Multiple sequence alignment - TraesCS6A01G181500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G181500 chr6A 100.000 2982 0 0 1 2982 207761843 207764824 0.000000e+00 5507.0
1 TraesCS6A01G181500 chr6A 96.053 380 15 0 2603 2982 215326968 215326589 1.170000e-173 619.0
2 TraesCS6A01G181500 chr6A 87.209 86 8 3 2440 2524 4715107 4715190 8.800000e-16 95.3
3 TraesCS6A01G181500 chr6A 89.062 64 4 3 2625 2686 176285285 176285347 3.190000e-10 76.8
4 TraesCS6A01G181500 chr6D 91.404 1524 53 31 833 2327 154359148 154360622 0.000000e+00 2017.0
5 TraesCS6A01G181500 chr6D 88.462 130 11 4 747 873 154359092 154359220 1.430000e-33 154.0
6 TraesCS6A01G181500 chr6B 92.540 1260 36 27 831 2058 277848297 277849530 0.000000e+00 1753.0
7 TraesCS6A01G181500 chr6B 85.847 862 70 27 30 873 277847543 277848370 0.000000e+00 869.0
8 TraesCS6A01G181500 chr6B 89.045 639 49 12 1 636 123722181 123722801 0.000000e+00 773.0
9 TraesCS6A01G181500 chr6B 82.456 342 14 15 2012 2327 277849531 277849852 1.060000e-64 257.0
10 TraesCS6A01G181500 chr6B 97.674 43 1 0 800 842 277848328 277848370 1.150000e-09 75.0
11 TraesCS6A01G181500 chr5A 88.088 638 54 8 1 634 35130262 35129643 0.000000e+00 737.0
12 TraesCS6A01G181500 chr5A 90.667 75 7 0 2449 2523 446636236 446636310 1.890000e-17 100.0
13 TraesCS6A01G181500 chr5D 87.656 640 60 7 1 636 457787138 457786514 0.000000e+00 726.0
14 TraesCS6A01G181500 chr2A 87.309 654 49 10 1 636 653855336 653855973 0.000000e+00 717.0
15 TraesCS6A01G181500 chr2A 98.214 56 0 1 2543 2597 626004550 626004495 2.450000e-16 97.1
16 TraesCS6A01G181500 chr7D 87.324 639 56 11 1 635 36197079 36197696 0.000000e+00 708.0
17 TraesCS6A01G181500 chr7D 86.018 658 48 13 1 631 197696045 197696685 0.000000e+00 665.0
18 TraesCS6A01G181500 chr7D 87.556 450 40 4 1 443 618059485 618059045 9.540000e-140 507.0
19 TraesCS6A01G181500 chr7D 93.596 203 10 2 438 637 618056848 618056646 1.740000e-77 300.0
20 TraesCS6A01G181500 chr5B 87.582 612 53 11 59 663 72089323 72089918 0.000000e+00 688.0
21 TraesCS6A01G181500 chr4A 96.703 364 12 0 2619 2982 165836771 165836408 9.140000e-170 606.0
22 TraesCS6A01G181500 chr4B 85.791 556 47 8 98 636 660964776 660964236 7.220000e-156 560.0
23 TraesCS6A01G181500 chr4B 89.157 83 8 1 2441 2523 86761717 86761636 5.260000e-18 102.0
24 TraesCS6A01G181500 chr3D 94.005 367 19 2 2619 2982 48164076 48163710 1.210000e-153 553.0
25 TraesCS6A01G181500 chr3D 93.151 365 23 2 2619 2982 91817787 91817424 4.380000e-148 534.0
26 TraesCS6A01G181500 chr3D 77.586 116 24 2 2334 2448 277218806 277218920 5.330000e-08 69.4
27 TraesCS6A01G181500 chr2D 93.531 371 23 1 2613 2982 553901504 553901874 4.340000e-153 551.0
28 TraesCS6A01G181500 chr2D 80.061 326 53 11 2661 2981 460329882 460329564 6.430000e-57 231.0
29 TraesCS6A01G181500 chr2D 96.429 56 1 1 2543 2597 483174662 483174607 1.140000e-14 91.6
30 TraesCS6A01G181500 chr3A 90.541 370 34 1 2613 2982 175738165 175738533 3.450000e-134 488.0
31 TraesCS6A01G181500 chr1D 88.571 350 40 0 2633 2982 159514701 159514352 2.750000e-115 425.0
32 TraesCS6A01G181500 chr4D 95.238 84 4 0 2899 2982 277431135 277431052 1.860000e-27 134.0
33 TraesCS6A01G181500 chr4D 88.608 79 9 0 2447 2525 327147809 327147887 2.450000e-16 97.1
34 TraesCS6A01G181500 chr1B 90.000 80 7 1 2447 2525 625208692 625208613 5.260000e-18 102.0
35 TraesCS6A01G181500 chr1B 88.750 80 9 0 2447 2526 654133583 654133662 6.800000e-17 99.0
