Multiple sequence alignment - TraesCS6A01G181800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G181800 chr6A 100.000 3014 0 0 1 3014 209103647 209106660 0.000000e+00 5566
1 TraesCS6A01G181800 chr6A 84.882 1700 191 34 654 2312 314879645 314881319 0.000000e+00 1655
2 TraesCS6A01G181800 chr4D 87.681 2346 215 31 2 2312 220990611 220992917 0.000000e+00 2663
3 TraesCS6A01G181800 chr4D 87.362 2081 200 33 247 2312 358038290 358036258 0.000000e+00 2327
4 TraesCS6A01G181800 chr4D 86.022 2182 253 33 148 2316 292849127 292851269 0.000000e+00 2292
5 TraesCS6A01G181800 chr4D 84.149 2309 272 46 39 2312 275357198 275359447 0.000000e+00 2150
6 TraesCS6A01G181800 chr4D 86.014 715 62 23 2307 3014 292851410 292852093 0.000000e+00 732
7 TraesCS6A01G181800 chr2D 88.362 2174 181 32 170 2312 209709690 209707558 0.000000e+00 2547
8 TraesCS6A01G181800 chr3D 88.238 2151 202 27 171 2312 197127751 197125643 0.000000e+00 2523
9 TraesCS6A01G181800 chr3D 88.036 1538 163 14 240 1774 226750827 226749308 0.000000e+00 1801
10 TraesCS6A01G181800 chr2B 86.003 2229 238 39 103 2309 388225661 388227837 0.000000e+00 2320
11 TraesCS6A01G181800 chr2B 84.542 1779 214 33 8 1774 295831965 295833694 0.000000e+00 1705
12 TraesCS6A01G181800 chr2B 84.130 1046 127 16 14 1055 298275450 298276460 0.000000e+00 976
13 TraesCS6A01G181800 chr2B 80.454 573 88 21 1747 2312 279188243 279187688 1.670000e-112 416
14 TraesCS6A01G181800 chr2B 85.783 415 22 5 2307 2714 272993135 272992751 3.620000e-109 405
15 TraesCS6A01G181800 chr2B 79.930 573 91 21 1747 2312 405162903 405163458 1.680000e-107 399
16 TraesCS6A01G181800 chr2A 85.208 2285 251 47 59 2312 343446890 343444662 0.000000e+00 2266
17 TraesCS6A01G181800 chr2A 87.516 1522 148 13 241 1758 82414726 82413243 0.000000e+00 1720
18 TraesCS6A01G181800 chr2A 93.935 709 41 2 2307 3014 267982485 267983192 0.000000e+00 1070
19 TraesCS6A01G181800 chr3B 84.310 2339 272 49 12 2312 645181389 645183670 0.000000e+00 2198
20 TraesCS6A01G181800 chr3B 83.534 2320 303 45 12 2311 128996221 128993961 0.000000e+00 2095
21 TraesCS6A01G181800 chr7B 84.183 2333 293 44 1 2312 638612186 638609909 0.000000e+00 2194
22 TraesCS6A01G181800 chr7B 85.040 1738 203 29 13 1740 233948740 233950430 0.000000e+00 1716
23 TraesCS6A01G181800 chr6D 84.470 2273 261 50 60 2312 384975569 384977769 0.000000e+00 2158
24 TraesCS6A01G181800 chr6D 92.254 710 49 5 2307 3014 283633655 283632950 0.000000e+00 1002
