Multiple sequence alignment - TraesCS6A01G182800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G182800 chr6A 100.000 6012 0 0 1 6012 211646862 211640851 0.000000e+00 11103.0
1 TraesCS6A01G182800 chr6A 87.043 301 39 0 269 569 588602121 588602421 2.080000e-89 340.0
2 TraesCS6A01G182800 chr6A 86.319 307 40 2 265 569 155252277 155251971 3.470000e-87 333.0
3 TraesCS6A01G182800 chr6A 100.000 34 0 0 567 600 211646263 211646230 5.030000e-06 63.9
4 TraesCS6A01G182800 chr6A 100.000 34 0 0 600 633 211646296 211646263 5.030000e-06 63.9
5 TraesCS6A01G182800 chr6D 95.314 3820 138 20 2212 6011 158446617 158442819 0.000000e+00 6024.0
6 TraesCS6A01G182800 chr6D 92.511 908 38 12 644 1535 158447953 158447060 0.000000e+00 1273.0
7 TraesCS6A01G182800 chr6D 91.061 358 22 7 1791 2146 158446970 158446621 5.450000e-130 475.0
8 TraesCS6A01G182800 chr6D 88.953 172 15 1 105 272 158448127 158447956 6.110000e-50 209.0
9 TraesCS6A01G182800 chr6D 96.000 50 2 0 5412 5461 158443363 158443314 1.390000e-11 82.4
10 TraesCS6A01G182800 chr6B 94.677 1860 72 10 2212 4060 288637322 288639165 0.000000e+00 2861.0
11 TraesCS6A01G182800 chr6B 92.451 1338 50 14 4055 5380 288639397 288640695 0.000000e+00 1864.0
12 TraesCS6A01G182800 chr6B 93.235 946 38 16 599 1532 288635942 288636873 0.000000e+00 1369.0
13 TraesCS6A01G182800 chr6B 89.189 444 23 11 5586 6012 288644856 288645291 1.150000e-146 531.0
14 TraesCS6A01G182800 chr6B 92.500 360 22 4 1788 2146 288636963 288637318 1.490000e-140 510.0
15 TraesCS6A01G182800 chr6B 88.342 386 27 2 105 490 288574833 288575200 1.190000e-121 448.0
16 TraesCS6A01G182800 chr6B 96.350 137 3 2 1666 1801 207510901 207511036 2.180000e-54 224.0
17 TraesCS6A01G182800 chr6B 94.286 140 8 0 1666 1805 171052380 171052241 1.310000e-51 215.0
18 TraesCS6A01G182800 chr6B 94.595 74 4 0 5382 5455 288644659 288644732 1.370000e-21 115.0
19 TraesCS6A01G182800 chr7D 87.291 299 38 0 271 569 539382079 539381781 5.770000e-90 342.0
20 TraesCS6A01G182800 chr7D 97.674 129 3 0 1666 1794 117761504 117761376 7.840000e-54 222.0
21 TraesCS6A01G182800 chr7A 86.928 306 38 1 271 576 287473780 287473477 5.770000e-90 342.0
22 TraesCS6A01G182800 chr4A 87.129 303 38 1 268 569 208931428 208931126 5.770000e-90 342.0
23 TraesCS6A01G182800 chr4A 97.656 128 3 0 1665 1792 686582114 686582241 2.820000e-53 220.0
24 TraesCS6A01G182800 chr4A 90.741 162 13 2 1664 1824 652852236 652852396 1.310000e-51 215.0
25 TraesCS6A01G182800 chr4D 87.086 302 38 1 268 569 76824378 76824678 2.080000e-89 340.0
26 TraesCS6A01G182800 chr5D 86.799 303 39 1 267 569 269962523 269962824 2.680000e-88 337.0
27 TraesCS6A01G182800 chr1D 86.469 303 41 0 267 569 103032237 103031935 3.470000e-87 333.0
28 TraesCS6A01G182800 chr7B 95.035 141 7 0 1662 1802 239209373 239209513 7.840000e-54 222.0
29 TraesCS6A01G182800 chr2D 96.269 134 5 0 1666 1799 619720546 619720679 2.820000e-53 220.0
30 TraesCS6A01G182800 chr1B 95.000 140 7 0 1666 1805 543038902 543038763 2.820000e-53 220.0
31 TraesCS6A01G182800 chr3B 93.793 145 7 2 1666 1810 709011864 709011722 3.650000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G182800 chr6A 211640851 211646862 6011 True 3743.600000 11103 100.0000 1 6012 3 chr6A.!!$R2 6011
1 TraesCS6A01G182800 chr6D 158442819 158448127 5308 True 1612.680000 6024 92.7678 105 6011 5 chr6D.!!$R1 5906
2 TraesCS6A01G182800 chr6B 288635942 288645291 9349 False 1208.333333 2861 92.7745 599 6012 6 chr6B.!!$F3 5413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.175760 TGGATCGAACAGGTGCTAGC 59.824 55.000 8.10 8.10 0.00 3.42 F
581 586 0.264657 AACCAAACCAAAGGAGGCCT 59.735 50.000 3.86 3.86 33.87 5.19 F
1564 1588 0.095417 GACACGAGAAAAGGCGCATC 59.905 55.000 10.83 1.17 0.00 3.91 F
2159 2185 0.031616 GACAGGAGGAGGTGGAGGAT 60.032 60.000 0.00 0.00 0.00 3.24 F
2614 2642 0.316204 CCAAGTGAAGGCAGCCAAAG 59.684 55.000 15.80 0.00 0.00 2.77 F
3426 3461 0.373716 GTAAGGAGGCAATTGACGCG 59.626 55.000 10.34 3.53 0.00 6.01 F
4321 4602 1.147153 GGAGTATGGCTGCCTGGTC 59.853 63.158 21.03 10.81 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1569 0.095417 GATGCGCCTTTTCTCGTGTC 59.905 55.0 4.18 0.0 0.00 3.67 R
1773 1797 0.325016 GTACTCCCTCCCTCCGGAAA 60.325 60.0 5.23 0.0 37.86 3.13 R
3414 3449 0.237235 TCTGTTTCGCGTCAATTGCC 59.763 50.0 5.77 0.0 0.00 4.52 R
4113 4387 0.035152 TGCTTCCTGATGCCGAACAT 60.035 50.0 2.98 0.0 43.54 2.71 R
4167 4442 0.179124 GCAGCTAAGGAGTCAGTCGG 60.179 60.0 0.00 0.0 0.00 4.79 R
4621 4902 0.409876 TCTGCTGGTACTCAGGGTCT 59.590 55.0 11.72 0.0 43.54 3.85 R
5701 10009 0.391597 TGGTTCTGTGGTCTTCGGTC 59.608 55.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.992180 AGTTCAAACTTTTTGCATAGTTCAG 57.008 32.000 9.09 6.46 35.21 3.02
39 40 7.547227 AGTTCAAACTTTTTGCATAGTTCAGT 58.453 30.769 9.09 0.00 35.21 3.41
40 41 8.034804 AGTTCAAACTTTTTGCATAGTTCAGTT 58.965 29.630 9.09 0.69 35.21 3.16
41 42 8.655970 GTTCAAACTTTTTGCATAGTTCAGTTT 58.344 29.630 9.09 5.79 33.66 2.66
42 43 8.183830 TCAAACTTTTTGCATAGTTCAGTTTG 57.816 30.769 18.77 18.77 45.69 2.93
43 44 8.183830 CAAACTTTTTGCATAGTTCAGTTTGA 57.816 30.769 19.49 0.00 46.58 2.69
44 45 7.755582 AACTTTTTGCATAGTTCAGTTTGAC 57.244 32.000 0.00 0.00 28.79 3.18
45 46 6.273071 ACTTTTTGCATAGTTCAGTTTGACC 58.727 36.000 0.00 0.00 0.00 4.02
46 47 4.481930 TTTGCATAGTTCAGTTTGACCG 57.518 40.909 0.00 0.00 0.00 4.79
47 48 3.394674 TGCATAGTTCAGTTTGACCGA 57.605 42.857 0.00 0.00 0.00 4.69
48 49 3.325870 TGCATAGTTCAGTTTGACCGAG 58.674 45.455 0.00 0.00 0.00 4.63
49 50 3.244078 TGCATAGTTCAGTTTGACCGAGT 60.244 43.478 0.00 0.00 0.00 4.18
50 51 3.123621 GCATAGTTCAGTTTGACCGAGTG 59.876 47.826 0.00 0.00 0.00 3.51
51 52 2.981859 AGTTCAGTTTGACCGAGTGT 57.018 45.000 0.00 0.00 0.00 3.55
52 53 3.261981 AGTTCAGTTTGACCGAGTGTT 57.738 42.857 0.00 0.00 0.00 3.32
53 54 3.606687 AGTTCAGTTTGACCGAGTGTTT 58.393 40.909 0.00 0.00 0.00 2.83
54 55 4.007659 AGTTCAGTTTGACCGAGTGTTTT 58.992 39.130 0.00 0.00 0.00 2.43
55 56 4.094442 AGTTCAGTTTGACCGAGTGTTTTC 59.906 41.667 0.00 0.00 0.00 2.29
56 57 3.601435 TCAGTTTGACCGAGTGTTTTCA 58.399 40.909 0.00 0.00 0.00 2.69
57 58 4.196193 TCAGTTTGACCGAGTGTTTTCAT 58.804 39.130 0.00 0.00 0.00 2.57
58 59 4.272504 TCAGTTTGACCGAGTGTTTTCATC 59.727 41.667 0.00 0.00 0.00 2.92
59 60 3.564225 AGTTTGACCGAGTGTTTTCATCC 59.436 43.478 0.00 0.00 0.00 3.51
60 61 2.178912 TGACCGAGTGTTTTCATCCC 57.821 50.000 0.00 0.00 0.00 3.85
61 62 1.076332 GACCGAGTGTTTTCATCCCG 58.924 55.000 0.00 0.00 0.00 5.14
62 63 0.395312 ACCGAGTGTTTTCATCCCGT 59.605 50.000 0.00 0.00 0.00 5.28
63 64 1.076332 CCGAGTGTTTTCATCCCGTC 58.924 55.000 0.00 0.00 0.00 4.79
64 65 1.337823 CCGAGTGTTTTCATCCCGTCT 60.338 52.381 0.00 0.00 0.00 4.18
65 66 1.993370 CGAGTGTTTTCATCCCGTCTC 59.007 52.381 0.00 0.00 0.00 3.36
66 67 2.609491 CGAGTGTTTTCATCCCGTCTCA 60.609 50.000 0.00 0.00 0.00 3.27
67 68 2.737252 GAGTGTTTTCATCCCGTCTCAC 59.263 50.000 0.00 0.00 0.00 3.51
68 69 2.368875 AGTGTTTTCATCCCGTCTCACT 59.631 45.455 0.00 0.00 0.00 3.41
69 70 2.480419 GTGTTTTCATCCCGTCTCACTG 59.520 50.000 0.00 0.00 0.00 3.66
70 71 2.367241 TGTTTTCATCCCGTCTCACTGA 59.633 45.455 0.00 0.00 0.00 3.41
71 72 2.737252 GTTTTCATCCCGTCTCACTGAC 59.263 50.000 0.00 0.00 42.06 3.51
72 73 1.627864 TTCATCCCGTCTCACTGACA 58.372 50.000 0.00 0.00 45.60 3.58
73 74 1.852633 TCATCCCGTCTCACTGACAT 58.147 50.000 0.00 0.00 45.60 3.06
74 75 1.478105 TCATCCCGTCTCACTGACATG 59.522 52.381 0.00 0.00 45.60 3.21
75 76 1.205655 CATCCCGTCTCACTGACATGT 59.794 52.381 0.00 0.00 45.60 3.21
76 77 0.603065 TCCCGTCTCACTGACATGTG 59.397 55.000 1.15 0.00 45.60 3.21
77 78 0.318441 CCCGTCTCACTGACATGTGT 59.682 55.000 1.15 0.00 45.60 3.72
78 79 1.544246 CCCGTCTCACTGACATGTGTA 59.456 52.381 1.15 0.00 45.60 2.90
79 80 2.029380 CCCGTCTCACTGACATGTGTAA 60.029 50.000 1.15 0.00 45.60 2.41
80 81 3.554129 CCCGTCTCACTGACATGTGTAAA 60.554 47.826 1.15 0.00 45.60 2.01
81 82 4.055360 CCGTCTCACTGACATGTGTAAAA 58.945 43.478 1.15 0.00 45.60 1.52
82 83 4.509970 CCGTCTCACTGACATGTGTAAAAA 59.490 41.667 1.15 0.00 45.60 1.94
83 84 5.333339 CCGTCTCACTGACATGTGTAAAAAG 60.333 44.000 1.15 0.00 45.60 2.27
84 85 5.333339 CGTCTCACTGACATGTGTAAAAAGG 60.333 44.000 1.15 0.00 45.60 3.11
85 86 5.758296 GTCTCACTGACATGTGTAAAAAGGA 59.242 40.000 1.15 0.00 44.73 3.36
86 87 5.758296 TCTCACTGACATGTGTAAAAAGGAC 59.242 40.000 1.15 0.00 38.90 3.85
87 88 5.432645 TCACTGACATGTGTAAAAAGGACA 58.567 37.500 1.15 0.00 38.90 4.02
88 89 6.061441 TCACTGACATGTGTAAAAAGGACAT 58.939 36.000 1.15 0.00 38.90 3.06
89 90 6.017192 TCACTGACATGTGTAAAAAGGACATG 60.017 38.462 1.15 0.00 38.90 3.21
90 91 6.017192 CACTGACATGTGTAAAAAGGACATGA 60.017 38.462 16.15 0.00 33.61 3.07
91 92 6.716628 ACTGACATGTGTAAAAAGGACATGAT 59.283 34.615 16.15 3.18 0.00 2.45
92 93 6.912082 TGACATGTGTAAAAAGGACATGATG 58.088 36.000 16.15 0.00 0.00 3.07
