.00 0.00 0.00 3.69
7827 10257 7.358255 AGTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
7831 10261 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
7841 10271 4.627467 CCATAATATAAGAGCGCCAGTGTC 59.373 45.833 2.29 0.00 0.00 3.67
7847 10277 0.663153 AGAGCGCCAGTGTCAAAAAC 59.337 50.000 2.29 0.00 0.00 2.43
7853 10283 1.065551 GCCAGTGTCAAAAACGCTCTT 59.934 47.619 0.00 0.00 45.69 2.85
7857 10287 5.671329 GCCAGTGTCAAAAACGCTCTTATAG 60.671 44.000 0.00 0.00 45.69 1.31
7861 10291 8.110612 CAGTGTCAAAAACGCTCTTATAGTATG 58.889 37.037 0.00 0.00 45.69 2.39
7886 10316 5.057843 ACGGAGGGAGTATATGTGAGTTA 57.942 43.478 0.00 0.00 0.00 2.24
8090 10552 9.736023 ACACTTCTTTTCAGATGTTTCATTTAC 57.264 29.630 0.00 0.00 35.67 2.01
8181 10643 4.705337 TTTTTGTGTGTGGTTGGAGTAC 57.295 40.909 0.00 0.00 0.00 2.73
8182 10644 3.351794 TTTGTGTGTGGTTGGAGTACA 57.648 42.857 0.00 0.00 0.00 2.90
8205 10667 1.515081 CCCTTTGTGCAAAGCCATTG 58.485 50.000 16.70 5.38 44.76 2.82
8212 10674 4.659480 CAAAGCCATTGCAGCGTT 57.341 50.000 0.00 0.00 41.13 4.84
8215 10677 1.598601 CAAAGCCATTGCAGCGTTTTT 59.401 42.857 0.00 0.00 41.13 1.94
8241 10703 3.446310 TGAAATATCCAGCGTTCGCTA 57.554 42.857 18.99 5.78 39.76 4.26
8261 10723 6.367149 TCGCTAGCTTATCATTGATTTAGCAG 59.633 38.462 23.88 20.12 33.76 4.24
8279 10741 4.970662 GCAGAGAGCATATGGAAAACAA 57.029 40.909 4.56 0.00 44.79 2.83
8280 10742 5.511234 GCAGAGAGCATATGGAAAACAAT 57.489 39.130 4.56 0.00 44.79 2.71
8285 10747 5.883661 AGAGCATATGGAAAACAATGTTCG 58.116 37.500 4.56 0.00 35.33 3.95
8309 10771 5.723492 TCAAGTGATCAATGTATGCGAAG 57.277 39.130 0.00 0.00 0.00 3.79
8310 10772 5.418676 TCAAGTGATCAATGTATGCGAAGA 58.581 37.500 0.00 0.00 0.00 2.87
8311 10773 5.521372 TCAAGTGATCAATGTATGCGAAGAG 59.479 40.000 0.00 0.00 0.00 2.85
8312 10774 5.268118 AGTGATCAATGTATGCGAAGAGA 57.732 39.130 0.00 0.00 0.00 3.10
8313 10775 5.664457 AGTGATCAATGTATGCGAAGAGAA 58.336 37.500 0.00 0.00 0.00 2.87
8314 10776 6.108687 AGTGATCAATGTATGCGAAGAGAAA 58.891 36.000 0.00 0.00 0.00 2.52
8315 10777 6.595326 AGTGATCAATGTATGCGAAGAGAAAA 59.405 34.615 0.00 0.00 0.00 2.29
8316 10778 7.281774 AGTGATCAATGTATGCGAAGAGAAAAT 59.718 33.333 0.00 0.00 0.00 1.82
8317 10779 7.912250 GTGATCAATGTATGCGAAGAGAAAATT 59.088 33.333 0.00 0.00 0.00 1.82
8318 10780 9.108284 TGATCAATGTATGCGAAGAGAAAATTA 57.892 29.630 0.00 0.00 0.00 1.40
8319 10781 9.374960 GATCAATGTATGCGAAGAGAAAATTAC 57.625 33.333 0.00 0.00 0.00 1.89
8320 10782 8.262715 TCAATGTATGCGAAGAGAAAATTACA 57.737 30.769 0.00 0.00 0.00 2.41
8321 10783 8.390354 TCAATGTATGCGAAGAGAAAATTACAG 58.610 33.333 0.00 0.00 0.00 2.74
8322 10784 6.662414 TGTATGCGAAGAGAAAATTACAGG 57.338 37.500 0.00 0.00 0.00 4.00
8323 10785 5.584649 TGTATGCGAAGAGAAAATTACAGGG 59.415 40.000 0.00 0.00 0.00 4.45
8324 10786 3.343617 TGCGAAGAGAAAATTACAGGGG 58.656 45.455 0.00 0.00 0.00 4.79
8325 10787 2.683362 GCGAAGAGAAAATTACAGGGGG 59.317 50.000 0.00 0.00 0.00 5.40
8326 10788 3.872630 GCGAAGAGAAAATTACAGGGGGT 60.873 47.826 0.00 0.00 0.00 4.95
8327 10789 3.939592 CGAAGAGAAAATTACAGGGGGTC 59.060 47.826 0.00 0.00 0.00 4.46
8328 10790 4.564821 CGAAGAGAAAATTACAGGGGGTCA 60.565 45.833 0.00 0.00 0.00 4.02
8329 10791 4.576330 AGAGAAAATTACAGGGGGTCAG 57.424 45.455 0.00 0.00 0.00 3.51
8330 10792 3.267031 AGAGAAAATTACAGGGGGTCAGG 59.733 47.826 0.00 0.00 0.00 3.86
8331 10793 2.993863 AGAAAATTACAGGGGGTCAGGT 59.006 45.455 0.00 0.00 0.00 4.00
8332 10794 4.180723 AGAAAATTACAGGGGGTCAGGTA 58.819 43.478 0.00 0.00 0.00 3.08
8333 10795 4.227527 AGAAAATTACAGGGGGTCAGGTAG 59.772 45.833 0.00 0.00 0.00 3.18
8334 10796 1.508256 ATTACAGGGGGTCAGGTAGC 58.492 55.000 0.00 0.00 0.00 3.58
8335 10797 0.117541 TTACAGGGGGTCAGGTAGCA 59.882 55.000 0.00 0.00 0.00 3.49
8336 10798 0.325296 TACAGGGGGTCAGGTAGCAG 60.325 60.000 0.00 0.00 0.00 4.24
8337 10799 2.041265 AGGGGGTCAGGTAGCAGG 59.959 66.667 0.00 0.00 0.00 4.85
8338 10800 2.040606 GGGGGTCAGGTAGCAGGA 59.959 66.667 0.00 0.00 0.00 3.86
8339 10801 1.384643 GGGGGTCAGGTAGCAGGAT 60.385 63.158 0.00 0.00 0.00 3.24
8340 10802 0.105142 GGGGGTCAGGTAGCAGGATA 60.105 60.000 0.00 0.00 0.00 2.59
8341 10803 1.694693 GGGGGTCAGGTAGCAGGATAA 60.695 57.143 0.00 0.00 0.00 1.75
8342 10804 1.416772 GGGGTCAGGTAGCAGGATAAC 59.583 57.143 0.00 0.00 0.00 1.89
8343 10805 2.399580 GGGTCAGGTAGCAGGATAACT 58.600 52.381 0.00 0.00 0.00 2.24
8344 10806 2.772515 GGGTCAGGTAGCAGGATAACTT 59.227 50.000 0.00 0.00 0.00 2.66