25 TraesCS6A01G181800 chr7A 83.479 2294 298 35 59 2312 396205123 396202871 0.000000e+00 2061
26 TraesCS6A01G181800 chr7A 93.521 710 43 3 2307 3014 396165462 396164754 0.000000e+00 1053
27 TraesCS6A01G181800 chr3A 86.658 1574 168 13 217 1786 167683679 167682144 0.000000e+00 1705
28 TraesCS6A01G181800 chr3A 92.384 709 49 3 2307 3014 388271134 388271838 0.000000e+00 1005
29 TraesCS6A01G181800 chr3A 89.379 725 46 15 2307 3014 179906405 179905695 0.000000e+00 883
30 TraesCS6A01G181800 chr3A 89.335 722 52 11 2307 3014 417631627 417630917 0.000000e+00 883
31 TraesCS6A01G181800 chr3A 86.406 743 52 29 2307 3014 392547633 392548361 0.000000e+00 767
32 TraesCS6A01G181800 chr3A 89.320 412 37 7 2307 2714 46664901 46664493 7.450000e-141 510
33 TraesCS6A01G181800 chr3A 82.626 495 71 10 1826 2312 179907038 179906551 9.990000e-115 424
34 TraesCS6A01G181800 chr3A 84.722 288 25 8 2307 2589 417634386 417634113 1.380000e-68 270
35 TraesCS6A01G181800 chr4A 90.696 1107 74 12 8 1114 347927482 347928559 0.000000e+00 1447
36 TraesCS6A01G181800 chr4A 83.939 990 131 15 1335 2312 500279481 500278508 0.000000e+00 922
37 TraesCS6A01G181800 chr1A 94.085 710 39 3 2307 3014 313567575 313566867 0.000000e+00 1075
38 TraesCS6A01G181800 chr1A 93.436 716 38 4 2307 3014 58160102 58159388 0.000000e+00 1053
39 TraesCS6A01G181800 chr1A 84.774 729 80 22 2307 3014 228519884 228520602 0.000000e+00 702
40 TraesCS6A01G181800 chr1B 92.254 710 51 4 2307 3014 102610849 102610142 0.000000e+00 1003
41 TraesCS6A01G181800 chr1B 91.049 715 53 9 2303 3014 163652431 163651725 0.000000e+00 955
42 TraesCS6A01G181800 chr6B 90.819 708 59 6 2307 3011 471278293 471278997 0.000000e+00 942
43 TraesCS6A01G181800 chr5A 85.404 322 32 10 1999 2312 681685781 681685467 1.350000e-83 320
44 TraesCS6A01G181800 chr5A 84.783 322 34 10 1999 2312 683812302 683812616 2.920000e-80 309
45 TraesCS6A01G181800 chr5A 94.937 158 6 1 2307 2462 229790644 229790801 2.320000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G181800 chr6A 209103647 209106660 3013 False 5566.0 5566 100.0000 1 3014 1 chr6A.!!$F1 3013
1 TraesCS6A01G181800 chr6A 314879645 314881319 1674 False 1655.0 1655 84.8820 654 2312 1 chr6A.!!$F2 1658
2 TraesCS6A01G181800 chr4D 220990611 220992917 2306 False 2663.0 2663 87.6810 2 2312 1 chr4D.!!$F1 2310
3 TraesCS6A01G181800 chr4D 358036258 358038290 2032 True 2327.0 2327 87.3620 247 2312 1 chr4D.!!$R1 2065
4 TraesCS6A01G181800 chr4D 275357198 275359447 2249 False 2150.0 2150 84.1490 39 2312 1 chr4D.!!$F2 2273