93 94 6.072008 TGACATGTGTAAAAAGGACATGATGG 60.072 38.462 16.15 0.00 0.00 3.51
94 95 5.185635 ACATGTGTAAAAAGGACATGATGGG 59.814 40.000 16.15 0.00 0.00 4.00
95 96 4.991776 TGTGTAAAAAGGACATGATGGGA 58.008 39.130 0.00 0.00 0.00 4.37
96 97 5.009631 TGTGTAAAAAGGACATGATGGGAG 58.990 41.667 0.00 0.00 0.00 4.30
97 98 5.010282 GTGTAAAAAGGACATGATGGGAGT 58.990 41.667 0.00 0.00 0.00 3.85
98 99 5.476945 GTGTAAAAAGGACATGATGGGAGTT 59.523 40.000 0.00 0.00 0.00 3.01
99 100 5.710099 TGTAAAAAGGACATGATGGGAGTTC 59.290 40.000 0.00 0.00 0.00 3.01
100 101 4.387026 AAAAGGACATGATGGGAGTTCA 57.613 40.909 0.00 0.00 0.00 3.18
101 102 3.641434 AAGGACATGATGGGAGTTCAG 57.359 47.619 0.00 0.00 0.00 3.02
102 103 2.555664 AGGACATGATGGGAGTTCAGT 58.444 47.619 0.00 0.00 0.00 3.41
103 104 2.915604 AGGACATGATGGGAGTTCAGTT 59.084 45.455 0.00 0.00 0.00 3.16
104 105 3.012518 GGACATGATGGGAGTTCAGTTG 58.987 50.000 0.00 0.00 0.00 3.16
105 106 3.012518 GACATGATGGGAGTTCAGTTGG 58.987 50.000 0.00 0.00 0.00 3.77
106 107 1.747355 CATGATGGGAGTTCAGTTGGC 59.253 52.381 0.00 0.00 0.00 4.52
107 108 1.067295 TGATGGGAGTTCAGTTGGCT 58.933 50.000 0.00 0.00 0.00 4.75
118 119 1.347707 TCAGTTGGCTTCTCGTTGGAT 59.652 47.619 0.00 0.00 0.00 3.41
126 127 2.263077 CTTCTCGTTGGATCGAACAGG 58.737 52.381 18.99 11.17 39.34 4.00
133 134 0.175760 TGGATCGAACAGGTGCTAGC 59.824 55.000 8.10 8.10 0.00 3.42
139 140 2.076100 CGAACAGGTGCTAGCAATTCA 58.924 47.619 21.29 0.00 0.00 2.57
147 148 0.654683 GCTAGCAATTCAGTCAGGCG 59.345 55.000 10.63 0.00 0.00 5.52
157 158 2.125512 GTCAGGCGGATGCGAAGT 60.126 61.111 12.10 0.00 44.10 3.01
166 167 2.607187 CGGATGCGAAGTTTGTACTCT 58.393 47.619 0.00 0.00 31.99 3.24
172 173 2.354805 GCGAAGTTTGTACTCTGGGGAT 60.355 50.000 0.00 0.00 31.99 3.85
183 184 1.074167 CTGGGGATAGGGAGCTGGT 60.074 63.158 0.00 0.00 0.00 4.00
206 211 6.014584 GGTTCTCATGGAATTAAACCCAAACT 60.015 38.462 3.68 0.00 36.24 2.66
242 247 9.229784 CTGCAGATTTGTTATACTAGCAAAATG 57.770 33.333 8.42 4.78 41.15 2.32
269 274 7.616935 TGCATAGGAGATTCAGAAAGGAAATTT 59.383 33.333 0.00 0.00 0.00 1.82
272 277 9.859152 ATAGGAGATTCAGAAAGGAAATTTAGG 57.141 33.333 0.00 0.00 0.00 2.69
273 278 6.605194 AGGAGATTCAGAAAGGAAATTTAGGC 59.395 38.462 0.00 0.00 0.00 3.93
274 279 6.183360 GGAGATTCAGAAAGGAAATTTAGGCC 60.183 42.308 0.00 0.00 0.00 5.19
275 280 6.497640 AGATTCAGAAAGGAAATTTAGGCCT 58.502 36.000 11.78 11.78 0.00 5.19
276 281 6.605194 AGATTCAGAAAGGAAATTTAGGCCTC 59.395 38.462 9.68 0.00 0.00 4.70
277 282 4.600062 TCAGAAAGGAAATTTAGGCCTCC 58.400 43.478 9.68 2.60 0.00 4.30
278 283 4.292306 TCAGAAAGGAAATTTAGGCCTCCT 59.708 41.667 9.68 5.66 40.10 3.69
282 287 4.675063 AGGAAATTTAGGCCTCCTTTGA 57.325 40.909 9.68 0.00 34.53 2.69
283 288 5.212472 AGGAAATTTAGGCCTCCTTTGAT 57.788 39.130 9.68 0.00 34.53 2.57
284 289 5.593786 AGGAAATTTAGGCCTCCTTTGATT 58.406 37.500 9.68 0.00 34.53 2.57
285 290 6.025539 AGGAAATTTAGGCCTCCTTTGATTT 58.974 36.000 9.68 8.01 34.53 2.17
286 291 6.070596 AGGAAATTTAGGCCTCCTTTGATTTG 60.071 38.462 9.68 0.00 34.53 2.32
287 292 6.070824 GGAAATTTAGGCCTCCTTTGATTTGA 60.071 38.462 9.68 0.00 34.61 2.69
288 293 6.933514 AATTTAGGCCTCCTTTGATTTGAA 57.066 33.333 9.68 0.00 34.61 2.69
289 294 5.982890 TTTAGGCCTCCTTTGATTTGAAG 57.017 39.130 9.68 0.00 34.61 3.02
290 295 2.812658 AGGCCTCCTTTGATTTGAAGG 58.187 47.619 0.00 0.00 44.06 3.46
352 357 9.130661 AGGAAAATTTTCTTTAAACCCATTTGG 57.869 29.630 25.86 0.00 37.35 3.28
353 358 8.908903 GGAAAATTTTCTTTAAACCCATTTGGT 58.091 29.630 25.86 0.00 42.42 3.67
368 373 7.660030 CCCATTTGGTTTGTAGGAATAGAAT 57.340 36.000 0.00 0.00 0.00 2.40
369 374 8.078060 CCCATTTGGTTTGTAGGAATAGAATT 57.922 34.615 0.00 0.00 0.00 2.17
370 375 8.197439 CCCATTTGGTTTGTAGGAATAGAATTC 58.803 37.037 0.00 0.00 0.00 2.17
371 376 8.971073 CCATTTGGTTTGTAGGAATAGAATTCT 58.029 33.333 13.56 13.56 0.00 2.40
399 404 8.805145 TCCTATGAAAAGATTCTTCCTATCCT 57.195 34.615 0.00 0.00 36.48 3.24
400 405 8.875168 TCCTATGAAAAGATTCTTCCTATCCTC 58.125 37.037 0.00 0.00 36.48 3.71
401 406 8.100164 CCTATGAAAAGATTCTTCCTATCCTCC 58.900 40.741 0.00 0.00 36.48 4.30
402 407 6.891306 TGAAAAGATTCTTCCTATCCTCCA 57.109 37.500 0.00 0.00 36.48 3.86
403 408 7.457380 TGAAAAGATTCTTCCTATCCTCCAT 57.543 36.000 0.00 0.00 36.48 3.41
404 409 8.567198 TGAAAAGATTCTTCCTATCCTCCATA 57.433 34.615 0.00 0.00 36.48 2.74
405 410 9.175577 TGAAAAGATTCTTCCTATCCTCCATAT 57.824 33.333 0.00 0.00 36.48 1.78
413 418 9.889388 TTCTTCCTATCCTCCATATATCATAGG 57.111 37.037 0.00 0.00 35.93 2.57
414 419 9.254742 TCTTCCTATCCTCCATATATCATAGGA 57.745 37.037 8.84 8.84 39.98 2.94
415 420 9.889388 CTTCCTATCCTCCATATATCATAGGAA 57.111 37.037 14.57 14.57 44.92 3.36
447 452 9.882996 ACATTAGCCTAAACTAAACGTAAAAAC 57.117 29.630 0.00 0.00 35.82 2.43
450 455 7.194607 AGCCTAAACTAAACGTAAAAACTCC 57.805 36.000 0.00 0.00 0.00 3.85
451 456 6.994496 AGCCTAAACTAAACGTAAAAACTCCT 59.006 34.615 0.00 0.00 0.00 3.69
452 457 8.150296 AGCCTAAACTAAACGTAAAAACTCCTA 58.850 33.333 0.00 0.00 0.00 2.94
453 458 8.939929 GCCTAAACTAAACGTAAAAACTCCTAT 58.060 33.333 0.00 0.00 0.00 2.57
458 463 9.498176 AACTAAACGTAAAAACTCCTATGATGT 57.502 29.630 0.00 0.00 0.00 3.06
459 464 8.932791 ACTAAACGTAAAAACTCCTATGATGTG 58.067 33.333 0.00 0.00 0.00 3.21
460 465 7.972832 AAACGTAAAAACTCCTATGATGTGA 57.027 32.000 0.00 0.00 0.00 3.58
461 466 7.972832 AACGTAAAAACTCCTATGATGTGAA 57.027 32.000 0.00 0.00 0.00 3.18
462 467 7.360575 ACGTAAAAACTCCTATGATGTGAAC 57.639 36.000 0.00 0.00 0.00 3.18
463 468 6.370718 ACGTAAAAACTCCTATGATGTGAACC 59.629 38.462 0.00 0.00 0.00 3.62
464 469 6.370442 CGTAAAAACTCCTATGATGTGAACCA 59.630 38.462 0.00 0.00 0.00 3.67
465 470 7.094975 CGTAAAAACTCCTATGATGTGAACCAA 60.095 37.037 0.00 0.00 0.00 3.67
466 471 7.595819 AAAAACTCCTATGATGTGAACCAAA 57.404 32.000 0.00 0.00 0.00 3.28
467 472 6.824305 AAACTCCTATGATGTGAACCAAAG 57.176 37.500 0.00 0.00 0.00 2.77
468 473 5.762179 ACTCCTATGATGTGAACCAAAGA 57.238 39.130 0.00 0.00 0.00 2.52
469 474 6.126863 ACTCCTATGATGTGAACCAAAGAA 57.873 37.500 0.00 0.00 0.00 2.52
470 475 5.940470 ACTCCTATGATGTGAACCAAAGAAC 59.060 40.000 0.00 0.00 0.00 3.01
471 476 5.875224 TCCTATGATGTGAACCAAAGAACA 58.125 37.500 0.00 0.00 0.00 3.18
472 477 6.484288 TCCTATGATGTGAACCAAAGAACAT 58.516 36.000 0.00 0.00 36.00 2.71
473 478 6.599244 TCCTATGATGTGAACCAAAGAACATC 59.401 38.462 7.52 7.52 45.88 3.06
474 479 6.600822 CCTATGATGTGAACCAAAGAACATCT 59.399 38.462 13.87 4.75 45.87 2.90
475 480 5.947228 TGATGTGAACCAAAGAACATCTC 57.053 39.130 13.87 0.00 45.87 2.75
476 481 4.761739 TGATGTGAACCAAAGAACATCTCC 59.238 41.667 13.87 0.00 45.87 3.71
477 482 4.437682 TGTGAACCAAAGAACATCTCCT 57.562 40.909 0.00 0.00 0.00 3.69
478 483 4.792068 TGTGAACCAAAGAACATCTCCTT 58.208 39.130 0.00 0.00 0.00 3.36
479 484 5.200483 TGTGAACCAAAGAACATCTCCTTT 58.800 37.500 0.00 0.00 33.29 3.11
480 485 5.299279 TGTGAACCAAAGAACATCTCCTTTC 59.701 40.000 0.00 0.00 30.89 2.62
481 486 5.299279 GTGAACCAAAGAACATCTCCTTTCA 59.701 40.000 0.00 0.00 30.89 2.69
482 487 6.015940 GTGAACCAAAGAACATCTCCTTTCAT 60.016 38.462 0.00 0.00 30.89 2.57
483 488 7.174946 GTGAACCAAAGAACATCTCCTTTCATA 59.825 37.037 0.00 0.00 30.89 2.15
484 489 7.890127 TGAACCAAAGAACATCTCCTTTCATAT 59.110 33.333 0.00 0.00 30.89 1.78
485 490 8.655935 AACCAAAGAACATCTCCTTTCATATT 57.344 30.769 0.00 0.00 30.89 1.28
486 491 8.655935 ACCAAAGAACATCTCCTTTCATATTT 57.344 30.769 0.00 0.00 30.89 1.40
487 492 8.743714 ACCAAAGAACATCTCCTTTCATATTTC 58.256 33.333 0.00 0.00 30.89 2.17
488 493 8.964772 CCAAAGAACATCTCCTTTCATATTTCT 58.035 33.333 0.00 0.00 30.89 2.52
575 580 7.989416 TCTACACTATAAACCAAACCAAAGG 57.011 36.000 0.00 0.00 0.00 3.11
576 581 7.747690 TCTACACTATAAACCAAACCAAAGGA 58.252 34.615 0.00 0.00 0.00 3.36
577 582 6.894339 ACACTATAAACCAAACCAAAGGAG 57.106 37.500 0.00 0.00 0.00 3.69
578 583 5.773176 ACACTATAAACCAAACCAAAGGAGG 59.227 40.000 0.00 0.00 0.00 4.30
579 584 4.770531 ACTATAAACCAAACCAAAGGAGGC 59.229 41.667 0.00 0.00 0.00 4.70
580 585 1.128200 AAACCAAACCAAAGGAGGCC 58.872 50.000 0.00 0.00 0.00 5.19
581 586 0.264657 AACCAAACCAAAGGAGGCCT 59.735 50.000 3.86 3.86 33.87 5.19
604 609 7.272037 CTTTAAAGGAAACTCAGCTAAACCA 57.728 36.000 7.37 0.00 42.68 3.67
605 610 7.648039 TTTAAAGGAAACTCAGCTAAACCAA 57.352 32.000 0.00 0.00 42.68 3.67
606 611 7.648039 TTAAAGGAAACTCAGCTAAACCAAA 57.352 32.000 0.00 0.00 42.68 3.28
607 612 5.774498 AAGGAAACTCAGCTAAACCAAAG 57.226 39.130 0.00 0.00 42.68 2.77
608 613 4.145052 AGGAAACTCAGCTAAACCAAAGG 58.855 43.478 0.00 0.00 32.90 3.11
609 614 4.141251 AGGAAACTCAGCTAAACCAAAGGA 60.141 41.667 0.00 0.00 32.90 3.36
610 615 4.216472 GGAAACTCAGCTAAACCAAAGGAG 59.784 45.833 0.00 0.00 0.00 3.69
611 616 3.425162 ACTCAGCTAAACCAAAGGAGG 57.575 47.619 0.00 0.00 0.00 4.30
612 617 2.087646 CTCAGCTAAACCAAAGGAGGC 58.912 52.381 0.00 0.00 0.00 4.70