8345 10807 3.200165 GGGTCAGGTAGCAGGATAACTTT 59.800 47.826 0.00 0.00 0.00 2.66
8346 10808 4.324331 GGGTCAGGTAGCAGGATAACTTTT 60.324 45.833 0.00 0.00 0.00 2.27
8347 10809 4.876679 GGTCAGGTAGCAGGATAACTTTTC 59.123 45.833 0.00 0.00 0.00 2.29
8348 10810 4.876679 GTCAGGTAGCAGGATAACTTTTCC 59.123 45.833 0.00 0.00 0.00 3.13
8349 10811 4.783227 TCAGGTAGCAGGATAACTTTTCCT 59.217 41.667 0.00 0.00 44.60 3.36
8358 10820 5.501156 AGGATAACTTTTCCTGTCATGTCC 58.499 41.667 0.27 0.00 42.11 4.02
8359 10821 4.640647 GGATAACTTTTCCTGTCATGTCCC 59.359 45.833 0.00 0.00 0.00 4.46
8360 10822 2.586648 ACTTTTCCTGTCATGTCCCC 57.413 50.000 0.00 0.00 0.00 4.81
8361 10823 1.780309 ACTTTTCCTGTCATGTCCCCA 59.220 47.619 0.00 0.00 0.00 4.96
8362 10824 2.176798 ACTTTTCCTGTCATGTCCCCAA 59.823 45.455 0.00 0.00 0.00 4.12
8363 10825 3.181418 ACTTTTCCTGTCATGTCCCCAAT 60.181 43.478 0.00 0.00 0.00 3.16
8364 10826 2.512692 TTCCTGTCATGTCCCCAATG 57.487 50.000 0.00 0.00 0.00 2.82
8365 10827 0.625316 TCCTGTCATGTCCCCAATGG 59.375 55.000 0.00 0.00 0.00 3.16
8376 10838 4.469883 CCAATGGGGCTCTCGATG 57.530 61.111 0.00 0.00 0.00 3.84
8377 10839 1.528824 CCAATGGGGCTCTCGATGT 59.471 57.895 0.00 0.00 0.00 3.06
8378 10840 0.816825 CCAATGGGGCTCTCGATGTG 60.817 60.000 0.00 0.00 0.00 3.21
8379 10841 1.153086 AATGGGGCTCTCGATGTGC 60.153 57.895 0.00 0.00 34.70 4.57
8380 10842 1.630126 AATGGGGCTCTCGATGTGCT 61.630 55.000 0.00 0.00 35.67 4.40
8381 10843 1.630126 ATGGGGCTCTCGATGTGCTT 61.630 55.000 0.00 0.00 35.67 3.91
8382 10844 1.817099 GGGGCTCTCGATGTGCTTG 60.817 63.158 0.00 0.00 35.67 4.01
8383 10845 1.817099 GGGCTCTCGATGTGCTTGG 60.817 63.158 0.00 0.00 35.67 3.61
8384 10846 2.467826 GGCTCTCGATGTGCTTGGC 61.468 63.158 0.00 0.00 35.67 4.52
8385 10847 1.449246 GCTCTCGATGTGCTTGGCT 60.449 57.895 0.00 0.00 32.89 4.75
8386 10848 1.427592 GCTCTCGATGTGCTTGGCTC 61.428 60.000 0.00 0.00 32.89 4.70
8387 10849 0.175302 CTCTCGATGTGCTTGGCTCT 59.825 55.000 0.00 0.00 0.00 4.09
8388 10850 1.406898 CTCTCGATGTGCTTGGCTCTA 59.593 52.381 0.00 0.00 0.00 2.43
8389 10851 1.406898 TCTCGATGTGCTTGGCTCTAG 59.593 52.381 0.00 0.00 0.00 2.43
8390 10852 0.179100 TCGATGTGCTTGGCTCTAGC 60.179 55.000 0.00 0.00 39.10 3.42
8391 10853 0.179089 CGATGTGCTTGGCTCTAGCT 60.179 55.000 1.39 0.00 41.70 3.32
8392 10854 1.067669 CGATGTGCTTGGCTCTAGCTA 59.932 52.381 1.39 0.00 41.70 3.32
8393 10855 2.753296 GATGTGCTTGGCTCTAGCTAG 58.247 52.381 15.01 15.01 41.70 3.42
8394 10856 0.826715 TGTGCTTGGCTCTAGCTAGG 59.173 55.000 20.58 12.16 41.70 3.02
8395 10857 4.769047 GCTTGGCTCTAGCTAGGC 57.231 61.111 20.58 20.23 45.87 3.93
8396 10858 1.300542 GCTTGGCTCTAGCTAGGCG 60.301 63.158 20.58 12.81 43.65 5.52
8397 10859 1.300542 CTTGGCTCTAGCTAGGCGC 60.301 63.158 20.58 20.70 44.67 6.53
8398 10860 2.707529 CTTGGCTCTAGCTAGGCGCC 62.708 65.000 31.48 31.48 44.67 6.53
8399 10861 3.227276 GGCTCTAGCTAGGCGCCA 61.227 66.667 32.37 14.00 41.70 5.69
8400 10862 2.578714 GGCTCTAGCTAGGCGCCAT 61.579 63.158 32.37 16.46 41.70 4.40
8401 10863 1.369321 GCTCTAGCTAGGCGCCATT 59.631 57.895 31.54 12.06 40.39 3.16
8402 10864 0.948141 GCTCTAGCTAGGCGCCATTG 60.948 60.000 31.54 18.71 40.39 2.82
8403 10865 0.948141 CTCTAGCTAGGCGCCATTGC 60.948 60.000 31.54 27.21 40.39 3.56
8404 10866 1.070445 CTAGCTAGGCGCCATTGCT 59.930 57.895 32.14 32.14 40.39 3.91
8405 10867 0.948141 CTAGCTAGGCGCCATTGCTC 60.948 60.000 33.03 15.97 40.39 4.26
8406 10868 2.383245 TAGCTAGGCGCCATTGCTCC 62.383 60.000 33.03 14.50 42.94 4.70
8407 10869 2.190313 CTAGGCGCCATTGCTCCA 59.810 61.111 31.54 1.47 45.13 3.86
8408 10870 1.228063 CTAGGCGCCATTGCTCCAT 60.228 57.895 31.54 6.76 45.13 3.41
8409 10871 1.512996 CTAGGCGCCATTGCTCCATG 61.513 60.000 31.54 1.56 45.13 3.66
8410 10872 4.580551 GGCGCCATTGCTCCATGC 62.581 66.667 24.80 0.00 42.16 4.06
8411 10873 3.524606 GCGCCATTGCTCCATGCT 61.525 61.111 0.00 0.00 43.37 3.79
8412 10874 2.719979 CGCCATTGCTCCATGCTC 59.280 61.111 0.00 0.00 43.37 4.26
8413 10875 2.842256 CGCCATTGCTCCATGCTCC 61.842 63.158 0.00 0.00 43.37 4.70
8414 10876 1.455217 GCCATTGCTCCATGCTCCT 60.455 57.895 0.00 0.00 43.37 3.69
8415 10877 1.041447 GCCATTGCTCCATGCTCCTT 61.041 55.000 0.00 0.00 43.37 3.36
8416 10878 1.030457 CCATTGCTCCATGCTCCTTC 58.970 55.000 0.00 0.00 43.37 3.46
8417 10879 1.409802 CCATTGCTCCATGCTCCTTCT 60.410 52.381 0.00 0.00 43.37 2.85
8418 10880 1.676529 CATTGCTCCATGCTCCTTCTG 59.323 52.381 0.00 0.00 43.37 3.02
8419 10881 0.986527 TTGCTCCATGCTCCTTCTGA 59.013 50.000 0.00 0.00 43.37 3.27