5 TraesCS6A01G181800 chr4D 292849127 292852093 2966 False 1512.0 2292 86.0180 148 3014 2 chr4D.!!$F3 2866
6 TraesCS6A01G181800 chr2D 209707558 209709690 2132 True 2547.0 2547 88.3620 170 2312 1 chr2D.!!$R1 2142
7 TraesCS6A01G181800 chr3D 197125643 197127751 2108 True 2523.0 2523 88.2380 171 2312 1 chr3D.!!$R1 2141
8 TraesCS6A01G181800 chr3D 226749308 226750827 1519 True 1801.0 1801 88.0360 240 1774 1 chr3D.!!$R2 1534
9 TraesCS6A01G181800 chr2B 388225661 388227837 2176 False 2320.0 2320 86.0030 103 2309 1 chr2B.!!$F3 2206
10 TraesCS6A01G181800 chr2B 295831965 295833694 1729 False 1705.0 1705 84.5420 8 1774 1 chr2B.!!$F1 1766
11 TraesCS6A01G181800 chr2B 298275450 298276460 1010 False 976.0 976 84.1300 14 1055 1 chr2B.!!$F2 1041
12 TraesCS6A01G181800 chr2B 279187688 279188243 555 True 416.0 416 80.4540 1747 2312 1 chr2B.!!$R2 565
13 TraesCS6A01G181800 chr2B 405162903 405163458 555 False 399.0 399 79.9300 1747 2312 1 chr2B.!!$F4 565
14 TraesCS6A01G181800 chr2A 343444662 343446890 2228 True 2266.0 2266 85.2080 59 2312 1 chr2A.!!$R2 2253
15 TraesCS6A01G181800 chr2A 82413243 82414726 1483 True 1720.0 1720 87.5160 241 1758 1 chr2A.!!$R1 1517
16 TraesCS6A01G181800 chr2A 267982485 267983192 707 False 1070.0 1070 93.9350 2307 3014 1 chr2A.!!$F1 707
17 TraesCS6A01G181800 chr3B 645181389 645183670 2281 False 2198.0 2198 84.3100 12 2312 1 chr3B.!!$F1 2300
18 TraesCS6A01G181800 chr3B 128993961 128996221 2260 True 2095.0 2095 83.5340 12 2311 1 chr3B.!!$R1 2299
19 TraesCS6A01G181800 chr7B 638609909 638612186 2277 True 2194.0 2194 84.1830 1 2312 1 chr7B.!!$R1 2311
20 TraesCS6A01G181800 chr7B 233948740 233950430 1690 False 1716.0 1716 85.0400 13 1740 1 chr7B.!!$F1 1727
21 TraesCS6A01G181800 chr6D 384975569 384977769 2200 False 2158.0 2158 84.4700 60 2312 1 chr6D.!!$F1 2252
22 TraesCS6A01G181800 chr6D 283632950 283633655 705 True 1002.0 1002 92.2540 2307 3014 1 chr6D.!!$R1 707
23 TraesCS6A01G181800 chr7A 396202871 396205123 2252 True 2061.0 2061 83.4790 59 2312 1 chr7A.!!$R2 2253
24 TraesCS6A01G181800 chr7A 396164754 396165462 708 True 1053.0 1053 93.5210 2307 3014 1 chr7A.!!$R1 707
25 TraesCS6A01G181800 chr3A 167682144 167683679 1535 True 1705.0 1705 86.6580 217 1786 1 chr3A.!!$R2 1569
26 TraesCS6A01G181800 chr3A 388271134 388271838 704 False 1005.0 1005 92.3840 2307 3014 1 chr3A.!!$F1 707
27 TraesCS6A01G181800 chr3A 392547633 392548361 728 False 767.0 767 86.4060 2307 3014 1 chr3A.!!$F2 707