613 618 1.177401 CAGCTAAACCAAAGGAGGCC 58.823 55.000 0.00 0.00 0.00 5.19
614 619 1.076438 AGCTAAACCAAAGGAGGCCT 58.924 50.000 3.86 3.86 33.87 5.19
788 794 2.492449 ATCCTCACGACCACACTGCG 62.492 60.000 0.00 0.00 0.00 5.18
1065 1078 2.107141 GCCGGGAAGGACATCTCG 59.893 66.667 2.18 0.00 45.00 4.04
1185 1198 4.698201 TGTCAGGATCAACCAAAGTACA 57.302 40.909 0.00 0.00 42.04 2.90
1289 1312 1.508088 GCCGTCAAAATCAGGCTGG 59.492 57.895 15.73 0.00 45.67 4.85
1303 1326 3.054139 TCAGGCTGGCTGAAGTTATGATT 60.054 43.478 28.92 0.00 0.00 2.57
1334 1357 6.294010 GGTCTTCAGTTTCCACCTGTATTTTC 60.294 42.308 0.00 0.00 0.00 2.29
1339 1362 6.938030 TCAGTTTCCACCTGTATTTTCGTAAT 59.062 34.615 0.00 0.00 0.00 1.89
1341 1364 7.119262 CAGTTTCCACCTGTATTTTCGTAATCT 59.881 37.037 0.00 0.00 0.00 2.40
1356 1379 4.021456 TCGTAATCTGTTCACCATCACAGT 60.021 41.667 0.00 0.00 41.16 3.55
1361 1384 3.258372 TCTGTTCACCATCACAGTAGACC 59.742 47.826 0.00 0.00 41.16 3.85
1362 1385 2.969262 TGTTCACCATCACAGTAGACCA 59.031 45.455 0.00 0.00 0.00 4.02
1371 1394 6.442564 ACCATCACAGTAGACCAATTTACCTA 59.557 38.462 0.00 0.00 0.00 3.08
1378 1401 9.392259 ACAGTAGACCAATTTACCTAAAATAGC 57.608 33.333 0.00 0.00 36.76 2.97
1407 1431 3.877508 GGCGATGAGGTAGCAATAACTTT 59.122 43.478 0.00 0.00 0.00 2.66
1442 1466 5.528870 ACAAAACGTCCAATTTCCAAGATC 58.471 37.500 0.00 0.00 0.00 2.75
1467 1491 5.965334 GGCGTTATTCTGTGACAATGTTATG 59.035 40.000 0.00 0.00 0.00 1.90
1507 1531 6.643388 TGTGATGAACAGATAATGCTACACT 58.357 36.000 0.00 0.00 33.78 3.55
1513 1537 7.781056 TGAACAGATAATGCTACACTATCACA 58.219 34.615 0.00 0.00 26.72 3.58
1514 1538 8.424133 TGAACAGATAATGCTACACTATCACAT 58.576 33.333 0.00 0.00 26.72 3.21
1516 1540 8.824159 ACAGATAATGCTACACTATCACATTC 57.176 34.615 0.00 0.00 33.31 2.67
1523 1547 5.360999 TGCTACACTATCACATTCTACAGCT 59.639 40.000 0.00 0.00 0.00 4.24
1535 1559 7.815549 TCACATTCTACAGCTATTTTGTACGAA 59.184 33.333 0.00 0.00 0.00 3.85
1536 1560 8.440059 CACATTCTACAGCTATTTTGTACGAAA 58.560 33.333 10.70 10.70 30.07 3.46
1544 1568 9.386010 ACAGCTATTTTGTACGAAAATATACCA 57.614 29.630 12.26 0.00 33.27 3.25
1545 1569 9.864034 CAGCTATTTTGTACGAAAATATACCAG 57.136 33.333 12.26 8.38 33.27 4.00
1546 1570 9.826574 AGCTATTTTGTACGAAAATATACCAGA 57.173 29.630 12.26 0.00 33.27 3.86
1547 1571 9.859692 GCTATTTTGTACGAAAATATACCAGAC 57.140 33.333 12.26 2.67 33.27 3.51
1550 1574 6.874297 TTGTACGAAAATATACCAGACACG 57.126 37.500 0.00 0.00 0.00 4.49
1551 1575 6.193514 TGTACGAAAATATACCAGACACGA 57.806 37.500 0.00 0.00 0.00 4.35
1552 1576 6.260377 TGTACGAAAATATACCAGACACGAG 58.740 40.000 0.00 0.00 0.00 4.18
1553 1577 5.571784 ACGAAAATATACCAGACACGAGA 57.428 39.130 0.00 0.00 0.00 4.04
1554 1578 5.957798 ACGAAAATATACCAGACACGAGAA 58.042 37.500 0.00 0.00 0.00 2.87
1555 1579 6.392354 ACGAAAATATACCAGACACGAGAAA 58.608 36.000 0.00 0.00 0.00 2.52
1556 1580 6.869913 ACGAAAATATACCAGACACGAGAAAA 59.130 34.615 0.00 0.00 0.00 2.29
1557 1581 7.063074 ACGAAAATATACCAGACACGAGAAAAG 59.937 37.037 0.00 0.00 0.00 2.27
1558 1582 7.464178 CGAAAATATACCAGACACGAGAAAAGG 60.464 40.741 0.00 0.00 0.00 3.11
1559 1583 2.450609 TACCAGACACGAGAAAAGGC 57.549 50.000 0.00 0.00 0.00 4.35
1560 1584 0.600255 ACCAGACACGAGAAAAGGCG 60.600 55.000 0.00 0.00 0.00 5.52
1561 1585 1.493311 CAGACACGAGAAAAGGCGC 59.507 57.895 0.00 0.00 0.00 6.53
1562 1586 1.069090 AGACACGAGAAAAGGCGCA 59.931 52.632 10.83 0.00 0.00 6.09
1563 1587 0.320771 AGACACGAGAAAAGGCGCAT 60.321 50.000 10.83 0.00 0.00 4.73
1564 1588 0.095417 GACACGAGAAAAGGCGCATC 59.905 55.000 10.83 1.17 0.00 3.91
1565 1589 1.059369 CACGAGAAAAGGCGCATCG 59.941 57.895 10.83 11.00 39.22 3.84
1577 1601 3.408389 CGCATCGCCTAGTAGGATG 57.592 57.895 21.02 15.67 37.67 3.51
1578 1602 0.881796 CGCATCGCCTAGTAGGATGA 59.118 55.000 21.02 16.11 39.89 2.92
1579 1603 1.474478 CGCATCGCCTAGTAGGATGAT 59.526 52.381 21.02 17.57 39.89 2.45
1580 1604 2.094494 CGCATCGCCTAGTAGGATGATT 60.094 50.000 21.02 4.64 39.89 2.57
1581 1605 3.257393 GCATCGCCTAGTAGGATGATTG 58.743 50.000 21.02 15.13 39.89 2.67
1588 1612 5.279206 CGCCTAGTAGGATGATTGAGATTGT 60.279 44.000 21.02 0.00 37.67 2.71
1608 1632 9.829507 AGATTGTGTTGTTCCAAAATGAATTTA 57.170 25.926 0.00 0.00 0.00 1.40
1618 1642 8.424731 GTTCCAAAATGAATTTAACTTACTGCG 58.575 33.333 0.00 0.00 0.00 5.18
1624 1648 9.607285 AAATGAATTTAACTTACTGCGTAGTTG 57.393 29.630 12.53 8.08 38.36 3.16
1635 1659 4.186159 ACTGCGTAGTTGTAACACTTGTT 58.814 39.130 0.00 0.00 36.53 2.83
1652 1676 6.213600 ACACTTGTTCATATTCACTAGTCCCT 59.786 38.462 0.00 0.00 28.10 4.20
1668 1692 3.713764 AGTCCCTGCAGCTATTGATTACT 59.286 43.478 8.66 0.00 0.00 2.24
1669 1693 4.061596 GTCCCTGCAGCTATTGATTACTC 58.938 47.826 8.66 0.00 0.00 2.59
1670 1694 3.071602 TCCCTGCAGCTATTGATTACTCC 59.928 47.826 8.66 0.00 0.00 3.85
1671 1695 3.406764 CCTGCAGCTATTGATTACTCCC 58.593 50.000 8.66 0.00 0.00 4.30
1672 1696 3.072184 CCTGCAGCTATTGATTACTCCCT 59.928 47.826 8.66 0.00 0.00 4.20
1673 1697 4.314121 CTGCAGCTATTGATTACTCCCTC 58.686 47.826 0.00 0.00 0.00 4.30
1674 1698 3.071602 TGCAGCTATTGATTACTCCCTCC 59.928 47.826 0.00 0.00 0.00 4.30
1675 1699 3.862642 GCAGCTATTGATTACTCCCTCCG 60.863 52.174 0.00 0.00 0.00 4.63
1676 1700 3.322254 CAGCTATTGATTACTCCCTCCGT 59.678 47.826 0.00 0.00 0.00 4.69
1677 1701 3.574826 AGCTATTGATTACTCCCTCCGTC 59.425 47.826 0.00 0.00 0.00 4.79
1678 1702 3.306156 GCTATTGATTACTCCCTCCGTCC 60.306 52.174 0.00 0.00 0.00 4.79
1679 1703 1.108776 TTGATTACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
1680 1704 0.256752 TGATTACTCCCTCCGTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
1681 1705 1.341285 TGATTACTCCCTCCGTCCGAA 60.341 52.381 0.00 0.00 0.00 4.30
1682 1706 1.753073 GATTACTCCCTCCGTCCGAAA 59.247 52.381 0.00 0.00 0.00 3.46
1683 1707 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
1684 1708 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1685 1709 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1686 1710 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1687 1711 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1688 1712 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1689 1713 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1690 1714 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1691 1715 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1692 1716 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1693 1717 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1694 1718 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1695 1719 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1696 1720 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1697 1721 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1698 1722 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1699 1723 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1700 1724 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1701 1725 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1702 1726 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1703 1727 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1747 1771 9.978044 AAACTAAAATACGTCTAGATACATCCC 57.022 33.333 0.00 0.00 0.00 3.85
1748 1772 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
1749 1773 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
1750 1774 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
1751 1775 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
1752 1776 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
1753 1777 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
1754 1778 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
1755 1779 7.229581 ACGTCTAGATACATCCCCTTTTATC 57.770 40.000 0.00 0.00 0.00 1.75
1756 1780 6.210984 ACGTCTAGATACATCCCCTTTTATCC 59.789 42.308 0.00 0.00 0.00 2.59
1757 1781 6.210784 CGTCTAGATACATCCCCTTTTATCCA 59.789 42.308 0.00 0.00 0.00 3.41
1758 1782 7.093289 CGTCTAGATACATCCCCTTTTATCCAT 60.093 40.741 0.00 0.00 0.00 3.41
1759 1783 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
1760 1784 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
1761 1785 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
1762 1786 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
1763 1787 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
1764 1788 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
1765 1789 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
1766 1790 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
1767 1791 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
1768 1792 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
1769 1793 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
1770 1794 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
1771 1795 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
