Multiple sequence alignment - TraesCS6A01G182600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G182600 chr6A 100.000 4931 0 0 1 4931 210951367 210946437 0.000000e+00 9106.0
1 TraesCS6A01G182600 chr6A 89.032 465 37 8 533 987 404633504 404633044 9.270000e-157 564.0
2 TraesCS6A01G182600 chr6A 98.315 178 3 0 1834 2011 210949481 210949304 3.710000e-81 313.0
3 TraesCS6A01G182600 chr6A 98.315 178 3 0 1887 2064 210949534 210949357 3.710000e-81 313.0
4 TraesCS6A01G182600 chr6A 97.600 125 3 0 1834 1958 210949428 210949304 1.080000e-51 215.0
5 TraesCS6A01G182600 chr6A 97.600 125 3 0 1940 2064 210949534 210949410 1.080000e-51 215.0
6 TraesCS6A01G182600 chr6A 96.203 79 2 1 1828 1905 210949382 210949304 1.440000e-25 128.0
7 TraesCS6A01G182600 chr6A 96.203 79 2 1 1986 2064 210949540 210949463 1.440000e-25 128.0
8 TraesCS6A01G182600 chr6A 100.000 41 0 0 1019 1059 210950308 210950268 5.290000e-10 76.8
9 TraesCS6A01G182600 chr6A 100.000 41 0 0 1060 1100 210950349 210950309 5.290000e-10 76.8
10 TraesCS6A01G182600 chr6D 96.283 1883 37 8 1934 3785 158232032 158230152 0.000000e+00 3059.0
11 TraesCS6A01G182600 chr6D 95.035 1007 10 9 967 1958 158232884 158231903 0.000000e+00 1546.0
12 TraesCS6A01G182600 chr6D 86.613 1113 96 23 3791 4865 416447325 416448422 0.000000e+00 1181.0
13 TraesCS6A01G182600 chr6D 85.324 1172 110 24 3741 4865 415440563 415441719 0.000000e+00 1155.0
14 TraesCS6A01G182600 chr6D 87.037 810 65 18 4144 4929 158229708 158228915 0.000000e+00 878.0
15 TraesCS6A01G182600 chr6D 90.071 423 24 6 3758 4162 158230143 158229721 2.610000e-147 532.0
16 TraesCS6A01G182600 chr6D 96.947 131 3 1 1881 2011 158232032 158231903 8.310000e-53 219.0
17 TraesCS6A01G182600 chr6D 97.436 78 1 1 1986 2063 158232033 158231957 1.110000e-26 132.0
18 TraesCS6A01G182600 chr6D 86.441 118 10 2 3741 3852 166763921 166764038 1.860000e-24 124.0
19 TraesCS6A01G182600 chr6D 97.222 72 2 0 1834 1905 158231974 158231903 6.700000e-24 122.0
20 TraesCS6A01G182600 chr6D 100.000 54 0 0 1060 1113 158232830 158232777 3.140000e-17 100.0
21 TraesCS6A01G182600 chr6D 100.000 41 0 0 1019 1059 158232777 158232737 5.290000e-10 76.8
22 TraesCS6A01G182600 chr4A 88.231 1283 90 24 1934 3193 336017603 336018847 0.000000e+00 1476.0
23 TraesCS6A01G182600 chr4A 96.164 782 26 4 1176 1955 336016950 336017729 0.000000e+00 1275.0
24 TraesCS6A01G182600 chr4A 82.516 1081 115 42 3895 4921 211325860 211324800 0.000000e+00 881.0
25 TraesCS6A01G182600 chr4A 93.827 567 16 5 3184 3737 336022992 336023552 0.000000e+00 835.0
26 TraesCS6A01G182600 chr4A 94.937 79 3 1 1986 2064 336017602 336017679 6.700000e-24 122.0
27 TraesCS6A01G182600 chr4B 96.487 854 21 4 1060 1904 250704817 250705670 0.000000e+00 1402.0
28 TraesCS6A01G182600 chr4B 93.096 898 45 5 1986 2867 250705594 250706490 0.000000e+00 1299.0
29 TraesCS6A01G182600 chr4B 95.290 552 11 3 3198 3737 250707012 250707560 0.000000e+00 861.0
30 TraesCS6A01G182600 chr4B 89.056 466 38 7 533 988 529837592 529837130 2.580000e-157 566.0
31 TraesCS6A01G182600 chr4B 95.677 347 3 2 2865 3199 250706572 250706918 9.330000e-152 547.0
32 TraesCS6A01G182600 chr4B 87.500 144 8 5 281 422 250704640 250704775 1.840000e-34 158.0
33 TraesCS6A01G182600 chr4B 98.630 73 1 0 987 1059 250704785 250704857 4.010000e-26 130.0
34 TraesCS6A01G182600 chr2D 84.384 1031 123 27 3886 4897 55401740 55400729 0.000000e+00 977.0
35 TraesCS6A01G182600 chr2D 88.817 465 39 7 533 987 632465959 632465498 4.310000e-155 558.0
36 TraesCS6A01G182600 chr7A 81.661 1096 131 45 3886 4921 545658359 545657274 0.000000e+00 846.0
37 TraesCS6A01G182600 chr7A 83.449 719 86 24 4229 4922 690252434 690253144 5.380000e-179 638.0
38 TraesCS6A01G182600 chr7A 85.879 347 43 4 3886 4229 690252048 690252391 1.010000e-96 364.0
39 TraesCS6A01G182600 chr7A 85.920 348 39 6 3887 4232 143142023 143141684 3.630000e-96 363.0
40 TraesCS6A01G182600 chr7A 92.793 222 16 0 1 222 95815882 95815661 6.160000e-84 322.0
41 TraesCS6A01G182600 chr7A 90.254 236 23 0 1 236 543359184 543359419 4.790000e-80 309.0
42 TraesCS6A01G182600 chr5D 83.543 717 87 23 4229 4918 48668213 48668925 4.160000e-180 641.0
43 TraesCS6A01G182600 chr5D 83.283 329 34 16 3859 4177 558282352 558282669 2.910000e-72 283.0
44 TraesCS6A01G182600 chr5D 91.579 95 7 1 3758 3852 121033709 121033616 4.010000e-26 130.0
45 TraesCS6A01G182600 chr5A 83.171 719 94 24 4229 4925 503766061 503765348 2.500000e-177 632.0
46 TraesCS6A01G182600 chr5A 92.727 220 16 0 1 220 566617082 566616863 7.970000e-83 318.0
47 TraesCS6A01G182600 chr5A 89.024 82 7 2 4171 4250 2831250 2831169 3.140000e-17 100.0
48 TraesCS6A01G182600 chr5B 83.148 718 88 25 4229 4918 215896828 215896116 4.190000e-175 625.0
49 TraesCS6A01G182600 chr5B 90.000 460 38 5 533 987 604227426 604227882 5.500000e-164 588.0
50 TraesCS6A01G182600 chr5B 89.744 468 34 6 533 989 61558515 61558979 1.980000e-163 586.0
51 TraesCS6A01G182600 chr5B 89.565 460 40 4 533 987 600116265 600115809 1.190000e-160 577.0
52 TraesCS6A01G182600 chr1B 83.032 719 88 26 4229 4918 250407631 250406918 5.420000e-174 621.0
53 TraesCS6A01G182600 chr1B 90.000 470 32 6 529 987 108867095 108867560 1.180000e-165 593.0
54 TraesCS6A01G182600 chr1B 89.440 464 37 8 533 987 20692580 20693040 4.280000e-160 575.0
55 TraesCS6A01G182600 chrUn 83.058 667 71 28 4230 4884 75823671 75824307 7.160000e-158 568.0
56 TraesCS6A01G182600 chr6B 88.865 467 38 8 532 989 51740297 51740758 3.330000e-156 562.0
57 TraesCS6A01G182600 chr6B 87.611 113 10 1 3744 3852 380549650 380549538 1.440000e-25 128.0
58 TraesCS6A01G182600 chr7B 87.179 351 34 7 3886 4229 741947131 741947477 5.990000e-104 388.0
59 TraesCS6A01G182600 chr3A 86.494 348 42 4 3886 4229 459068756 459069102 1.300000e-100 377.0
60 TraesCS6A01G182600 chr3A 92.727 220 16 0 1 220 10597882 10597663 7.970000e-83 318.0
61 TraesCS6A01G182600 chr3A 92.727 220 15 1 1 220 16702962 16702744 2.860000e-82 316.0
62 TraesCS6A01G182600 chr3A 92.342 222 17 0 1 222 243868434 243868213 2.860000e-82 316.0
63 TraesCS6A01G182600 chr3A 91.630 227 18 1 1 226 16668385 16668159 3.710000e-81 313.0
64 TraesCS6A01G182600 chr3A 87.719 114 9 1 3744 3852 80136453 80136340 1.440000e-25 128.0
65 TraesCS6A01G182600 chr1A 92.793 222 16 0 1 222 41374068 41374289 6.160000e-84 322.0
66 TraesCS6A01G182600 chr2A 92.342 222 16 1 1 222 709100603 709100383 1.030000e-81 315.0
67 TraesCS6A01G182600 chr3B 78.507 335 40 21 3862 4177 28698055 28697734 1.810000e-44 191.0
68 TraesCS6A01G182600 chr3D 90.526 95 9 0 3758 3852 68044448 68044542 5.180000e-25 126.0
69 TraesCS6A01G182600 chr3D 90.323 93 8 1 3760 3852 598386834 598386925 2.410000e-23 121.0
70 TraesCS6A01G182600 chr1D 79.121 91 19 0 1611 1701 449319759 449319669 4.120000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G182600 chr6A 210946437 210951367 4930 True 1174.622222 9106 98.248444 1 4931 9 chr6A.!!$R2 4930
1 TraesCS6A01G182600 chr6D 416447325 416448422 1097 False 1181.000000 1181 86.613000 3791 4865 1 chr6D.!!$F3 1074
2 TraesCS6A01G182600 chr6D 415440563 415441719 1156 False 1155.000000 1155 85.324000 3741 4865 1 chr6D.!!$F2 1124
3 TraesCS6A01G182600 chr6D 158228915 158232884 3969 True 740.533333 3059 95.559000 967 4929 9 chr6D.!!$R1 3962
4 TraesCS6A01G182600 chr4A 336016950 336018847 1897 False 957.666667 1476 93.110667 1176 3193 3 chr4A.!!$F2 2017
5 TraesCS6A01G182600 chr4A 211324800 211325860 1060 True 881.000000 881 82.516000 3895 4921 1 chr4A.!!$R1 1026
6 TraesCS6A01G182600 chr4A 336022992 336023552 560 False 835.000000 835 93.827000 3184 3737 1 chr4A.!!$F1 553
7 TraesCS6A01G182600 chr4B 250704640 250707560 2920 False 732.833333 1402 94.446667 281 3737 6 chr4B.!!$F1 3456
8 TraesCS6A01G182600 chr2D 55400729 55401740 1011 True 977.000000 977 84.384000 3886 4897 1 chr2D.!!$R1 1011
9 TraesCS6A01G182600 chr7A 545657274 545658359 1085 True 846.000000 846 81.661000 3886 4921 1 chr7A.!!$R3 1035
10 TraesCS6A01G182600 chr7A 690252048 690253144 1096 False 501.000000 638 84.664000 3886 4922 2 chr7A.!!$F2 1036
11 TraesCS6A01G182600 chr5D 48668213 48668925 712 False 641.000000 641 83.543000 4229 4918 1 chr5D.!!$F1 689
12 TraesCS6A01G182600 chr5A 503765348 503766061 713 True 632.000000 632 83.171000 4229 4925 1 chr5A.!!$R2 696
13 TraesCS6A01G182600 chr5B 215896116 215896828 712 True 625.000000 625 83.148000 4229 4918 1 chr5B.!!$R1 689
14 TraesCS6A01G182600 chr1B 250406918 250407631 713 True 621.000000 621 83.032000 4229 4918 1 chr1B.!!$R1 689
15 TraesCS6A01G182600 chrUn 75823671 75824307 636 False 568.000000 568 83.058000 4230 4884 1 chrUn.!!$F1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 752 0.033601 TTTCAGTGTGTTGGGCTGGT 60.034 50.000 0.00 0.00 0.00 4.00 F