28 TraesCS6A01G181800 chr3A 179905695 179907038 1343 True 653.5 883 86.0025 1826 3014 2 chr3A.!!$R3 1188
29 TraesCS6A01G181800 chr3A 417630917 417634386 3469 True 576.5 883 87.0285 2307 3014 2 chr3A.!!$R4 707
30 TraesCS6A01G181800 chr4A 347927482 347928559 1077 False 1447.0 1447 90.6960 8 1114 1 chr4A.!!$F1 1106
31 TraesCS6A01G181800 chr4A 500278508 500279481 973 True 922.0 922 83.9390 1335 2312 1 chr4A.!!$R1 977
32 TraesCS6A01G181800 chr1A 313566867 313567575 708 True 1075.0 1075 94.0850 2307 3014 1 chr1A.!!$R2 707
33 TraesCS6A01G181800 chr1A 58159388 58160102 714 True 1053.0 1053 93.4360 2307 3014 1 chr1A.!!$R1 707
34 TraesCS6A01G181800 chr1A 228519884 228520602 718 False 702.0 702 84.7740 2307 3014 1 chr1A.!!$F1 707
35 TraesCS6A01G181800 chr1B 102610142 102610849 707 True 1003.0 1003 92.2540 2307 3014 1 chr1B.!!$R1 707
36 TraesCS6A01G181800 chr1B 163651725 163652431 706 True 955.0 955 91.0490 2303 3014 1 chr1B.!!$R2 711
37 TraesCS6A01G181800 chr6B 471278293 471278997 704 False 942.0 942 90.8190 2307 3011 1 chr6B.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 393 0.73288 CGAGTGACCGTGTTAGGCTG 60.733 60.0 0.0 0.0 33.69 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2129 0.318699 TCACTCTTCTTCGCGTGTGG 60.319 55.0 5.77 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 337 3.832615 AAACCCCCGCTATACTTACAG 57.167 47.619 0.00 0.00 0.00 2.74
363 393 0.732880 CGAGTGACCGTGTTAGGCTG 60.733 60.000 0.00 0.00 33.69 4.85
430 466 9.670442 TTTGTGATATATCTCTTACCCCTAACT 57.330 33.333 13.79 0.00 0.00 2.24
629 668 3.433615 CAGCGAGAAGTAGTTTTTGAGGG 59.566 47.826 0.00 0.00 0.00 4.30
630 669 3.071167 AGCGAGAAGTAGTTTTTGAGGGT 59.929 43.478 0.00 0.00 0.00 4.34
631 670 4.282703 AGCGAGAAGTAGTTTTTGAGGGTA 59.717 41.667 0.00 0.00 0.00 3.69
632 671 4.626172 GCGAGAAGTAGTTTTTGAGGGTAG 59.374 45.833 0.00 0.00 0.00 3.18
633 672 5.169295 CGAGAAGTAGTTTTTGAGGGTAGG 58.831 45.833 0.00 0.00 0.00 3.18
634 673 4.907809 AGAAGTAGTTTTTGAGGGTAGGC 58.092 43.478 0.00 0.00 0.00 3.93
635 674 4.597940 AGAAGTAGTTTTTGAGGGTAGGCT 59.402 41.667 0.00 0.00 0.00 4.58
636 675 4.995624 AGTAGTTTTTGAGGGTAGGCTT 57.004 40.909 0.00 0.00 0.00 4.35
637 676 6.271624 AGAAGTAGTTTTTGAGGGTAGGCTTA 59.728 38.462 0.00 0.00 0.00 3.09
638 677 6.051179 AGTAGTTTTTGAGGGTAGGCTTAG 57.949 41.667 0.00 0.00 0.00 2.18
639 678 3.687125 AGTTTTTGAGGGTAGGCTTAGC 58.313 45.455 0.00 0.00 0.00 3.09