1772 1796 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
1778 1802 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
1779 1803 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
1780 1804 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
1781 1805 6.494893 TTTTGATGACAAGTATTTCCGGAG 57.505 37.500 3.34 0.00 37.32 4.63
1782 1806 4.941263 TTTGATGACAAGTATTTCCGGAGG 59.059 41.667 3.34 0.00 43.17 4.30
1783 1807 6.091883 TTTGATGACAAGTATTTCCGGAGGG 61.092 44.000 3.34 0.00 42.46 4.30
1784 1808 8.215881 TTTGATGACAAGTATTTCCGGAGGGA 62.216 42.308 3.34 0.00 42.46 4.20
1785 1809 9.894518 TTTGATGACAAGTATTTCCGGAGGGAG 62.895 44.444 3.34 0.00 42.46 4.30
1797 1821 2.890814 CGGAGGGAGGGAGTACATATT 58.109 52.381 0.00 0.00 0.00 1.28
1806 1830 3.827302 AGGGAGTACATATTAGGCGACTG 59.173 47.826 0.00 0.00 43.88 3.51
1813 1837 5.864418 ACATATTAGGCGACTGGTAAAGA 57.136 39.130 0.00 0.00 43.88 2.52
1855 1879 7.826260 ACATGGTTTAACTTTTCAACACTTG 57.174 32.000 0.00 0.00 0.00 3.16
1861 1885 7.971722 GGTTTAACTTTTCAACACTTGCTCTAA 59.028 33.333 0.00 0.00 0.00 2.10
1871 1895 9.474920 TTCAACACTTGCTCTAATTTATTTTGG 57.525 29.630 0.00 0.00 0.00 3.28
1987 2011 2.867109 AGGGGTGAGTGTCAATTGAG 57.133 50.000 8.80 0.00 0.00 3.02
1989 2013 2.154462 GGGGTGAGTGTCAATTGAGTG 58.846 52.381 8.80 0.00 0.00 3.51
2012 2036 1.550524 AGAACACTGCCTTCTCGCATA 59.449 47.619 0.00 0.00 38.30 3.14
2016 2040 1.600957 CACTGCCTTCTCGCATATTGG 59.399 52.381 0.00 0.00 38.30 3.16
2027 2051 5.470368 TCTCGCATATTGGTAGATGTTAGC 58.530 41.667 0.00 0.00 0.00 3.09
2098 2124 7.118723 AGGGTGAGATATCTATAAGAGCTGAG 58.881 42.308 4.89 0.00 0.00 3.35
2114 2140 4.036518 AGCTGAGACATACCAAGGATTCT 58.963 43.478 0.00 0.00 0.00 2.40
2146 2172 4.877378 ATGTTTTGGTACTACGACAGGA 57.123 40.909 0.00 0.00 0.00 3.86
2147 2173 4.247267 TGTTTTGGTACTACGACAGGAG 57.753 45.455 0.00 0.00 0.00 3.69
2148 2174 3.006110 TGTTTTGGTACTACGACAGGAGG 59.994 47.826 0.00 0.00 0.00 4.30
2149 2175 2.885135 TTGGTACTACGACAGGAGGA 57.115 50.000 0.00 0.00 0.00 3.71
2150 2176 2.414994 TGGTACTACGACAGGAGGAG 57.585 55.000 0.00 0.00 0.00 3.69
2151 2177 1.064906 TGGTACTACGACAGGAGGAGG 60.065 57.143 0.00 0.00 0.00 4.30
2152 2178 1.064832 GGTACTACGACAGGAGGAGGT 60.065 57.143 0.00 0.00 0.00 3.85
2153 2179 2.015587 GTACTACGACAGGAGGAGGTG 58.984 57.143 0.00 0.00 0.00 4.00
2154 2180 0.323542 ACTACGACAGGAGGAGGTGG 60.324 60.000 0.00 0.00 0.00 4.61
2155 2181 0.034380 CTACGACAGGAGGAGGTGGA 60.034 60.000 0.00 0.00 0.00 4.02
2156 2182 0.034380 TACGACAGGAGGAGGTGGAG 60.034 60.000 0.00 0.00 0.00 3.86
2157 2183 2.055042 CGACAGGAGGAGGTGGAGG 61.055 68.421 0.00 0.00 0.00 4.30
2158 2184 1.388531 GACAGGAGGAGGTGGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
2159 2185 0.031616 GACAGGAGGAGGTGGAGGAT 60.032 60.000 0.00 0.00 0.00 3.24
2160 2186 1.218196 GACAGGAGGAGGTGGAGGATA 59.782 57.143 0.00 0.00 0.00 2.59
2161 2187 1.651770 ACAGGAGGAGGTGGAGGATAA 59.348 52.381 0.00 0.00 0.00 1.75
2162 2188 2.251338 ACAGGAGGAGGTGGAGGATAAT 59.749 50.000 0.00 0.00 0.00 1.28
2163 2189 3.471306 ACAGGAGGAGGTGGAGGATAATA 59.529 47.826 0.00 0.00 0.00 0.98
2164 2190 4.077982 ACAGGAGGAGGTGGAGGATAATAA 60.078 45.833 0.00 0.00 0.00 1.40
2165 2191 5.097234 CAGGAGGAGGTGGAGGATAATAAT 58.903 45.833 0.00 0.00 0.00 1.28
2166 2192 6.183361 ACAGGAGGAGGTGGAGGATAATAATA 60.183 42.308 0.00 0.00 0.00 0.98
2167 2193 6.730977 CAGGAGGAGGTGGAGGATAATAATAA 59.269 42.308 0.00 0.00 0.00 1.40
2168 2194 7.404396 CAGGAGGAGGTGGAGGATAATAATAAT 59.596 40.741 0.00 0.00 0.00 1.28
2169 2195 8.642869 AGGAGGAGGTGGAGGATAATAATAATA 58.357 37.037 0.00 0.00 0.00 0.98
2170 2196 9.280456 GGAGGAGGTGGAGGATAATAATAATAA 57.720 37.037 0.00 0.00 0.00 1.40
2254 2280 8.895932 ACGAAGCAAATAGAATCAAATAACAC 57.104 30.769 0.00 0.00 0.00 3.32
2307 2335 3.562973 CGCAGATGCATCTAAATGAGGTT 59.437 43.478 28.27 0.05 42.21 3.50
2361 2389 8.517878 GCAATAATTGATTATGCTACTGGTCAT 58.482 33.333 0.00 0.00 33.51 3.06
2508 2536 2.749621 GGACTTTACACCATGCAGAAGG 59.250 50.000 0.00 0.00 0.00 3.46
2614 2642 0.316204 CCAAGTGAAGGCAGCCAAAG 59.684 55.000 15.80 0.00 0.00 2.77
2630 2658 0.608308 AAAGCTCCGGCACCCTTTAC 60.608 55.000 0.00 0.00 41.70 2.01
2633 2661 0.461516 GCTCCGGCACCCTTTACTAC 60.462 60.000 0.00 0.00 38.54 2.73
2722 2750 8.076781 GTGAAGAAGATACATAGCACTTCGATA 58.923 37.037 0.00 0.00 42.09 2.92
2775 2803 5.580691 TGGTCAGCAGAAATTCACTTATACG 59.419 40.000 0.00 0.00 0.00 3.06
2814 2849 4.115516 CTCATTAGATGGTCAGTTGGTCG 58.884 47.826 0.00 0.00 0.00 4.79
2820 2855 0.391130 TGGTCAGTTGGTCGCTATGC 60.391 55.000 0.00 0.00 0.00 3.14
2881 2916 3.433598 GCCTAGGCAATGTGGATGTAAGA 60.434 47.826 29.33 0.00 41.49 2.10
2926 2961 7.197901 AGATCATCAAGAGAATGGAGAAAGT 57.802 36.000 0.00 0.00 0.00 2.66
2964 2999 2.163815 ACCGAGGACAAGTAGAACATCG 59.836 50.000 0.00 0.00 0.00 3.84
2985 3020 3.163467 GGTAGACCGGTTATCTGGCTAT 58.837 50.000 9.42 0.00 43.58 2.97
2997 3032 1.077787 TGGCTATGCAAAGGTCCCG 60.078 57.895 0.00 0.00 0.00 5.14
3010 3045 2.829023 AGGTCCCGACAAAAGATAGGA 58.171 47.619 0.00 0.00 0.00 2.94
3156 3191 8.223330 AGCATGGATTTAAATTCTCTGGACTAT 58.777 33.333 7.98 0.00 0.00 2.12
3158 3193 8.790718 CATGGATTTAAATTCTCTGGACTATGG 58.209 37.037 7.98 0.00 0.00 2.74
3166 3201 5.860941 TTCTCTGGACTATGGTGAATCTC 57.139 43.478 0.00 0.00 0.00 2.75
3168 3203 4.892345 TCTCTGGACTATGGTGAATCTCTG 59.108 45.833 0.00 0.00 0.00 3.35
3171 3206 3.963374 TGGACTATGGTGAATCTCTGGAG 59.037 47.826 0.00 0.00 0.00 3.86
3256 3291 5.695851 AAGTTGCTACAGTGGATCAAAAG 57.304 39.130 0.13 0.00 0.00 2.27
3285 3320 5.130292 AGCTGGACATTGATTTGAAGTTG 57.870 39.130 0.00 0.00 0.00 3.16
3302 3337 7.727578 TGAAGTTGTTAGGTACTGGATCATA 57.272 36.000 0.00 0.00 41.52 2.15
3351 3386 3.261643 TGCAGAAGGATGTAGAAGCTGAA 59.738 43.478 0.00 0.00 0.00 3.02
3418 3453 1.987213 TCCGCATGTAAGGAGGCAA 59.013 52.632 0.00 0.00 37.55 4.52
3426 3461 0.373716 GTAAGGAGGCAATTGACGCG 59.626 55.000 10.34 3.53 0.00 6.01
3439 3474 2.512485 TGACGCGAAACAGAAGGTAA 57.488 45.000 15.93 0.00 0.00 2.85
3440 3475 3.034721 TGACGCGAAACAGAAGGTAAT 57.965 42.857 15.93 0.00 0.00 1.89
3445 3480 4.751098 ACGCGAAACAGAAGGTAATGTTTA 59.249 37.500 15.93 0.00 46.67 2.01
3506 3541 3.396260 TCCTAAACCGACCAAACTCTG 57.604 47.619 0.00 0.00 0.00 3.35
3635 3672 2.030893 TGCGCTTGTTGAAATGGAGAAG 60.031 45.455 9.73 0.00 0.00 2.85
3710 3747 1.515952 CGAGGCGCAGAAGAGACTG 60.516 63.158 10.83 0.00 30.66 3.51
3772 3809 1.300233 GAGCATCGGACACGGATCC 60.300 63.158 0.00 0.00 41.39 3.36
3815 3852 2.263077 GATGATATAGAAGCCGCCACG 58.737 52.381 0.00 0.00 0.00 4.94
3937 3974 2.303549 GACGCATCACAGGGGAGGAG 62.304 65.000 0.00 0.00 0.00 3.69
3962 3999 6.296026 ACAGTTTCAGCAAGAGGTAAATACA 58.704 36.000 0.00 0.00 0.00 2.29
3973 4010 8.836413 GCAAGAGGTAAATACAATACAGCATTA 58.164 33.333 0.00 0.00 0.00 1.90
4006 4043 9.765795 ATAAGACCTTCATAGTTATGCAGTTAC 57.234 33.333 0.00 0.00 33.76 2.50
4009 4046 6.947464 ACCTTCATAGTTATGCAGTTACAGT 58.053 36.000 0.00 0.00 33.76 3.55
4048 4085 3.659183 ATTCAGGGCTGCTTTCAGTAT 57.341 42.857 0.00 0.00 42.29 2.12
4051 4088 3.084039 TCAGGGCTGCTTTCAGTATTTG 58.916 45.455 0.00 0.00 42.29 2.32
4069 4343 9.875691 CAGTATTTGCATATTACTAGAGCCATA 57.124 33.333 0.00 0.00 0.00 2.74
4082 4356 4.169059 AGAGCCATATAAACACCATGCA 57.831 40.909 0.00 0.00 0.00 3.96
4083 4357 4.733165 AGAGCCATATAAACACCATGCAT 58.267 39.130 0.00 0.00 0.00 3.96
4156 4431 7.657354 GCAGGTTTCTTTTATTTGTTTCAGGAT 59.343 33.333 0.00 0.00 0.00 3.24
4171 4446 8.483307 TGTTTCAGGATAACTAATTTACCGAC 57.517 34.615 0.00 0.00 0.00 4.79
4175 4450 7.486647 TCAGGATAACTAATTTACCGACTGAC 58.513 38.462 0.00 0.00 0.00 3.51
4178 4453 6.922407 GGATAACTAATTTACCGACTGACTCC 59.078 42.308 0.00 0.00 0.00 3.85
4184 4459 2.803030 TACCGACTGACTCCTTAGCT 57.197 50.000 0.00 0.00 0.00 3.32
4192 4467 5.165961 ACTGACTCCTTAGCTGCATTTTA 57.834 39.130 1.02 0.00 0.00 1.52
4193 4468 4.938226 ACTGACTCCTTAGCTGCATTTTAC 59.062 41.667 1.02 0.00 0.00 2.01
4194 4469 5.165961 TGACTCCTTAGCTGCATTTTACT 57.834 39.130 1.02 0.00 0.00 2.24
4235 4516 8.331730 CATGATCAACCTCATGCTAATCAATA 57.668 34.615 0.00 0.00 44.26 1.90
4321 4602 1.147153 GGAGTATGGCTGCCTGGTC 59.853 63.158 21.03 10.81 0.00 4.02
4336 4617 3.223435 CCTGGTCTACGAGTACATGGAT 58.777 50.000 0.00 0.00 0.00 3.41
4492 4773 3.068691 CGAGACCTGAAGCCCGGA 61.069 66.667 0.73 0.00 0.00 5.14
4531 4812 3.062763 CAACTTCGTCAGCAAGATCAGT 58.937 45.455 0.00 0.00 0.00 3.41
4621 4902 1.810031 GCCGGCACATTCTGCTACATA 60.810 52.381 24.80 0.00 46.25 2.29
4660 4941 3.281240 GGCATGCTGACCACCAAG 58.719 61.111 18.92 0.00 0.00 3.61
4681 4962 2.545526 GTCCGACATATACTCGTTCGGA 59.454 50.000 6.93 6.93 44.50 4.55
4777 5058 1.574263 GAGCCTTCCAGGAGGTACTT 58.426 55.000 0.00 0.00 41.55 2.24
4804 5085 1.532604 CGGTGACAGACTGGCCAGTA 61.533 60.000 37.87 19.98 42.66 2.74
4823 5104 2.358737 AAGAGGCCTTGGCGTTCG 60.359 61.111 6.77 0.00 0.00 3.95