8420 10882 1.210538 TGCTCCATGCTCCTTCTGAT 58.789 50.000 0.00 0.00 43.37 2.90
8421 10883 2.401568 TGCTCCATGCTCCTTCTGATA 58.598 47.619 0.00 0.00 43.37 2.15
8422 10884 2.367894 TGCTCCATGCTCCTTCTGATAG 59.632 50.000 0.00 0.00 43.37 2.08
8423 10885 2.871236 GCTCCATGCTCCTTCTGATAGC 60.871 54.545 0.00 0.00 38.95 2.97
8424 10886 2.633967 CTCCATGCTCCTTCTGATAGCT 59.366 50.000 0.00 0.00 37.16 3.32
8425 10887 2.632028 TCCATGCTCCTTCTGATAGCTC 59.368 50.000 0.00 0.00 37.16 4.09
8426 10888 2.289569 CCATGCTCCTTCTGATAGCTCC 60.290 54.545 0.00 0.00 37.16 4.70
8427 10889 1.035923 TGCTCCTTCTGATAGCTCCG 58.964 55.000 0.00 0.00 37.16 4.63
8428 10890 1.323412 GCTCCTTCTGATAGCTCCGA 58.677 55.000 0.00 0.00 33.40 4.55
8429 10891 1.892474 GCTCCTTCTGATAGCTCCGAT 59.108 52.381 0.00 0.00 33.40 4.18
8430 10892 3.085533 GCTCCTTCTGATAGCTCCGATA 58.914 50.000 0.00 0.00 33.40 2.92
8431 10893 3.508012 GCTCCTTCTGATAGCTCCGATAA 59.492 47.826 0.00 0.00 33.40 1.75
8432 10894 4.617298 GCTCCTTCTGATAGCTCCGATAAC 60.617 50.000 0.00 0.00 33.40 1.89
8433 10895 4.470602 TCCTTCTGATAGCTCCGATAACA 58.529 43.478 0.00 0.00 0.00 2.41
8434 10896 5.080337 TCCTTCTGATAGCTCCGATAACAT 58.920 41.667 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.376812 CTAAGTTCACCGTGCCCCC 60.377 63.158 0.00 0.00 0.00 5.40
25 26 0.034896 CACTGCCCTAAGTTCACCGT 59.965 55.000 0.00 0.00 0.00 4.83
32 33 1.380302 CAAGCCCACTGCCCTAAGT 59.620 57.895 0.00 0.00 42.71 2.24
33 34 0.962356 CACAAGCCCACTGCCCTAAG 60.962 60.000 0.00 0.00 42.71 2.18
36 37 4.290622 CCACAAGCCCACTGCCCT 62.291 66.667 0.00 0.00 42.71 5.19
45 46 4.465512 CATCGCGCACCACAAGCC 62.466 66.667 8.75 0.00 0.00 4.35
66 67 2.307049 GATTTTGTGTGTTCGCCTTCG 58.693 47.619 0.00 0.00 0.00 3.79
68 69 1.944024 TCGATTTTGTGTGTTCGCCTT 59.056 42.857 0.00 0.00 0.00 4.35
74 75 1.673920 AGCCGTTCGATTTTGTGTGTT 59.326 42.857 0.00 0.00 0.00 3.32
76 77 1.531149 AGAGCCGTTCGATTTTGTGTG 59.469 47.619 0.00 0.00 0.00 3.82
109 110 4.624364 CCACCAGTCAGCCGCACA 62.624 66.667 0.00 0.00 0.00 4.57
191 206 4.991687 TGAAACGGCCAATAAAAATCAACC 59.008 37.500 2.24 0.00 0.00 3.77
202 217 9.959721 AATAGAATAGTATATGAAACGGCCAAT 57.040 29.630 2.24 0.00 0.00 3.16
266 281 9.367444 CGAAGAAAGTGGTACTATACTTGATTT 57.633 33.333 10.09 6.63 37.23 2.17
273 288 5.126061 TGGGTCGAAGAAAGTGGTACTATAC 59.874 44.000 0.00 0.00 39.69 1.47
276 291 3.499338 TGGGTCGAAGAAAGTGGTACTA 58.501 45.455 0.00 0.00 39.69 1.82
281 296 5.240844 ACTTATTTTGGGTCGAAGAAAGTGG 59.759 40.000 0.00 0.00 39.69 4.00
286 301 5.540911 ACGTACTTATTTTGGGTCGAAGAA 58.459 37.500 0.00 0.00 39.69 2.52
287 302 5.138125 ACGTACTTATTTTGGGTCGAAGA 57.862 39.130 0.00 0.00 0.00 2.87
292 307 7.763071 AGTTGAGATACGTACTTATTTTGGGTC 59.237 37.037 0.00 0.00 0.00 4.46
293 308 7.618137 AGTTGAGATACGTACTTATTTTGGGT 58.382 34.615 0.00 0.00 0.00 4.51
294 309 8.488651 AAGTTGAGATACGTACTTATTTTGGG 57.511 34.615 0.00 0.00 0.00 4.12
307 322 9.616634 TTGTACTTGTACTAAAGTTGAGATACG 57.383 33.333 11.53 0.00 40.77 3.06
311 326 9.880157 AAAGTTGTACTTGTACTAAAGTTGAGA 57.120 29.630 11.53 0.00 38.66 3.27
364 379 7.996098 TCAAGAAATCCTTTCGTCCTAAAAT 57.004 32.000 0.00 0.00 44.29 1.82
365 380 7.996098 ATCAAGAAATCCTTTCGTCCTAAAA 57.004 32.000 0.00 0.00 44.29 1.52
366 381 7.996098 AATCAAGAAATCCTTTCGTCCTAAA 57.004 32.000 0.00 0.00 44.29 1.85
367 382 7.996098 AAATCAAGAAATCCTTTCGTCCTAA 57.004 32.000 0.00 0.00 44.29 2.69
368 383 7.551617 GGTAAATCAAGAAATCCTTTCGTCCTA 59.448 37.037 0.00 0.00 44.29 2.94
369 384 6.374613 GGTAAATCAAGAAATCCTTTCGTCCT 59.625 38.462 0.00 0.00 44.29 3.85
370 385 6.150474 TGGTAAATCAAGAAATCCTTTCGTCC 59.850 38.462 0.00 0.00 44.29 4.79
371 386 7.141100 TGGTAAATCAAGAAATCCTTTCGTC 57.859 36.000 0.00 0.00 44.29 4.20
392 407 4.735369 TCACACCCTTATGTTGATTTGGT 58.265 39.130 0.00 0.00 0.00 3.67
408 423 2.678324 CGAAGGTCTCTCTTTCACACC 58.322 52.381 0.00 0.00 32.65 4.16
411 426 1.273886 AGGCGAAGGTCTCTCTTTCAC 59.726 52.381 0.00 0.00 32.65 3.18
413 428 1.404851 CCAGGCGAAGGTCTCTCTTTC 60.405 57.143 0.00 0.00 0.00 2.62
414 429 0.610687 CCAGGCGAAGGTCTCTCTTT 59.389 55.000 0.00 0.00 0.00 2.52
415 430 0.251832 TCCAGGCGAAGGTCTCTCTT 60.252 55.000 0.00 0.00 0.00 2.85
416 431 0.251832 TTCCAGGCGAAGGTCTCTCT 60.252 55.000 0.00 0.00 0.00 3.10
417 432 0.174617 CTTCCAGGCGAAGGTCTCTC 59.825 60.000 0.00 0.00 43.80 3.20
418 433 2.281830 CTTCCAGGCGAAGGTCTCT 58.718 57.895 0.00 0.00 43.80 3.10