640 679 3.330998 AGTTTTTGAGGGTAGGCTTAGCT 59.669 43.478 3.59 0.00 0.00 3.32
641 680 3.629142 TTTTGAGGGTAGGCTTAGCTC 57.371 47.619 3.59 2.04 0.00 4.09
642 681 2.552093 TTGAGGGTAGGCTTAGCTCT 57.448 50.000 3.59 2.25 0.00 4.09
643 682 2.552093 TGAGGGTAGGCTTAGCTCTT 57.448 50.000 3.59 0.00 0.00 2.85
644 683 3.682592 TGAGGGTAGGCTTAGCTCTTA 57.317 47.619 3.59 0.00 0.00 2.10
645 684 4.200447 TGAGGGTAGGCTTAGCTCTTAT 57.800 45.455 3.59 0.00 0.00 1.73
646 685 3.898123 TGAGGGTAGGCTTAGCTCTTATG 59.102 47.826 3.59 0.00 0.00 1.90
647 686 4.153411 GAGGGTAGGCTTAGCTCTTATGA 58.847 47.826 3.59 0.00 0.00 2.15
648 687 4.757692 AGGGTAGGCTTAGCTCTTATGAT 58.242 43.478 3.59 0.00 0.00 2.45
649 688 4.775253 AGGGTAGGCTTAGCTCTTATGATC 59.225 45.833 3.59 0.00 0.00 2.92
650 689 4.081365 GGGTAGGCTTAGCTCTTATGATCC 60.081 50.000 3.59 0.00 0.00 3.36
651 690 4.775253 GGTAGGCTTAGCTCTTATGATCCT 59.225 45.833 3.59 0.00 0.00 3.24
652 691 5.247337 GGTAGGCTTAGCTCTTATGATCCTT 59.753 44.000 3.59 0.00 0.00 3.36
769 832 3.296854 TGTCAGTGTGGTTACTCTCACT 58.703 45.455 0.00 0.00 41.02 3.41
1159 1243 5.401531 TCCAATTAGGCCGATGATACTAC 57.598 43.478 0.00 0.00 37.29 2.73
1190 1274 6.000219 TGAAGAAGATCAAGAGTGGAAAAGG 59.000 40.000 0.00 0.00 0.00 3.11
1231 1315 6.537355 AGGAAGATTGAGAAGAACATCAACA 58.463 36.000 0.00 0.00 38.19 3.33
1320 1407 1.270550 CCAACACCTTCACATTCAGCC 59.729 52.381 0.00 0.00 0.00 4.85
1348 1435 2.509166 TAGCGAGAGTCCAGAGGAAA 57.491 50.000 0.00 0.00 31.38 3.13
1366 1453 7.279758 CAGAGGAAAAGATACTTCAGATCCAAC 59.720 40.741 0.00 0.00 0.00 3.77
1512 1600 7.984422 TGAAGATGAAGAACTAGAAATGCAA 57.016 32.000 0.00 0.00 0.00 4.08
1557 1645 4.733887 CGTGACGTAGCAGGTTTATCTAAG 59.266 45.833 0.00 0.00 0.00 2.18
1624 1712 5.534407 TGCATTGCATGATACCATCAATTC 58.466 37.500 7.38 0.00 43.50 2.17
1687 1775 5.957774 ACATACCCTGTTATTGGCATTTCTT 59.042 36.000 0.00 0.00 32.90 2.52
1727 1821 8.301002 CACTTATTCTCCTTATGCTAGTCCTAC 58.699 40.741 0.00 0.00 0.00 3.18
1765 1861 3.776969 TCATTCCCATGCTAGTCTTGAGT 59.223 43.478 0.00 0.00 0.00 3.41
1809 1905 4.128925 TGGTAGTATTGAGCTTGCTGAG 57.871 45.455 0.00 0.00 0.00 3.35
1816 1912 3.751479 TTGAGCTTGCTGAGTTCTACA 57.249 42.857 0.00 0.00 36.63 2.74
1820 1916 4.020751 TGAGCTTGCTGAGTTCTACAATCT 60.021 41.667 0.00 0.00 36.63 2.40
1887 1983 6.369890 CGATTGATGACTTGGAGGGTATTATG 59.630 42.308 0.00 0.00 0.00 1.90
2030 2129 1.674962 GTGATGAGGAGAAGCAATGGC 59.325 52.381 0.00 0.00 41.61 4.40
2066 2170 2.044252 AAGCTGGAGCAGGCATGG 60.044 61.111 0.00 0.00 45.16 3.66