1639 1686 0.812811 CCTCTCCATGTGCACCATCG 60.813 60.000 15.69 1.08 0.00 3.84 F
1992 2042 0.035630 AATGAGCTCAGGAGTGGTGC 60.036 55.000 22.96 0.00 0.00 5.01 F
2044 2094 0.393537 GAATGAGCTCAGGGGTGGTG 60.394 60.000 22.96 0.00 0.00 4.17 F
2271 2322 1.589716 GAACGGCTGGAATTGCTGCT 61.590 55.000 24.01 8.48 40.21 4.24 F
3737 4015 3.380004 CGGGCCTGAGTTGCATTTATTTA 59.620 43.478 5.28 0.00 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2023 0.035630 GCACCACTCCTGAGCTCATT 60.036 55.000 18.63 0.00 0.00 2.57 R
2792 2858 3.003689 AGACTTCTCAAAATGTTGGTGCG 59.996 43.478 0.00 0.00 35.29 5.34 R
3738 4016 0.027979 CAACGCACGGGCATGATTAG 59.972 55.000 11.77 0.00 41.24 1.73 R
3830 4149 0.792640 CATGGCGAGTCACTGTGTTC 59.207 55.000 7.79 6.37 0.00 3.18 R
4086 4424 2.689785 CGGCCCGTAGTACGTGACA 61.690 63.158 20.60 0.00 40.58 3.58 R
4884 5412 1.279271 ACAGCCTGTCTAATCCACCAC 59.721 52.381 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.642700 GGCTCTTCGCGCCAAAAA 59.357 55.556 0.00 0.00 46.77 1.94
36 37 1.729484 GGCTCTTCGCGCCAAAAAC 60.729 57.895 0.00 0.00 46.77 2.43
37 38 2.074920 GCTCTTCGCGCCAAAAACG 61.075 57.895 0.00 0.00 0.00 3.60
38 39 1.567537 CTCTTCGCGCCAAAAACGA 59.432 52.632 0.00 0.00 0.00 3.85
39 40 0.165944 CTCTTCGCGCCAAAAACGAT 59.834 50.000 0.00 0.00 35.48 3.73
40 41 0.589223 TCTTCGCGCCAAAAACGATT 59.411 45.000 0.00 0.00 35.48 3.34
41 42 1.002251 TCTTCGCGCCAAAAACGATTT 60.002 42.857 0.00 0.00 35.48 2.17
42 43 1.122323 CTTCGCGCCAAAAACGATTTG 59.878 47.619 0.00 10.22 35.48 2.32
47 48 2.820986 CCAAAAACGATTTGGCCGG 58.179 52.632 19.29 0.00 41.95 6.13
48 49 1.288419 CCAAAAACGATTTGGCCGGC 61.288 55.000 21.18 21.18 41.95 6.13
49 50 1.372375 AAAAACGATTTGGCCGGCG 60.372 52.632 22.54 7.92 0.00 6.46
50 51 3.907481 AAAACGATTTGGCCGGCGC 62.907 57.895 22.54 14.37 0.00 6.53
126 127 3.788766 CCGAGCCGGCGAAAACTG 61.789 66.667 23.20 6.69 41.17 3.16
127 128 3.788766 CGAGCCGGCGAAAACTGG 61.789 66.667 23.20 0.00 39.28 4.00
128 129 3.431725 GAGCCGGCGAAAACTGGG 61.432 66.667 23.20 0.00 36.51 4.45
131 132 3.431725 CCGGCGAAAACTGGGCTC 61.432 66.667 9.30 0.00 31.89 4.70
132 133 2.358737 CGGCGAAAACTGGGCTCT 60.359 61.111 0.00 0.00 0.00 4.09
133 134 1.966451 CGGCGAAAACTGGGCTCTT 60.966 57.895 0.00 0.00 0.00 2.85
134 135 1.581447 GGCGAAAACTGGGCTCTTG 59.419 57.895 0.00 0.00 0.00 3.02
135 136 1.581447 GCGAAAACTGGGCTCTTGG 59.419 57.895 0.00 0.00 0.00 3.61
136 137 1.866853 GCGAAAACTGGGCTCTTGGG 61.867 60.000 0.00 0.00 0.00 4.12
137 138 1.244019 CGAAAACTGGGCTCTTGGGG 61.244 60.000 0.00 0.00 0.00 4.96
138 139 0.900182 GAAAACTGGGCTCTTGGGGG 60.900 60.000 0.00 0.00 0.00 5.40
139 140 3.529835 AAACTGGGCTCTTGGGGGC 62.530 63.158 0.00 0.00 0.00 5.80
156 157 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
157 158 2.686816 CGCGACTGGGCCGATTTTT 61.687 57.895 0.00 0.00 0.00 1.94
171 172 3.321967 TTTTTGACGCCGACGGAC 58.678 55.556 20.50 8.22 46.04 4.79
172 173 2.587679 TTTTTGACGCCGACGGACG 61.588 57.895 20.50 22.06 46.04 4.79
173 174 2.950565 TTTTTGACGCCGACGGACGA 62.951 55.000 28.68 13.01 46.04 4.20
174 175 2.950565 TTTTGACGCCGACGGACGAA 62.951 55.000 28.68 17.15 46.04 3.85
175 176 2.950565 TTTGACGCCGACGGACGAAA 62.951 55.000 28.68 20.73 46.04 3.46
176 177 2.730604 GACGCCGACGGACGAAAA 60.731 61.111 28.68 0.00 46.04 2.29
177 178 2.279385 ACGCCGACGGACGAAAAA 60.279 55.556 28.68 0.00 46.04 1.94
192 193 3.946242 AAAAACACCTGGGAAGCCT 57.054 47.368 0.00 0.00 0.00 4.58
193 194 2.174685 AAAAACACCTGGGAAGCCTT 57.825 45.000 0.00 0.00 0.00 4.35
194 195 1.704641 AAAACACCTGGGAAGCCTTC 58.295 50.000 0.00 0.00 0.00 3.46
195 196 0.853530 AAACACCTGGGAAGCCTTCT 59.146 50.000 4.15 0.00 0.00 2.85
196 197 0.853530 AACACCTGGGAAGCCTTCTT 59.146 50.000 4.15 0.00 34.68 2.52
197 198 0.111253 ACACCTGGGAAGCCTTCTTG 59.889 55.000 4.15 0.00 31.48 3.02
198 199 0.610232 CACCTGGGAAGCCTTCTTGG 60.610 60.000 4.15 6.85 39.35 3.61
199 200 1.000396 CCTGGGAAGCCTTCTTGGG 60.000 63.158 4.15 0.63 36.00 4.12
200 201 1.000396 CTGGGAAGCCTTCTTGGGG 60.000 63.158 4.15 0.00 36.00 4.96
201 202 2.360585 GGGAAGCCTTCTTGGGGG 59.639 66.667 4.15 0.00 36.00 5.40
219 220 3.461773 CGTGGCCGGAGATGTCCT 61.462 66.667 5.05 0.00 41.34 3.85
220 221 2.990479 GTGGCCGGAGATGTCCTT 59.010 61.111 5.05 0.00 41.34 3.36
221 222 1.672854 CGTGGCCGGAGATGTCCTTA 61.673 60.000 5.05 0.00 41.34 2.69
222 223 0.759346 GTGGCCGGAGATGTCCTTAT 59.241 55.000 5.05 0.00 41.34 1.73
223 224 1.048601 TGGCCGGAGATGTCCTTATC 58.951 55.000 5.05 0.00 41.34 1.75
224 225 0.038159 GGCCGGAGATGTCCTTATCG 60.038 60.000 5.05 0.00 41.34 2.92
225 226 0.674534 GCCGGAGATGTCCTTATCGT 59.325 55.000 5.05 0.00 41.34 3.73
226 227 1.884579 GCCGGAGATGTCCTTATCGTA 59.115 52.381 5.05 0.00 41.34 3.43
227 228 2.351544 GCCGGAGATGTCCTTATCGTAC 60.352 54.545 5.05 0.00 41.34 3.67
228 229 3.147629 CCGGAGATGTCCTTATCGTACT 58.852 50.000 7.39 0.00 41.34 2.73
229 230 3.058155 CCGGAGATGTCCTTATCGTACTG 60.058 52.174 7.39 0.00 41.34 2.74
230 231 3.813724 CGGAGATGTCCTTATCGTACTGA 59.186 47.826 7.39 0.00 41.34 3.41
231 232 4.275196 CGGAGATGTCCTTATCGTACTGAA 59.725 45.833 7.39 0.00 41.34 3.02
232 233 5.561145 CGGAGATGTCCTTATCGTACTGAAG 60.561 48.000 7.39 0.00 41.34 3.02
233 234 5.299782 GGAGATGTCCTTATCGTACTGAAGT 59.700 44.000 0.54 0.00 40.17 3.01
234 235 6.183360 GGAGATGTCCTTATCGTACTGAAGTT 60.183 42.308 0.54 0.00 40.17 2.66
235 236 6.565234 AGATGTCCTTATCGTACTGAAGTTG 58.435 40.000 0.00 0.00 32.33 3.16
236 237 4.491676 TGTCCTTATCGTACTGAAGTTGC 58.508 43.478 0.00 0.00 0.00 4.17
237 238 4.021807 TGTCCTTATCGTACTGAAGTTGCA 60.022 41.667 0.00 0.00 0.00 4.08
238 239 5.109903 GTCCTTATCGTACTGAAGTTGCAT 58.890 41.667 0.00 0.00 0.00 3.96
239 240 5.581085 GTCCTTATCGTACTGAAGTTGCATT 59.419 40.000 0.00 0.00 0.00 3.56
240 241 6.755141 GTCCTTATCGTACTGAAGTTGCATTA 59.245 38.462 0.00 0.00 0.00 1.90
241 242 7.438459 GTCCTTATCGTACTGAAGTTGCATTAT 59.562 37.037 0.00 0.00 0.00 1.28
242 243 7.652105 TCCTTATCGTACTGAAGTTGCATTATC 59.348 37.037 0.00 0.00 0.00 1.75
243 244 7.095607 CCTTATCGTACTGAAGTTGCATTATCC 60.096 40.741 0.00 0.00 0.00 2.59
244 245 5.079689 TCGTACTGAAGTTGCATTATCCA 57.920 39.130 0.00 0.00 0.00 3.41
245 246 5.670485 TCGTACTGAAGTTGCATTATCCAT 58.330 37.500 0.00 0.00 0.00 3.41
246 247 5.523552 TCGTACTGAAGTTGCATTATCCATG 59.476 40.000 0.00 0.00 35.73 3.66
247 248 5.294306 CGTACTGAAGTTGCATTATCCATGT 59.706 40.000 0.00 0.00 34.98 3.21
248 249 5.824904 ACTGAAGTTGCATTATCCATGTC 57.175 39.130 0.00 0.00 34.98 3.06
249 250 5.503927 ACTGAAGTTGCATTATCCATGTCT 58.496 37.500 0.00 0.00 34.98 3.41
250 251 5.356190 ACTGAAGTTGCATTATCCATGTCTG 59.644 40.000 0.00 0.00 34.98 3.51
251 252 5.255687 TGAAGTTGCATTATCCATGTCTGT 58.744 37.500 0.00 0.00 34.98 3.41
252 253 5.355071 TGAAGTTGCATTATCCATGTCTGTC 59.645 40.000 0.00 0.00 34.98 3.51
253 254 4.202441 AGTTGCATTATCCATGTCTGTCC 58.798 43.478 0.00 0.00 34.98 4.02
254 255 4.080129 AGTTGCATTATCCATGTCTGTCCT 60.080 41.667 0.00 0.00 34.98 3.85
255 256 4.508551 TGCATTATCCATGTCTGTCCTT 57.491 40.909 0.00 0.00 34.98 3.36
256 257 4.201657 TGCATTATCCATGTCTGTCCTTG 58.798 43.478 0.00 0.00 34.98 3.61
257 258 4.202441 GCATTATCCATGTCTGTCCTTGT 58.798 43.478 0.00 0.00 34.98 3.16
258 259 4.641989 GCATTATCCATGTCTGTCCTTGTT 59.358 41.667 0.00 0.00 34.98 2.83
259 260 5.822519 GCATTATCCATGTCTGTCCTTGTTA 59.177 40.000 0.00 0.00 34.98 2.41
260 261 6.017605 GCATTATCCATGTCTGTCCTTGTTAG 60.018 42.308 0.00 0.00 34.98 2.34
261 262 6.867519 TTATCCATGTCTGTCCTTGTTAGA 57.132 37.500 0.00 0.00 0.00 2.10
262 263 5.762179 ATCCATGTCTGTCCTTGTTAGAA 57.238 39.130 0.00 0.00 0.00 2.10
263 264 4.894784 TCCATGTCTGTCCTTGTTAGAAC 58.105 43.478 0.00 0.00 0.00 3.01
264 265 4.593206 TCCATGTCTGTCCTTGTTAGAACT 59.407 41.667 0.00 0.00 0.00 3.01
265 266 5.778241 TCCATGTCTGTCCTTGTTAGAACTA 59.222 40.000 0.00 0.00 0.00 2.24
266 267 6.071334 TCCATGTCTGTCCTTGTTAGAACTAG 60.071 42.308 0.00 0.00 0.00 2.57
267 268 6.071334 CCATGTCTGTCCTTGTTAGAACTAGA 60.071 42.308 0.00 0.00 34.37 2.43
268 269 6.576662 TGTCTGTCCTTGTTAGAACTAGAG 57.423 41.667 0.00 0.00 34.37 2.43
269 270 6.304624 TGTCTGTCCTTGTTAGAACTAGAGA 58.695 40.000 0.00 0.00 34.37 3.10
270 271 6.948886 TGTCTGTCCTTGTTAGAACTAGAGAT 59.051 38.462 0.00 0.00 34.37 2.75
271 272 7.451877 TGTCTGTCCTTGTTAGAACTAGAGATT 59.548 37.037 0.00 0.00 34.37 2.40
272 273 8.958506 GTCTGTCCTTGTTAGAACTAGAGATTA 58.041 37.037 0.00 0.00 34.37 1.75
273 274 9.702253 TCTGTCCTTGTTAGAACTAGAGATTAT 57.298 33.333 0.00 0.00 34.37 1.28
274 275 9.743057 CTGTCCTTGTTAGAACTAGAGATTATG 57.257 37.037 0.00 0.00 34.37 1.90
275 276 8.198109 TGTCCTTGTTAGAACTAGAGATTATGC 58.802 37.037 0.00 0.00 34.37 3.14
276 277 8.417884 GTCCTTGTTAGAACTAGAGATTATGCT 58.582 37.037 0.00 0.00 34.37 3.79
277 278 8.982723 TCCTTGTTAGAACTAGAGATTATGCTT 58.017 33.333 0.00 0.00 34.37 3.91