5084 5369 1.537397 ACAGGAGAGCTGCCTTCCA 60.537 57.895 18.63 0.00 32.12 3.53
5129 5414 2.486907 GCCTTTGCTCTGCTCATATCCT 60.487 50.000 0.00 0.00 33.53 3.24
5134 5419 2.364647 TGCTCTGCTCATATCCTGACTG 59.635 50.000 0.00 0.00 0.00 3.51
5257 5542 1.725164 GGAGCGTGTAAAGGAAACTCG 59.275 52.381 0.00 0.00 42.68 4.18
5271 5556 0.877071 AACTCGAGGCAATGCTTGTG 59.123 50.000 18.41 0.00 0.00 3.33
5403 9651 3.144657 TCTCACCACAATCAACAGCAT 57.855 42.857 0.00 0.00 0.00 3.79
5478 9726 8.538039 GTTTAGTTAGCAGTTATGACGTAATCC 58.462 37.037 0.00 0.00 0.00 3.01
5481 9729 7.101054 AGTTAGCAGTTATGACGTAATCCAAA 58.899 34.615 0.00 0.00 0.00 3.28
5482 9730 7.277981 AGTTAGCAGTTATGACGTAATCCAAAG 59.722 37.037 0.00 0.00 0.00 2.77
5530 9778 2.086869 CTTCTGGTGCATACTGTTGGG 58.913 52.381 0.00 0.00 0.00 4.12
5672 9980 5.574082 TGTGAAAGAAAATGTAACACCGTG 58.426 37.500 0.00 0.00 0.00 4.94
5701 10009 4.142315 CCAGTTGCCCATGAACAAATAGAG 60.142 45.833 0.00 0.00 0.00 2.43
5734 10047 3.925630 AACCATGGCCTCTGCACCG 62.926 63.158 13.04 0.00 40.13 4.94
5736 10049 4.415150 CATGGCCTCTGCACCGGT 62.415 66.667 0.00 0.00 40.13 5.28
5737 10050 4.415150 ATGGCCTCTGCACCGGTG 62.415 66.667 30.66 30.66 40.13 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.547227 ACTGAACTATGCAAAAAGTTTGAACT 58.453 30.769 12.15 0.00 42.04 3.01
15 16 7.755582 ACTGAACTATGCAAAAAGTTTGAAC 57.244 32.000 12.15 3.04 36.10 3.18
16 17 8.770438 AAACTGAACTATGCAAAAAGTTTGAA 57.230 26.923 12.15 0.00 36.10 2.69
19 20 7.277760 GGTCAAACTGAACTATGCAAAAAGTTT 59.722 33.333 12.15 9.55 36.10 2.66
20 21 6.756542 GGTCAAACTGAACTATGCAAAAAGTT 59.243 34.615 11.06 11.06 38.62 2.66
21 22 6.273071 GGTCAAACTGAACTATGCAAAAAGT 58.727 36.000 0.00 0.00 29.71 2.66
22 23 5.399301 CGGTCAAACTGAACTATGCAAAAAG 59.601 40.000 0.00 0.00 30.24 2.27
23 24 5.066634 TCGGTCAAACTGAACTATGCAAAAA 59.933 36.000 0.00 0.00 30.24 1.94
24 25 4.576873 TCGGTCAAACTGAACTATGCAAAA 59.423 37.500 0.00 0.00 30.24 2.44
25 26 4.130857 TCGGTCAAACTGAACTATGCAAA 58.869 39.130 0.00 0.00 30.24 3.68
26 27 3.734463 TCGGTCAAACTGAACTATGCAA 58.266 40.909 0.00 0.00 30.24 4.08
27 28 3.244078 ACTCGGTCAAACTGAACTATGCA 60.244 43.478 0.00 0.00 32.26 3.96
28 29 3.123621 CACTCGGTCAAACTGAACTATGC 59.876 47.826 0.00 0.00 32.26 3.14
29 30 4.307432 ACACTCGGTCAAACTGAACTATG 58.693 43.478 0.00 0.00 32.26 2.23
30 31 4.602340 ACACTCGGTCAAACTGAACTAT 57.398 40.909 0.00 0.00 32.26 2.12
31 32 4.395959 AACACTCGGTCAAACTGAACTA 57.604 40.909 0.00 0.00 32.26 2.24
32 33 2.981859 ACACTCGGTCAAACTGAACT 57.018 45.000 0.00 0.00 32.26 3.01
33 34 4.142773 TGAAAACACTCGGTCAAACTGAAC 60.143 41.667 0.00 0.00 32.26 3.18
34 35 4.004314 TGAAAACACTCGGTCAAACTGAA 58.996 39.130 0.00 0.00 32.26 3.02
35 36 3.601435 TGAAAACACTCGGTCAAACTGA 58.399 40.909 0.00 0.00 31.67 3.41
36 37 4.527564 GATGAAAACACTCGGTCAAACTG 58.472 43.478 0.00 0.00 0.00 3.16
37 38 3.564225 GGATGAAAACACTCGGTCAAACT 59.436 43.478 0.00 0.00 0.00 2.66
38 39 3.304458 GGGATGAAAACACTCGGTCAAAC 60.304 47.826 0.00 0.00 0.00 2.93
39 40 2.882137 GGGATGAAAACACTCGGTCAAA 59.118 45.455 0.00 0.00 0.00 2.69
40 41 2.500229 GGGATGAAAACACTCGGTCAA 58.500 47.619 0.00 0.00 0.00 3.18
41 42 1.606994 CGGGATGAAAACACTCGGTCA 60.607 52.381 0.00 0.00 0.00 4.02
42 43 1.076332 CGGGATGAAAACACTCGGTC 58.924 55.000 0.00 0.00 0.00 4.79
43 44 0.395312 ACGGGATGAAAACACTCGGT 59.605 50.000 0.00 0.00 0.00 4.69
44 45 1.076332 GACGGGATGAAAACACTCGG 58.924 55.000 0.00 0.00 0.00 4.63
45 46 1.993370 GAGACGGGATGAAAACACTCG 59.007 52.381 0.00 0.00 0.00 4.18
46 47 2.737252 GTGAGACGGGATGAAAACACTC 59.263 50.000 0.00 0.00 0.00 3.51
47 48 2.368875 AGTGAGACGGGATGAAAACACT 59.631 45.455 0.00 0.00 33.47 3.55
48 49 2.480419 CAGTGAGACGGGATGAAAACAC 59.520 50.000 0.00 0.00 0.00 3.32
49 50 2.367241 TCAGTGAGACGGGATGAAAACA 59.633 45.455 0.00 0.00 0.00 2.83
50 51 2.737252 GTCAGTGAGACGGGATGAAAAC 59.263 50.000 0.00 0.00 37.53 2.43
51 52 3.040147 GTCAGTGAGACGGGATGAAAA 57.960 47.619 0.00 0.00 37.53 2.29
52 53 2.743636 GTCAGTGAGACGGGATGAAA 57.256 50.000 0.00 0.00 37.53 2.69
62 63 5.758296 GTCCTTTTTACACATGTCAGTGAGA 59.242 40.000 0.00 0.00 42.05 3.27
63 64 5.527214 TGTCCTTTTTACACATGTCAGTGAG 59.473 40.000 0.00 0.00 42.05 3.51
64 65 5.432645 TGTCCTTTTTACACATGTCAGTGA 58.567 37.500 0.00 0.00 42.05 3.41
65 66 5.749596 TGTCCTTTTTACACATGTCAGTG 57.250 39.130 0.00 0.00 44.93 3.66
66 67 6.061441 TCATGTCCTTTTTACACATGTCAGT 58.939 36.000 10.27 0.00 45.16 3.41
67 68 6.558771 TCATGTCCTTTTTACACATGTCAG 57.441 37.500 10.27 0.00 45.16 3.51
68 69 6.072008 CCATCATGTCCTTTTTACACATGTCA 60.072 38.462 10.27 0.00 45.16 3.58
69 70 6.324819 CCATCATGTCCTTTTTACACATGTC 58.675 40.000 10.27 0.00 45.16 3.06
70 71 5.185635 CCCATCATGTCCTTTTTACACATGT 59.814 40.000 10.27 0.00 45.16 3.21
71 72 5.418524 TCCCATCATGTCCTTTTTACACATG 59.581 40.000 5.13 5.13 45.93 3.21
72 73 5.579047 TCCCATCATGTCCTTTTTACACAT 58.421 37.500 0.00 0.00 0.00 3.21
73 74 4.991776 TCCCATCATGTCCTTTTTACACA 58.008 39.130 0.00 0.00 0.00 3.72
74 75 5.010282 ACTCCCATCATGTCCTTTTTACAC 58.990 41.667 0.00 0.00 0.00 2.90
75 76 5.255397 ACTCCCATCATGTCCTTTTTACA 57.745 39.130 0.00 0.00 0.00 2.41
76 77 5.710099 TGAACTCCCATCATGTCCTTTTTAC 59.290 40.000 0.00 0.00 0.00 2.01
77 78 5.886609 TGAACTCCCATCATGTCCTTTTTA 58.113 37.500 0.00 0.00 0.00 1.52
78 79 4.739793 TGAACTCCCATCATGTCCTTTTT 58.260 39.130 0.00 0.00 0.00 1.94
79 80 4.202609 ACTGAACTCCCATCATGTCCTTTT 60.203 41.667 0.00 0.00 0.00 2.27
80 81 3.331889 ACTGAACTCCCATCATGTCCTTT 59.668 43.478 0.00 0.00 0.00 3.11
81 82 2.915604 ACTGAACTCCCATCATGTCCTT 59.084 45.455 0.00 0.00 0.00 3.36
82 83 2.555664 ACTGAACTCCCATCATGTCCT 58.444 47.619 0.00 0.00 0.00 3.85
83 84 3.012518 CAACTGAACTCCCATCATGTCC 58.987 50.000 0.00 0.00 0.00 4.02
84 85 3.012518 CCAACTGAACTCCCATCATGTC 58.987 50.000 0.00 0.00 0.00 3.06
85 86 2.881403 GCCAACTGAACTCCCATCATGT 60.881 50.000 0.00 0.00 0.00 3.21
86 87 1.747355 GCCAACTGAACTCCCATCATG 59.253 52.381 0.00 0.00 0.00 3.07
87 88 1.637553 AGCCAACTGAACTCCCATCAT 59.362 47.619 0.00 0.00 0.00 2.45
88 89 1.067295 AGCCAACTGAACTCCCATCA 58.933 50.000 0.00 0.00 0.00 3.07
89 90 2.087646 GAAGCCAACTGAACTCCCATC 58.912 52.381 0.00 0.00 0.00 3.51
90 91 1.707427 AGAAGCCAACTGAACTCCCAT 59.293 47.619 0.00 0.00 0.00 4.00
91 92 1.072331 GAGAAGCCAACTGAACTCCCA 59.928 52.381 0.00 0.00 0.00 4.37
92 93 1.814793 GAGAAGCCAACTGAACTCCC 58.185 55.000 0.00 0.00 0.00 4.30
93 94 1.270358 ACGAGAAGCCAACTGAACTCC 60.270 52.381 0.00 0.00 0.00 3.85
94 95 2.156343 ACGAGAAGCCAACTGAACTC 57.844 50.000 0.00 0.00 0.00 3.01
95 96 2.213499 CAACGAGAAGCCAACTGAACT 58.787 47.619 0.00 0.00 0.00 3.01
96 97 1.264288 CCAACGAGAAGCCAACTGAAC 59.736 52.381 0.00 0.00 0.00 3.18
97 98 1.140052 TCCAACGAGAAGCCAACTGAA 59.860 47.619 0.00 0.00 0.00 3.02
98 99 0.756294 TCCAACGAGAAGCCAACTGA 59.244 50.000 0.00 0.00 0.00 3.41
99 100 1.734465 GATCCAACGAGAAGCCAACTG 59.266 52.381 0.00 0.00 0.00 3.16
100 101 1.673033 CGATCCAACGAGAAGCCAACT 60.673 52.381 0.00 0.00 35.09 3.16
101 102 0.721718 CGATCCAACGAGAAGCCAAC 59.278 55.000 0.00 0.00 35.09 3.77
102 103 0.606096 TCGATCCAACGAGAAGCCAA 59.394 50.000 0.00 0.00 37.37 4.52
103 104 0.606096 TTCGATCCAACGAGAAGCCA 59.394 50.000 0.00 0.00 43.04 4.75
104 105 1.000145 GTTCGATCCAACGAGAAGCC 59.000 55.000 0.00 0.00 43.04 4.35
105 106 1.656095 CTGTTCGATCCAACGAGAAGC 59.344 52.381 0.00 0.00 43.04 3.86
106 107 2.263077 CCTGTTCGATCCAACGAGAAG 58.737 52.381 0.00 0.00 43.04 2.85
107 108 1.616865 ACCTGTTCGATCCAACGAGAA 59.383 47.619 0.00 0.00 43.04 2.87
118 119 2.289382 TGAATTGCTAGCACCTGTTCGA 60.289 45.455 19.17 0.00 0.00 3.71
126 127 1.399791 GCCTGACTGAATTGCTAGCAC 59.600 52.381 19.17 6.92 0.00 4.40
133 134 0.379669 GCATCCGCCTGACTGAATTG 59.620 55.000 0.00 0.00 0.00 2.32
139 140 2.172483 AACTTCGCATCCGCCTGACT 62.172 55.000 0.00 0.00 33.11 3.41
147 148 2.673368 CCAGAGTACAAACTTCGCATCC 59.327 50.000 0.00 0.00 35.56 3.51
157 158 3.654273 CTCCCTATCCCCAGAGTACAAA 58.346 50.000 0.00 0.00 0.00 2.83
166 167 0.694444 GAACCAGCTCCCTATCCCCA 60.694 60.000 0.00 0.00 0.00 4.96
172 173 1.008327 TCCATGAGAACCAGCTCCCTA 59.992 52.381 0.00 0.00 33.95 3.53
183 184 8.713708 TTAGTTTGGGTTTAATTCCATGAGAA 57.286 30.769 0.00 0.00 39.32 2.87
206 211 3.230134 ACAAATCTGCAGCCCTGTTTTA 58.770 40.909 9.47 0.00 0.00 1.52
242 247 5.028549 TCCTTTCTGAATCTCCTATGCAC 57.971 43.478 0.00 0.00 0.00 4.57
247 252 7.775561 GCCTAAATTTCCTTTCTGAATCTCCTA 59.224 37.037 0.00 0.00 0.00 2.94
249 254 6.183360 GGCCTAAATTTCCTTTCTGAATCTCC 60.183 42.308 0.00 0.00 0.00 3.71
269 274 3.591527 TCCTTCAAATCAAAGGAGGCCTA 59.408 43.478 4.42 0.00 45.74 3.93
326 331 9.130661 CCAAATGGGTTTAAAGAAAATTTTCCT 57.869 29.630 24.01 15.49 37.92 3.36
344 349 7.660030 ATTCTATTCCTACAAACCAAATGGG 57.340 36.000 4.17 0.00 44.81 4.00
345 350 8.971073 AGAATTCTATTCCTACAAACCAAATGG 58.029 33.333 6.06 0.00 42.17 3.16