2091 2198 6.881602 GGGATAGAGAAGCAAAAAGAGAAGAA 59.118 38.462 0.00 0.00 0.00 2.52
2101 2214 4.827304 AAAAGAGAAGAACTGCAGAAGC 57.173 40.909 23.35 8.92 42.57 3.86
2202 2317 9.709495 TGCTTGCTGAATTAAATTTCTATTTGT 57.291 25.926 0.00 0.00 35.61 2.83
2262 2381 5.975693 TTTCACCTTTGACATATGGTTCC 57.024 39.130 7.80 0.00 0.00 3.62
2273 2398 6.293698 TGACATATGGTTCCTGATGAGAATG 58.706 40.000 7.80 0.00 0.00 2.67
2282 2409 3.447229 TCCTGATGAGAATGTGCGAACTA 59.553 43.478 0.00 0.00 0.00 2.24
2344 2622 5.606749 AGCAATCACCTAACCACTATGGATA 59.393 40.000 0.84 0.00 40.96 2.59
2924 6050 3.009723 GCTAAGTCCAAAGCATGCACTA 58.990 45.455 21.98 0.00 38.63 2.74
2993 6120 6.175471 TCACATTCTTGCTCTTGTCATATGT 58.825 36.000 1.90 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 337 1.587088 CGGCGCCAAAATGATCAGC 60.587 57.895 28.98 0.00 0.00 4.26
363 393 6.706716 AGAAACAGAAGCAAAACCTAGTCTAC 59.293 38.462 0.00 0.00 0.00 2.59
629 668 5.993748 AGGATCATAAGAGCTAAGCCTAC 57.006 43.478 0.00 0.00 0.00 3.18
630 669 9.415008 CTATAAGGATCATAAGAGCTAAGCCTA 57.585 37.037 0.00 0.00 0.00 3.93
631 670 7.344352 CCTATAAGGATCATAAGAGCTAAGCCT 59.656 40.741 0.00 0.00 37.67 4.58
632 671 7.496747 CCTATAAGGATCATAAGAGCTAAGCC 58.503 42.308 0.00 0.00 37.67 4.35
633 672 6.983890 GCCTATAAGGATCATAAGAGCTAAGC 59.016 42.308 0.00 0.00 37.67 3.09
634 673 7.344352 AGGCCTATAAGGATCATAAGAGCTAAG 59.656 40.741 1.29 0.00 37.67 2.18
635 674 7.192628 AGGCCTATAAGGATCATAAGAGCTAA 58.807 38.462 1.29 0.00 37.67 3.09
636 675 6.746894 AGGCCTATAAGGATCATAAGAGCTA 58.253 40.000 1.29 0.00 37.67 3.32
637 676 5.598754 AGGCCTATAAGGATCATAAGAGCT 58.401 41.667 1.29 0.00 37.67 4.09
638 677 5.948742 AGGCCTATAAGGATCATAAGAGC 57.051 43.478 1.29 0.00 37.67 4.09
639 678 6.838612 AGCTAGGCCTATAAGGATCATAAGAG 59.161 42.308 14.30 0.00 37.67 2.85
640 679 6.746894 AGCTAGGCCTATAAGGATCATAAGA 58.253 40.000 14.30 0.00 37.67 2.10
641 680 6.838612 AGAGCTAGGCCTATAAGGATCATAAG 59.161 42.308 14.30 0.00 37.67 1.73
642 681 6.746894 AGAGCTAGGCCTATAAGGATCATAA 58.253 40.000 14.30 0.00 37.67 1.90
643 682 6.348478 AGAGCTAGGCCTATAAGGATCATA 57.652 41.667 14.30 0.00 37.67 2.15
644 683 5.219468 AGAGCTAGGCCTATAAGGATCAT 57.781 43.478 14.30 0.00 37.67 2.45
645 684 4.683766 AGAGCTAGGCCTATAAGGATCA 57.316 45.455 14.30 0.00 37.67 2.92
646 685 6.836527 TCATAAGAGCTAGGCCTATAAGGATC 59.163 42.308 14.30 9.92 37.67 3.36
647 686 6.746894 TCATAAGAGCTAGGCCTATAAGGAT 58.253 40.000 14.30 0.00 37.67 3.24