36 TraesCS6A01G181500 chr7A 88.889 81 9 0 2446 2526 592300568 592300488 1.890000e-17 100.0
37 TraesCS6A01G181500 chr7A 87.805 82 10 0 2444 2525 285412812 285412893 2.450000e-16 97.1
38 TraesCS6A01G181500 chr2B 89.610 77 8 0 2447 2523 380511999 380512075 6.800000e-17 99.0
39 TraesCS6A01G181500 chr2B 96.429 56 1 1 2543 2597 568039190 568039135 1.140000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G181500 chr6A 207761843 207764824 2981 False 5507.0 5507 100.00000 1 2982 1 chr6A.!!$F3 2981
1 TraesCS6A01G181500 chr6D 154359092 154360622 1530 False 1085.5 2017 89.93300 747 2327 2 chr6D.!!$F1 1580
2 TraesCS6A01G181500 chr6B 123722181 123722801 620 False 773.0 773 89.04500 1 636 1 chr6B.!!$F1 635
3 TraesCS6A01G181500 chr6B 277847543 277849852 2309 False 738.5 1753 89.62925 30 2327 4 chr6B.!!$F2 2297
4 TraesCS6A01G181500 chr5A 35129643 35130262 619 True 737.0 737 88.08800 1 634 1 chr5A.!!$R1 633
5 TraesCS6A01G181500 chr5D 457786514 457787138 624 True 726.0 726 87.65600 1 636 1 chr5D.!!$R1 635
6 TraesCS6A01G181500 chr2A 653855336 653855973 637 False 717.0 717 87.30900 1 636 1 chr2A.!!$F1 635
7 TraesCS6A01G181500 chr7D 36197079 36197696 617 False 708.0 708 87.32400 1 635 1 chr7D.!!$F1 634
8 TraesCS6A01G181500 chr7D 197696045 197696685 640 False 665.0 665 86.01800 1 631 1 chr7D.!!$F2 630
9 TraesCS6A01G181500 chr7D 618056646 618059485 2839 True 403.5 507 90.57600 1 637 2 chr7D.!!$R1 636
10 TraesCS6A01G181500 chr5B 72089323 72089918 595 False 688.0 688 87.58200 59 663 1 chr5B.!!$F1 604
11 TraesCS6A01G181500 chr4B 660964236 660964776 540 True 560.0 560 85.79100 98 636 1 chr4B.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 355 0.250467 TGGAAGCAGACTGCCTTGTC 60.25 55.0 23.74 15.07 46.52 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 4733 0.037232 GTAGCCCAGTCACTGTCCAC 60.037 60.0 3.56 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.918293 TGCAGATCCGGTGAAGGGT 60.918 57.895 0.00 0.00 0.00 4.34
75 76 2.158711 CCATACCCACATCACATGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
108 109 0.790207 CCACAACTTCGATGGACACG 59.210 55.000 3.12 0.00 35.33 4.49
110 111 1.864711 CACAACTTCGATGGACACGTT 59.135 47.619 3.12 0.00 0.00 3.99
137 138 2.023673 CAGGCTGGACAAAACTCAACA 58.976 47.619 6.61 0.00 0.00 3.33
140 141 2.622942 GGCTGGACAAAACTCAACATCA 59.377 45.455 0.00 0.00 0.00 3.07
165 166 2.796383 GCTCGTTCTGTGCATCGACTAT 60.796 50.000 0.00 0.00 37.06 2.12
184 185 1.332144 TTACGGCTGGAGCGGGTATT 61.332 55.000 10.55 0.00 44.37 1.89
259 260 0.251916 CATGTGCGGAACCCCTAGAA 59.748 55.000 0.00 0.00 0.00 2.10
283 284 1.128692 GAACTGCTTGCGTGTATGGAC 59.871 52.381 0.00 0.00 0.00 4.02
299 300 3.553095 GACGGCCTGAACCTTGCCT 62.553 63.158 0.00 0.00 43.12 4.75
300 301 2.282462 CGGCCTGAACCTTGCCTT 60.282 61.111 0.00 0.00 43.12 4.35
301 302 1.002624 CGGCCTGAACCTTGCCTTA 60.003 57.895 0.00 0.00 43.12 2.69
302 303 0.394352 CGGCCTGAACCTTGCCTTAT 60.394 55.000 0.00 0.00 43.12 1.73
303 304 1.134220 CGGCCTGAACCTTGCCTTATA 60.134 52.381 0.00 0.00 43.12 0.98
304 305 2.298610 GGCCTGAACCTTGCCTTATAC 58.701 52.381 0.00 0.00 42.01 1.47
305 306 2.356741 GGCCTGAACCTTGCCTTATACA 60.357 50.000 0.00 0.00 42.01 2.29
306 307 3.352648 GCCTGAACCTTGCCTTATACAA 58.647 45.455 0.00 0.00 0.00 2.41
319 320 6.116806 TGCCTTATACAATTACAATGGACGT 58.883 36.000 0.00 0.00 0.00 4.34