487 514 7.255139 CCTCGTCAGAAGGATTAAACAAAAGTT 60.255 37.037 0.00 0.00 0.00 2.66
493 520 5.235516 GTTCCTCGTCAGAAGGATTAAACA 58.764 41.667 0.00 0.00 0.00 2.83
498 525 2.234908 CAGGTTCCTCGTCAGAAGGATT 59.765 50.000 0.00 0.00 0.00 3.01
504 531 0.247460 CATGCAGGTTCCTCGTCAGA 59.753 55.000 0.00 0.00 0.00 3.27
510 537 1.386533 CATGGACATGCAGGTTCCTC 58.613 55.000 7.44 0.00 31.39 3.71
514 541 2.048023 CGCCATGGACATGCAGGTT 61.048 57.895 18.40 0.00 37.49 3.50
525 552 1.099689 AAATTACCGAACCGCCATGG 58.900 50.000 7.63 7.63 46.41 3.66
537 564 2.796735 CGGCCGTGGCAAATAAATTACC 60.797 50.000 19.50 0.00 44.11 2.85
556 718 0.888736 TGGTTTGCTGATGGTCACGG 60.889 55.000 0.00 0.00 0.00 4.94
558 720 2.095059 GTGATGGTTTGCTGATGGTCAC 60.095 50.000 0.00 0.00 0.00 3.67
576 738 1.671845 GGGCGCCGTATTTTATTGTGA 59.328 47.619 22.54 0.00 0.00 3.58
599 761 0.752009 TAGTACGAGCTCAGCAGGGG 60.752 60.000 15.40 0.00 0.00 4.79
600 762 1.000827 CATAGTACGAGCTCAGCAGGG 60.001 57.143 15.40 0.00 0.00 4.45
601 763 1.678627 ACATAGTACGAGCTCAGCAGG 59.321 52.381 15.40 0.00 0.00 4.85
602 764 3.111838 CAACATAGTACGAGCTCAGCAG 58.888 50.000 15.40 0.00 0.00 4.24
603 765 2.492088 ACAACATAGTACGAGCTCAGCA 59.508 45.455 15.40 0.00 0.00 4.41
606 793 5.161358 CAAGAACAACATAGTACGAGCTCA 58.839 41.667 15.40 0.00 0.00 4.26
616 803 8.827177 TTTGTCCTAGTACAAGAACAACATAG 57.173 34.615 0.89 0.00 40.29 2.23
669 860 9.397280 TCTCCGTATTGATTGTATAGGAGATAG 57.603 37.037 6.76 0.00 45.43 2.08
675 866 7.036220 GGATGTCTCCGTATTGATTGTATAGG 58.964 42.308 0.00 0.00 0.00 2.57
777 975 2.260434 GTTCGCTACCGAGTGGCA 59.740 61.111 11.61 0.00 45.35 4.92
1081 1279 2.171840 CCACGGAGAAGGAGAAGAGAA 58.828 52.381 0.00 0.00 0.00 2.87
1093 1297 1.538512 CACGAAACTACTCCACGGAGA 59.461 52.381 19.98 2.94 44.53 3.71
1110 1314 0.037697 TGGGATTCGAGTTCCACACG 60.038 55.000 3.29 0.00 34.77 4.49
1191 1395 1.307343 CACCCTCCCAGTCCCATCT 60.307 63.158 0.00 0.00 0.00 2.90
1265 1481 2.350772 CGCTGAACATTTGTGTCCTTCC 60.351 50.000 0.00 0.00 0.00 3.46
1266 1482 2.290641 ACGCTGAACATTTGTGTCCTTC 59.709 45.455 0.00 0.00 0.00 3.46
1273 1490 3.073678 TGATGCTACGCTGAACATTTGT 58.926 40.909 0.00 0.00 0.00 2.83
1307 1524 6.204688 TGCGGAATTAATTGCTTGATAGTAGG 59.795 38.462 16.43 0.02 0.00 3.18
1308 1525 7.189693 TGCGGAATTAATTGCTTGATAGTAG 57.810 36.000 16.43 0.66 0.00 2.57
1309 1526 7.561021 TTGCGGAATTAATTGCTTGATAGTA 57.439 32.000 16.43 0.00 0.00 1.82
1310 1527 6.449635 TTGCGGAATTAATTGCTTGATAGT 57.550 33.333 16.43 0.00 0.00 2.12
1311 1528 6.075415 CGTTTGCGGAATTAATTGCTTGATAG 60.075 38.462 16.43 2.58 0.00 2.08
1312 1529 5.741510 CGTTTGCGGAATTAATTGCTTGATA 59.258 36.000 16.43 0.00 0.00 2.15
1313 1530 4.562394 CGTTTGCGGAATTAATTGCTTGAT 59.438 37.500 16.43 0.00 0.00 2.57
1314 1531 3.917380 CGTTTGCGGAATTAATTGCTTGA 59.083 39.130 16.43 0.92 0.00 3.02
1315 1532 4.229906 CGTTTGCGGAATTAATTGCTTG 57.770 40.909 16.43 4.52 0.00 4.01
1391 1612 1.730501 TTTCTCTGATTGCAGCGGAG 58.269 50.000 17.05 17.05 42.01 4.63
1431 1652 3.188048 GGCTGAATCATCTAAATCGCTGG 59.812 47.826 0.00 0.00 0.00 4.85
1434 1655 4.314121 AGAGGCTGAATCATCTAAATCGC 58.686 43.478 0.00 0.00 0.00 4.58
1449 1670 1.272490 TCCTACGTGTGAAAGAGGCTG 59.728 52.381 0.00 0.00 0.00 4.85
1514 1746 2.156098 TCCATAGTTCCAAACAACGGC 58.844 47.619 0.00 0.00 0.00 5.68
1519 1751 7.402054 AGTTGTATGATCCATAGTTCCAAACA 58.598 34.615 0.00 0.00 0.00 2.83
1540 1780 7.185453 GCATAGAAATTTGAGAGCTGTAGTTG 58.815 38.462 0.00 0.00 0.00 3.16
1549 1789 5.221009 GGCTCTTGGCATAGAAATTTGAGAG 60.221 44.000 0.00 1.94 44.01 3.20
1553 1793 3.448301 TGGGCTCTTGGCATAGAAATTTG 59.552 43.478 0.00 0.00 44.01 2.32
1639 1893 4.380655 CCCACAGTACAAGCTACAGTACTC 60.381 50.000 18.36 0.53 45.69 2.59
1660 1914 8.890718 GTCCTTGTTAAATAACTGTAGAATCCC 58.109 37.037 5.05 0.00 37.12 3.85
1669 1923 9.965824 ATTGAACTTGTCCTTGTTAAATAACTG 57.034 29.630 5.05 0.00 37.12 3.16
1727 2031 6.528423 CAGAATTCTACAGGAGTTTAGACACG 59.472 42.308 7.86 0.00 0.00 4.49
1753 2058 5.205759 TGATATGTCATGGAGCAGTACTG 57.794 43.478 18.93 18.93 0.00 2.74
1755 2060 6.484643 ACAAATGATATGTCATGGAGCAGTAC 59.515 38.462 5.64 0.00 44.20 2.73
1807 2176 7.993758 TCCGTCCCATAATGTAATAATGTGAAA 59.006 33.333 0.00 0.00 0.00 2.69
1809 2178 7.068686 TCCGTCCCATAATGTAATAATGTGA 57.931 36.000 0.00 0.00 0.00 3.58
1810 2179 6.371548 CCTCCGTCCCATAATGTAATAATGTG 59.628 42.308 0.00 0.00 0.00 3.21
1811 2180 6.472887 CCTCCGTCCCATAATGTAATAATGT 58.527 40.000 0.00 0.00 0.00 2.71