285 286 9.487790 AGAACTAGAGATTATGCTTATTTCTGC 57.512 33.333 0.00 0.00 0.00 4.26
286 287 9.487790 GAACTAGAGATTATGCTTATTTCTGCT 57.512 33.333 0.00 0.00 0.00 4.24
287 288 9.844257 AACTAGAGATTATGCTTATTTCTGCTT 57.156 29.630 0.00 0.00 0.00 3.91
344 345 8.753175 GTCTCAAAATATAAGACGATGGTACAC 58.247 37.037 0.00 0.00 33.51 2.90
367 368 6.648725 CACACTTTTTCCTTCAAAGAAAACCA 59.351 34.615 0.00 0.00 41.59 3.67
422 424 3.678548 AGAATAGGAGTTTTGCGACGAAC 59.321 43.478 0.00 0.00 0.00 3.95
423 425 2.806608 TAGGAGTTTTGCGACGAACT 57.193 45.000 0.00 0.00 38.72 3.01
424 426 1.949465 AGGAGTTTTGCGACGAACTT 58.051 45.000 0.00 0.00 36.31 2.66
425 427 3.102052 AGGAGTTTTGCGACGAACTTA 57.898 42.857 0.00 0.00 36.31 2.24
426 428 3.660865 AGGAGTTTTGCGACGAACTTAT 58.339 40.909 0.00 0.00 36.31 1.73
428 430 3.430895 GGAGTTTTGCGACGAACTTATCA 59.569 43.478 0.00 0.00 36.31 2.15
429 431 4.383679 GAGTTTTGCGACGAACTTATCAC 58.616 43.478 0.00 0.00 36.31 3.06
430 432 3.805422 AGTTTTGCGACGAACTTATCACA 59.195 39.130 0.00 0.00 32.43 3.58
431 433 4.271533 AGTTTTGCGACGAACTTATCACAA 59.728 37.500 0.00 0.00 32.43 3.33
432 434 4.383774 TTTGCGACGAACTTATCACAAG 57.616 40.909 0.00 0.00 0.00 3.16
433 435 3.021269 TGCGACGAACTTATCACAAGT 57.979 42.857 0.00 0.00 0.00 3.16
434 436 2.984471 TGCGACGAACTTATCACAAGTC 59.016 45.455 0.00 0.00 0.00 3.01
435 437 3.865428 CGACGAACTTATCACAAGTCG 57.135 47.619 0.00 0.83 42.65 4.18
436 438 2.026507 CGACGAACTTATCACAAGTCGC 59.973 50.000 2.26 0.00 42.25 5.19
437 439 2.984471 GACGAACTTATCACAAGTCGCA 59.016 45.455 0.00 0.00 0.00 5.10
438 440 2.729882 ACGAACTTATCACAAGTCGCAC 59.270 45.455 0.00 0.00 0.00 5.34
439 441 2.092211 CGAACTTATCACAAGTCGCACC 59.908 50.000 0.00 0.00 0.00 5.01
440 442 3.326747 GAACTTATCACAAGTCGCACCT 58.673 45.455 0.00 0.00 0.00 4.00
441 443 3.402628 ACTTATCACAAGTCGCACCTT 57.597 42.857 0.00 0.00 0.00 3.50
442 444 4.530710 ACTTATCACAAGTCGCACCTTA 57.469 40.909 0.00 0.00 0.00 2.69
443 445 4.243270 ACTTATCACAAGTCGCACCTTAC 58.757 43.478 0.00 0.00 0.00 2.34
444 446 4.021368 ACTTATCACAAGTCGCACCTTACT 60.021 41.667 0.00 0.00 0.00 2.24
445 447 2.433868 TCACAAGTCGCACCTTACTC 57.566 50.000 0.00 0.00 0.00 2.59
446 448 1.684450 TCACAAGTCGCACCTTACTCA 59.316 47.619 0.00 0.00 0.00 3.41
447 449 2.299013 TCACAAGTCGCACCTTACTCAT 59.701 45.455 0.00 0.00 0.00 2.90
448 450 3.067106 CACAAGTCGCACCTTACTCATT 58.933 45.455 0.00 0.00 0.00 2.57
449 451 3.498397 CACAAGTCGCACCTTACTCATTT 59.502 43.478 0.00 0.00 0.00 2.32
450 452 3.746492 ACAAGTCGCACCTTACTCATTTC 59.254 43.478 0.00 0.00 0.00 2.17
451 453 2.973945 AGTCGCACCTTACTCATTTCC 58.026 47.619 0.00 0.00 0.00 3.13
452 454 2.007608 GTCGCACCTTACTCATTTCCC 58.992 52.381 0.00 0.00 0.00 3.97
453 455 1.906574 TCGCACCTTACTCATTTCCCT 59.093 47.619 0.00 0.00 0.00 4.20
454 456 2.093658 TCGCACCTTACTCATTTCCCTC 60.094 50.000 0.00 0.00 0.00 4.30
455 457 2.354704 CGCACCTTACTCATTTCCCTCA 60.355 50.000 0.00 0.00 0.00 3.86
456 458 3.686016 GCACCTTACTCATTTCCCTCAA 58.314 45.455 0.00 0.00 0.00 3.02
457 459 4.079253 GCACCTTACTCATTTCCCTCAAA 58.921 43.478 0.00 0.00 0.00 2.69
458 460 4.522789 GCACCTTACTCATTTCCCTCAAAA 59.477 41.667 0.00 0.00 0.00 2.44
459 461 5.010617 GCACCTTACTCATTTCCCTCAAAAA 59.989 40.000 0.00 0.00 0.00 1.94
481 483 4.632538 AAAAGTTGCACCTTACTCACAC 57.367 40.909 0.00 0.00 0.00 3.82
482 484 1.865865 AGTTGCACCTTACTCACACG 58.134 50.000 0.00 0.00 0.00 4.49
483 485 0.865769 GTTGCACCTTACTCACACGG 59.134 55.000 0.00 0.00 0.00 4.94
484 486 0.753867 TTGCACCTTACTCACACGGA 59.246 50.000 0.00 0.00 0.00 4.69
485 487 0.973632 TGCACCTTACTCACACGGAT 59.026 50.000 0.00 0.00 0.00 4.18
486 488 1.067142 TGCACCTTACTCACACGGATC 60.067 52.381 0.00 0.00 0.00 3.36
487 489 1.909376 CACCTTACTCACACGGATCG 58.091 55.000 0.00 0.00 0.00 3.69
488 490 0.172803 ACCTTACTCACACGGATCGC 59.827 55.000 0.00 0.00 0.00 4.58
489 491 0.172578 CCTTACTCACACGGATCGCA 59.827 55.000 0.00 0.00 0.00 5.10
490 492 1.269166 CTTACTCACACGGATCGCAC 58.731 55.000 0.00 0.00 0.00 5.34
491 493 0.455464 TTACTCACACGGATCGCACG 60.455 55.000 0.00 0.00 37.36 5.34
492 494 1.579964 TACTCACACGGATCGCACGT 61.580 55.000 0.00 0.00 46.82 4.49
497 499 2.649034 ACGGATCGCACGTGACTT 59.351 55.556 22.23 1.37 43.78 3.01
498 500 1.733041 ACGGATCGCACGTGACTTG 60.733 57.895 22.23 5.42 43.78 3.16
499 501 1.733041 CGGATCGCACGTGACTTGT 60.733 57.895 22.23 0.00 0.00 3.16
500 502 1.781555 GGATCGCACGTGACTTGTG 59.218 57.895 22.23 0.00 40.32 3.33
501 503 0.944311 GGATCGCACGTGACTTGTGT 60.944 55.000 22.23 0.00 39.53 3.72
502 504 1.667756 GGATCGCACGTGACTTGTGTA 60.668 52.381 22.23 0.00 39.53 2.90
503 505 1.385743 GATCGCACGTGACTTGTGTAC 59.614 52.381 22.23 0.00 39.53 2.90
504 506 0.595567 TCGCACGTGACTTGTGTACC 60.596 55.000 22.23 0.00 39.53 3.34
505 507 0.596600 CGCACGTGACTTGTGTACCT 60.597 55.000 22.23 0.00 39.53 3.08
506 508 1.578583 GCACGTGACTTGTGTACCTT 58.421 50.000 22.23 0.00 39.53 3.50
507 509 1.937899 GCACGTGACTTGTGTACCTTT 59.062 47.619 22.23 0.00 39.53 3.11
508 510 2.353579 GCACGTGACTTGTGTACCTTTT 59.646 45.455 22.23 0.00 39.53 2.27
509 511 3.181504 GCACGTGACTTGTGTACCTTTTT 60.182 43.478 22.23 0.00 39.53 1.94
529 531 4.811555 TTTTTGAGGATCGTGACTTGTG 57.188 40.909 0.00 0.00 38.61 3.33
530 532 3.469008 TTTGAGGATCGTGACTTGTGT 57.531 42.857 0.00 0.00 38.61 3.72
531 533 4.594123 TTTGAGGATCGTGACTTGTGTA 57.406 40.909 0.00 0.00 38.61 2.90
532 534 3.570926 TGAGGATCGTGACTTGTGTAC 57.429 47.619 0.00 0.00 38.61 2.90
533 535 2.888414 TGAGGATCGTGACTTGTGTACA 59.112 45.455 0.00 0.00 38.61 2.90
534 536 3.057526 TGAGGATCGTGACTTGTGTACAG 60.058 47.826 0.00 0.00 38.61 2.74
535 537 3.154710 AGGATCGTGACTTGTGTACAGA 58.845 45.455 0.00 0.00 0.00 3.41
536 538 3.057456 AGGATCGTGACTTGTGTACAGAC 60.057 47.826 0.00 0.00 0.00 3.51
537 539 2.787601 TCGTGACTTGTGTACAGACC 57.212 50.000 0.00 0.00 0.00 3.85
538 540 2.304092 TCGTGACTTGTGTACAGACCT 58.696 47.619 0.00 0.00 0.00 3.85
539 541 2.034179 TCGTGACTTGTGTACAGACCTG 59.966 50.000 0.00 0.00 0.00 4.00
540 542 2.755650 GTGACTTGTGTACAGACCTGG 58.244 52.381 0.00 0.00 34.19 4.45
541 543 1.070134 TGACTTGTGTACAGACCTGGC 59.930 52.381 0.00 0.00 34.19 4.85
542 544 0.396811 ACTTGTGTACAGACCTGGCC 59.603 55.000 0.00 0.00 34.19 5.36
543 545 0.396435 CTTGTGTACAGACCTGGCCA 59.604 55.000 4.71 4.71 34.19 5.36
544 546 0.840617 TTGTGTACAGACCTGGCCAA 59.159 50.000 7.01 0.00 34.19 4.52
545 547 0.840617 TGTGTACAGACCTGGCCAAA 59.159 50.000 7.01 0.00 34.19 3.28
546 548 1.235724 GTGTACAGACCTGGCCAAAC 58.764 55.000 7.01 0.54 34.19 2.93
547 549 0.250124 TGTACAGACCTGGCCAAACG 60.250 55.000 7.01 0.00 34.19 3.60
548 550 0.953960 GTACAGACCTGGCCAAACGG 60.954 60.000 7.01 7.56 34.19 4.44
549 551 1.122632 TACAGACCTGGCCAAACGGA 61.123 55.000 16.13 0.00 34.19 4.69
550 552 1.966451 CAGACCTGGCCAAACGGAC 60.966 63.158 16.13 9.93 0.00 4.79
551 553 2.671963 GACCTGGCCAAACGGACC 60.672 66.667 16.13 4.10 0.00 4.46
552 554 4.636435 ACCTGGCCAAACGGACCG 62.636 66.667 16.13 13.61 0.00 4.79
554 556 4.636435 CTGGCCAAACGGACCGGT 62.636 66.667 20.00 6.92 0.00 5.28
555 557 4.629523 TGGCCAAACGGACCGGTC 62.630 66.667 27.04 27.04 0.00 4.79
586 588 3.398920 CACGGCCTGTGCTAATCG 58.601 61.111 13.44 0.00 42.70 3.34
587 589 1.447838 CACGGCCTGTGCTAATCGT 60.448 57.895 13.44 0.00 42.70 3.73
588 590 1.447838 ACGGCCTGTGCTAATCGTG 60.448 57.895 0.00 0.00 37.74 4.35
589 591 2.813179 CGGCCTGTGCTAATCGTGC 61.813 63.158 0.00 0.00 37.74 5.34
590 592 2.472909 GGCCTGTGCTAATCGTGCC 61.473 63.158 0.00 0.00 37.74 5.01
591 593 1.450312 GCCTGTGCTAATCGTGCCT 60.450 57.895 0.00 0.00 33.53 4.75
592 594 1.709147 GCCTGTGCTAATCGTGCCTG 61.709 60.000 0.00 0.00 33.53 4.85
593 595 1.091771 CCTGTGCTAATCGTGCCTGG 61.092 60.000 0.00 0.00 0.00 4.45
594 596 1.709147 CTGTGCTAATCGTGCCTGGC 61.709 60.000 12.87 12.87 0.00 4.85
595 597 1.450312 GTGCTAATCGTGCCTGGCT 60.450 57.895 21.03 0.83 0.00 4.75
596 598 1.153369 TGCTAATCGTGCCTGGCTC 60.153 57.895 21.03 15.65 0.00 4.70
597 599 2.240500 GCTAATCGTGCCTGGCTCG 61.241 63.158 30.96 30.96 45.04 5.03
598 600 1.592669 CTAATCGTGCCTGGCTCGG 60.593 63.158 34.10 19.35 44.06 4.63
621 623 4.406533 CCCACCATGGCACGTTTA 57.593 55.556 13.04 0.00 35.79 2.01
622 624 2.647356 CCCACCATGGCACGTTTAA 58.353 52.632 13.04 0.00 35.79 1.52
623 625 1.181786 CCCACCATGGCACGTTTAAT 58.818 50.000 13.04 0.00 35.79 1.40
624 626 1.135141 CCCACCATGGCACGTTTAATG 60.135 52.381 13.04 0.00 35.79 1.90
625 627 1.135141 CCACCATGGCACGTTTAATGG 60.135 52.381 13.04 15.35 44.31 3.16
626 628 0.530288 ACCATGGCACGTTTAATGGC 59.470 50.000 13.04 5.05 42.83 4.40
627 629 0.179113 CCATGGCACGTTTAATGGCC 60.179 55.000 0.00 5.43 46.58 5.36
629 631 2.487892 GGCACGTTTAATGGCCGG 59.512 61.111 0.00 0.00 36.58 6.13
630 632 2.487892 GCACGTTTAATGGCCGGG 59.512 61.111 2.18 0.00 0.00 5.73