373 378 9.230477 AGGATAGGAAGAATCTTTTCATAGGAA 57.770 33.333 0.00 0.00 34.08 3.36
374 379 8.805145 AGGATAGGAAGAATCTTTTCATAGGA 57.195 34.615 0.00 0.00 34.08 2.94
375 380 8.100164 GGAGGATAGGAAGAATCTTTTCATAGG 58.900 40.741 0.00 0.00 34.08 2.57
376 381 8.654997 TGGAGGATAGGAAGAATCTTTTCATAG 58.345 37.037 0.00 0.00 34.08 2.23
377 382 8.567198 TGGAGGATAGGAAGAATCTTTTCATA 57.433 34.615 0.00 0.00 34.08 2.15
378 383 7.457380 TGGAGGATAGGAAGAATCTTTTCAT 57.543 36.000 0.00 0.00 34.08 2.57
379 384 6.891306 TGGAGGATAGGAAGAATCTTTTCA 57.109 37.500 0.00 0.00 34.08 2.69
387 392 9.889388 CCTATGATATATGGAGGATAGGAAGAA 57.111 37.037 0.00 0.00 36.16 2.52
388 393 9.254742 TCCTATGATATATGGAGGATAGGAAGA 57.745 37.037 0.00 0.00 38.86 2.87
389 394 9.889388 TTCCTATGATATATGGAGGATAGGAAG 57.111 37.037 12.28 0.00 43.12 3.46
421 426 9.882996 GTTTTTACGTTTAGTTTAGGCTAATGT 57.117 29.630 7.96 1.74 31.83 2.71
424 429 8.773645 GGAGTTTTTACGTTTAGTTTAGGCTAA 58.226 33.333 2.04 2.04 0.00 3.09
425 430 8.150296 AGGAGTTTTTACGTTTAGTTTAGGCTA 58.850 33.333 0.00 0.00 0.00 3.93
426 431 6.994496 AGGAGTTTTTACGTTTAGTTTAGGCT 59.006 34.615 0.00 0.00 0.00 4.58
427 432 7.194607 AGGAGTTTTTACGTTTAGTTTAGGC 57.805 36.000 0.00 0.00 0.00 3.93
432 437 9.498176 ACATCATAGGAGTTTTTACGTTTAGTT 57.502 29.630 0.00 0.00 0.00 2.24
433 438 8.932791 CACATCATAGGAGTTTTTACGTTTAGT 58.067 33.333 0.00 0.00 0.00 2.24
434 439 9.146984 TCACATCATAGGAGTTTTTACGTTTAG 57.853 33.333 0.00 0.00 0.00 1.85
435 440 9.491675 TTCACATCATAGGAGTTTTTACGTTTA 57.508 29.630 0.00 0.00 0.00 2.01
436 441 7.972832 TCACATCATAGGAGTTTTTACGTTT 57.027 32.000 0.00 0.00 0.00 3.60
437 442 7.094933 GGTTCACATCATAGGAGTTTTTACGTT 60.095 37.037 0.00 0.00 0.00 3.99
438 443 6.370718 GGTTCACATCATAGGAGTTTTTACGT 59.629 38.462 0.00 0.00 0.00 3.57
439 444 6.370442 TGGTTCACATCATAGGAGTTTTTACG 59.630 38.462 0.00 0.00 0.00 3.18
440 445 7.681939 TGGTTCACATCATAGGAGTTTTTAC 57.318 36.000 0.00 0.00 0.00 2.01
441 446 8.698973 TTTGGTTCACATCATAGGAGTTTTTA 57.301 30.769 0.00 0.00 0.00 1.52
442 447 7.505585 TCTTTGGTTCACATCATAGGAGTTTTT 59.494 33.333 0.00 0.00 0.00 1.94
443 448 7.004086 TCTTTGGTTCACATCATAGGAGTTTT 58.996 34.615 0.00 0.00 0.00 2.43
444 449 6.542821 TCTTTGGTTCACATCATAGGAGTTT 58.457 36.000 0.00 0.00 0.00 2.66
445 450 6.126863 TCTTTGGTTCACATCATAGGAGTT 57.873 37.500 0.00 0.00 0.00 3.01
446 451 5.762179 TCTTTGGTTCACATCATAGGAGT 57.238 39.130 0.00 0.00 0.00 3.85
447 452 5.939883 TGTTCTTTGGTTCACATCATAGGAG 59.060 40.000 0.00 0.00 0.00 3.69
448 453 5.875224 TGTTCTTTGGTTCACATCATAGGA 58.125 37.500 0.00 0.00 0.00 2.94
449 454 6.600822 AGATGTTCTTTGGTTCACATCATAGG 59.399 38.462 12.40 0.00 45.40 2.57
450 455 7.201679 GGAGATGTTCTTTGGTTCACATCATAG 60.202 40.741 12.40 0.00 45.40 2.23
451 456 6.599244 GGAGATGTTCTTTGGTTCACATCATA 59.401 38.462 12.40 0.00 45.40 2.15
452 457 5.416952 GGAGATGTTCTTTGGTTCACATCAT 59.583 40.000 12.40 0.13 45.40 2.45
453 458 4.761739 GGAGATGTTCTTTGGTTCACATCA 59.238 41.667 12.40 0.00 45.40 3.07
454 459 5.006386 AGGAGATGTTCTTTGGTTCACATC 58.994 41.667 3.42 3.42 43.98 3.06
455 460 4.990526 AGGAGATGTTCTTTGGTTCACAT 58.009 39.130 0.00 0.00 32.41 3.21
456 461 4.437682 AGGAGATGTTCTTTGGTTCACA 57.562 40.909 0.00 0.00 0.00 3.58
457 462 5.299279 TGAAAGGAGATGTTCTTTGGTTCAC 59.701 40.000 0.00 0.00 33.85 3.18
458 463 5.445069 TGAAAGGAGATGTTCTTTGGTTCA 58.555 37.500 0.00 0.00 33.85 3.18
459 464 6.581171 ATGAAAGGAGATGTTCTTTGGTTC 57.419 37.500 0.00 0.00 33.85 3.62
460 465 8.655935 AATATGAAAGGAGATGTTCTTTGGTT 57.344 30.769 0.00 0.00 33.85 3.67
461 466 8.655935 AAATATGAAAGGAGATGTTCTTTGGT 57.344 30.769 0.00 0.00 33.85 3.67
462 467 8.964772 AGAAATATGAAAGGAGATGTTCTTTGG 58.035 33.333 0.00 0.00 33.85 3.28
549 554 8.852135 CCTTTGGTTTGGTTTATAGTGTAGAAA 58.148 33.333 0.00 0.00 0.00 2.52
550 555 8.219178 TCCTTTGGTTTGGTTTATAGTGTAGAA 58.781 33.333 0.00 0.00 0.00 2.10
551 556 7.747690 TCCTTTGGTTTGGTTTATAGTGTAGA 58.252 34.615 0.00 0.00 0.00 2.59
552 557 7.120726 CCTCCTTTGGTTTGGTTTATAGTGTAG 59.879 40.741 0.00 0.00 0.00 2.74
553 558 6.943718 CCTCCTTTGGTTTGGTTTATAGTGTA 59.056 38.462 0.00 0.00 0.00 2.90
554 559 5.773176 CCTCCTTTGGTTTGGTTTATAGTGT 59.227 40.000 0.00 0.00 0.00 3.55
555 560 5.336451 GCCTCCTTTGGTTTGGTTTATAGTG 60.336 44.000 0.00 0.00 0.00 2.74
556 561 4.770531 GCCTCCTTTGGTTTGGTTTATAGT 59.229 41.667 0.00 0.00 0.00 2.12
557 562 4.159693 GGCCTCCTTTGGTTTGGTTTATAG 59.840 45.833 0.00 0.00 0.00 1.31
558 563 4.090819 GGCCTCCTTTGGTTTGGTTTATA 58.909 43.478 0.00 0.00 0.00 0.98
559 564 2.903784 GGCCTCCTTTGGTTTGGTTTAT 59.096 45.455 0.00 0.00 0.00 1.40
560 565 2.090999 AGGCCTCCTTTGGTTTGGTTTA 60.091 45.455 0.00 0.00 0.00 2.01
561 566 1.128200 GGCCTCCTTTGGTTTGGTTT 58.872 50.000 0.00 0.00 0.00 3.27
562 567 0.264657 AGGCCTCCTTTGGTTTGGTT 59.735 50.000 0.00 0.00 0.00 3.67
563 568 0.264657 AAGGCCTCCTTTGGTTTGGT 59.735 50.000 5.23 0.00 41.69 3.67
564 569 3.147826 AAGGCCTCCTTTGGTTTGG 57.852 52.632 5.23 0.00 41.69 3.28
573 578 3.397955 TGAGTTTCCTTTAAAGGCCTCCT 59.602 43.478 26.75 18.67 46.06 3.69
574 579 3.759086 CTGAGTTTCCTTTAAAGGCCTCC 59.241 47.826 26.75 14.87 46.06 4.30
575 580 3.191581 GCTGAGTTTCCTTTAAAGGCCTC 59.808 47.826 26.75 26.20 46.06 4.70
576 581 3.157881 GCTGAGTTTCCTTTAAAGGCCT 58.842 45.455 26.75 20.83 46.06 5.19
577 582 3.157881 AGCTGAGTTTCCTTTAAAGGCC 58.842 45.455 26.75 17.06 46.06 5.19
578 583 5.959618 TTAGCTGAGTTTCCTTTAAAGGC 57.040 39.130 26.75 14.54 46.06 4.35
580 585 7.272037 TGGTTTAGCTGAGTTTCCTTTAAAG 57.728 36.000 8.32 8.32 0.00 1.85
581 586 7.648039 TTGGTTTAGCTGAGTTTCCTTTAAA 57.352 32.000 0.00 0.00 0.00 1.52
582 587 7.201875 CCTTTGGTTTAGCTGAGTTTCCTTTAA 60.202 37.037 0.00 0.00 0.00 1.52
583 588 6.264518 CCTTTGGTTTAGCTGAGTTTCCTTTA 59.735 38.462 0.00 0.00 0.00 1.85
584 589 5.069119 CCTTTGGTTTAGCTGAGTTTCCTTT 59.931 40.000 0.00 0.00 0.00 3.11
585 590 4.584743 CCTTTGGTTTAGCTGAGTTTCCTT 59.415 41.667 0.00 0.00 0.00 3.36
586 591 4.141251 TCCTTTGGTTTAGCTGAGTTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
587 592 4.142038 TCCTTTGGTTTAGCTGAGTTTCC 58.858 43.478 0.00 0.00 0.00 3.13
588 593 4.216472 CCTCCTTTGGTTTAGCTGAGTTTC 59.784 45.833 0.00 0.00 0.00 2.78
589 594 4.145052 CCTCCTTTGGTTTAGCTGAGTTT 58.855 43.478 0.00 0.00 0.00 2.66
590 595 3.756117 CCTCCTTTGGTTTAGCTGAGTT 58.244 45.455 0.00 0.00 0.00 3.01
591 596 2.553247 GCCTCCTTTGGTTTAGCTGAGT 60.553 50.000 0.00 0.00 0.00 3.41
592 597 2.087646 GCCTCCTTTGGTTTAGCTGAG 58.912 52.381 0.00 0.00 0.00 3.35
593 598 1.271926 GGCCTCCTTTGGTTTAGCTGA 60.272 52.381 0.00 0.00 0.00 4.26
594 599 1.177401 GGCCTCCTTTGGTTTAGCTG 58.823 55.000 0.00 0.00 0.00 4.24
595 600 1.076438 AGGCCTCCTTTGGTTTAGCT 58.924 50.000 0.00 0.00 0.00 3.32
596 601 1.924731 AAGGCCTCCTTTGGTTTAGC 58.075 50.000 5.23 0.00 41.69 3.09
606 611 3.397955 TGAGTTTCCTTTAAAGGCCTCCT 59.602 43.478 26.75 18.67 46.06 3.69
607 612 3.759086 CTGAGTTTCCTTTAAAGGCCTCC 59.241 47.826 26.75 14.87 46.06 4.30
608 613 3.191581 GCTGAGTTTCCTTTAAAGGCCTC 59.808 47.826 26.75 26.20 46.06 4.70
609 614 3.157881 GCTGAGTTTCCTTTAAAGGCCT 58.842 45.455 26.75 20.83 46.06 5.19
610 615 3.157881 AGCTGAGTTTCCTTTAAAGGCC 58.842 45.455 26.75 17.06 46.06 5.19
611 616 4.142578 GCTAGCTGAGTTTCCTTTAAAGGC 60.143 45.833 26.75 14.54 46.06 4.35
612 617 7.370186 GCGCTAGCTGAGTTTCCTTTAAAGG 62.370 48.000 25.83 25.83 43.24 3.11
613 618 4.436183 GCGCTAGCTGAGTTTCCTTTAAAG 60.436 45.833 13.93 8.32 41.01 1.85
614 619 3.435671 GCGCTAGCTGAGTTTCCTTTAAA 59.564 43.478 13.93 0.00 41.01 1.52
894 900 3.051341 TCCCCCTTTGCTTATCTCTCCTA 60.051 47.826 0.00 0.00 0.00 2.94
964 977 2.022129 AACCAACGAAGCGAGCGAG 61.022 57.895 0.00 0.00 0.00 5.03
1065 1078 4.124351 TCGACGGCCACGATGGTC 62.124 66.667 16.28 6.99 44.60 4.02
1110 1123 1.752694 CCGATCCACCGCCCATTTT 60.753 57.895 0.00 0.00 0.00 1.82
1231 1254 8.703378 AAAGGTCTCTTCTGATTTTCATTTCT 57.297 30.769 0.00 0.00 31.82 2.52
1249 1272 4.822026 CGTTCAGATGTAGGAAAAGGTCT 58.178 43.478 0.00 0.00 0.00 3.85
1289 1312 4.455606 ACCCTAGCAATCATAACTTCAGC 58.544 43.478 0.00 0.00 0.00 4.26
1303 1326 2.038557 GTGGAAACTGAAGACCCTAGCA 59.961 50.000 0.00 0.00 0.00 3.49
1334 1357 4.245660 ACTGTGATGGTGAACAGATTACG 58.754 43.478 9.63 0.00 45.43 3.18
1339 1362 3.258372 GGTCTACTGTGATGGTGAACAGA 59.742 47.826 9.63 0.00 45.43 3.41
1341 1364 2.969262 TGGTCTACTGTGATGGTGAACA 59.031 45.455 0.00 0.00 0.00 3.18
1356 1379 8.554011 ACCTGCTATTTTAGGTAAATTGGTCTA 58.446 33.333 0.00 0.00 45.20 2.59
1361 1384 7.277760 GCCAAACCTGCTATTTTAGGTAAATTG 59.722 37.037 0.00 0.00 46.28 2.32
1362 1385 7.327975 GCCAAACCTGCTATTTTAGGTAAATT 58.672 34.615 0.00 0.00 46.28 1.82
1371 1394 3.088532 TCATCGCCAAACCTGCTATTTT 58.911 40.909 0.00 0.00 0.00 1.82
1376 1399 1.377725 CCTCATCGCCAAACCTGCT 60.378 57.895 0.00 0.00 0.00 4.24
1377 1400 0.392461 TACCTCATCGCCAAACCTGC 60.392 55.000 0.00 0.00 0.00 4.85