1812 2181 5.880332 CCCTCCGTCCCATAATGTAATAATG 59.120 44.000 0.00 0.00 0.00 1.90
1813 2182 5.788533 TCCCTCCGTCCCATAATGTAATAAT 59.211 40.000 0.00 0.00 0.00 1.28
1815 2184 4.754311 TCCCTCCGTCCCATAATGTAATA 58.246 43.478 0.00 0.00 0.00 0.98
1816 2185 3.583086 CTCCCTCCGTCCCATAATGTAAT 59.417 47.826 0.00 0.00 0.00 1.89
1820 2189 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1821 2190 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1822 2191 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1825 2194 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1826 2195 2.378378 ATTACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1827 2196 3.564264 AGAATTACTACTCCCTCCGTCC 58.436 50.000 0.00 0.00 0.00 4.79
1828 2197 5.349809 CAAAGAATTACTACTCCCTCCGTC 58.650 45.833 0.00 0.00 0.00 4.79
1829 2198 4.161754 CCAAAGAATTACTACTCCCTCCGT 59.838 45.833 0.00 0.00 0.00 4.69
1831 2200 4.720273 TCCCAAAGAATTACTACTCCCTCC 59.280 45.833 0.00 0.00 0.00 4.30
1832 2201 5.952347 TCCCAAAGAATTACTACTCCCTC 57.048 43.478 0.00 0.00 0.00 4.30
1833 2202 8.401955 TTTATCCCAAAGAATTACTACTCCCT 57.598 34.615 0.00 0.00 0.00 4.20
1834 2203 9.470399 TTTTTATCCCAAAGAATTACTACTCCC 57.530 33.333 0.00 0.00 0.00 4.30
1870 2251 6.150318 GCCGATTCGATTTAGTAATCAGAGA 58.850 40.000 7.83 0.00 40.17 3.10
1882 2263 1.154205 CGCCTCTGCCGATTCGATTT 61.154 55.000 7.83 0.00 0.00 2.17
2098 2479 2.282816 CACGGGTGGCCATTTGGA 60.283 61.111 9.72 0.00 37.39 3.53
2121 2502 4.901520 GTCGACGACGGCGGGATC 62.902 72.222 24.91 1.67 43.17 3.36
2189 2571 3.959975 GGAACTTTGCGGCGCACA 61.960 61.111 36.57 28.10 38.71 4.57
2190 2572 3.595108 GAGGAACTTTGCGGCGCAC 62.595 63.158 36.57 22.42 41.55 5.34
2218 2600 1.366366 CGACGAAGGACTGGTTGGT 59.634 57.895 0.00 0.00 0.00 3.67
2310 2692 3.703001 ACCGGGATCATGTTATCCATC 57.297 47.619 6.32 0.00 46.29 3.51
2315 2697 2.507886 TGGTGAACCGGGATCATGTTAT 59.492 45.455 10.38 0.00 39.43 1.89
2335 2717 2.469847 CACGTTCACCGATGCGTG 59.530 61.111 0.00 0.00 46.28 5.34
2370 2752 1.013755 CACGAAATCGGCTAACGCG 60.014 57.895 3.53 3.53 44.95 6.01
2400 2782 2.134789 AACACATGGCTCAGGGAATC 57.865 50.000 0.00 0.00 0.00 2.52
2404 2786 1.619654 TCAAAACACATGGCTCAGGG 58.380 50.000 0.00 0.00 0.00 4.45
2420 2802 8.623903 GCCTGAACATCAAGTATTATCATTCAA 58.376 33.333 0.00 0.00 0.00 2.69
2422 2804 8.158169 TGCCTGAACATCAAGTATTATCATTC 57.842 34.615 0.00 0.00 0.00 2.67
2427 2809 7.255242 CGGAATTGCCTGAACATCAAGTATTAT 60.255 37.037 0.00 0.00 0.00 1.28
2428 2810 6.038161 CGGAATTGCCTGAACATCAAGTATTA 59.962 38.462 0.00 0.00 0.00 0.98
2429 2811 5.163622 CGGAATTGCCTGAACATCAAGTATT 60.164 40.000 0.00 0.00 0.00 1.89
2476 2858 1.978580 CCTGAATACCCCGGATAGCTT 59.021 52.381 0.73 0.00 0.00 3.74
2477 2859 1.645710 CCTGAATACCCCGGATAGCT 58.354 55.000 0.73 0.00 0.00 3.32
2483 2865 0.463833 GAACTGCCTGAATACCCCGG 60.464 60.000 0.00 0.00 0.00 5.73
2501 2883 2.810870 AGAAAGGAGTCCGCTAGAGA 57.189 50.000 2.76 0.00 0.00 3.10
2508 2890 3.386768 TGTTCTGAAGAAAGGAGTCCG 57.613 47.619 2.76 0.00 35.58 4.79
2566 2948 2.253603 GTCTCAATTTCATTGCCGTGC 58.746 47.619 0.00 0.00 40.05 5.34
2567 2949 2.415893 GGGTCTCAATTTCATTGCCGTG 60.416 50.000 0.00 0.00 40.05 4.94
2580 2962 4.693042 TTCTTTTTACCTCGGGTCTCAA 57.307 40.909 0.00 0.00 37.09 3.02
2583 2965 5.500546 AGAATTCTTTTTACCTCGGGTCT 57.499 39.130 0.88 0.00 37.09 3.85
2599 2981 8.895288 ACGTTTTACCTTGGACGAGAAGAATTC 61.895 40.741 0.00 0.00 41.04 2.17
2600 2982 5.178809 CGTTTTACCTTGGACGAGAAGAATT 59.821 40.000 0.00 0.00 37.69 2.17
2609 2992 3.059665 GGTACAACGTTTTACCTTGGACG 60.060 47.826 28.42 4.61 41.00 4.79
2613 2996 5.488645 AAGTGGTACAACGTTTTACCTTG 57.511 39.130 32.64 11.63 44.16 3.61
2619 3002 5.642919 TGTTCAGTAAGTGGTACAACGTTTT 59.357 36.000 0.00 0.00 44.16 2.43
2633 3016 7.025365 CCATCATGTGTTCATTGTTCAGTAAG 58.975 38.462 0.00 0.00 31.15 2.34
2656 3039 4.755123 GCTGTGAGTTTTTCTACTAAGCCA 59.245 41.667 0.00 0.00 0.00 4.75
2675 3059 1.160329 GCTGAAGTCGTTGGTGCTGT 61.160 55.000 0.00 0.00 0.00 4.40
2696 3080 9.929180 TCCAGTTATGTATGCTAATATCAGAAC 57.071 33.333 0.00 0.00 32.68 3.01
2707 3091 9.712305 GACACTAATAATCCAGTTATGTATGCT 57.288 33.333 0.00 0.00 33.32 3.79
2708 3092 8.936864 GGACACTAATAATCCAGTTATGTATGC 58.063 37.037 0.00 0.00 33.32 3.14
2711 3095 9.209048 ACAGGACACTAATAATCCAGTTATGTA 57.791 33.333 0.00 0.00 33.32 2.29
2713 3097 8.204160 TGACAGGACACTAATAATCCAGTTATG 58.796 37.037 0.00 0.00 32.85 1.90
2714 3098 8.319057 TGACAGGACACTAATAATCCAGTTAT 57.681 34.615 0.00 0.00 32.85 1.89