340 341 5.032863 CGTAACAACCTATCGTAGTGGAAG 58.967 45.833 0.00 0.00 0.00 3.46
354 355 0.250467 TGGAAGCAGACTGCCTTGTC 60.250 55.000 23.74 15.07 46.52 3.18
360 361 0.528017 CAGACTGCCTTGTCGCTCTA 59.472 55.000 0.00 0.00 41.47 2.43
391 422 4.349636 TCATAGGAAGAGAGAGATCGGTCT 59.650 45.833 0.00 0.00 37.42 3.85
405 436 1.066430 TCGGTCTTGTTACTCCATGCC 60.066 52.381 0.00 0.00 0.00 4.40
421 454 3.355378 CATGCCTGTGGACCAGATTAAA 58.645 45.455 0.00 0.00 44.49 1.52
431 464 4.018506 TGGACCAGATTAAAAGGCTCATGA 60.019 41.667 0.00 0.00 0.00 3.07
432 465 4.578105 GGACCAGATTAAAAGGCTCATGAG 59.422 45.833 18.84 18.84 0.00 2.90
433 466 5.431765 GACCAGATTAAAAGGCTCATGAGA 58.568 41.667 27.04 3.52 0.00 3.27
434 467 5.435291 ACCAGATTAAAAGGCTCATGAGAG 58.565 41.667 27.04 1.76 44.96 3.20
435 468 5.190528 ACCAGATTAAAAGGCTCATGAGAGA 59.809 40.000 27.04 3.52 44.98 3.10
436 469 6.118170 CCAGATTAAAAGGCTCATGAGAGAA 58.882 40.000 27.04 9.83 44.98 2.87
437 470 6.260493 CCAGATTAAAAGGCTCATGAGAGAAG 59.740 42.308 27.04 0.09 44.98 2.85
471 2713 8.091449 GGAGATTAGTTAAGCTAGTGCATGTAT 58.909 37.037 0.00 0.00 42.74 2.29
567 2809 3.306364 GGGTTCAGGTCCAGATGATATCG 60.306 52.174 0.00 0.00 0.00 2.92
590 2846 6.320418 TCGCTGACCTATGTAAGAATGAACTA 59.680 38.462 0.00 0.00 0.00 2.24
707 2972 9.871238 ATGTCTTGTATGAGAAGTTATTACGTT 57.129 29.630 0.00 0.00 0.00 3.99
734 2999 1.338973 GTATTAGCGTCCGTCATCCCA 59.661 52.381 0.00 0.00 0.00 4.37
742 3007 0.830648 TCCGTCATCCCATTCCTGTC 59.169 55.000 0.00 0.00 0.00 3.51
751 3016 3.754965 TCCCATTCCTGTCACAGAAAAG 58.245 45.455 6.30 0.00 32.44 2.27
773 3039 3.429207 GGAAAATATTAGCGCCTCTCGTC 59.571 47.826 2.29 0.00 41.07 4.20
844 3110 4.573201 TGAAAACAGTTCGAAACGGAGATT 59.427 37.500 0.00 0.00 36.23 2.40
845 3111 5.754406 TGAAAACAGTTCGAAACGGAGATTA 59.246 36.000 0.00 0.00 36.23 1.75
847 3113 6.796705 AAACAGTTCGAAACGGAGATTATT 57.203 33.333 0.00 0.00 36.23 1.40
848 3114 7.894376 AAACAGTTCGAAACGGAGATTATTA 57.106 32.000 0.00 0.00 36.23 0.98
850 3116 8.488651 AACAGTTCGAAACGGAGATTATTATT 57.511 30.769 0.00 0.00 36.23 1.40
851 3117 8.488651 ACAGTTCGAAACGGAGATTATTATTT 57.511 30.769 0.00 0.00 36.23 1.40
852 3118 8.943002 ACAGTTCGAAACGGAGATTATTATTTT 58.057 29.630 0.00 0.00 36.23 1.82
853 3119 9.210426 CAGTTCGAAACGGAGATTATTATTTTG 57.790 33.333 0.00 0.00 36.23 2.44
854 3120 8.395633 AGTTCGAAACGGAGATTATTATTTTGG 58.604 33.333 0.00 0.00 36.23 3.28
855 3121 8.392612 GTTCGAAACGGAGATTATTATTTTGGA 58.607 33.333 0.00 0.00 0.00 3.53
856 3122 8.495361 TCGAAACGGAGATTATTATTTTGGAA 57.505 30.769 0.00 0.00 0.00 3.53
857 3123 8.948145 TCGAAACGGAGATTATTATTTTGGAAA 58.052 29.630 0.00 0.00 0.00 3.13
858 3124 9.006215 CGAAACGGAGATTATTATTTTGGAAAC 57.994 33.333 0.00 0.00 0.00 2.78
859 3125 9.849166 GAAACGGAGATTATTATTTTGGAAACA 57.151 29.630 0.00 0.00 39.83 2.83
860 3126 9.855021 AAACGGAGATTATTATTTTGGAAACAG 57.145 29.630 0.00 0.00 44.54 3.16
861 3127 8.575649 ACGGAGATTATTATTTTGGAAACAGT 57.424 30.769 0.00 0.00 44.54 3.55
862 3128 9.020731 ACGGAGATTATTATTTTGGAAACAGTT 57.979 29.630 0.00 0.00 44.54 3.16
863 3129 9.503427 CGGAGATTATTATTTTGGAAACAGTTC 57.497 33.333 0.00 0.00 44.54 3.01
864 3130 9.503427 GGAGATTATTATTTTGGAAACAGTTCG 57.497 33.333 0.00 0.00 44.54 3.95
869 3135 7.617533 ATTATTTTGGAAACAGTTCGAAACG 57.382 32.000 0.00 0.00 40.04 3.60
870 3136 3.408288 TTTGGAAACAGTTCGAAACGG 57.592 42.857 0.00 0.00 44.54 4.44
871 3137 2.312722 TGGAAACAGTTCGAAACGGA 57.687 45.000 0.00 0.00 34.28 4.69