648 687 6.153942 TCATAAGAGCTAGGCCTATAAGGA 57.846 41.667 14.30 2.38 37.67 3.36
649 688 6.041523 GGATCATAAGAGCTAGGCCTATAAGG 59.958 46.154 14.30 2.23 38.80 2.69
650 689 6.838612 AGGATCATAAGAGCTAGGCCTATAAG 59.161 42.308 14.30 4.52 0.00 1.73
651 690 6.746894 AGGATCATAAGAGCTAGGCCTATAA 58.253 40.000 14.30 0.00 0.00 0.98
652 691 6.348478 AGGATCATAAGAGCTAGGCCTATA 57.652 41.667 14.30 2.34 0.00 1.31
744 807 4.588951 TGAGAGTAACCACACTGACATTCT 59.411 41.667 0.00 0.00 0.00 2.40
769 832 2.437651 TCATGCCATAACAATCGGGAGA 59.562 45.455 0.00 0.00 46.90 3.71
1159 1243 6.093771 CCACTCTTGATCTTCTTCATTTCCTG 59.906 42.308 0.00 0.00 0.00 3.86
1190 1274 4.466726 TCTTCCTTACTTCTTCCACTAGCC 59.533 45.833 0.00 0.00 0.00 3.93
1231 1315 1.415659 GGATGAGATAGTGCAGCCAGT 59.584 52.381 0.00 0.00 40.20 4.00
1320 1407 1.334599 GGACTCTCGCTATCTTGCTCG 60.335 57.143 0.00 0.00 0.00 5.03
1348 1435 9.525826 AATTTCTTGTTGGATCTGAAGTATCTT 57.474 29.630 0.00 0.00 0.00 2.40
1366 1453 3.992427 GCCTTGGCTTTGAGAATTTCTTG 59.008 43.478 4.11 0.00 0.00 3.02
1509 1597 6.564709 TCTTGTATGATGATAGGCAATTGC 57.435 37.500 22.47 22.47 41.14 3.56
1512 1600 4.934001 CGCTCTTGTATGATGATAGGCAAT 59.066 41.667 0.00 0.00 0.00 3.56
1557 1645 0.654683 GACGCATGTCATCAAGAGGC 59.345 55.000 0.00 0.00 44.82 4.70
1727 1821 6.969366 TGGGAATGATATGTTTCATTAAGCG 58.031 36.000 0.00 0.00 44.35 4.68
1790 1886 5.415221 AGAACTCAGCAAGCTCAATACTAC 58.585 41.667 0.00 0.00 0.00 2.73
1887 1983 1.026718 AGACAATGCAAGCGGTAGGC 61.027 55.000 0.00 4.41 44.05 3.93
2030 2129 0.318699 TCACTCTTCTTCGCGTGTGG 60.319 55.000 5.77 0.00 0.00 4.17
2066 2170 6.410540 TCTTCTCTTTTTGCTTCTCTATCCC 58.589 40.000 0.00 0.00 0.00 3.85
2091 2198 2.313172 CGCTCAACGCTTCTGCAGT 61.313 57.895 14.67 0.00 39.64 4.40
2121 2235 2.563179 ACAGCTCACCGGGCTTATATAG 59.437 50.000 6.32 0.00 38.03 1.31
2122 2236 2.605257 ACAGCTCACCGGGCTTATATA 58.395 47.619 6.32 0.00 38.03 0.86
2262 2381 5.980698 ATTAGTTCGCACATTCTCATCAG 57.019 39.130 0.00 0.00 0.00 2.90
2273 2398 3.608073 GGCATTCAACAATTAGTTCGCAC 59.392 43.478 0.00 0.00 38.74 5.34
2282 2409 7.867403 CACTAGTTTACAAGGCATTCAACAATT 59.133 33.333 0.00 0.00 0.00 2.32
2344 2622 1.565759 TCCAGGGAACATAGCATGCTT 59.434 47.619 28.02 7.58 0.00 3.91
2732 5839 7.042797 ACAAAAAGAGCATACACTTGTGATT 57.957 32.000 7.83 0.00 0.00 2.57
2747 5860 5.350914 AGCATGATCTCGAGAACAAAAAGAG 59.649 40.000 26.43 14.10 30.66 2.85
2924 6050 7.187824 TGCCAAGTGAAGTAGATCTCTAAAT 57.812 36.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.