2717 3101 6.408548 CCATGACAGGACACTAATAATCCAGT 60.409 42.308 0.00 0.00 35.17 4.00
2718 3102 5.994054 CCATGACAGGACACTAATAATCCAG 59.006 44.000 0.00 0.00 34.73 3.86
2719 3103 5.687441 GCCATGACAGGACACTAATAATCCA 60.687 44.000 0.00 0.00 34.73 3.41
2726 3112 2.840038 AGATGCCATGACAGGACACTAA 59.160 45.455 0.00 0.00 0.00 2.24
2730 3116 0.253894 CCAGATGCCATGACAGGACA 59.746 55.000 0.00 0.00 0.00 4.02
2739 3125 1.483415 GGTGAAATTGCCAGATGCCAT 59.517 47.619 0.00 0.00 40.16 4.40
2763 3149 8.703604 TCAGAAATAACTAGAATGCACTACAC 57.296 34.615 0.00 0.00 0.00 2.90
2766 3152 9.890629 AACATCAGAAATAACTAGAATGCACTA 57.109 29.630 0.00 0.00 0.00 2.74
2784 3170 9.166173 CTATTCATGGTTTCAGTAAACATCAGA 57.834 33.333 0.00 0.00 45.68 3.27
2794 3180 6.065976 TCCACATCTATTCATGGTTTCAGT 57.934 37.500 0.00 0.00 33.67 3.41
2797 3183 6.183360 TGCAATCCACATCTATTCATGGTTTC 60.183 38.462 0.00 0.00 33.67 2.78
2906 3292 2.119801 AATTTCTGACCTGCAGCGAT 57.880 45.000 8.66 0.00 44.52 4.58
2908 3294 1.135575 GGAAATTTCTGACCTGCAGCG 60.136 52.381 17.42 4.27 44.52 5.18
2918 3304 9.994432 GTACACAATCTAAGATGGAAATTTCTG 57.006 33.333 17.42 6.66 0.00 3.02
2923 3309 9.685276 TTCATGTACACAATCTAAGATGGAAAT 57.315 29.630 0.00 0.00 0.00 2.17
3080 3466 0.712380 ACAGGGATTGGAAGGCCATT 59.288 50.000 5.01 0.00 45.46 3.16
3123 3509 4.021368 GTGGAACTTGAAGCAGTCTAGGTA 60.021 45.833 0.00 0.00 33.81 3.08
3137 3523 6.090129 CCATATTTGTTAACCGTGGAACTTG 58.910 40.000 2.48 0.00 31.75 3.16
3356 3742 4.584874 TGAAACTTTGTGAAGTGGTCTCA 58.415 39.130 0.00 0.00 45.18 3.27
3371 3757 4.405116 TGAAGCCTGCAAAATGAAACTT 57.595 36.364 0.00 0.00 0.00 2.66
3477 3863 8.594881 ATCATTGAAGTTAGATCGAATGTACC 57.405 34.615 0.00 0.00 0.00 3.34
3484 3870 6.294010 CGGTCCTATCATTGAAGTTAGATCGA 60.294 42.308 0.00 0.00 0.00 3.59
3500 3886 1.344763 ACATAAGGCAGCGGTCCTATC 59.655 52.381 6.12 0.00 32.65 2.08
3673 4059 5.594725 TGTTGGTCAAAATTACCTGTAGCAA 59.405 36.000 0.00 0.00 37.91 3.91
3705 4091 4.973168 TCCTAAGCTTCTTTTGCTTCTCA 58.027 39.130 0.00 0.00 46.39 3.27
3953 4339 4.603131 AGCACATTGATCAACCTTACCAT 58.397 39.130 11.07 0.00 0.00 3.55
3958 4344 7.230849 TGAAATTAGCACATTGATCAACCTT 57.769 32.000 11.07 0.00 0.00 3.50
3981 4367 7.680982 TGTTCGACGACATTCCTTTATAAATG 58.319 34.615 0.00 0.00 38.54 2.32
4086 4472 4.573201 GCAAGGTAGAACACAAACTGTACA 59.427 41.667 0.00 0.00 30.51 2.90
4105 4491 7.490079 TGAAATTTGCAAGCTCATATAAGCAAG 59.510 33.333 0.00 0.00 45.00 4.01
4373 4764 9.577110 CATAATGTCAACTGCATAATGAACTTT 57.423 29.630 0.00 0.00 0.00 2.66
4403 4794 4.081087 AGCTTACGATCAAAGAAGCCCTAA 60.081 41.667 8.60 0.00 44.32 2.69
4419 4810 6.662414 TGAGTGATGGAATAAAAGCTTACG 57.338 37.500 0.00 0.00 0.00 3.18
4810 5201 2.426522 CTCTCCATTTCAACGGAAGCA 58.573 47.619 0.00 0.00 33.82 3.91
4927 5318 4.762956 AACTGTCCTACTAGTTCGTGTC 57.237 45.455 0.00 0.00 31.88 3.67
5003 5408 5.683681 TGATCATAAGGCTAACAGCAATGA 58.316 37.500 10.52 10.52 44.75 2.57
5172 5578 2.637382 TGTAAGAGCTGTCCAACCATCA 59.363 45.455 0.00 0.00 0.00 3.07
5421 5827 2.802719 TGCTTTACCCCAGTTGGATTC 58.197 47.619 0.00 0.00 37.39 2.52
5426 5832 3.941483 CAGACTATGCTTTACCCCAGTTG 59.059 47.826 0.00 0.00 0.00 3.16
5429 5835 4.696479 ATCAGACTATGCTTTACCCCAG 57.304 45.455 0.00 0.00 0.00 4.45
5461 5867 9.720874 TCTAGGAGGCACAATATCTATAATGAT 57.279 33.333 0.00 0.00 0.00 2.45
5529 5935 4.762251 GGGATGTGCTAGGAATGATTTACC 59.238 45.833 0.00 0.00 0.00 2.85
5670 6076 5.184671 CAGGTTAGAAGTCCTTAGTACCGTT 59.815 44.000 0.00 0.00 30.91 4.44
5840 6246 9.939802 ACACTAACCTAGAATAAAACTCGAAAT 57.060 29.630 0.00 0.00 0.00 2.17
5852 6258 7.735326 ACATGGTCTTACACTAACCTAGAAT 57.265 36.000 0.00 0.00 34.05 2.40
5905 6311 3.668447 CATGGTGATATTCGAAGGAGGG 58.332 50.000 3.35 0.00 0.00 4.30
6149 6555 4.217118 CAGCCCTATAGGAAAATGATGTGC 59.783 45.833 21.07 10.44 38.24 4.57
6379 8799 6.280855 TGTGAAGATAAATCGAGTTCCAGA 57.719 37.500 0.00 0.00 0.00 3.86
6501 8921 4.725790 AGCCTGGAAAGAATTTATGTGC 57.274 40.909 0.00 0.00 39.27 4.57
6591 9011 1.004320 ACGTTTCATGCCACCGCTA 60.004 52.632 0.00 0.00 35.36 4.26
6624 9044 6.782988 CCTTAGGGTCACCAATTAGAGAGATA 59.217 42.308 0.00 0.00 40.13 1.98
6661 9081 8.196802 TCGAATCGTGAATGAATTCAGTTTAT 57.803 30.769 14.54 1.52 46.44 1.40
6663 9083 6.480524 TCGAATCGTGAATGAATTCAGTTT 57.519 33.333 14.54 4.07 46.44 2.66
6700 9121 6.438425 ACCTACAAATTTCTCCAAGCATGAAT 59.562 34.615 0.00 0.00 0.00 2.57