872 3138 2.206750 TGGAAACAGTTCGAAACGGAG 58.793 47.619 0.00 0.00 34.28 4.63
873 3139 2.159071 TGGAAACAGTTCGAAACGGAGA 60.159 45.455 0.00 0.00 34.28 3.71
874 3140 3.064931 GGAAACAGTTCGAAACGGAGAT 58.935 45.455 0.00 0.00 34.28 2.75
875 3141 4.240096 GGAAACAGTTCGAAACGGAGATA 58.760 43.478 0.00 0.00 34.28 1.98
876 3142 4.868734 GGAAACAGTTCGAAACGGAGATAT 59.131 41.667 0.00 0.00 34.28 1.63
877 3143 5.350640 GGAAACAGTTCGAAACGGAGATATT 59.649 40.000 0.00 0.00 34.28 1.28
878 3144 6.128363 GGAAACAGTTCGAAACGGAGATATTT 60.128 38.462 0.00 0.00 34.28 1.40
879 3145 6.796705 AACAGTTCGAAACGGAGATATTTT 57.203 33.333 0.00 0.00 36.23 1.82
880 3146 6.796705 ACAGTTCGAAACGGAGATATTTTT 57.203 33.333 0.00 0.00 36.23 1.94
881 3147 7.894376 ACAGTTCGAAACGGAGATATTTTTA 57.106 32.000 0.00 0.00 36.23 1.52
925 3191 3.426615 AGGTGTTGTGTTGAGTCCAAAA 58.573 40.909 0.00 0.00 33.49 2.44
1021 3288 1.826054 CAAACCTGCACCGAACCCA 60.826 57.895 0.00 0.00 0.00 4.51
1114 3385 1.906824 ACGACCACGACCATGTCCT 60.907 57.895 0.00 0.00 42.66 3.85
1115 3386 1.153823 CGACCACGACCATGTCCTC 60.154 63.158 0.00 0.00 42.66 3.71
1116 3387 1.218316 GACCACGACCATGTCCTCC 59.782 63.158 0.00 0.00 0.00 4.30
1117 3388 1.229209 ACCACGACCATGTCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
1118 3389 1.258445 ACCACGACCATGTCCTCCTC 61.258 60.000 0.00 0.00 0.00 3.71
1119 3390 1.517832 CACGACCATGTCCTCCTCC 59.482 63.158 0.00 0.00 0.00 4.30
1282 3553 2.801631 CGTCCATGCCTCTCCTCCC 61.802 68.421 0.00 0.00 0.00 4.30
1305 3585 3.289211 TCCTCCCCAGGTAGGCCA 61.289 66.667 5.01 0.00 41.28 5.36
1333 3613 3.703286 TCTCGTGACGTTTCTTCTTCA 57.297 42.857 4.40 0.00 0.00 3.02
1369 3649 1.443828 GGGATCCTGACGGAGCTTC 59.556 63.158 12.58 0.00 45.12 3.86
1397 3677 1.289109 TTGGCGTAACAGAGAAGCGC 61.289 55.000 0.00 0.00 46.24 5.92
1974 4295 0.961753 CCTGGGTTCAGTTTGCTTCC 59.038 55.000 0.00 0.00 39.31 3.46
2008 4329 8.967918 AGTTGCATCTCAATTACAGTAGTAGTA 58.032 33.333 0.00 0.00 36.99 1.82
2009 4330 9.239002 GTTGCATCTCAATTACAGTAGTAGTAG 57.761 37.037 0.00 0.00 36.99 2.57
2077 4447 5.784578 AAAGGAACAGGTGGTTAATTGAC 57.215 39.130 0.00 0.00 40.63 3.18
2109 4479 2.419436 GGAAGGTTGTTGTTTTGGGTGG 60.419 50.000 0.00 0.00 0.00 4.61
2110 4480 2.239681 AGGTTGTTGTTTTGGGTGGA 57.760 45.000 0.00 0.00 0.00 4.02
2111 4481 2.107366 AGGTTGTTGTTTTGGGTGGAG 58.893 47.619 0.00 0.00 0.00 3.86
2112 4482 1.828595 GGTTGTTGTTTTGGGTGGAGT 59.171 47.619 0.00 0.00 0.00 3.85
2113 4483 2.235155 GGTTGTTGTTTTGGGTGGAGTT 59.765 45.455 0.00 0.00 0.00 3.01
2114 4484 3.517602 GTTGTTGTTTTGGGTGGAGTTC 58.482 45.455 0.00 0.00 0.00 3.01
2115 4485 3.094484 TGTTGTTTTGGGTGGAGTTCT 57.906 42.857 0.00 0.00 0.00 3.01
2116 4486 3.020984 TGTTGTTTTGGGTGGAGTTCTC 58.979 45.455 0.00 0.00 0.00 2.87
2117 4487 3.288092 GTTGTTTTGGGTGGAGTTCTCT 58.712 45.455 0.00 0.00 0.00 3.10
2118 4488 3.662759 TGTTTTGGGTGGAGTTCTCTT 57.337 42.857 0.00 0.00 0.00 2.85
2127 4497 1.248486 GGAGTTCTCTTTTGGGTGCC 58.752 55.000 0.00 0.00 0.00 5.01
2247 4631 0.788391 GTGTTAAACTCGGTCGCTGG 59.212 55.000 0.00 0.00 0.00 4.85
2290 4685 2.807045 CTGTCGTCAGGTGCGCTC 60.807 66.667 9.73 4.47 37.97 5.03
2291 4686 3.558099 CTGTCGTCAGGTGCGCTCA 62.558 63.158 9.73 0.00 37.97 4.26
2292 4687 2.125912 GTCGTCAGGTGCGCTCAT 60.126 61.111 9.73 0.00 0.00 2.90
2293 4688 2.125952 TCGTCAGGTGCGCTCATG 60.126 61.111 17.21 17.21 0.00 3.07
2294 4689 2.433145 CGTCAGGTGCGCTCATGT 60.433 61.111 21.55 0.00 0.00 3.21