631 633 2.487892 CACGTTTAATGGCCGGGC 59.512 61.111 23.42 23.42 0.00 6.13
672 674 4.355720 CTGCTCCTTGGCCAGGCA 62.356 66.667 15.19 15.55 43.55 4.75
673 675 4.666253 TGCTCCTTGGCCAGGCAC 62.666 66.667 15.19 3.08 43.55 5.01
686 688 3.612251 GGCACGGCCTGAGTAGTA 58.388 61.111 0.00 0.00 46.69 1.82
687 689 1.895238 GGCACGGCCTGAGTAGTAA 59.105 57.895 0.00 0.00 46.69 2.24
688 690 0.248289 GGCACGGCCTGAGTAGTAAA 59.752 55.000 0.00 0.00 46.69 2.01
689 691 1.134491 GGCACGGCCTGAGTAGTAAAT 60.134 52.381 0.00 0.00 46.69 1.40
690 692 1.933853 GCACGGCCTGAGTAGTAAATG 59.066 52.381 0.00 0.00 0.00 2.32
691 693 2.550978 CACGGCCTGAGTAGTAAATGG 58.449 52.381 0.00 0.00 0.00 3.16
692 694 1.485066 ACGGCCTGAGTAGTAAATGGG 59.515 52.381 0.00 0.00 0.00 4.00
693 695 1.810412 CGGCCTGAGTAGTAAATGGGC 60.810 57.143 0.00 0.00 37.61 5.36
694 696 1.968704 GCCTGAGTAGTAAATGGGCC 58.031 55.000 0.00 0.00 32.86 5.80
695 697 1.810412 GCCTGAGTAGTAAATGGGCCG 60.810 57.143 0.00 0.00 32.86 6.13
696 698 1.202651 CCTGAGTAGTAAATGGGCCGG 60.203 57.143 0.00 0.00 0.00 6.13
697 699 0.179468 TGAGTAGTAAATGGGCCGGC 59.821 55.000 21.18 21.18 0.00 6.13
698 700 0.534427 GAGTAGTAAATGGGCCGGCC 60.534 60.000 38.57 38.57 0.00 6.13
699 701 0.986550 AGTAGTAAATGGGCCGGCCT 60.987 55.000 42.70 27.02 36.10 5.19
700 702 0.818040 GTAGTAAATGGGCCGGCCTG 60.818 60.000 42.70 0.00 36.10 4.85
701 703 0.983905 TAGTAAATGGGCCGGCCTGA 60.984 55.000 42.70 30.21 36.10 3.86
702 704 1.152756 GTAAATGGGCCGGCCTGAT 60.153 57.895 42.70 30.99 36.10 2.90
703 705 1.152777 TAAATGGGCCGGCCTGATG 60.153 57.895 42.70 0.00 36.10 3.07
704 706 2.638981 TAAATGGGCCGGCCTGATGG 62.639 60.000 42.70 0.00 36.10 3.51
715 717 3.518766 CCTGATGGCCCATTTAGCA 57.481 52.632 0.00 0.00 0.00 3.49
716 718 1.035139 CCTGATGGCCCATTTAGCAC 58.965 55.000 0.00 0.00 0.00 4.40
717 719 0.664761 CTGATGGCCCATTTAGCACG 59.335 55.000 0.00 0.00 0.00 5.34
718 720 1.360192 GATGGCCCATTTAGCACGC 59.640 57.895 0.00 0.00 0.00 5.34
719 721 1.076777 ATGGCCCATTTAGCACGCT 60.077 52.632 0.00 0.00 0.00 5.07
720 722 1.386525 ATGGCCCATTTAGCACGCTG 61.387 55.000 0.00 0.00 0.00 5.18
721 723 2.774799 GGCCCATTTAGCACGCTGG 61.775 63.158 0.72 0.00 0.00 4.85
722 724 3.513225 CCCATTTAGCACGCTGGG 58.487 61.111 0.72 0.40 42.29 4.45
723 725 2.774799 CCCATTTAGCACGCTGGGC 61.775 63.158 0.72 0.00 41.80 5.36
724 726 1.750399 CCATTTAGCACGCTGGGCT 60.750 57.895 10.07 10.07 45.18 5.19
725 727 1.430632 CATTTAGCACGCTGGGCTG 59.569 57.895 14.30 0.00 42.62 4.85
726 728 2.409870 ATTTAGCACGCTGGGCTGC 61.410 57.895 14.30 9.91 42.62 5.25
727 729 3.841137 TTTAGCACGCTGGGCTGCA 62.841 57.895 14.30 0.00 42.62 4.41
731 733 3.367743 CACGCTGGGCTGCACATT 61.368 61.111 4.43 0.00 0.00 2.71
732 734 2.598394 ACGCTGGGCTGCACATTT 60.598 55.556 4.43 0.00 0.00 2.32
733 735 2.202395 ACGCTGGGCTGCACATTTT 61.202 52.632 4.43 0.00 0.00 1.82
734 736 1.444895 CGCTGGGCTGCACATTTTC 60.445 57.895 4.43 0.00 0.00 2.29
735 737 1.667151 GCTGGGCTGCACATTTTCA 59.333 52.632 4.43 0.00 0.00 2.69
736 738 0.389426 GCTGGGCTGCACATTTTCAG 60.389 55.000 4.43 0.00 0.00 3.02
737 739 0.963962 CTGGGCTGCACATTTTCAGT 59.036 50.000 4.43 0.00 33.09 3.41
738 740 0.675083 TGGGCTGCACATTTTCAGTG 59.325 50.000 0.00 0.00 39.92 3.66
739 741 0.675633 GGGCTGCACATTTTCAGTGT 59.324 50.000 0.50 0.00 39.17 3.55
741 743 1.067516 GGCTGCACATTTTCAGTGTGT 59.932 47.619 0.50 0.00 46.59 3.72
742 744 2.481795 GGCTGCACATTTTCAGTGTGTT 60.482 45.455 0.50 0.00 46.59 3.32
743 745 2.536803 GCTGCACATTTTCAGTGTGTTG 59.463 45.455 7.92 3.19 46.59 3.33
744 746 3.117794 CTGCACATTTTCAGTGTGTTGG 58.882 45.455 7.92 0.00 46.59 3.77
745 747 2.159128 TGCACATTTTCAGTGTGTTGGG 60.159 45.455 7.92 0.00 46.59 4.12
746 748 2.472816 CACATTTTCAGTGTGTTGGGC 58.527 47.619 0.00 0.00 41.48 5.36
747 749 2.101249 CACATTTTCAGTGTGTTGGGCT 59.899 45.455 0.00 0.00 41.48 5.19
748 750 2.101249 ACATTTTCAGTGTGTTGGGCTG 59.899 45.455 0.00 0.00 0.00 4.85
749 751 1.110442 TTTTCAGTGTGTTGGGCTGG 58.890 50.000 0.00 0.00 0.00 4.85
750 752 0.033601 TTTCAGTGTGTTGGGCTGGT 60.034 50.000 0.00 0.00 0.00 4.00
751 753 0.033601 TTCAGTGTGTTGGGCTGGTT 60.034 50.000 0.00 0.00 0.00 3.67
752 754 0.033601 TCAGTGTGTTGGGCTGGTTT 60.034 50.000 0.00 0.00 0.00 3.27
753 755 0.823460 CAGTGTGTTGGGCTGGTTTT 59.177 50.000 0.00 0.00 0.00 2.43
754 756 1.206849 CAGTGTGTTGGGCTGGTTTTT 59.793 47.619 0.00 0.00 0.00 1.94
755 757 2.428890 CAGTGTGTTGGGCTGGTTTTTA 59.571 45.455 0.00 0.00 0.00 1.52
756 758 2.693074 AGTGTGTTGGGCTGGTTTTTAG 59.307 45.455 0.00 0.00 0.00 1.85
757 759 2.035632 TGTGTTGGGCTGGTTTTTAGG 58.964 47.619 0.00 0.00 0.00 2.69
758 760 2.036387 GTGTTGGGCTGGTTTTTAGGT 58.964 47.619 0.00 0.00 0.00 3.08
759 761 2.035449 GTGTTGGGCTGGTTTTTAGGTC 59.965 50.000 0.00 0.00 0.00 3.85
760 762 2.091555 TGTTGGGCTGGTTTTTAGGTCT 60.092 45.455 0.00 0.00 0.00 3.85
761 763 3.138653 TGTTGGGCTGGTTTTTAGGTCTA 59.861 43.478 0.00 0.00 0.00 2.59
762 764 4.202631 TGTTGGGCTGGTTTTTAGGTCTAT 60.203 41.667 0.00 0.00 0.00 1.98
763 765 4.668138 TGGGCTGGTTTTTAGGTCTATT 57.332 40.909 0.00 0.00 0.00 1.73
764 766 4.340617 TGGGCTGGTTTTTAGGTCTATTG 58.659 43.478 0.00 0.00 0.00 1.90
765 767 3.699538 GGGCTGGTTTTTAGGTCTATTGG 59.300 47.826 0.00 0.00 0.00 3.16
766 768 4.569015 GGGCTGGTTTTTAGGTCTATTGGA 60.569 45.833 0.00 0.00 0.00 3.53
767 769 4.398358 GGCTGGTTTTTAGGTCTATTGGAC 59.602 45.833 0.00 0.00 43.79 4.02
768 770 5.254115 GCTGGTTTTTAGGTCTATTGGACT 58.746 41.667 0.00 0.00 43.97 3.85
769 771 6.412214 GCTGGTTTTTAGGTCTATTGGACTA 58.588 40.000 0.00 0.00 43.97 2.59
770 772 7.054751 GCTGGTTTTTAGGTCTATTGGACTAT 58.945 38.462 0.00 0.00 43.97 2.12
771 773 8.208903 GCTGGTTTTTAGGTCTATTGGACTATA 58.791 37.037 0.00 0.00 43.97 1.31
870 872 4.974721 CCAAGCACGGCCCAAGGT 62.975 66.667 0.00 0.00 0.00 3.50
871 873 3.673484 CAAGCACGGCCCAAGGTG 61.673 66.667 0.00 0.00 37.22 4.00
872 874 4.204028 AAGCACGGCCCAAGGTGT 62.204 61.111 9.81 0.00 36.54 4.16
873 875 4.954970 AGCACGGCCCAAGGTGTG 62.955 66.667 9.81 6.16 36.54 3.82
880 882 3.286751 CCCAAGGTGTGCCACGTG 61.287 66.667 9.08 9.08 34.83 4.49
881 883 2.515991 CCAAGGTGTGCCACGTGT 60.516 61.111 15.65 0.00 34.83 4.49
882 884 2.542907 CCAAGGTGTGCCACGTGTC 61.543 63.158 15.65 0.98 34.83 3.67
883 885 2.587753 AAGGTGTGCCACGTGTCG 60.588 61.111 15.65 0.51 34.83 4.35
884 886 4.602259 AGGTGTGCCACGTGTCGG 62.602 66.667 15.65 0.00 34.83 4.79
901 903 3.527427 GGCACGGCCCATTTAGCC 61.527 66.667 0.00 0.00 44.06 3.93
906 908 3.527427 GGCCCATTTAGCCCGTGC 61.527 66.667 0.00 0.00 45.16 5.34
907 909 3.527427 GCCCATTTAGCCCGTGCC 61.527 66.667 0.00 0.00 38.69 5.01
908 910 2.044451 CCCATTTAGCCCGTGCCA 60.044 61.111 0.00 0.00 38.69 4.92
909 911 1.455587 CCCATTTAGCCCGTGCCAT 60.456 57.895 0.00 0.00 38.69 4.40
910 912 1.735360 CCATTTAGCCCGTGCCATG 59.265 57.895 0.00 0.00 38.69 3.66
911 913 1.066257 CATTTAGCCCGTGCCATGC 59.934 57.895 0.00 0.00 38.69 4.06
912 914 2.127232 ATTTAGCCCGTGCCATGCC 61.127 57.895 0.00 0.00 38.69 4.40
913 915 2.572333 ATTTAGCCCGTGCCATGCCT 62.572 55.000 0.00 0.00 38.69 4.75
914 916 3.993614 TTAGCCCGTGCCATGCCTG 62.994 63.158 0.00 0.00 38.69 4.85
957 959 4.101448 CTAGCGGGCTGGCCTGTT 62.101 66.667 18.81 16.93 44.16 3.16
958 960 3.628646 CTAGCGGGCTGGCCTGTTT 62.629 63.158 18.81 12.07 44.16 2.83
959 961 3.918253 TAGCGGGCTGGCCTGTTTG 62.918 63.158 18.81 3.15 44.16 2.93
961 963 4.974721 CGGGCTGGCCTGTTTGGT 62.975 66.667 18.81 0.00 37.68 3.67
962 964 2.991540 GGGCTGGCCTGTTTGGTC 60.992 66.667 13.80 0.00 41.87 4.02
963 965 2.116125 GGCTGGCCTGTTTGGTCT 59.884 61.111 11.69 0.00 42.07 3.85
964 966 2.270986 GGCTGGCCTGTTTGGTCTG 61.271 63.158 11.69 0.00 42.07 3.51
965 967 2.270986 GCTGGCCTGTTTGGTCTGG 61.271 63.158 11.69 0.00 42.07 3.86
1078 1082 2.044946 CCCCCTTCTCCAAAGCCG 60.045 66.667 0.00 0.00 0.00 5.52
1079 1083 2.044946 CCCCTTCTCCAAAGCCGG 60.045 66.667 0.00 0.00 0.00 6.13
1080 1084 2.751837 CCCTTCTCCAAAGCCGGC 60.752 66.667 21.89 21.89 0.00 6.13
1081 1085 3.127533 CCTTCTCCAAAGCCGGCG 61.128 66.667 23.20 6.78 0.00 6.46
1082 1086 3.127533 CTTCTCCAAAGCCGGCGG 61.128 66.667 24.35 24.35 0.00 6.13
1097 1101 3.816524 CGGCGCTTCCTCGTCTCT 61.817 66.667 7.64 0.00 30.91 3.10
1098 1102 2.470362 CGGCGCTTCCTCGTCTCTA 61.470 63.158 7.64 0.00 30.91 2.43
1099 1103 1.064458 GGCGCTTCCTCGTCTCTAC 59.936 63.158 7.64 0.00 0.00 2.59
1100 1104 1.064458 GCGCTTCCTCGTCTCTACC 59.936 63.158 0.00 0.00 0.00 3.18
1141 1186 3.852578 AGAGAGAGAGAGAGAGGAAAGGT 59.147 47.826 0.00 0.00 0.00 3.50
1639 1686 0.812811 CCTCTCCATGTGCACCATCG 60.813 60.000 15.69 1.08 0.00 3.84
1832 1882 0.887387 TTTGCCGAACACCTAGTGGC 60.887 55.000 0.00 0.00 45.91 5.01
1986 2036 2.818130 GCTAGGAATGAGCTCAGGAG 57.182 55.000 22.96 14.21 36.96 3.69
1987 2037 2.038659 GCTAGGAATGAGCTCAGGAGT 58.961 52.381 22.96 9.40 36.96 3.85