6888 9310 2.090760 AGTTCAACATGCACACACACA 58.909 42.857 0.00 0.00 0.00 3.72
6906 9328 4.464008 ACTTTGGTCATGTGATGTCAAGT 58.536 39.130 0.00 0.00 0.00 3.16
6946 9368 3.428452 CCATTGAATGTGCTGCGAGATTT 60.428 43.478 4.27 0.00 0.00 2.17
7038 9460 6.258160 GCGTACGTTAATTGTACCTCTCTTA 58.742 40.000 17.90 0.00 39.16 2.10
7233 9662 2.603473 TACACCCTGCTCACCGCT 60.603 61.111 0.00 0.00 40.11 5.52
7446 9875 2.283529 TGACTCTTCTGGGCCGGAC 61.284 63.158 16.41 0.00 0.00 4.79
7498 9927 3.675775 GCCAATTTGCCACACACGATATT 60.676 43.478 0.00 0.00 0.00 1.28
7522 9952 4.272489 TGAAGCCTTAAAGCTACATGCAT 58.728 39.130 0.00 0.00 44.11 3.96
7827 10257 1.065551 GTTTTTGACACTGGCGCTCTT 59.934 47.619 7.64 0.00 0.00 2.85
7831 10261 2.292916 GCGTTTTTGACACTGGCGC 61.293 57.895 0.00 0.00 36.75 6.53
7841 10271 6.292168 CGTCCCATACTATAAGAGCGTTTTTG 60.292 42.308 0.00 0.00 0.00 2.44
7847 10277 3.079578 TCCGTCCCATACTATAAGAGCG 58.920 50.000 0.00 0.00 0.00 5.03
7853 10283 2.991713 ACTCCCTCCGTCCCATACTATA 59.008 50.000 0.00 0.00 0.00 1.31
7857 10287 2.305858 ATACTCCCTCCGTCCCATAC 57.694 55.000 0.00 0.00 0.00 2.39
7861 10291 1.893801 CACATATACTCCCTCCGTCCC 59.106 57.143 0.00 0.00 0.00 4.46
7886 10316 5.574188 ACTGAAAAGCAAGGGATTAGTGAT 58.426 37.500 0.00 0.00 0.00 3.06
7970 10401 2.036346 ACAAGCAATCCAGAAAAGCCAC 59.964 45.455 0.00 0.00 0.00 5.01
8046 10508 8.807667 AGAAGTGTTGCATTTCTCAAAATTAG 57.192 30.769 1.81 0.00 35.99 1.73
8047 10509 9.598517 AAAGAAGTGTTGCATTTCTCAAAATTA 57.401 25.926 7.22 0.00 39.01 1.40
8048 10510 8.496707 AAAGAAGTGTTGCATTTCTCAAAATT 57.503 26.923 7.22 0.00 39.01 1.82
8050 10512 7.601886 TGAAAAGAAGTGTTGCATTTCTCAAAA 59.398 29.630 7.22 0.00 39.01 2.44
8053 10515 6.095300 TCTGAAAAGAAGTGTTGCATTTCTCA 59.905 34.615 7.22 2.48 39.01 3.27
8054 10516 6.498304 TCTGAAAAGAAGTGTTGCATTTCTC 58.502 36.000 7.22 0.00 39.01 2.87
8055 10517 6.455360 TCTGAAAAGAAGTGTTGCATTTCT 57.545 33.333 6.68 1.81 41.09 2.52
8056 10518 6.698766 ACATCTGAAAAGAAGTGTTGCATTTC 59.301 34.615 0.00 0.00 31.63 2.17
8057 10519 6.576185 ACATCTGAAAAGAAGTGTTGCATTT 58.424 32.000 0.00 0.00 0.00 2.32
8064 10526 9.736023 GTAAATGAAACATCTGAAAAGAAGTGT 57.264 29.630 0.00 0.00 0.00 3.55
8164 10626 3.210227 CAATGTACTCCAACCACACACA 58.790 45.455 0.00 0.00 0.00 3.72
8165 10627 2.031157 GCAATGTACTCCAACCACACAC 60.031 50.000 0.00 0.00 0.00 3.82
8166 10628 2.226330 GCAATGTACTCCAACCACACA 58.774 47.619 0.00 0.00 0.00 3.72
8167 10629 1.539827 GGCAATGTACTCCAACCACAC 59.460 52.381 0.00 0.00 0.00 3.82
8177 10639 1.993956 TGCACAAAGGGCAATGTACT 58.006 45.000 0.00 0.00 38.54 2.73
8212 10674 7.114247 CGAACGCTGGATATTTCAAAAGAAAAA 59.886 33.333 0.00 0.00 0.00 1.94
8215 10677 5.627172 CGAACGCTGGATATTTCAAAAGAA 58.373 37.500 0.00 0.00 0.00 2.52
8217 10679 3.786048 GCGAACGCTGGATATTTCAAAAG 59.214 43.478 11.97 0.00 38.26 2.27
8232 10694 2.794910 TCAATGATAAGCTAGCGAACGC 59.205 45.455 9.55 11.31 42.33 4.84
8241 10703 6.427547 GCTCTCTGCTAAATCAATGATAAGCT 59.572 38.462 22.67 3.27 38.95 3.74
8261 10723 5.967674 CGAACATTGTTTTCCATATGCTCTC 59.032 40.000 3.08 0.00 0.00 3.20
8300 10762 5.007724 CCCCTGTAATTTTCTCTTCGCATAC 59.992 44.000 0.00 0.00 0.00 2.39
8301 10763 5.123227 CCCCTGTAATTTTCTCTTCGCATA 58.877 41.667 0.00 0.00 0.00 3.14
8302 10764 3.947834 CCCCTGTAATTTTCTCTTCGCAT 59.052 43.478 0.00 0.00 0.00 4.73
8303 10765 3.343617 CCCCTGTAATTTTCTCTTCGCA 58.656 45.455 0.00 0.00 0.00 5.10
8304 10766 2.683362 CCCCCTGTAATTTTCTCTTCGC 59.317 50.000 0.00 0.00 0.00 4.70
8305 10767 3.939592 GACCCCCTGTAATTTTCTCTTCG 59.060 47.826 0.00 0.00 0.00 3.79
8306 10768 4.918588 TGACCCCCTGTAATTTTCTCTTC 58.081 43.478 0.00 0.00 0.00 2.87
8307 10769 4.263949 CCTGACCCCCTGTAATTTTCTCTT 60.264 45.833 0.00 0.00 0.00 2.85
8308 10770 3.267031 CCTGACCCCCTGTAATTTTCTCT 59.733 47.826 0.00 0.00 0.00 3.10
8309 10771 3.010250 ACCTGACCCCCTGTAATTTTCTC 59.990 47.826 0.00 0.00 0.00 2.87
8310 10772 2.993863 ACCTGACCCCCTGTAATTTTCT 59.006 45.455 0.00 0.00 0.00 2.52
8311 10773 3.451402 ACCTGACCCCCTGTAATTTTC 57.549 47.619 0.00 0.00 0.00 2.29
8312 10774 3.308904 GCTACCTGACCCCCTGTAATTTT 60.309 47.826 0.00 0.00 0.00 1.82
8313 10775 2.241430 GCTACCTGACCCCCTGTAATTT 59.759 50.000 0.00 0.00 0.00 1.82
8314 10776 1.844497 GCTACCTGACCCCCTGTAATT 59.156 52.381 0.00 0.00 0.00 1.40
8315 10777 1.274184 TGCTACCTGACCCCCTGTAAT 60.274 52.381 0.00 0.00 0.00 1.89
8316 10778 0.117541 TGCTACCTGACCCCCTGTAA 59.882 55.000 0.00 0.00 0.00 2.41