2295 4690 2.029288 CGTCAGGTGCGCTCATGTT 61.029 57.895 21.55 0.00 0.00 2.71
2321 4717 8.500773 TGTAATTCATTTTCTCCTCGTACAAAC 58.499 33.333 0.00 0.00 0.00 2.93
2327 4723 0.389426 CTCCTCGTACAAACACCCCG 60.389 60.000 0.00 0.00 0.00 5.73
2328 4724 1.375013 CCTCGTACAAACACCCCGG 60.375 63.158 0.00 0.00 0.00 5.73
2329 4725 1.375013 CTCGTACAAACACCCCGGG 60.375 63.158 15.80 15.80 0.00 5.73
2330 4726 3.051479 CGTACAAACACCCCGGGC 61.051 66.667 17.73 0.00 0.00 6.13
2331 4727 2.113562 GTACAAACACCCCGGGCA 59.886 61.111 17.73 0.00 0.00 5.36
2332 4728 1.303806 GTACAAACACCCCGGGCAT 60.304 57.895 17.73 1.11 0.00 4.40
2333 4729 1.303724 TACAAACACCCCGGGCATG 60.304 57.895 17.73 18.43 0.00 4.06
2334 4730 2.070399 TACAAACACCCCGGGCATGT 62.070 55.000 17.73 19.18 0.00 3.21
2335 4731 2.282887 AAACACCCCGGGCATGTC 60.283 61.111 24.43 0.00 0.00 3.06
2336 4732 3.879180 AAACACCCCGGGCATGTCC 62.879 63.158 24.43 6.17 0.00 4.02
2350 4746 4.655527 GTCCGTGGACAGTGACTG 57.344 61.111 11.70 11.70 44.02 3.51
2351 4747 1.006102 GTCCGTGGACAGTGACTGG 60.006 63.158 17.92 0.00 44.02 4.00
2352 4748 2.207229 TCCGTGGACAGTGACTGGG 61.207 63.158 17.92 7.98 35.51 4.45
2353 4749 2.357517 CGTGGACAGTGACTGGGC 60.358 66.667 17.92 8.29 35.51 5.36
2354 4750 2.872388 CGTGGACAGTGACTGGGCT 61.872 63.158 17.92 0.00 35.51 5.19
2355 4751 1.532604 CGTGGACAGTGACTGGGCTA 61.533 60.000 17.92 3.63 35.51 3.93
2356 4752 0.037232 GTGGACAGTGACTGGGCTAC 60.037 60.000 17.92 12.25 35.51 3.58
2357 4753 0.471022 TGGACAGTGACTGGGCTACA 60.471 55.000 17.92 0.00 35.51 2.74
2358 4754 0.037232 GGACAGTGACTGGGCTACAC 60.037 60.000 17.92 0.00 35.51 2.90
2359 4755 0.679505 GACAGTGACTGGGCTACACA 59.320 55.000 17.92 0.00 35.51 3.72
2360 4756 0.393077 ACAGTGACTGGGCTACACAC 59.607 55.000 17.92 0.00 35.51 3.82
2361 4757 0.392706 CAGTGACTGGGCTACACACA 59.607 55.000 4.28 0.00 37.05 3.72
2362 4758 1.128200 AGTGACTGGGCTACACACAA 58.872 50.000 0.00 0.00 37.05 3.33
2363 4759 1.488812 AGTGACTGGGCTACACACAAA 59.511 47.619 0.00 0.00 37.05 2.83
2364 4760 2.092646 AGTGACTGGGCTACACACAAAA 60.093 45.455 0.00 0.00 37.05 2.44
2365 4761 2.685897 GTGACTGGGCTACACACAAAAA 59.314 45.455 0.00 0.00 35.06 1.94
2366 4762 2.685897 TGACTGGGCTACACACAAAAAC 59.314 45.455 0.00 0.00 0.00 2.43
2367 4763 2.028876 ACTGGGCTACACACAAAAACC 58.971 47.619 0.00 0.00 0.00 3.27
2368 4764 2.028130 CTGGGCTACACACAAAAACCA 58.972 47.619 0.00 0.00 0.00 3.67
2369 4765 2.627699 CTGGGCTACACACAAAAACCAT 59.372 45.455 0.00 0.00 0.00 3.55
2370 4766 2.625790 TGGGCTACACACAAAAACCATC 59.374 45.455 0.00 0.00 0.00 3.51
2371 4767 2.890945 GGGCTACACACAAAAACCATCT 59.109 45.455 0.00 0.00 0.00 2.90
2372 4768 3.305335 GGGCTACACACAAAAACCATCTG 60.305 47.826 0.00 0.00 0.00 2.90
2373 4769 3.305335 GGCTACACACAAAAACCATCTGG 60.305 47.826 0.00 0.00 42.17 3.86
2388 4784 4.785301 CCATCTGGTACATTCATGAACCT 58.215 43.478 11.07 0.91 38.20 3.50
2389 4785 4.818546 CCATCTGGTACATTCATGAACCTC 59.181 45.833 11.07 2.03 38.20 3.85
2390 4786 5.430886 CATCTGGTACATTCATGAACCTCA 58.569 41.667 11.07 4.69 38.20 3.86
2391 4787 5.497464 TCTGGTACATTCATGAACCTCAA 57.503 39.130 11.07 0.00 38.20 3.02
2392 4788 5.875224 TCTGGTACATTCATGAACCTCAAA 58.125 37.500 11.07 0.00 38.20 2.69
2393 4789 5.705441 TCTGGTACATTCATGAACCTCAAAC 59.295 40.000 11.07 3.77 38.20 2.93
2394 4790 5.380900 TGGTACATTCATGAACCTCAAACA 58.619 37.500 11.07 1.16 0.00 2.83