1988 2038 2.224018 GCTAGGAATGAGCTCAGGAGTG 60.224 54.545 22.96 11.13 36.96 3.51
1989 2039 1.202330 AGGAATGAGCTCAGGAGTGG 58.798 55.000 22.96 0.00 0.00 4.00
1990 2040 0.908198 GGAATGAGCTCAGGAGTGGT 59.092 55.000 22.96 0.00 0.00 4.16
1991 2041 1.406614 GGAATGAGCTCAGGAGTGGTG 60.407 57.143 22.96 0.00 0.00 4.17
1992 2042 0.035630 AATGAGCTCAGGAGTGGTGC 60.036 55.000 22.96 0.00 0.00 5.01
1993 2043 1.196766 ATGAGCTCAGGAGTGGTGCA 61.197 55.000 22.96 0.00 0.00 4.57
1994 2044 1.375268 GAGCTCAGGAGTGGTGCAC 60.375 63.158 8.80 8.80 34.10 4.57
1995 2045 2.359230 GCTCAGGAGTGGTGCACC 60.359 66.667 29.67 29.67 34.49 5.01
1996 2046 2.047844 CTCAGGAGTGGTGCACCG 60.048 66.667 30.07 15.19 39.43 4.94
1997 2047 2.523168 TCAGGAGTGGTGCACCGA 60.523 61.111 30.07 17.33 39.43 4.69
1998 2048 2.099652 CTCAGGAGTGGTGCACCGAA 62.100 60.000 30.07 11.94 39.43 4.30
1999 2049 1.669115 CAGGAGTGGTGCACCGAAG 60.669 63.158 30.07 13.02 39.43 3.79
2039 2089 0.396060 GCTAGGAATGAGCTCAGGGG 59.604 60.000 22.96 9.57 36.96 4.79
2040 2090 1.799933 CTAGGAATGAGCTCAGGGGT 58.200 55.000 22.96 9.40 0.00 4.95
2041 2091 1.415659 CTAGGAATGAGCTCAGGGGTG 59.584 57.143 22.96 6.77 0.00 4.61
2042 2092 1.225704 GGAATGAGCTCAGGGGTGG 59.774 63.158 22.96 0.00 0.00 4.61
2043 2093 1.566298 GGAATGAGCTCAGGGGTGGT 61.566 60.000 22.96 0.00 0.00 4.16
2044 2094 0.393537 GAATGAGCTCAGGGGTGGTG 60.394 60.000 22.96 0.00 0.00 4.17
2045 2095 2.490270 AATGAGCTCAGGGGTGGTGC 62.490 60.000 22.96 0.00 0.00 5.01
2046 2096 3.640407 GAGCTCAGGGGTGGTGCA 61.640 66.667 9.40 0.00 0.00 4.57
2047 2097 3.909086 GAGCTCAGGGGTGGTGCAC 62.909 68.421 8.80 8.80 0.00 4.57
2216 2267 2.792952 GGATCTCCAAGGTGAGCACCA 61.793 57.143 20.79 0.18 44.24 4.17
2271 2322 1.589716 GAACGGCTGGAATTGCTGCT 61.590 55.000 24.01 8.48 40.21 4.24
2563 2627 8.620116 TTCAATCACTGAATACAACATCTTCA 57.380 30.769 0.00 0.00 39.20 3.02
2725 2791 7.180663 AGATTTCCAAGAGAAGGTTGATTGAT 58.819 34.615 0.00 0.00 35.40 2.57
2756 2822 4.910913 TCCTCTATTATTATGTGCCCACCA 59.089 41.667 0.00 0.00 0.00 4.17
3100 3268 6.426646 ACCAGTTTTCTCTGTTAGACTGAT 57.573 37.500 3.10 0.00 30.81 2.90
3737 4015 3.380004 CGGGCCTGAGTTGCATTTATTTA 59.620 43.478 5.28 0.00 0.00 1.40
3738 4016 4.682787 GGGCCTGAGTTGCATTTATTTAC 58.317 43.478 0.84 0.00 0.00 2.01
3739 4017 4.402474 GGGCCTGAGTTGCATTTATTTACT 59.598 41.667 0.84 0.00 0.00 2.24
3742 4020 7.201911 GGGCCTGAGTTGCATTTATTTACTAAT 60.202 37.037 0.84 0.00 0.00 1.73
3804 4123 8.713271 GCTAGCCAAATAAGTATGACTCAATAC 58.287 37.037 2.29 0.00 33.90 1.89
3811 4130 4.920640 AGTATGACTCAATACCCTGACG 57.079 45.455 0.00 0.00 34.16 4.35
4061 4387 7.818493 AGCAAAAAGTGAGAAAAGAAAAGTC 57.182 32.000 0.00 0.00 0.00 3.01
4064 4390 8.495148 GCAAAAAGTGAGAAAAGAAAAGTCAAA 58.505 29.630 0.00 0.00 0.00 2.69
4068 4394 8.972262 AAGTGAGAAAAGAAAAGTCAAAAGAC 57.028 30.769 0.00 0.00 0.00 3.01
4235 4676 1.414181 CCCTGACATATGAGCGTCCTT 59.586 52.381 10.38 0.00 0.00 3.36
4257 4698 6.128472 CCTTTATTTTAACACCGTTACTCGCT 60.128 38.462 0.00 0.00 38.35 4.93
4260 4701 9.579768 TTTATTTTAACACCGTTACTCGCTATA 57.420 29.630 0.00 0.00 38.35 1.31
4261 4702 6.869421 TTTTAACACCGTTACTCGCTATAC 57.131 37.500 0.00 0.00 38.35 1.47
4307 4748 0.168348 GCTGATGATGGATGCGATGC 59.832 55.000 0.00 0.00 0.00 3.91
4311 4752 0.039180 ATGATGGATGCGATGCCCAT 59.961 50.000 0.00 0.00 42.89 4.00
4342 4783 8.846943 TGCAATATATTCGACATGGTAAATCT 57.153 30.769 0.00 0.00 0.00 2.40
4384 4834 5.669430 CACTACACGACACACTTTAAAAACG 59.331 40.000 0.00 0.00 0.00 3.60
4412 4864 3.347958 TGAACCACAAACTCGCATTTC 57.652 42.857 0.00 0.00 0.00 2.17
4414 4866 3.243035 TGAACCACAAACTCGCATTTCTG 60.243 43.478 0.00 0.00 0.00 3.02
4480 4933 4.207019 GTCAGCTTCACGAATTTGTTTTGG 59.793 41.667 0.00 0.00 0.00 3.28
4615 5082 8.020819 TCGAAACTGCGAAAATTTTATGATTCT 58.979 29.630 2.75 0.00 37.35 2.40
4748 5257 7.657336 AGACAAAAGACAAAAGACAAAAGACA 58.343 30.769 0.00 0.00 0.00 3.41
4844 5372 1.494721 AGGTGCCTGACAAAAAGAGGA 59.505 47.619 0.00 0.00 0.00 3.71
4884 5412 1.153628 GATCGAACCCTGGTGTCCG 60.154 63.158 0.00 0.00 0.00 4.79
4929 5458 1.024046 TGCGCTGTTTCTGTGTGTGT 61.024 50.000 9.73 0.00 0.00 3.72
4930 5459 0.589729 GCGCTGTTTCTGTGTGTGTG 60.590 55.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.165944 ATCGTTTTTGGCGCGAAGAG 59.834 50.000 12.10 0.00 38.17 2.85
21 22 0.589223 AATCGTTTTTGGCGCGAAGA 59.411 45.000 12.10 0.00 38.17 2.87
22 23 1.122323 CAAATCGTTTTTGGCGCGAAG 59.878 47.619 12.10 0.00 38.17 3.79
23 24 1.124462 CAAATCGTTTTTGGCGCGAA 58.876 45.000 12.10 0.00 38.17 4.70
24 25 0.661780 CCAAATCGTTTTTGGCGCGA 60.662 50.000 12.10 0.00 41.95 5.87
25 26 1.772268 CCAAATCGTTTTTGGCGCG 59.228 52.632 16.01 0.00 41.95 6.86
30 31 1.613347 CGCCGGCCAAATCGTTTTTG 61.613 55.000 23.46 0.00 0.00 2.44
31 32 1.372375 CGCCGGCCAAATCGTTTTT 60.372 52.632 23.46 0.00 0.00 1.94
32 33 2.257067 CGCCGGCCAAATCGTTTT 59.743 55.556 23.46 0.00 0.00 2.43
33 34 4.413800 GCGCCGGCCAAATCGTTT 62.414 61.111 23.46 0.00 0.00 3.60
110 111 3.788766 CCAGTTTTCGCCGGCTCG 61.789 66.667 26.68 10.37 0.00 5.03
111 112 3.431725 CCCAGTTTTCGCCGGCTC 61.432 66.667 26.68 9.45 0.00 4.70
114 115 3.431725 GAGCCCAGTTTTCGCCGG 61.432 66.667 0.00 0.00 0.00 6.13
115 116 1.966451 AAGAGCCCAGTTTTCGCCG 60.966 57.895 0.00 0.00 0.00 6.46
116 117 1.581447 CAAGAGCCCAGTTTTCGCC 59.419 57.895 0.00 0.00 0.00 5.54
117 118 1.581447 CCAAGAGCCCAGTTTTCGC 59.419 57.895 0.00 0.00 0.00 4.70
118 119 1.244019 CCCCAAGAGCCCAGTTTTCG 61.244 60.000 0.00 0.00 0.00 3.46
119 120 0.900182 CCCCCAAGAGCCCAGTTTTC 60.900 60.000 0.00 0.00 0.00 2.29
120 121 1.156095 CCCCCAAGAGCCCAGTTTT 59.844 57.895 0.00 0.00 0.00 2.43
121 122 2.854076 CCCCCAAGAGCCCAGTTT 59.146 61.111 0.00 0.00 0.00 2.66
122 123 3.984732 GCCCCCAAGAGCCCAGTT 61.985 66.667 0.00 0.00 0.00 3.16
139 140 2.686816 AAAAATCGGCCCAGTCGCG 61.687 57.895 0.00 0.00 0.00 5.87
140 141 3.274067 AAAAATCGGCCCAGTCGC 58.726 55.556 0.00 0.00 0.00 5.19
154 155 2.587679 CGTCCGTCGGCGTCAAAAA 61.588 57.895 9.28 0.00 36.15 1.94
155 156 2.950565 TTCGTCCGTCGGCGTCAAAA 62.951 55.000 21.64 10.39 40.32 2.44
156 157 2.950565 TTTCGTCCGTCGGCGTCAAA 62.951 55.000 21.64 15.16 40.32 2.69
157 158 2.950565 TTTTCGTCCGTCGGCGTCAA 62.951 55.000 21.64 15.13 40.32 3.18
158 159 2.950565 TTTTTCGTCCGTCGGCGTCA 62.951 55.000 21.64 11.28 40.32 4.35
159 160 2.302230 TTTTTCGTCCGTCGGCGTC 61.302 57.895 21.64 0.00 40.32 5.19
160 161 2.279385 TTTTTCGTCCGTCGGCGT 60.279 55.556 21.64 0.00 40.32 5.68
174 175 2.039418 GAAGGCTTCCCAGGTGTTTTT 58.961 47.619 16.50 0.00 0.00 1.94
175 176 1.217942 AGAAGGCTTCCCAGGTGTTTT 59.782 47.619 23.09 0.00 0.00 2.43
176 177 0.853530 AGAAGGCTTCCCAGGTGTTT 59.146 50.000 23.09 0.00 0.00 2.83
177 178 0.853530 AAGAAGGCTTCCCAGGTGTT 59.146 50.000 23.09 6.72 0.00 3.32
178 179 0.111253 CAAGAAGGCTTCCCAGGTGT 59.889 55.000 23.09 0.05 30.14 4.16
179 180 0.610232 CCAAGAAGGCTTCCCAGGTG 60.610 60.000 23.09 13.05 30.14 4.00
180 181 1.770324 CCAAGAAGGCTTCCCAGGT 59.230 57.895 23.09 1.62 30.14 4.00
181 182 1.000396 CCCAAGAAGGCTTCCCAGG 60.000 63.158 23.09 20.27 35.39 4.45
182 183 1.000396 CCCCAAGAAGGCTTCCCAG 60.000 63.158 23.09 12.99 35.39 4.45
183 184 2.547595 CCCCCAAGAAGGCTTCCCA 61.548 63.158 23.09 0.00 35.39 4.37
184 185 2.360585 CCCCCAAGAAGGCTTCCC 59.639 66.667 23.09 0.20 35.39 3.97
185 186 2.363018 GCCCCCAAGAAGGCTTCC 60.363 66.667 23.09 6.13 46.14 3.46
202 203 1.672854 TAAGGACATCTCCGGCCACG 61.673 60.000 2.24 0.00 42.22 4.94
203 204 0.759346 ATAAGGACATCTCCGGCCAC 59.241 55.000 2.24 0.00 42.22 5.01
204 205 1.048601 GATAAGGACATCTCCGGCCA 58.951 55.000 2.24 0.00 42.22 5.36
205 206 0.038159 CGATAAGGACATCTCCGGCC 60.038 60.000 0.00 0.00 42.22 6.13
206 207 0.674534 ACGATAAGGACATCTCCGGC 59.325 55.000 0.00 0.00 42.22 6.13
207 208 3.058155 CAGTACGATAAGGACATCTCCGG 60.058 52.174 0.00 0.00 42.22 5.14
208 209 3.813724 TCAGTACGATAAGGACATCTCCG 59.186 47.826 0.00 0.00 42.22 4.63
209 210 5.299782 ACTTCAGTACGATAAGGACATCTCC 59.700 44.000 0.00 0.00 35.65 3.71
210 211 6.380095 ACTTCAGTACGATAAGGACATCTC 57.620 41.667 0.00 0.00 35.65 2.75
211 212 6.565234 CAACTTCAGTACGATAAGGACATCT 58.435 40.000 0.00 0.00 35.65 2.90
212 213 5.232414 GCAACTTCAGTACGATAAGGACATC 59.768 44.000 0.00 0.00 35.65 3.06
213 214 5.109903 GCAACTTCAGTACGATAAGGACAT 58.890 41.667 0.00 0.00 35.65 3.06
214 215 4.021807 TGCAACTTCAGTACGATAAGGACA 60.022 41.667 0.00 2.99 35.65 4.02
215 216 4.491676 TGCAACTTCAGTACGATAAGGAC 58.508 43.478 0.00 1.08 0.00 3.85
216 217 4.794278 TGCAACTTCAGTACGATAAGGA 57.206 40.909 0.00 0.00 0.00 3.36
217 218 7.095607 GGATAATGCAACTTCAGTACGATAAGG 60.096 40.741 0.00 0.00 0.00 2.69
218 219 7.438160 TGGATAATGCAACTTCAGTACGATAAG 59.562 37.037 0.00 4.09 0.00 1.73
219 220 7.269316 TGGATAATGCAACTTCAGTACGATAA 58.731 34.615 0.00 0.00 0.00 1.75