8317 10779 0.325296 CTGCTACCTGACCCCCTGTA 60.325 60.000 0.00 0.00 0.00 2.74
8318 10780 1.613630 CTGCTACCTGACCCCCTGT 60.614 63.158 0.00 0.00 0.00 4.00
8319 10781 2.370445 CCTGCTACCTGACCCCCTG 61.370 68.421 0.00 0.00 0.00 4.45
8320 10782 1.902818 ATCCTGCTACCTGACCCCCT 61.903 60.000 0.00 0.00 0.00 4.79
8321 10783 0.105142 TATCCTGCTACCTGACCCCC 60.105 60.000 0.00 0.00 0.00 5.40
8322 10784 1.416772 GTTATCCTGCTACCTGACCCC 59.583 57.143 0.00 0.00 0.00 4.95
8323 10785 2.399580 AGTTATCCTGCTACCTGACCC 58.600 52.381 0.00 0.00 0.00 4.46
8324 10786 4.489306 AAAGTTATCCTGCTACCTGACC 57.511 45.455 0.00 0.00 0.00 4.02
8325 10787 4.876679 GGAAAAGTTATCCTGCTACCTGAC 59.123 45.833 0.00 0.00 33.98 3.51
8326 10788 4.783227 AGGAAAAGTTATCCTGCTACCTGA 59.217 41.667 0.00 0.00 45.60 3.86
8327 10789 5.104259 AGGAAAAGTTATCCTGCTACCTG 57.896 43.478 0.00 0.00 45.60 4.00
8336 10798 4.640647 GGGACATGACAGGAAAAGTTATCC 59.359 45.833 0.00 0.00 37.22 2.59
8337 10799 4.640647 GGGGACATGACAGGAAAAGTTATC 59.359 45.833 0.00 0.00 0.00 1.75
8338 10800 4.044065 TGGGGACATGACAGGAAAAGTTAT 59.956 41.667 0.00 0.00 33.40 1.89
8339 10801 3.396276 TGGGGACATGACAGGAAAAGTTA 59.604 43.478 0.00 0.00 33.40 2.24
8340 10802 2.176798 TGGGGACATGACAGGAAAAGTT 59.823 45.455 0.00 0.00 33.40 2.66
8341 10803 1.780309 TGGGGACATGACAGGAAAAGT 59.220 47.619 0.00 0.00 33.40 2.66
8342 10804 2.584835 TGGGGACATGACAGGAAAAG 57.415 50.000 0.00 0.00 33.40 2.27
8343 10805 3.164268 CATTGGGGACATGACAGGAAAA 58.836 45.455 0.00 0.00 42.32 2.29
8344 10806 2.557229 CCATTGGGGACATGACAGGAAA 60.557 50.000 0.00 0.00 42.32 3.13
8345 10807 1.005805 CCATTGGGGACATGACAGGAA 59.994 52.381 0.00 0.00 42.32 3.36
8346 10808 0.625316 CCATTGGGGACATGACAGGA 59.375 55.000 0.00 0.00 42.32 3.86
8347 10809 3.196040 CCATTGGGGACATGACAGG 57.804 57.895 0.00 0.00 42.32 4.00
8359 10821 0.816825 CACATCGAGAGCCCCATTGG 60.817 60.000 0.00 0.00 37.09 3.16
8360 10822 1.442526 GCACATCGAGAGCCCCATTG 61.443 60.000 0.00 0.00 0.00 2.82
8361 10823 1.153086 GCACATCGAGAGCCCCATT 60.153 57.895 0.00 0.00 0.00 3.16
8362 10824 1.630126 AAGCACATCGAGAGCCCCAT 61.630 55.000 0.00 0.00 33.99 4.00
8363 10825 2.293318 AAGCACATCGAGAGCCCCA 61.293 57.895 0.00 0.00 33.99 4.96
8364 10826 1.817099 CAAGCACATCGAGAGCCCC 60.817 63.158 0.00 0.00 33.99 5.80
8365 10827 1.817099 CCAAGCACATCGAGAGCCC 60.817 63.158 0.00 0.00 33.99 5.19
8366 10828 2.467826 GCCAAGCACATCGAGAGCC 61.468 63.158 0.00 0.00 33.99 4.70
8367 10829 1.427592 GAGCCAAGCACATCGAGAGC 61.428 60.000 0.00 0.00 0.00 4.09
8368 10830 0.175302 AGAGCCAAGCACATCGAGAG 59.825 55.000 0.00 0.00 0.00 3.20
8369 10831 1.406898 CTAGAGCCAAGCACATCGAGA 59.593 52.381 0.00 0.00 0.00 4.04
8370 10832 1.850377 CTAGAGCCAAGCACATCGAG 58.150 55.000 0.00 0.00 0.00 4.04
8371 10833 0.179100 GCTAGAGCCAAGCACATCGA 60.179 55.000 0.00 0.00 39.83 3.59
8372 10834 0.179089 AGCTAGAGCCAAGCACATCG 60.179 55.000 0.00 0.00 42.62 3.84
8373 10835 2.547642 CCTAGCTAGAGCCAAGCACATC 60.548 54.545 22.70 0.00 42.62 3.06
8374 10836 1.415659 CCTAGCTAGAGCCAAGCACAT 59.584 52.381 22.70 0.00 42.62 3.21
8375 10837 0.826715 CCTAGCTAGAGCCAAGCACA 59.173 55.000 22.70 0.00 42.62 4.57
8376 10838 0.531753 GCCTAGCTAGAGCCAAGCAC 60.532 60.000 22.70 0.00 42.62 4.40
8377 10839 1.826024 GCCTAGCTAGAGCCAAGCA 59.174 57.895 22.70 0.00 42.62 3.91
8378 10840 1.300542 CGCCTAGCTAGAGCCAAGC 60.301 63.158 22.70 14.00 43.38 4.01
8379 10841 1.300542 GCGCCTAGCTAGAGCCAAG 60.301 63.158 22.70 11.51 44.04 3.61
8380 10842 2.815308 GCGCCTAGCTAGAGCCAA 59.185 61.111 22.70 0.00 44.04 4.52
8402 10864 2.871236 GCTATCAGAAGGAGCATGGAGC 60.871 54.545 0.00 0.00 46.19 4.70
8403 10865 2.633967 AGCTATCAGAAGGAGCATGGAG 59.366 50.000 0.00 0.00 38.73 3.86
8404 10866 2.632028 GAGCTATCAGAAGGAGCATGGA 59.368 50.000 0.00 0.00 38.73 3.41
8405 10867 2.289569 GGAGCTATCAGAAGGAGCATGG 60.290 54.545 0.00 0.00 38.73 3.66
8406 10868 2.609984 CGGAGCTATCAGAAGGAGCATG 60.610 54.545 0.00 0.00 38.73 4.06
8407 10869 1.617850 CGGAGCTATCAGAAGGAGCAT 59.382 52.381 0.00 0.00 38.73 3.79
8408 10870 1.035923 CGGAGCTATCAGAAGGAGCA 58.964 55.000 0.00 0.00 38.73 4.26
8409 10871 1.323412 TCGGAGCTATCAGAAGGAGC 58.677 55.000 0.00 0.00 36.42 4.70
8410 10872 4.520874 TGTTATCGGAGCTATCAGAAGGAG 59.479 45.833 0.00 0.00 33.19 3.69
8411 10873 4.470602 TGTTATCGGAGCTATCAGAAGGA 58.529 43.478 0.00 0.00 33.19 3.36
8412 10874 4.855715 TGTTATCGGAGCTATCAGAAGG 57.144 45.455 0.00 0.00 33.19 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.