2395 4791 6.009589 TGGTACATTCATGAACCTCAAACAT 58.990 36.000 11.07 0.00 0.00 2.71
2396 4792 6.150976 TGGTACATTCATGAACCTCAAACATC 59.849 38.462 11.07 0.00 0.00 3.06
2397 4793 6.150976 GGTACATTCATGAACCTCAAACATCA 59.849 38.462 11.07 0.00 0.00 3.07
2398 4794 6.845758 ACATTCATGAACCTCAAACATCAT 57.154 33.333 11.07 0.00 32.94 2.45
2399 4795 7.943079 ACATTCATGAACCTCAAACATCATA 57.057 32.000 11.07 0.00 31.59 2.15
2400 4796 7.765307 ACATTCATGAACCTCAAACATCATAC 58.235 34.615 11.07 0.00 31.59 2.39
2401 4797 6.757897 TTCATGAACCTCAAACATCATACC 57.242 37.500 3.38 0.00 31.59 2.73
2402 4798 6.065976 TCATGAACCTCAAACATCATACCT 57.934 37.500 0.00 0.00 31.59 3.08
2403 4799 6.115446 TCATGAACCTCAAACATCATACCTC 58.885 40.000 0.00 0.00 31.59 3.85
2404 4800 5.497464 TGAACCTCAAACATCATACCTCA 57.503 39.130 0.00 0.00 0.00 3.86
2405 4801 5.875224 TGAACCTCAAACATCATACCTCAA 58.125 37.500 0.00 0.00 0.00 3.02
2406 4802 6.303054 TGAACCTCAAACATCATACCTCAAA 58.697 36.000 0.00 0.00 0.00 2.69
2407 4803 6.947733 TGAACCTCAAACATCATACCTCAAAT 59.052 34.615 0.00 0.00 0.00 2.32
2408 4804 7.121168 TGAACCTCAAACATCATACCTCAAATC 59.879 37.037 0.00 0.00 0.00 2.17
2409 4805 5.888161 ACCTCAAACATCATACCTCAAATCC 59.112 40.000 0.00 0.00 0.00 3.01
2410 4806 5.887598 CCTCAAACATCATACCTCAAATCCA 59.112 40.000 0.00 0.00 0.00 3.41
2411 4807 6.548622 CCTCAAACATCATACCTCAAATCCAT 59.451 38.462 0.00 0.00 0.00 3.41
2412 4808 7.720957 CCTCAAACATCATACCTCAAATCCATA 59.279 37.037 0.00 0.00 0.00 2.74
2413 4809 8.681486 TCAAACATCATACCTCAAATCCATAG 57.319 34.615 0.00 0.00 0.00 2.23
2414 4810 8.274322 TCAAACATCATACCTCAAATCCATAGT 58.726 33.333 0.00 0.00 0.00 2.12
2415 4811 8.347771 CAAACATCATACCTCAAATCCATAGTG 58.652 37.037 0.00 0.00 0.00 2.74
2416 4812 6.537355 ACATCATACCTCAAATCCATAGTGG 58.463 40.000 0.00 0.00 39.43 4.00
2417 4813 6.101734 ACATCATACCTCAAATCCATAGTGGT 59.898 38.462 0.00 0.00 39.03 4.16
2418 4814 6.575244 TCATACCTCAAATCCATAGTGGTT 57.425 37.500 0.00 0.00 39.03 3.67
2419 4815 7.684317 TCATACCTCAAATCCATAGTGGTTA 57.316 36.000 0.00 0.00 39.03 2.85
2420 4816 8.275187 TCATACCTCAAATCCATAGTGGTTAT 57.725 34.615 0.00 0.00 39.03 1.89
2421 4817 8.156820 TCATACCTCAAATCCATAGTGGTTATG 58.843 37.037 0.00 0.00 39.03 1.90
2422 4818 5.133221 ACCTCAAATCCATAGTGGTTATGC 58.867 41.667 0.00 0.00 39.03 3.14
2423 4819 5.132502 CCTCAAATCCATAGTGGTTATGCA 58.867 41.667 0.00 0.00 39.03 3.96
2424 4820 5.009010 CCTCAAATCCATAGTGGTTATGCAC 59.991 44.000 0.00 0.00 39.03 4.57
2425 4821 5.504853 TCAAATCCATAGTGGTTATGCACA 58.495 37.500 0.00 0.00 39.03 4.57
2426 4822 6.128486 TCAAATCCATAGTGGTTATGCACAT 58.872 36.000 0.00 0.00 39.03 3.21
2427 4823 6.606796 TCAAATCCATAGTGGTTATGCACATT 59.393 34.615 0.00 0.00 39.03 2.71
2428 4824 6.395426 AATCCATAGTGGTTATGCACATTG 57.605 37.500 0.00 0.00 39.03 2.82
2429 4825 5.109500 TCCATAGTGGTTATGCACATTGA 57.891 39.130 0.00 0.00 39.03 2.57
2430 4826 5.504853 TCCATAGTGGTTATGCACATTGAA 58.495 37.500 0.00 0.00 39.03 2.69
2431 4827 5.948758 TCCATAGTGGTTATGCACATTGAAA 59.051 36.000 0.00 0.00 39.03 2.69
2432 4828 6.435591 TCCATAGTGGTTATGCACATTGAAAA 59.564 34.615 0.00 0.00 39.03 2.29
2433 4829 6.531240 CCATAGTGGTTATGCACATTGAAAAC 59.469 38.462 0.00 0.00 38.26 2.43
2434 4830 4.881920 AGTGGTTATGCACATTGAAAACC 58.118 39.130 0.00 6.22 37.48 3.27
2435 4831 4.588528 AGTGGTTATGCACATTGAAAACCT 59.411 37.500 12.12 0.00 37.76 3.50
2436 4832 5.772672 AGTGGTTATGCACATTGAAAACCTA 59.227 36.000 12.12 0.57 37.76 3.08