220 221 6.811954 TGGATAATGCAACTTCAGTACGATA 58.188 36.000 0.00 0.00 0.00 2.92
221 222 5.670485 TGGATAATGCAACTTCAGTACGAT 58.330 37.500 0.00 0.00 0.00 3.73
222 223 5.079689 TGGATAATGCAACTTCAGTACGA 57.920 39.130 0.00 0.00 0.00 3.43
223 224 5.294306 ACATGGATAATGCAACTTCAGTACG 59.706 40.000 0.00 0.00 40.22 3.67
224 225 6.540189 AGACATGGATAATGCAACTTCAGTAC 59.460 38.462 0.00 0.00 40.22 2.73
225 226 6.539826 CAGACATGGATAATGCAACTTCAGTA 59.460 38.462 0.00 0.00 40.22 2.74
226 227 5.356190 CAGACATGGATAATGCAACTTCAGT 59.644 40.000 0.00 0.00 40.22 3.41
227 228 5.356190 ACAGACATGGATAATGCAACTTCAG 59.644 40.000 0.00 0.00 40.22 3.02
228 229 5.255687 ACAGACATGGATAATGCAACTTCA 58.744 37.500 0.00 0.00 40.22 3.02
229 230 5.220931 GGACAGACATGGATAATGCAACTTC 60.221 44.000 0.00 0.00 40.22 3.01
230 231 4.641989 GGACAGACATGGATAATGCAACTT 59.358 41.667 0.00 0.00 40.22 2.66
231 232 4.080129 AGGACAGACATGGATAATGCAACT 60.080 41.667 0.00 0.00 40.22 3.16
232 233 4.202441 AGGACAGACATGGATAATGCAAC 58.798 43.478 0.00 0.00 40.22 4.17
233 234 4.508551 AGGACAGACATGGATAATGCAA 57.491 40.909 0.00 0.00 40.22 4.08
234 235 4.201657 CAAGGACAGACATGGATAATGCA 58.798 43.478 0.00 0.00 40.22 3.96
235 236 4.202441 ACAAGGACAGACATGGATAATGC 58.798 43.478 0.00 0.00 40.22 3.56
236 237 7.275183 TCTAACAAGGACAGACATGGATAATG 58.725 38.462 0.00 0.00 42.48 1.90
237 238 7.437713 TCTAACAAGGACAGACATGGATAAT 57.562 36.000 0.00 0.00 0.00 1.28
238 239 6.867519 TCTAACAAGGACAGACATGGATAA 57.132 37.500 0.00 0.00 0.00 1.75
239 240 6.440647 AGTTCTAACAAGGACAGACATGGATA 59.559 38.462 0.00 0.00 0.00 2.59
240 241 5.249393 AGTTCTAACAAGGACAGACATGGAT 59.751 40.000 0.00 0.00 0.00 3.41
241 242 4.593206 AGTTCTAACAAGGACAGACATGGA 59.407 41.667 0.00 0.00 0.00 3.41
242 243 4.899502 AGTTCTAACAAGGACAGACATGG 58.100 43.478 0.00 0.00 0.00 3.66
243 244 6.925211 TCTAGTTCTAACAAGGACAGACATG 58.075 40.000 0.00 0.00 0.00 3.21
244 245 6.948886 TCTCTAGTTCTAACAAGGACAGACAT 59.051 38.462 0.00 0.00 0.00 3.06
245 246 6.304624 TCTCTAGTTCTAACAAGGACAGACA 58.695 40.000 0.00 0.00 0.00 3.41
246 247 6.821031 TCTCTAGTTCTAACAAGGACAGAC 57.179 41.667 0.00 0.00 0.00 3.51
247 248 9.702253 ATAATCTCTAGTTCTAACAAGGACAGA 57.298 33.333 0.00 0.00 0.00 3.41
248 249 9.743057 CATAATCTCTAGTTCTAACAAGGACAG 57.257 37.037 0.00 0.00 0.00 3.51
249 250 8.198109 GCATAATCTCTAGTTCTAACAAGGACA 58.802 37.037 0.00 0.00 0.00 4.02
250 251 8.417884 AGCATAATCTCTAGTTCTAACAAGGAC 58.582 37.037 0.00 0.00 0.00 3.85
251 252 8.540507 AGCATAATCTCTAGTTCTAACAAGGA 57.459 34.615 0.00 0.00 0.00 3.36
259 260 9.487790 GCAGAAATAAGCATAATCTCTAGTTCT 57.512 33.333 0.00 0.00 0.00 3.01
260 261 9.487790 AGCAGAAATAAGCATAATCTCTAGTTC 57.512 33.333 0.00 0.00 0.00 3.01
261 262 9.844257 AAGCAGAAATAAGCATAATCTCTAGTT 57.156 29.630 0.00 0.00 0.00 2.24
262 263 9.844257 AAAGCAGAAATAAGCATAATCTCTAGT 57.156 29.630 0.00 0.00 0.00 2.57
314 315 7.987458 ACCATCGTCTTATATTTTGAGACACAT 59.013 33.333 0.00 0.00 39.74 3.21
315 316 7.327975 ACCATCGTCTTATATTTTGAGACACA 58.672 34.615 0.00 0.00 39.74 3.72
316 317 7.772332 ACCATCGTCTTATATTTTGAGACAC 57.228 36.000 0.00 0.00 39.74 3.67
317 318 8.471609 TGTACCATCGTCTTATATTTTGAGACA 58.528 33.333 0.00 0.00 39.74 3.41
318 319 8.753175 GTGTACCATCGTCTTATATTTTGAGAC 58.247 37.037 0.00 0.00 37.13 3.36
319 320 8.471609 TGTGTACCATCGTCTTATATTTTGAGA 58.528 33.333 0.00 0.00 0.00 3.27
320 321 8.540492 GTGTGTACCATCGTCTTATATTTTGAG 58.460 37.037 0.00 0.00 0.00 3.02
321 322 8.255206 AGTGTGTACCATCGTCTTATATTTTGA 58.745 33.333 0.00 0.00 0.00 2.69
334 335 4.513692 TGAAGGAAAAAGTGTGTACCATCG 59.486 41.667 0.00 0.00 0.00 3.84
344 345 7.360861 GGTTGGTTTTCTTTGAAGGAAAAAGTG 60.361 37.037 15.36 0.00 42.02 3.16
367 368 8.562052 CCCTCGCTAAAAATATAATTTACGGTT 58.438 33.333 0.00 0.00 0.00 4.44
380 381 5.881923 TCTACATACCCCTCGCTAAAAAT 57.118 39.130 0.00 0.00 0.00 1.82
386 387 3.075582 TCCTATTCTACATACCCCTCGCT 59.924 47.826 0.00 0.00 0.00 4.93
422 424 4.495422 AGTAAGGTGCGACTTGTGATAAG 58.505 43.478 3.23 0.00 32.02 1.73
423 425 4.021807 TGAGTAAGGTGCGACTTGTGATAA 60.022 41.667 3.23 0.00 32.02 1.75
424 426 3.508402 TGAGTAAGGTGCGACTTGTGATA 59.492 43.478 3.23 0.00 32.02 2.15
425 427 2.299013 TGAGTAAGGTGCGACTTGTGAT 59.701 45.455 3.23 0.00 32.02 3.06
426 428 1.684450 TGAGTAAGGTGCGACTTGTGA 59.316 47.619 3.23 0.00 32.02 3.58
428 430 3.402628 AATGAGTAAGGTGCGACTTGT 57.597 42.857 3.23 0.00 32.02 3.16
429 431 3.125316 GGAAATGAGTAAGGTGCGACTTG 59.875 47.826 3.23 0.00 32.02 3.16
430 432 3.335579 GGAAATGAGTAAGGTGCGACTT 58.664 45.455 0.00 0.00 34.52 3.01
431 433 2.354805 GGGAAATGAGTAAGGTGCGACT 60.355 50.000 0.00 0.00 0.00 4.18
432 434 2.007608 GGGAAATGAGTAAGGTGCGAC 58.992 52.381 0.00 0.00 0.00 5.19
433 435 1.906574 AGGGAAATGAGTAAGGTGCGA 59.093 47.619 0.00 0.00 0.00 5.10
434 436 2.280628 GAGGGAAATGAGTAAGGTGCG 58.719 52.381 0.00 0.00 0.00 5.34
435 437 3.350219 TGAGGGAAATGAGTAAGGTGC 57.650 47.619 0.00 0.00 0.00 5.01
436 438 6.648879 TTTTTGAGGGAAATGAGTAAGGTG 57.351 37.500 0.00 0.00 0.00 4.00
459 461 4.438200 CGTGTGAGTAAGGTGCAACTTTTT 60.438 41.667 24.46 11.36 37.34 1.94
460 462 3.064820 CGTGTGAGTAAGGTGCAACTTTT 59.935 43.478 24.46 11.76 37.34 2.27
461 463 2.612212 CGTGTGAGTAAGGTGCAACTTT 59.388 45.455 24.46 5.10 40.27 2.66
462 464 2.210116 CGTGTGAGTAAGGTGCAACTT 58.790 47.619 22.75 22.75 36.74 2.66
463 465 1.540363 CCGTGTGAGTAAGGTGCAACT 60.540 52.381 0.00 0.00 36.74 3.16
464 466 0.865769 CCGTGTGAGTAAGGTGCAAC 59.134 55.000 0.00 0.00 0.00 4.17
465 467 0.753867 TCCGTGTGAGTAAGGTGCAA 59.246 50.000 0.00 0.00 0.00 4.08
466 468 0.973632 ATCCGTGTGAGTAAGGTGCA 59.026 50.000 0.00 0.00 0.00 4.57
467 469 1.641577 GATCCGTGTGAGTAAGGTGC 58.358 55.000 0.00 0.00 0.00 5.01
468 470 1.909376 CGATCCGTGTGAGTAAGGTG 58.091 55.000 0.00 0.00 0.00 4.00
469 471 0.172803 GCGATCCGTGTGAGTAAGGT 59.827 55.000 0.00 0.00 0.00 3.50
470 472 0.172578 TGCGATCCGTGTGAGTAAGG 59.827 55.000 0.00 0.00 0.00 2.69
471 473 1.269166 GTGCGATCCGTGTGAGTAAG 58.731 55.000 0.00 0.00 0.00 2.34
472 474 0.455464 CGTGCGATCCGTGTGAGTAA 60.455 55.000 0.00 0.00 0.00 2.24
473 475 1.135939 CGTGCGATCCGTGTGAGTA 59.864 57.895 0.00 0.00 0.00 2.59
474 476 2.126463 CGTGCGATCCGTGTGAGT 60.126 61.111 0.00 0.00 0.00 3.41
475 477 2.126463 ACGTGCGATCCGTGTGAG 60.126 61.111 0.00 0.00 37.12 3.51
480 482 1.733041 CAAGTCACGTGCGATCCGT 60.733 57.895 11.67 0.00 39.52 4.69
481 483 1.733041 ACAAGTCACGTGCGATCCG 60.733 57.895 11.67 0.00 0.00 4.18
482 484 0.944311 ACACAAGTCACGTGCGATCC 60.944 55.000 11.67 0.00 37.93 3.36
483 485 1.385743 GTACACAAGTCACGTGCGATC 59.614 52.381 11.67 1.25 37.93 3.69
484 486 1.415374 GTACACAAGTCACGTGCGAT 58.585 50.000 11.67 0.00 37.93 4.58
485 487 0.595567 GGTACACAAGTCACGTGCGA 60.596 55.000 11.67 0.00 37.93 5.10
486 488 0.596600 AGGTACACAAGTCACGTGCG 60.597 55.000 11.67 1.47 37.93 5.34
487 489 1.578583 AAGGTACACAAGTCACGTGC 58.421 50.000 11.67 6.26 37.93 5.34
488 490 4.609691 AAAAAGGTACACAAGTCACGTG 57.390 40.909 9.94 9.94 40.32 4.49
508 510 4.196193 ACACAAGTCACGATCCTCAAAAA 58.804 39.130 0.00 0.00 0.00 1.94
509 511 3.804036 ACACAAGTCACGATCCTCAAAA 58.196 40.909 0.00 0.00 0.00 2.44
510 512 3.469008 ACACAAGTCACGATCCTCAAA 57.531 42.857 0.00 0.00 0.00 2.69
511 513 3.319689 TGTACACAAGTCACGATCCTCAA 59.680 43.478 0.00 0.00 0.00 3.02
512 514 2.888414 TGTACACAAGTCACGATCCTCA 59.112 45.455 0.00 0.00 0.00 3.86
513 515 3.190744 TCTGTACACAAGTCACGATCCTC 59.809 47.826 0.00 0.00 0.00 3.71
514 516 3.057456 GTCTGTACACAAGTCACGATCCT 60.057 47.826 0.00 0.00 0.00 3.24
515 517 3.243336 GTCTGTACACAAGTCACGATCC 58.757 50.000 0.00 0.00 0.00 3.36
516 518 3.057456 AGGTCTGTACACAAGTCACGATC 60.057 47.826 0.00 0.00 0.00 3.69
517 519 2.891580 AGGTCTGTACACAAGTCACGAT 59.108 45.455 0.00 0.00 0.00 3.73
518 520 2.034179 CAGGTCTGTACACAAGTCACGA 59.966 50.000 0.00 0.00 0.00 4.35
519 521 2.394708 CAGGTCTGTACACAAGTCACG 58.605 52.381 0.00 0.00 0.00 4.35
520 522 2.755650 CCAGGTCTGTACACAAGTCAC 58.244 52.381 0.00 0.00 0.00 3.67
521 523 1.070134 GCCAGGTCTGTACACAAGTCA 59.930 52.381 0.00 0.00 0.00 3.41
522 524 1.608283 GGCCAGGTCTGTACACAAGTC 60.608 57.143 0.00 0.00 0.00 3.01
523 525 0.396811 GGCCAGGTCTGTACACAAGT 59.603 55.000 0.00 0.00 0.00 3.16
524 526 0.396435 TGGCCAGGTCTGTACACAAG 59.604 55.000 0.00 0.00 0.00 3.16
525 527 0.840617 TTGGCCAGGTCTGTACACAA 59.159 50.000 5.11 0.00 0.00 3.33
526 528 0.840617 TTTGGCCAGGTCTGTACACA 59.159 50.000 5.11 0.00 0.00 3.72
527 529 1.235724 GTTTGGCCAGGTCTGTACAC 58.764 55.000 5.11 0.00 0.00 2.90
528 530 0.250124 CGTTTGGCCAGGTCTGTACA 60.250 55.000 5.11 0.00 0.00 2.90
529 531 0.953960 CCGTTTGGCCAGGTCTGTAC 60.954 60.000 5.11 0.00 0.00 2.90
530 532 1.122632 TCCGTTTGGCCAGGTCTGTA 61.123 55.000 5.11 0.00 34.14 2.74
531 533 2.113139 CCGTTTGGCCAGGTCTGT 59.887 61.111 5.11 0.00 0.00 3.41