1378 1401 1.656652 CTACCTCATCGCCAAACCTG 58.343 55.000 0.00 0.00 0.00 4.00
1407 1431 7.731882 TTGGACGTTTTGTTTGTCATCTATA 57.268 32.000 0.00 0.00 34.32 1.31
1421 1445 4.320935 CCGATCTTGGAAATTGGACGTTTT 60.321 41.667 0.00 0.00 30.18 2.43
1442 1466 2.415168 ACATTGTCACAGAATAACGCCG 59.585 45.455 0.00 0.00 0.00 6.46
1496 1520 7.867909 GCTGTAGAATGTGATAGTGTAGCATTA 59.132 37.037 0.00 0.00 30.96 1.90
1507 1531 9.244799 CGTACAAAATAGCTGTAGAATGTGATA 57.755 33.333 0.00 0.00 30.04 2.15
1532 1556 6.880822 TTTCTCGTGTCTGGTATATTTTCG 57.119 37.500 0.00 0.00 0.00 3.46
1535 1559 5.585047 GCCTTTTCTCGTGTCTGGTATATTT 59.415 40.000 0.00 0.00 0.00 1.40
1536 1560 5.116882 GCCTTTTCTCGTGTCTGGTATATT 58.883 41.667 0.00 0.00 0.00 1.28
1539 1563 2.674177 CGCCTTTTCTCGTGTCTGGTAT 60.674 50.000 0.00 0.00 0.00 2.73
1540 1564 1.336517 CGCCTTTTCTCGTGTCTGGTA 60.337 52.381 0.00 0.00 0.00 3.25
1541 1565 0.600255 CGCCTTTTCTCGTGTCTGGT 60.600 55.000 0.00 0.00 0.00 4.00
1542 1566 1.901650 GCGCCTTTTCTCGTGTCTGG 61.902 60.000 0.00 0.00 0.00 3.86
1543 1567 1.221466 TGCGCCTTTTCTCGTGTCTG 61.221 55.000 4.18 0.00 0.00 3.51
1544 1568 0.320771 ATGCGCCTTTTCTCGTGTCT 60.321 50.000 4.18 0.00 0.00 3.41
1545 1569 0.095417 GATGCGCCTTTTCTCGTGTC 59.905 55.000 4.18 0.00 0.00 3.67
1546 1570 1.626654 CGATGCGCCTTTTCTCGTGT 61.627 55.000 4.18 0.00 0.00 4.49
1547 1571 1.059369 CGATGCGCCTTTTCTCGTG 59.941 57.895 4.18 0.00 0.00 4.35
1548 1572 3.474806 CGATGCGCCTTTTCTCGT 58.525 55.556 4.18 0.00 0.00 4.18
1559 1583 0.881796 TCATCCTACTAGGCGATGCG 59.118 55.000 9.80 0.00 34.61 4.73
1560 1584 3.056536 TCAATCATCCTACTAGGCGATGC 60.057 47.826 9.80 0.00 34.61 3.91
1561 1585 4.460731 TCTCAATCATCCTACTAGGCGATG 59.539 45.833 8.79 8.79 34.61 3.84
1562 1586 4.667573 TCTCAATCATCCTACTAGGCGAT 58.332 43.478 0.00 0.00 34.61 4.58
1563 1587 4.100279 TCTCAATCATCCTACTAGGCGA 57.900 45.455 0.00 0.00 34.61 5.54
1564 1588 5.167121 CAATCTCAATCATCCTACTAGGCG 58.833 45.833 0.00 0.00 34.61 5.52
1565 1589 5.931146 CACAATCTCAATCATCCTACTAGGC 59.069 44.000 0.00 0.00 34.61 3.93
1566 1590 7.060383 ACACAATCTCAATCATCCTACTAGG 57.940 40.000 0.00 0.00 36.46 3.02
1567 1591 7.984050 ACAACACAATCTCAATCATCCTACTAG 59.016 37.037 0.00 0.00 0.00 2.57
1568 1592 7.851228 ACAACACAATCTCAATCATCCTACTA 58.149 34.615 0.00 0.00 0.00 1.82
1569 1593 6.715280 ACAACACAATCTCAATCATCCTACT 58.285 36.000 0.00 0.00 0.00 2.57
1570 1594 6.992063 ACAACACAATCTCAATCATCCTAC 57.008 37.500 0.00 0.00 0.00 3.18
1571 1595 6.599244 GGAACAACACAATCTCAATCATCCTA 59.401 38.462 0.00 0.00 0.00 2.94
1572 1596 5.416952 GGAACAACACAATCTCAATCATCCT 59.583 40.000 0.00 0.00 0.00 3.24
1573 1597 5.183713 TGGAACAACACAATCTCAATCATCC 59.816 40.000 0.00 0.00 31.92 3.51
1574 1598 6.258230 TGGAACAACACAATCTCAATCATC 57.742 37.500 0.00 0.00 31.92 2.92
1608 1632 5.594926 AGTGTTACAACTACGCAGTAAGTT 58.405 37.500 0.00 0.00 45.13 2.66
1618 1642 9.807386 GTGAATATGAACAAGTGTTACAACTAC 57.193 33.333 0.00 0.00 38.56 2.73
1624 1648 8.870879 GGACTAGTGAATATGAACAAGTGTTAC 58.129 37.037 0.00 0.00 38.56 2.50
1635 1659 3.070159 GCTGCAGGGACTAGTGAATATGA 59.930 47.826 17.12 0.00 36.02 2.15
1652 1676 3.071602 GGAGGGAGTAATCAATAGCTGCA 59.928 47.826 1.02 0.00 0.00 4.41
1668 1692 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1669 1693 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1670 1694 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1671 1695 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1672 1696 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1673 1697 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1674 1698 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1675 1699 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
1676 1700 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
1677 1701 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1678 1702 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
1721 1745 9.978044 GGGATGTATCTAGACGTATTTTAGTTT 57.022 33.333 0.00 0.00 0.00 2.66
1722 1746 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
1723 1747 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
1724 1748 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
1725 1749 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
1726 1750 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
1727 1751 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
1728 1752 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
1729 1753 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
1730 1754 7.395489 GGATAAAAGGGGATGTATCTAGACGTA 59.605 40.741 0.00 0.00 0.00 3.57
1731 1755 6.210984 GGATAAAAGGGGATGTATCTAGACGT 59.789 42.308 0.00 0.00 0.00 4.34
1732 1756 6.210784 TGGATAAAAGGGGATGTATCTAGACG 59.789 42.308 0.00 0.00 0.00 4.18
1733 1757 7.554959 TGGATAAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
1734 1758 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
1735 1759 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
1736 1760 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
1737 1761 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
1738 1762 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
1739 1763 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
1740 1764 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
1741 1765 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
1742 1766 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
1743 1767 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
1744 1768 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
1745 1769 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
1746 1770 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
1752 1776 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
1753 1777 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
1754 1778 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
1755 1779 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
1756 1780 6.851609 TCCGGAAATACTTGTCATCAAAATG 58.148 36.000 0.00 0.00 32.87 2.32
1757 1781 6.095440 CCTCCGGAAATACTTGTCATCAAAAT 59.905 38.462 5.23 0.00 32.87 1.82
1758 1782 5.414454 CCTCCGGAAATACTTGTCATCAAAA 59.586 40.000 5.23 0.00 32.87 2.44
1759 1783 4.941263 CCTCCGGAAATACTTGTCATCAAA 59.059 41.667 5.23 0.00 32.87 2.69
1760 1784 4.513442 CCTCCGGAAATACTTGTCATCAA 58.487 43.478 5.23 0.00 0.00 2.57
1761 1785 3.118408 CCCTCCGGAAATACTTGTCATCA 60.118 47.826 5.23 0.00 0.00 3.07
1762 1786 3.134081 TCCCTCCGGAAATACTTGTCATC 59.866 47.826 5.23 0.00 34.19 2.92
1763 1787 3.112263 TCCCTCCGGAAATACTTGTCAT 58.888 45.455 5.23 0.00 34.19 3.06
1764 1788 2.500098 CTCCCTCCGGAAATACTTGTCA 59.500 50.000 5.23 0.00 37.86 3.58
1765 1789 2.158943 CCTCCCTCCGGAAATACTTGTC 60.159 54.545 5.23 0.00 37.86 3.18
1766 1790 1.838077 CCTCCCTCCGGAAATACTTGT 59.162 52.381 5.23 0.00 37.86 3.16
1767 1791 1.141053 CCCTCCCTCCGGAAATACTTG 59.859 57.143 5.23 0.00 37.86 3.16
1768 1792 1.009183 TCCCTCCCTCCGGAAATACTT 59.991 52.381 5.23 0.00 37.86 2.24
1769 1793 0.640495 TCCCTCCCTCCGGAAATACT 59.360 55.000 5.23 0.00 37.86 2.12
1770 1794 1.049402 CTCCCTCCCTCCGGAAATAC 58.951 60.000 5.23 0.00 37.86 1.89
1771 1795 0.640495 ACTCCCTCCCTCCGGAAATA 59.360 55.000 5.23 0.00 37.86 1.40
1772 1796 0.640495 TACTCCCTCCCTCCGGAAAT 59.360 55.000 5.23 0.00 37.86 2.17
1773 1797 0.325016 GTACTCCCTCCCTCCGGAAA 60.325 60.000 5.23 0.00 37.86 3.13
1774 1798 1.309006 GTACTCCCTCCCTCCGGAA 59.691 63.158 5.23 0.00 37.86 4.30
1775 1799 1.294426 ATGTACTCCCTCCCTCCGGA 61.294 60.000 2.93 2.93 36.45 5.14
1776 1800 0.481567 TATGTACTCCCTCCCTCCGG 59.518 60.000 0.00 0.00 0.00 5.14
1777 1801 2.606751 ATATGTACTCCCTCCCTCCG 57.393 55.000 0.00 0.00 0.00 4.63
1778 1802 4.354662 CCTAATATGTACTCCCTCCCTCC 58.645 52.174 0.00 0.00 0.00 4.30
1779 1803 3.770388 GCCTAATATGTACTCCCTCCCTC 59.230 52.174 0.00 0.00 0.00 4.30
1780 1804 3.792515 GCCTAATATGTACTCCCTCCCT 58.207 50.000 0.00 0.00 0.00 4.20
1781 1805 2.496470 CGCCTAATATGTACTCCCTCCC 59.504 54.545 0.00 0.00 0.00 4.30
1782 1806 3.193056 GTCGCCTAATATGTACTCCCTCC 59.807 52.174 0.00 0.00 0.00 4.30
1783 1807 4.080687 AGTCGCCTAATATGTACTCCCTC 58.919 47.826 0.00 0.00 0.00 4.30
1784 1808 3.827302 CAGTCGCCTAATATGTACTCCCT 59.173 47.826 0.00 0.00 0.00 4.20
1785 1809 3.056749 CCAGTCGCCTAATATGTACTCCC 60.057 52.174 0.00 0.00 0.00 4.30
1786 1810 3.573110 ACCAGTCGCCTAATATGTACTCC 59.427 47.826 0.00 0.00 0.00 3.85
1787 1811 4.850347 ACCAGTCGCCTAATATGTACTC 57.150 45.455 0.00 0.00 0.00 2.59
1788 1812 6.548622 TCTTTACCAGTCGCCTAATATGTACT 59.451 38.462 0.00 0.00 0.00 2.73
1789 1813 6.742109 TCTTTACCAGTCGCCTAATATGTAC 58.258 40.000 0.00 0.00 0.00 2.90
1790 1814 6.964807 TCTTTACCAGTCGCCTAATATGTA 57.035 37.500 0.00 0.00 0.00 2.29
1791 1815 5.864418 TCTTTACCAGTCGCCTAATATGT 57.136 39.130 0.00 0.00 0.00 2.29