2437 4833 5.861787 GTGGTTATGCACATTGAAAACCTAC 59.138 40.000 12.12 7.00 37.76 3.18
2438 4834 5.092781 GGTTATGCACATTGAAAACCTACG 58.907 41.667 0.00 0.00 34.79 3.51
2439 4835 5.335348 GGTTATGCACATTGAAAACCTACGT 60.335 40.000 0.00 0.00 34.79 3.57
2440 4836 6.128227 GGTTATGCACATTGAAAACCTACGTA 60.128 38.462 0.00 0.00 34.79 3.57
2441 4837 4.735662 TGCACATTGAAAACCTACGTAC 57.264 40.909 0.00 0.00 0.00 3.67
2442 4838 4.382291 TGCACATTGAAAACCTACGTACT 58.618 39.130 0.00 0.00 0.00 2.73
2443 4839 5.539979 TGCACATTGAAAACCTACGTACTA 58.460 37.500 0.00 0.00 0.00 1.82
2444 4840 5.406175 TGCACATTGAAAACCTACGTACTAC 59.594 40.000 0.00 0.00 0.00 2.73
2458 4854 4.935885 CGTACTACGTACTCCTTCTGTT 57.064 45.455 0.09 0.00 36.93 3.16
2459 4855 5.288543 CGTACTACGTACTCCTTCTGTTT 57.711 43.478 0.09 0.00 36.93 2.83
2460 4856 5.319931 CGTACTACGTACTCCTTCTGTTTC 58.680 45.833 0.09 0.00 36.93 2.78
2461 4857 5.121454 CGTACTACGTACTCCTTCTGTTTCT 59.879 44.000 0.09 0.00 36.93 2.52
2462 4858 6.348050 CGTACTACGTACTCCTTCTGTTTCTT 60.348 42.308 0.09 0.00 36.93 2.52
2463 4859 6.402456 ACTACGTACTCCTTCTGTTTCTTT 57.598 37.500 0.00 0.00 0.00 2.52
2464 4860 6.814043 ACTACGTACTCCTTCTGTTTCTTTT 58.186 36.000 0.00 0.00 0.00 2.27
2465 4861 7.270779 ACTACGTACTCCTTCTGTTTCTTTTT 58.729 34.615 0.00 0.00 0.00 1.94
2466 4862 8.416329 ACTACGTACTCCTTCTGTTTCTTTTTA 58.584 33.333 0.00 0.00 0.00 1.52
2467 4863 7.474398 ACGTACTCCTTCTGTTTCTTTTTAC 57.526 36.000 0.00 0.00 0.00 2.01
2468 4864 7.270779 ACGTACTCCTTCTGTTTCTTTTTACT 58.729 34.615 0.00 0.00 0.00 2.24
2469 4865 7.767659 ACGTACTCCTTCTGTTTCTTTTTACTT 59.232 33.333 0.00 0.00 0.00 2.24
2470 4866 8.610035 CGTACTCCTTCTGTTTCTTTTTACTTT 58.390 33.333 0.00 0.00 0.00 2.66
2471 4867 9.717892 GTACTCCTTCTGTTTCTTTTTACTTTG 57.282 33.333 0.00 0.00 0.00 2.77
2472 4868 7.258441 ACTCCTTCTGTTTCTTTTTACTTTGC 58.742 34.615 0.00 0.00 0.00 3.68
2473 4869 7.093945 ACTCCTTCTGTTTCTTTTTACTTTGCA 60.094 33.333 0.00 0.00 0.00 4.08
2474 4870 7.781056 TCCTTCTGTTTCTTTTTACTTTGCAT 58.219 30.769 0.00 0.00 0.00 3.96
2475 4871 7.706179 TCCTTCTGTTTCTTTTTACTTTGCATG 59.294 33.333 0.00 0.00 0.00 4.06
2476 4872 7.492344 CCTTCTGTTTCTTTTTACTTTGCATGT 59.508 33.333 0.00 0.00 0.00 3.21
2477 4873 9.515020 CTTCTGTTTCTTTTTACTTTGCATGTA 57.485 29.630 0.00 0.00 0.00 2.29
2478 4874 9.862371 TTCTGTTTCTTTTTACTTTGCATGTAA 57.138 25.926 8.24 8.24 0.00 2.41
2479 4875 9.515020 TCTGTTTCTTTTTACTTTGCATGTAAG 57.485 29.630 11.07 2.53 32.43 2.34
2480 4876 9.515020 CTGTTTCTTTTTACTTTGCATGTAAGA 57.485 29.630 14.19 2.21 32.43 2.10
2529 4925 7.196637 ACTTTGACTAAGTTTATAGAGGGGG 57.803 40.000 0.00 0.00 44.73 5.40
2530 4926 5.625568 TTGACTAAGTTTATAGAGGGGGC 57.374 43.478 0.00 0.00 0.00 5.80
2531 4927 4.627015 TGACTAAGTTTATAGAGGGGGCA 58.373 43.478 0.00 0.00 0.00 5.36
2532 4928 4.407945 TGACTAAGTTTATAGAGGGGGCAC 59.592 45.833 0.00 0.00 0.00 5.01
2533 4929 3.387050 ACTAAGTTTATAGAGGGGGCACG 59.613 47.826 0.00 0.00 0.00 5.34
2534 4930 0.468648 AGTTTATAGAGGGGGCACGC 59.531 55.000 0.00 0.00 42.17 5.34
2549 4945 2.432456 CGCCAGACGCACAGCTTA 60.432 61.111 0.00 0.00 37.30 3.09
2550 4946 2.730672 CGCCAGACGCACAGCTTAC 61.731 63.158 0.00 0.00 37.30 2.34
2551 4947 2.730672 GCCAGACGCACAGCTTACG 61.731 63.158 0.00 0.00 37.47 3.18
2552 4948 2.094659 CCAGACGCACAGCTTACGG 61.095 63.158 4.96 0.00 0.00 4.02
2553 4949 1.372997 CAGACGCACAGCTTACGGT 60.373 57.895 4.96 0.00 0.00 4.83