532 534 1.966451 GTCCGTTTGGCCAGGTCTG 60.966 63.158 5.11 0.00 34.14 3.51
533 535 2.430367 GTCCGTTTGGCCAGGTCT 59.570 61.111 5.11 0.00 34.14 3.85
534 536 2.671963 GGTCCGTTTGGCCAGGTC 60.672 66.667 5.11 1.39 33.24 3.85
535 537 4.636435 CGGTCCGTTTGGCCAGGT 62.636 66.667 5.11 0.00 32.74 4.00
537 539 4.636435 ACCGGTCCGTTTGGCCAG 62.636 66.667 5.11 0.00 32.74 4.85
538 540 4.629523 GACCGGTCCGTTTGGCCA 62.630 66.667 24.75 0.00 32.74 5.36
570 572 1.447838 CACGATTAGCACAGGCCGT 60.448 57.895 0.00 0.00 42.56 5.68
571 573 2.813179 GCACGATTAGCACAGGCCG 61.813 63.158 0.00 0.00 42.56 6.13
572 574 2.472909 GGCACGATTAGCACAGGCC 61.473 63.158 0.00 0.00 42.56 5.19
573 575 1.450312 AGGCACGATTAGCACAGGC 60.450 57.895 0.00 0.00 41.61 4.85
574 576 1.091771 CCAGGCACGATTAGCACAGG 61.092 60.000 0.00 0.00 0.00 4.00
575 577 1.709147 GCCAGGCACGATTAGCACAG 61.709 60.000 6.55 0.00 0.00 3.66
576 578 1.745115 GCCAGGCACGATTAGCACA 60.745 57.895 6.55 0.00 0.00 4.57
577 579 1.432270 GAGCCAGGCACGATTAGCAC 61.432 60.000 15.80 0.00 0.00 4.40
578 580 1.153369 GAGCCAGGCACGATTAGCA 60.153 57.895 15.80 0.00 0.00 3.49
579 581 2.240500 CGAGCCAGGCACGATTAGC 61.241 63.158 25.51 0.00 44.57 3.09
580 582 1.592669 CCGAGCCAGGCACGATTAG 60.593 63.158 30.40 11.47 44.57 1.73
581 583 2.499205 CCGAGCCAGGCACGATTA 59.501 61.111 30.40 0.00 44.57 1.75
604 606 1.135141 CATTAAACGTGCCATGGTGGG 60.135 52.381 14.67 5.06 38.19 4.61
605 607 1.135141 CCATTAAACGTGCCATGGTGG 60.135 52.381 14.67 5.70 41.55 4.61
606 608 1.735369 GCCATTAAACGTGCCATGGTG 60.735 52.381 14.67 6.42 38.81 4.17
607 609 0.530288 GCCATTAAACGTGCCATGGT 59.470 50.000 14.67 0.00 38.81 3.55
608 610 0.179113 GGCCATTAAACGTGCCATGG 60.179 55.000 7.63 7.63 43.46 3.66
609 611 0.525242 CGGCCATTAAACGTGCCATG 60.525 55.000 12.24 4.05 44.22 3.66
610 612 1.662438 CCGGCCATTAAACGTGCCAT 61.662 55.000 12.24 0.00 44.22 4.40
611 613 2.336478 CCGGCCATTAAACGTGCCA 61.336 57.895 12.24 0.00 44.22 4.92
612 614 2.487892 CCGGCCATTAAACGTGCC 59.512 61.111 2.24 2.35 40.54 5.01
613 615 2.487892 CCCGGCCATTAAACGTGC 59.512 61.111 2.24 0.00 0.00 5.34
614 616 2.487892 GCCCGGCCATTAAACGTG 59.512 61.111 2.24 0.00 0.00 4.49
670 672 1.933853 CATTTACTACTCAGGCCGTGC 59.066 52.381 0.00 0.00 0.00 5.34
671 673 2.550978 CCATTTACTACTCAGGCCGTG 58.449 52.381 0.00 0.00 0.00 4.94
672 674 1.485066 CCCATTTACTACTCAGGCCGT 59.515 52.381 0.00 0.00 0.00 5.68
673 675 1.810412 GCCCATTTACTACTCAGGCCG 60.810 57.143 0.00 0.00 32.68 6.13
674 676 1.968704 GCCCATTTACTACTCAGGCC 58.031 55.000 0.00 0.00 32.68 5.19
675 677 1.810412 CGGCCCATTTACTACTCAGGC 60.810 57.143 0.00 0.00 38.21 4.85
676 678 1.202651 CCGGCCCATTTACTACTCAGG 60.203 57.143 0.00 0.00 0.00 3.86
677 679 1.810412 GCCGGCCCATTTACTACTCAG 60.810 57.143 18.11 0.00 0.00 3.35
678 680 0.179468 GCCGGCCCATTTACTACTCA 59.821 55.000 18.11 0.00 0.00 3.41
679 681 0.534427 GGCCGGCCCATTTACTACTC 60.534 60.000 36.64 4.14 0.00 2.59
680 682 0.986550 AGGCCGGCCCATTTACTACT 60.987 55.000 41.72 16.98 36.58 2.57
681 683 0.818040 CAGGCCGGCCCATTTACTAC 60.818 60.000 41.72 13.23 36.58 2.73
682 684 0.983905 TCAGGCCGGCCCATTTACTA 60.984 55.000 41.72 15.30 36.58 1.82
683 685 1.645402 ATCAGGCCGGCCCATTTACT 61.645 55.000 41.72 19.56 36.58 2.24
684 686 1.152756 ATCAGGCCGGCCCATTTAC 60.153 57.895 41.72 15.73 36.58 2.01
685 687 1.152777 CATCAGGCCGGCCCATTTA 60.153 57.895 41.72 22.56 36.58 1.40
686 688 2.442643 CATCAGGCCGGCCCATTT 60.443 61.111 41.72 21.73 36.58 2.32
687 689 4.528039 CCATCAGGCCGGCCCATT 62.528 66.667 41.72 22.17 36.58 3.16
697 699 1.035139 GTGCTAAATGGGCCATCAGG 58.965 55.000 21.48 13.21 38.23 3.86
698 700 0.664761 CGTGCTAAATGGGCCATCAG 59.335 55.000 21.48 19.98 0.00 2.90
699 701 1.383456 GCGTGCTAAATGGGCCATCA 61.383 55.000 21.48 10.70 0.00 3.07
700 702 1.103398 AGCGTGCTAAATGGGCCATC 61.103 55.000 21.48 7.81 0.00 3.51
701 703 1.076777 AGCGTGCTAAATGGGCCAT 60.077 52.632 14.78 14.78 0.00 4.40
702 704 2.045708 CAGCGTGCTAAATGGGCCA 61.046 57.895 9.61 9.61 0.00 5.36
703 705 2.774799 CCAGCGTGCTAAATGGGCC 61.775 63.158 0.00 0.00 0.00 5.80
704 706 2.774799 CCCAGCGTGCTAAATGGGC 61.775 63.158 4.20 0.00 45.62 5.36
705 707 3.513225 CCCAGCGTGCTAAATGGG 58.487 61.111 2.87 2.87 46.14 4.00
706 708 1.750399 AGCCCAGCGTGCTAAATGG 60.750 57.895 0.00 0.00 37.28 3.16
707 709 1.430632 CAGCCCAGCGTGCTAAATG 59.569 57.895 0.00 0.00 36.81 2.32
708 710 2.409870 GCAGCCCAGCGTGCTAAAT 61.410 57.895 0.00 0.00 36.81 1.40
709 711 3.055719 GCAGCCCAGCGTGCTAAA 61.056 61.111 0.00 0.00 36.81 1.85
710 712 4.328025 TGCAGCCCAGCGTGCTAA 62.328 61.111 0.00 0.00 40.54 3.09
714 716 2.424705 AAAATGTGCAGCCCAGCGTG 62.425 55.000 0.00 0.00 37.31 5.34
715 717 2.146073 GAAAATGTGCAGCCCAGCGT 62.146 55.000 0.00 0.00 37.31 5.07
716 718 1.444895 GAAAATGTGCAGCCCAGCG 60.445 57.895 0.00 0.00 37.31 5.18
717 719 0.389426 CTGAAAATGTGCAGCCCAGC 60.389 55.000 0.00 0.00 0.00 4.85
718 720 0.963962 ACTGAAAATGTGCAGCCCAG 59.036 50.000 0.00 0.00 35.57 4.45
719 721 0.675083 CACTGAAAATGTGCAGCCCA 59.325 50.000 0.00 0.00 35.57 5.36
720 722 0.675633 ACACTGAAAATGTGCAGCCC 59.324 50.000 0.00 0.00 38.86 5.19
721 723 1.774639 CACACTGAAAATGTGCAGCC 58.225 50.000 0.00 0.00 40.94 4.85
727 729 2.101249 CAGCCCAACACACTGAAAATGT 59.899 45.455 0.00 0.00 33.10 2.71
728 730 2.546373 CCAGCCCAACACACTGAAAATG 60.546 50.000 0.00 0.00 33.10 2.32
729 731 1.688197 CCAGCCCAACACACTGAAAAT 59.312 47.619 0.00 0.00 33.10 1.82
730 732 1.110442 CCAGCCCAACACACTGAAAA 58.890 50.000 0.00 0.00 33.10 2.29
731 733 0.033601 ACCAGCCCAACACACTGAAA 60.034 50.000 0.00 0.00 33.10 2.69
732 734 0.033601 AACCAGCCCAACACACTGAA 60.034 50.000 0.00 0.00 33.10 3.02
733 735 0.033601 AAACCAGCCCAACACACTGA 60.034 50.000 0.00 0.00 33.10 3.41
734 736 0.823460 AAAACCAGCCCAACACACTG 59.177 50.000 0.00 0.00 0.00 3.66
735 737 1.567357 AAAAACCAGCCCAACACACT 58.433 45.000 0.00 0.00 0.00 3.55
736 738 2.223947 CCTAAAAACCAGCCCAACACAC 60.224 50.000 0.00 0.00 0.00 3.82
737 739 2.035632 CCTAAAAACCAGCCCAACACA 58.964 47.619 0.00 0.00 0.00 3.72
738 740 2.035449 GACCTAAAAACCAGCCCAACAC 59.965 50.000 0.00 0.00 0.00 3.32
739 741 2.091555 AGACCTAAAAACCAGCCCAACA 60.092 45.455 0.00 0.00 0.00 3.33
740 742 2.594131 AGACCTAAAAACCAGCCCAAC 58.406 47.619 0.00 0.00 0.00 3.77
741 743 4.668138 ATAGACCTAAAAACCAGCCCAA 57.332 40.909 0.00 0.00 0.00 4.12
742 744 4.340617 CAATAGACCTAAAAACCAGCCCA 58.659 43.478 0.00 0.00 0.00 5.36
743 745 3.699538 CCAATAGACCTAAAAACCAGCCC 59.300 47.826 0.00 0.00 0.00 5.19
744 746 4.398358 GTCCAATAGACCTAAAAACCAGCC 59.602 45.833 0.00 0.00 39.84 4.85
745 747 5.562506 GTCCAATAGACCTAAAAACCAGC 57.437 43.478 0.00 0.00 39.84 4.85
853 855 4.974721 ACCTTGGGCCGTGCTTGG 62.975 66.667 0.00 0.00 0.00 3.61
854 856 3.673484 CACCTTGGGCCGTGCTTG 61.673 66.667 0.00 0.00 0.00 4.01
855 857 4.204028 ACACCTTGGGCCGTGCTT 62.204 61.111 9.60 0.00 33.09 3.91
856 858 4.954970 CACACCTTGGGCCGTGCT 62.955 66.667 9.60 0.00 33.09 4.40
890 892 3.527427 GGCACGGGCTAAATGGGC 61.527 66.667 10.74 0.00 40.87 5.36
891 893 1.455587 ATGGCACGGGCTAAATGGG 60.456 57.895 10.74 0.00 40.87 4.00
892 894 1.735360 CATGGCACGGGCTAAATGG 59.265 57.895 10.74 0.00 40.87 3.16
893 895 1.066257 GCATGGCACGGGCTAAATG 59.934 57.895 10.74 12.72 40.87 2.32
894 896 2.127232 GGCATGGCACGGGCTAAAT 61.127 57.895 15.47 0.00 40.87 1.40
895 897 2.753849 GGCATGGCACGGGCTAAA 60.754 61.111 15.47 0.00 40.87 1.85
896 898 3.727258 AGGCATGGCACGGGCTAA 61.727 61.111 22.64 0.00 39.16 3.09
897 899 4.488136 CAGGCATGGCACGGGCTA 62.488 66.667 22.64 2.50 38.93 3.93
940 942 3.628646 AAACAGGCCAGCCCGCTAG 62.629 63.158 5.01 0.00 39.21 3.42
941 943 3.646715 AAACAGGCCAGCCCGCTA 61.647 61.111 5.01 0.00 39.21 4.26
944 946 4.974721 ACCAAACAGGCCAGCCCG 62.975 66.667 5.01 0.00 43.14 6.13
945 947 2.991540 GACCAAACAGGCCAGCCC 60.992 66.667 5.01 0.00 43.14 5.19
946 948 2.116125 AGACCAAACAGGCCAGCC 59.884 61.111 5.01 0.00 43.14 4.85
947 949 2.270986 CCAGACCAAACAGGCCAGC 61.271 63.158 5.01 0.00 43.14 4.85
948 950 2.270986 GCCAGACCAAACAGGCCAG 61.271 63.158 5.01 0.00 43.14 4.85
949 951 2.203480 GCCAGACCAAACAGGCCA 60.203 61.111 5.01 0.00 43.14 5.36
950 952 3.365265 CGCCAGACCAAACAGGCC 61.365 66.667 0.00 0.00 44.18 5.19
951 953 3.365265 CCGCCAGACCAAACAGGC 61.365 66.667 0.00 0.00 43.14 4.85
952 954 3.365265 GCCGCCAGACCAAACAGG 61.365 66.667 0.00 0.00 45.67 4.00
953 955 3.365265 GGCCGCCAGACCAAACAG 61.365 66.667 3.91 0.00 0.00 3.16
954 956 4.966787 GGGCCGCCAGACCAAACA 62.967 66.667 12.58 0.00 0.00 2.83
981 983 6.017275 ACGATACAGAGGTACACAAGTATAGC 60.017 42.308 0.00 0.00 31.84 2.97
1061 1065 2.044946 CGGCTTTGGAGAAGGGGG 60.045 66.667 0.00 0.00 0.00 5.40
1062 1066 2.044946 CCGGCTTTGGAGAAGGGG 60.045 66.667 0.00 0.00 0.00 4.79
1063 1067 2.751837 GCCGGCTTTGGAGAAGGG 60.752 66.667 22.15 0.00 0.00 3.95