1792 1816 7.730364 AAATCTTTACCAGTCGCCTAATATG 57.270 36.000 0.00 0.00 0.00 1.78
1794 1818 9.841295 AATAAAATCTTTACCAGTCGCCTAATA 57.159 29.630 0.00 0.00 0.00 0.98
1797 1821 7.562135 AGAATAAAATCTTTACCAGTCGCCTA 58.438 34.615 0.00 0.00 0.00 3.93
1846 1870 8.637986 ACCAAAATAAATTAGAGCAAGTGTTGA 58.362 29.630 0.00 0.00 0.00 3.18
1871 1895 2.092103 TCCCCTGTTAATGTGGCCATAC 60.092 50.000 9.72 0.00 0.00 2.39
1884 1908 4.351054 CGGCCTGCTTCCCCTGTT 62.351 66.667 0.00 0.00 0.00 3.16
1987 2011 2.342179 GAGAAGGCAGTGTTCTAGCAC 58.658 52.381 0.00 0.00 34.30 4.40
1989 2013 1.634702 CGAGAAGGCAGTGTTCTAGC 58.365 55.000 0.00 0.00 34.30 3.42
2012 2036 6.183360 GCCAATTTGAGCTAACATCTACCAAT 60.183 38.462 0.00 0.00 0.00 3.16
2016 2040 5.818136 TGCCAATTTGAGCTAACATCTAC 57.182 39.130 0.00 0.00 0.00 2.59
2075 2101 7.609918 TGTCTCAGCTCTTATAGATATCTCACC 59.390 40.741 8.95 0.00 0.00 4.02
2080 2106 9.402320 TGGTATGTCTCAGCTCTTATAGATATC 57.598 37.037 0.00 0.00 0.00 1.63
2081 2107 9.760926 TTGGTATGTCTCAGCTCTTATAGATAT 57.239 33.333 0.00 0.00 0.00 1.63
2082 2108 9.237187 CTTGGTATGTCTCAGCTCTTATAGATA 57.763 37.037 0.00 0.00 0.00 1.98
2091 2117 4.100808 AGAATCCTTGGTATGTCTCAGCTC 59.899 45.833 0.00 0.00 0.00 4.09
2126 2152 3.006110 CCTCCTGTCGTAGTACCAAAACA 59.994 47.826 0.00 0.00 0.00 2.83
2139 2165 2.055042 CCTCCACCTCCTCCTGTCG 61.055 68.421 0.00 0.00 0.00 4.35
2307 2335 6.216046 TGGAGATATCATTGCCATCCAAGATA 59.784 38.462 5.32 0.00 36.76 1.98
2361 2389 2.235891 ACTACGATATCGGTGATGGCA 58.764 47.619 27.58 0.00 44.95 4.92
2508 2536 5.048083 TGTTGGCACATCAGGATTTCTAAAC 60.048 40.000 0.00 0.00 39.30 2.01
2614 2642 0.461516 GTAGTAAAGGGTGCCGGAGC 60.462 60.000 5.05 0.00 40.48 4.70
2630 2658 1.475403 TTGCTTCGGAGGGAGAGTAG 58.525 55.000 0.00 0.00 0.00 2.57
2633 2661 1.002544 AGTTTTGCTTCGGAGGGAGAG 59.997 52.381 0.00 0.00 0.00 3.20
2722 2750 5.928264 GCTTCAGGAACATGCTTTGTATTTT 59.072 36.000 0.00 0.00 37.68 1.82
2730 2758 4.159135 CCATTTAGCTTCAGGAACATGCTT 59.841 41.667 0.00 0.00 35.47 3.91
2731 2759 3.698040 CCATTTAGCTTCAGGAACATGCT 59.302 43.478 0.00 0.00 37.72 3.79
2791 2819 4.382040 CGACCAACTGACCATCTAATGAGT 60.382 45.833 0.00 0.00 0.00 3.41
2792 2820 4.115516 CGACCAACTGACCATCTAATGAG 58.884 47.826 0.00 0.00 0.00 2.90
2793 2821 3.678806 GCGACCAACTGACCATCTAATGA 60.679 47.826 0.00 0.00 0.00 2.57
2794 2822 2.609459 GCGACCAACTGACCATCTAATG 59.391 50.000 0.00 0.00 0.00 1.90
2795 2823 2.501723 AGCGACCAACTGACCATCTAAT 59.498 45.455 0.00 0.00 0.00 1.73
2807 2842 2.311124 AGGTAAGCATAGCGACCAAC 57.689 50.000 15.32 0.00 40.32 3.77
2820 2855 3.873952 GGATGCTAACTGCTGAAGGTAAG 59.126 47.826 0.00 0.00 43.37 2.34
2859 2894 2.638480 TACATCCACATTGCCTAGGC 57.362 50.000 27.71 27.71 42.35 3.93
2905 2940 7.941238 AGAAAACTTTCTCCATTCTCTTGATGA 59.059 33.333 0.00 0.00 43.72 2.92
2917 2952 5.001232 CGATGGGTTAGAAAACTTTCTCCA 58.999 41.667 7.96 10.01 43.72 3.86
2924 2959 3.671716 GGTGACGATGGGTTAGAAAACT 58.328 45.455 0.00 0.00 35.81 2.66
2964 2999 1.411041 AGCCAGATAACCGGTCTACC 58.589 55.000 8.04 0.00 0.00 3.18
2985 3020 1.028905 CTTTTGTCGGGACCTTTGCA 58.971 50.000 0.00 0.00 0.00 4.08
3138 3173 9.396022 GATTCACCATAGTCCAGAGAATTTAAA 57.604 33.333 0.00 0.00 0.00 1.52
3148 3183 3.963374 TCCAGAGATTCACCATAGTCCAG 59.037 47.826 0.00 0.00 0.00 3.86
3156 3191 3.646534 TGATAGCTCCAGAGATTCACCA 58.353 45.455 0.00 0.00 0.00 4.17
3158 3193 5.465532 TGATGATAGCTCCAGAGATTCAC 57.534 43.478 0.00 0.00 0.00 3.18
3166 3201 5.057819 GGATGCATATGATGATAGCTCCAG 58.942 45.833 6.97 0.00 0.00 3.86
3168 3203 5.293319 AGGATGCATATGATGATAGCTCC 57.707 43.478 6.97 0.00 0.00 4.70
3171 3206 5.434408 TCCAAGGATGCATATGATGATAGC 58.566 41.667 6.97 0.00 0.00 2.97
3256 3291 2.798976 TCAATGTCCAGCTTGCAAAC 57.201 45.000 0.00 0.00 0.00 2.93
3318 3353 4.768448 ACATCCTTCTGCATTCATGTGAAA 59.232 37.500 0.00 0.00 37.61 2.69
3322 3357 5.363562 TCTACATCCTTCTGCATTCATGT 57.636 39.130 0.00 0.00 0.00 3.21
3324 3359 4.820716 GCTTCTACATCCTTCTGCATTCAT 59.179 41.667 0.00 0.00 0.00 2.57
3351 3386 3.625764 GCTCTAGTCTCAGTCGTCTCATT 59.374 47.826 0.00 0.00 0.00 2.57
3414 3449 0.237235 TCTGTTTCGCGTCAATTGCC 59.763 50.000 5.77 0.00 0.00 4.52
3418 3453 1.878953 ACCTTCTGTTTCGCGTCAAT 58.121 45.000 5.77 0.00 0.00 2.57
3444 3479 9.159254 ACTCAGGTCCATCTATTTTCATGTATA 57.841 33.333 0.00 0.00 0.00 1.47
3445 3480 8.038862 ACTCAGGTCCATCTATTTTCATGTAT 57.961 34.615 0.00 0.00 0.00 2.29
3452 3487 8.019656 ACGTTATACTCAGGTCCATCTATTTT 57.980 34.615 0.00 0.00 0.00 1.82
3475 3510 1.459592 CGGTTTAGGAACTGCTTGACG 59.540 52.381 0.00 0.00 41.52 4.35
3635 3672 2.305127 CGCAGCTTTGCACTTTGCC 61.305 57.895 0.00 0.00 44.23 4.52
3710 3747 1.171308 TTGCCTTGCATTCTGCTCTC 58.829 50.000 0.34 0.00 45.31 3.20
3722 3759 1.441016 GAACTCGCGCTTTGCCTTG 60.441 57.895 5.56 0.00 42.08 3.61
3772 3809 1.046204 GGAATACCTCCTGTACCGGG 58.954 60.000 6.32 0.00 41.61 5.73
3815 3852 2.162408 GAGTGCCCTGTCAAACTTATGC 59.838 50.000 0.00 0.00 0.00 3.14
3937 3974 5.948992 ATTTACCTCTTGCTGAAACTGTC 57.051 39.130 0.00 0.00 0.00 3.51
3962 3999 9.632638 AGGTCTTATGATTTGTAATGCTGTATT 57.367 29.630 0.00 0.00 0.00 1.89
3980 4017 9.765795 GTAACTGCATAACTATGAAGGTCTTAT 57.234 33.333 9.15 0.00 42.56 1.73
4009 4046 9.177608 CCCTGAATAGACTGACAAATAATGAAA 57.822 33.333 0.00 0.00 0.00 2.69
4051 4088 9.099454 GGTGTTTATATGGCTCTAGTAATATGC 57.901 37.037 0.00 0.00 0.00 3.14
4069 4343 7.293073 AGAGAAGGAATATGCATGGTGTTTAT 58.707 34.615 10.16 0.00 0.00 1.40
4082 4356 9.920946 TTATTGCCAGTAAAAGAGAAGGAATAT 57.079 29.630 0.00 0.00 0.00 1.28
4083 4357 9.747898 TTTATTGCCAGTAAAAGAGAAGGAATA 57.252 29.630 0.00 0.00 0.00 1.75
4113 4387 0.035152 TGCTTCCTGATGCCGAACAT 60.035 50.000 2.98 0.00 43.54 2.71
4114 4388 0.674581 CTGCTTCCTGATGCCGAACA 60.675 55.000 2.98 0.00 0.00 3.18
4119 4393 0.813821 GAAACCTGCTTCCTGATGCC 59.186 55.000 2.98 0.00 0.00 4.40
4120 4394 1.831580 AGAAACCTGCTTCCTGATGC 58.168 50.000 0.00 0.00 0.00 3.91
4156 4431 7.472334 AAGGAGTCAGTCGGTAAATTAGTTA 57.528 36.000 0.00 0.00 0.00 2.24
4158 4433 5.997384 AAGGAGTCAGTCGGTAAATTAGT 57.003 39.130 0.00 0.00 0.00 2.24
4161 4436 4.466726 AGCTAAGGAGTCAGTCGGTAAATT 59.533 41.667 0.00 0.00 0.00 1.82
4167 4442 0.179124 GCAGCTAAGGAGTCAGTCGG 60.179 60.000 0.00 0.00 0.00 4.79
4169 4444 2.977772 ATGCAGCTAAGGAGTCAGTC 57.022 50.000 0.00 0.00 0.00 3.51
4171 4446 5.181748 AGTAAAATGCAGCTAAGGAGTCAG 58.818 41.667 0.00 0.00 0.00 3.51
4175 4450 6.914757 GCATAAAGTAAAATGCAGCTAAGGAG 59.085 38.462 0.00 0.00 46.19 3.69
4192 4467 5.664294 TCATGGCTTCATTTGCATAAAGT 57.336 34.783 0.00 0.00 0.00 2.66
4193 4468 6.277605 TGATCATGGCTTCATTTGCATAAAG 58.722 36.000 0.00 0.00 0.00 1.85
4194 4469 6.223351 TGATCATGGCTTCATTTGCATAAA 57.777 33.333 0.00 0.00 0.00 1.40
4235 4516 7.452880 TGCTAAGTATTTCAATCTGCAAAGT 57.547 32.000 0.00 0.00 0.00 2.66
4315 4596 2.651455 TCCATGTACTCGTAGACCAGG 58.349 52.381 0.00 0.00 0.00 4.45
4321 4602 5.428496 TTCCGTAATCCATGTACTCGTAG 57.572 43.478 0.00 0.00 0.00 3.51
4336 4617 1.772836 GGTCCTCTAGGCTTCCGTAA 58.227 55.000 0.00 0.00 34.44 3.18
4492 4773 1.348064 TGTGGTCGAGGAGGATGTTT 58.652 50.000 0.00 0.00 0.00 2.83
4621 4902 0.409876 TCTGCTGGTACTCAGGGTCT 59.590 55.000 11.72 0.00 43.54 3.85
4660 4941 2.545526 TCCGAACGAGTATATGTCGGAC 59.454 50.000 8.92 0.00 42.32 4.79
4681 4962 1.210538 TGATCTGGAGCAGCAGGATT 58.789 50.000 0.00 0.00 0.00 3.01
4777 5058 2.203379 TCTGTCACCGTCGGGTCA 60.203 61.111 17.28 10.29 46.01 4.02
4804 5085 1.003233 GAACGCCAAGGCCTCTTCT 60.003 57.895 5.23 0.00 37.98 2.85
4823 5104 3.631487 ATTTCAAAGCCAGCCGCGC 62.631 57.895 0.00 0.00 44.76 6.86
4827 5108 1.010419 CGCACATTTCAAAGCCAGCC 61.010 55.000 0.00 0.00 0.00 4.85
5129 5414 6.736110 TCCATGTTCATATCATCTCAGTCA 57.264 37.500 0.00 0.00 0.00 3.41
5134 5419 6.812879 TGCAATCCATGTTCATATCATCTC 57.187 37.500 0.00 0.00 0.00 2.75
5169 5454 4.681781 CGAGACTATGTTGGCCTCTTCATT 60.682 45.833 3.32 0.00 0.00 2.57
5257 5542 8.220917 TGTATGTTACACACAAGCATTGCCTC 62.221 42.308 4.70 0.00 41.31 4.70
5403 9651 3.441222 TCATAACCGCTAACTCTTCGTCA 59.559 43.478 0.00 0.00 0.00 4.35
5530 9778 8.758633 ACCTTATGCATATCTCGTTTACATAC 57.241 34.615 7.36 0.00 0.00 2.39
5653 9961 7.863877 GGATTTACACGGTGTTACATTTTCTTT 59.136 33.333 20.15 0.00 0.00 2.52
5672 9980 3.509575 TGTTCATGGGCAACTGGATTTAC 59.490 43.478 0.00 0.00 0.00 2.01
5701 10009 0.391597 TGGTTCTGTGGTCTTCGGTC 59.608 55.000 0.00 0.00 0.00 4.79
5734 10047 2.040544 CGCATGGTTCCACTCCACC 61.041 63.158 0.00 0.00 37.81 4.61
5735 10048 2.690778 GCGCATGGTTCCACTCCAC 61.691 63.158 0.30 0.00 37.81 4.02
5736 10049 2.359850 GCGCATGGTTCCACTCCA 60.360 61.111 0.30 0.00 39.41 3.86
5737 10050 2.045926 AGCGCATGGTTCCACTCC 60.046 61.111 11.47 0.00 0.00 3.85
5738 10051 1.375908 TGAGCGCATGGTTCCACTC 60.376 57.895 11.47 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.