1064 1068 3.127533 CGCCGGCTTTGGAGAAGG 61.128 66.667 26.68 0.00 0.00 3.46
1065 1069 3.127533 CCGCCGGCTTTGGAGAAG 61.128 66.667 26.68 4.88 0.00 2.85
1080 1084 2.470362 TAGAGACGAGGAAGCGCCG 61.470 63.158 2.29 1.74 43.43 6.46
1081 1085 1.064458 GTAGAGACGAGGAAGCGCC 59.936 63.158 2.29 0.00 33.86 6.53
1082 1086 1.064458 GGTAGAGACGAGGAAGCGC 59.936 63.158 0.00 0.00 33.86 5.92
1083 1087 0.378962 CTGGTAGAGACGAGGAAGCG 59.621 60.000 0.00 0.00 37.29 4.68
1084 1088 1.673920 CTCTGGTAGAGACGAGGAAGC 59.326 57.143 0.00 0.00 45.07 3.86
1085 1089 3.269538 TCTCTGGTAGAGACGAGGAAG 57.730 52.381 4.50 0.00 45.77 3.46
1095 1099 4.878968 TCTCTCTCTCTCTCTCTGGTAGA 58.121 47.826 0.00 0.00 0.00 2.59
1096 1100 4.895889 TCTCTCTCTCTCTCTCTCTGGTAG 59.104 50.000 0.00 0.00 0.00 3.18
1097 1101 4.878968 TCTCTCTCTCTCTCTCTCTGGTA 58.121 47.826 0.00 0.00 0.00 3.25
1098 1102 3.708631 CTCTCTCTCTCTCTCTCTCTGGT 59.291 52.174 0.00 0.00 0.00 4.00
1099 1103 3.963374 TCTCTCTCTCTCTCTCTCTCTGG 59.037 52.174 0.00 0.00 0.00 3.86
1100 1104 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
1562 1609 6.428159 GGAGATGCTCTAAGAACACAGAAAAA 59.572 38.462 0.00 0.00 0.00 1.94
1639 1686 5.635120 AGGGGAGGATATTGCTTTGATTAC 58.365 41.667 0.00 0.00 0.00 1.89
1958 2008 4.918201 ATTCCTAGCTGCGCCGGC 62.918 66.667 19.07 19.07 40.52 6.13
1959 2009 2.969238 CATTCCTAGCTGCGCCGG 60.969 66.667 4.18 0.00 0.00 6.13
1960 2010 1.953138 CTCATTCCTAGCTGCGCCG 60.953 63.158 4.18 0.00 0.00 6.46
1961 2011 2.250237 GCTCATTCCTAGCTGCGCC 61.250 63.158 4.18 0.00 37.01 6.53
1962 2012 3.328189 GCTCATTCCTAGCTGCGC 58.672 61.111 0.00 0.00 37.01 6.09
1967 2017 2.038659 ACTCCTGAGCTCATTCCTAGC 58.961 52.381 18.63 0.00 40.40 3.42
1968 2018 2.364970 CCACTCCTGAGCTCATTCCTAG 59.635 54.545 18.63 12.26 0.00 3.02
1969 2019 2.292521 ACCACTCCTGAGCTCATTCCTA 60.293 50.000 18.63 0.24 0.00 2.94
1970 2020 1.202330 CCACTCCTGAGCTCATTCCT 58.798 55.000 18.63 0.00 0.00 3.36
1971 2021 0.908198 ACCACTCCTGAGCTCATTCC 59.092 55.000 18.63 0.00 0.00 3.01
1972 2022 2.011046 GCACCACTCCTGAGCTCATTC 61.011 57.143 18.63 0.00 0.00 2.67
1973 2023 0.035630 GCACCACTCCTGAGCTCATT 60.036 55.000 18.63 0.00 0.00 2.57
1974 2024 1.196766 TGCACCACTCCTGAGCTCAT 61.197 55.000 18.63 0.00 0.00 2.90
1975 2025 1.838396 TGCACCACTCCTGAGCTCA 60.838 57.895 17.19 17.19 0.00 4.26
1976 2026 1.375268 GTGCACCACTCCTGAGCTC 60.375 63.158 6.82 6.82 0.00 4.09
1977 2027 2.746359 GTGCACCACTCCTGAGCT 59.254 61.111 5.22 0.00 0.00 4.09
1978 2028 2.359230 GGTGCACCACTCCTGAGC 60.359 66.667 31.23 0.00 34.40 4.26
1979 2029 2.047844 CGGTGCACCACTCCTGAG 60.048 66.667 34.16 12.56 34.40 3.35
1980 2030 2.099652 CTTCGGTGCACCACTCCTGA 62.100 60.000 34.16 19.58 34.40 3.86
1981 2031 1.669115 CTTCGGTGCACCACTCCTG 60.669 63.158 34.16 17.53 34.40 3.86
1982 2032 2.743718 CTTCGGTGCACCACTCCT 59.256 61.111 34.16 0.00 34.40 3.69
1983 2033 2.358737 CCTTCGGTGCACCACTCC 60.359 66.667 34.16 8.57 34.40 3.85
1984 2034 1.374758 CTCCTTCGGTGCACCACTC 60.375 63.158 34.16 8.76 34.40 3.51
1985 2035 2.743718 CTCCTTCGGTGCACCACT 59.256 61.111 34.16 0.00 34.40 4.00
1986 2036 3.050275 GCTCCTTCGGTGCACCAC 61.050 66.667 34.16 9.94 41.27 4.16
1987 2037 3.535629 CTGCTCCTTCGGTGCACCA 62.536 63.158 34.16 19.11 45.45 4.17
1988 2038 2.743928 CTGCTCCTTCGGTGCACC 60.744 66.667 26.78 26.78 45.45 5.01
1989 2039 3.426568 GCTGCTCCTTCGGTGCAC 61.427 66.667 8.80 8.80 45.45 4.57
2011 2061 4.918201 ATTCCTAGCTGCGCCGGC 62.918 66.667 19.07 19.07 40.52 6.13
2012 2062 2.969238 CATTCCTAGCTGCGCCGG 60.969 66.667 4.18 0.00 0.00 6.13
2013 2063 1.953138 CTCATTCCTAGCTGCGCCG 60.953 63.158 4.18 0.00 0.00 6.46
2014 2064 2.250237 GCTCATTCCTAGCTGCGCC 61.250 63.158 4.18 0.00 37.01 6.53
2015 2065 3.328189 GCTCATTCCTAGCTGCGC 58.672 61.111 0.00 0.00 37.01 6.09
2020 2070 0.396060 CCCCTGAGCTCATTCCTAGC 59.604 60.000 18.63 0.00 40.40 3.42
2021 2071 1.415659 CACCCCTGAGCTCATTCCTAG 59.584 57.143 18.63 3.96 0.00 3.02
2022 2072 1.500474 CACCCCTGAGCTCATTCCTA 58.500 55.000 18.63 0.00 0.00 2.94
2023 2073 1.277580 CCACCCCTGAGCTCATTCCT 61.278 60.000 18.63 0.00 0.00 3.36
2024 2074 1.225704 CCACCCCTGAGCTCATTCC 59.774 63.158 18.63 0.00 0.00 3.01
2025 2075 0.393537 CACCACCCCTGAGCTCATTC 60.394 60.000 18.63 0.00 0.00 2.67
2026 2076 1.687612 CACCACCCCTGAGCTCATT 59.312 57.895 18.63 0.00 0.00 2.57
2027 2077 2.976490 GCACCACCCCTGAGCTCAT 61.976 63.158 18.63 0.00 0.00 2.90
2028 2078 3.640407 GCACCACCCCTGAGCTCA 61.640 66.667 17.19 17.19 0.00 4.26
2029 2079 3.640407 TGCACCACCCCTGAGCTC 61.640 66.667 6.82 6.82 0.00 4.09
2030 2080 3.958860 GTGCACCACCCCTGAGCT 61.959 66.667 5.22 0.00 0.00 4.09
2039 2089 3.050275 GCTCCTTCGGTGCACCAC 61.050 66.667 34.16 9.94 41.27 4.16
2040 2090 3.535629 CTGCTCCTTCGGTGCACCA 62.536 63.158 34.16 19.11 45.45 4.17
2041 2091 2.743928 CTGCTCCTTCGGTGCACC 60.744 66.667 26.78 26.78 45.45 5.01
2042 2092 3.426568 GCTGCTCCTTCGGTGCAC 61.427 66.667 8.80 8.80 45.45 4.57
2048 2098 1.807573 GAAGACCGCTGCTCCTTCG 60.808 63.158 0.00 0.00 0.00 3.79
2049 2099 0.107945 ATGAAGACCGCTGCTCCTTC 60.108 55.000 14.37 14.37 36.48 3.46
2050 2100 0.392193 CATGAAGACCGCTGCTCCTT 60.392 55.000 0.00 0.00 0.00 3.36
2051 2101 1.220206 CATGAAGACCGCTGCTCCT 59.780 57.895 0.00 0.00 0.00 3.69
2052 2102 1.086634 GTCATGAAGACCGCTGCTCC 61.087 60.000 0.00 0.00 41.56 4.70
2053 2103 1.416813 CGTCATGAAGACCGCTGCTC 61.417 60.000 2.01 0.00 44.66 4.26
2054 2104 1.446792 CGTCATGAAGACCGCTGCT 60.447 57.895 2.01 0.00 44.66 4.24
2055 2105 1.687494 GACGTCATGAAGACCGCTGC 61.687 60.000 15.90 0.00 44.66 5.25
2056 2106 1.406219 CGACGTCATGAAGACCGCTG 61.406 60.000 17.16 0.00 44.66 5.18
2057 2107 1.154016 CGACGTCATGAAGACCGCT 60.154 57.895 17.16 0.00 44.66 5.52
2058 2108 1.154093 TCGACGTCATGAAGACCGC 60.154 57.895 17.16 2.41 44.66 5.68
2059 2109 1.126421 CGTCGACGTCATGAAGACCG 61.126 60.000 29.08 16.30 44.66 4.79
2060 2110 0.167470 TCGTCGACGTCATGAAGACC 59.833 55.000 34.40 5.80 44.66 3.85
2061 2111 1.525596 CTCGTCGACGTCATGAAGAC 58.474 55.000 34.40 12.81 44.02 3.01
2062 2112 0.179197 GCTCGTCGACGTCATGAAGA 60.179 55.000 34.40 14.13 40.80 2.87
2253 2304 0.322456 TAGCAGCAATTCCAGCCGTT 60.322 50.000 0.00 0.00 0.00 4.44
2259 2310 1.679139 CCCGATTAGCAGCAATTCCA 58.321 50.000 0.00 0.00 0.00 3.53
2271 2322 2.430382 GATCCGCCGAAGCCCGATTA 62.430 60.000 0.00 0.00 41.76 1.75
2548 2612 5.645497 AGCTCCAACTGAAGATGTTGTATTC 59.355 40.000 0.00 0.00 42.09 1.75
2725 2791 7.602644 GGCACATAATAATAGAGGAAACGATGA 59.397 37.037 0.00 0.00 0.00 2.92
2756 2822 6.080969 TCAACTAGAAGGATCCTACAGTCT 57.919 41.667 16.55 16.34 0.00 3.24
2786 2852 3.215151 TCAAAATGTTGGTGCGTAAGGA 58.785 40.909 0.00 0.00 35.29 3.36
2792 2858 3.003689 AGACTTCTCAAAATGTTGGTGCG 59.996 43.478 0.00 0.00 35.29 5.34
2795 2861 6.187727 TCCTAGACTTCTCAAAATGTTGGT 57.812 37.500 0.00 0.00 35.29 3.67
3100 3268 6.127281 CCATTCCTGTTTCATCAAATCATCCA 60.127 38.462 0.00 0.00 0.00 3.41
3737 4015 0.392461 AACGCACGGGCATGATTAGT 60.392 50.000 11.77 0.00 41.24 2.24
3738 4016 0.027979 CAACGCACGGGCATGATTAG 59.972 55.000 11.77 0.00 41.24 1.73
3739 4017 1.372838 CCAACGCACGGGCATGATTA 61.373 55.000 11.77 0.00 41.24 1.75
3811 4130 6.128391 TGTGTTCAAATAAAGGACGCTCATAC 60.128 38.462 0.00 0.00 0.00 2.39
3824 4143 3.496884 GGCGAGTCACTGTGTTCAAATAA 59.503 43.478 7.79 0.00 0.00 1.40
3830 4149 0.792640 CATGGCGAGTCACTGTGTTC 59.207 55.000 7.79 6.37 0.00 3.18
4086 4424 2.689785 CGGCCCGTAGTACGTGACA 61.690 63.158 20.60 0.00 40.58 3.58
4257 4698 6.385759 TGGGAAGAAAGATAAGTGGCAGTATA 59.614 38.462 0.00 0.00 0.00 1.47
4260 4701 3.330701 TGGGAAGAAAGATAAGTGGCAGT 59.669 43.478 0.00 0.00 0.00 4.40
4261 4702 3.955471 TGGGAAGAAAGATAAGTGGCAG 58.045 45.455 0.00 0.00 0.00 4.85
4307 4748 6.072563 TGTCGAATATATTGCAATCACATGGG 60.073 38.462 16.86 0.00 0.00 4.00
4311 4752 6.486320 ACCATGTCGAATATATTGCAATCACA 59.514 34.615 16.86 9.41 0.00 3.58
4384 4834 4.670221 GCGAGTTTGTGGTTCATGAGATTC 60.670 45.833 0.00 0.00 0.00 2.52
4462 4915 6.086241 CGTGTATCCAAAACAAATTCGTGAAG 59.914 38.462 0.00 0.00 0.00 3.02
4590 5056 8.161754 AGAATCATAAAATTTTCGCAGTTTCG 57.838 30.769 6.72 0.00 0.00 3.46
4615 5082 6.875726 TGTTTGTGATTTCAAAAATGTGTGGA 59.124 30.769 0.00 0.00 38.71 4.02
4720 5229 9.541143 TCTTTTGTCTTTTGTCTTTTGTCTTTT 57.459 25.926 0.00 0.00 0.00 2.27
4721 5230 8.978539 GTCTTTTGTCTTTTGTCTTTTGTCTTT 58.021 29.630 0.00 0.00 0.00 2.52
4722 5231 8.141268 TGTCTTTTGTCTTTTGTCTTTTGTCTT 58.859 29.630 0.00 0.00 0.00 3.01
4731 5240 7.059448 TGCATTTTGTCTTTTGTCTTTTGTC 57.941 32.000 0.00 0.00 0.00 3.18
4733 5242 8.725212 TTTTGCATTTTGTCTTTTGTCTTTTG 57.275 26.923 0.00 0.00 0.00 2.44
4844 5372 2.162681 CCAGGTTTCGCTGATTTTCCT 58.837 47.619 0.00 0.00 0.00 3.36
4884 5412 1.279271 ACAGCCTGTCTAATCCACCAC 59.721 52.381 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.