2554 4950 1.080705 AGACGCACAGCTTACGGTC 60.081 57.895 4.96 1.47 0.00 4.79
2555 4951 1.080705 GACGCACAGCTTACGGTCT 60.081 57.895 4.96 0.00 0.00 3.85
2556 4952 1.071567 GACGCACAGCTTACGGTCTC 61.072 60.000 4.96 0.00 0.00 3.36
2557 4953 2.152699 CGCACAGCTTACGGTCTCG 61.153 63.158 0.00 0.00 43.02 4.04
2558 4954 1.805945 GCACAGCTTACGGTCTCGG 60.806 63.158 0.00 0.00 41.39 4.63
2559 4955 1.805945 CACAGCTTACGGTCTCGGC 60.806 63.158 0.00 0.00 41.39 5.54
2560 4956 2.579787 CAGCTTACGGTCTCGGCG 60.580 66.667 0.00 0.00 41.39 6.46
2561 4957 3.060615 AGCTTACGGTCTCGGCGT 61.061 61.111 6.85 0.00 41.39 5.68
2562 4958 2.578981 GCTTACGGTCTCGGCGTC 60.579 66.667 6.85 0.00 41.39 5.19
2563 4959 3.048941 GCTTACGGTCTCGGCGTCT 62.049 63.158 6.85 0.00 41.39 4.18
2564 4960 1.062206 CTTACGGTCTCGGCGTCTC 59.938 63.158 6.85 0.00 41.39 3.36
2565 4961 2.320339 CTTACGGTCTCGGCGTCTCC 62.320 65.000 6.85 6.85 41.39 3.71
2586 4982 4.335647 CCCTGCGCCTGTGAACCT 62.336 66.667 4.18 0.00 0.00 3.50
2587 4983 2.281761 CCTGCGCCTGTGAACCTT 60.282 61.111 4.18 0.00 0.00 3.50
2588 4984 2.620112 CCTGCGCCTGTGAACCTTG 61.620 63.158 4.18 0.00 0.00 3.61
2589 4985 2.594303 TGCGCCTGTGAACCTTGG 60.594 61.111 4.18 0.00 0.00 3.61
2590 4986 4.043200 GCGCCTGTGAACCTTGGC 62.043 66.667 0.00 0.00 41.76 4.52
2591 4987 2.594303 CGCCTGTGAACCTTGGCA 60.594 61.111 0.00 0.00 45.13 4.92
2592 4988 2.620112 CGCCTGTGAACCTTGGCAG 61.620 63.158 0.00 0.00 45.13 4.85
2607 5003 3.036431 GCAGGTTTACCAAGCCACT 57.964 52.632 1.13 0.00 38.89 4.00
2608 5004 0.598065 GCAGGTTTACCAAGCCACTG 59.402 55.000 1.13 0.00 38.89 3.66
2609 5005 1.981256 CAGGTTTACCAAGCCACTGT 58.019 50.000 1.13 0.00 38.89 3.55
2610 5006 2.306847 CAGGTTTACCAAGCCACTGTT 58.693 47.619 1.13 0.00 38.89 3.16
2611 5007 2.293399 CAGGTTTACCAAGCCACTGTTC 59.707 50.000 1.13 0.00 38.89 3.18
2612 5008 1.611977 GGTTTACCAAGCCACTGTTCC 59.388 52.381 0.00 0.00 35.64 3.62
2613 5009 2.583143 GTTTACCAAGCCACTGTTCCT 58.417 47.619 0.00 0.00 0.00 3.36
2614 5010 2.270352 TTACCAAGCCACTGTTCCTG 57.730 50.000 0.00 0.00 0.00 3.86
2615 5011 1.136828 TACCAAGCCACTGTTCCTGT 58.863 50.000 0.00 0.00 0.00 4.00
2616 5012 0.179018 ACCAAGCCACTGTTCCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
2617 5013 0.109342 CCAAGCCACTGTTCCTGTCT 59.891 55.000 0.00 0.00 0.00 3.41
2618 5014 1.233019 CAAGCCACTGTTCCTGTCTG 58.767 55.000 0.00 0.00 0.00 3.51
2619 5015 0.536006 AAGCCACTGTTCCTGTCTGC 60.536 55.000 0.00 0.00 0.00 4.26
2620 5016 2.320587 GCCACTGTTCCTGTCTGCG 61.321 63.158 0.00 0.00 0.00 5.18
2621 5017 2.320587 CCACTGTTCCTGTCTGCGC 61.321 63.158 0.00 0.00 0.00 6.09
2622 5018 2.031163 ACTGTTCCTGTCTGCGCC 59.969 61.111 4.18 0.00 0.00 6.53
2623 5019 2.345244 CTGTTCCTGTCTGCGCCT 59.655 61.111 4.18 0.00 0.00 5.52
2624 5020 2.031012 TGTTCCTGTCTGCGCCTG 59.969 61.111 4.18 0.00 0.00 4.85
2625 5021 2.343758 GTTCCTGTCTGCGCCTGA 59.656 61.111 4.18 0.00 0.00 3.86
2626 5022 1.739562 GTTCCTGTCTGCGCCTGAG 60.740 63.158 4.18 0.00 0.00 3.35
2627 5023 3.596066 TTCCTGTCTGCGCCTGAGC 62.596 63.158 4.18 0.00 37.71 4.26
2628 5024 4.383861 CCTGTCTGCGCCTGAGCA 62.384 66.667 4.18 4.10 45.96 4.26
2629 5025 3.117171 CTGTCTGCGCCTGAGCAC 61.117 66.667 4.18 0.00 42.92 4.40
2630 5026 4.687215 TGTCTGCGCCTGAGCACC 62.687 66.667 4.18 0.00 42.92 5.01
2711 5107 3.787001 CCACCCTTCCCGCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
2712 5108 2.685380 CACCCTTCCCGCTCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
2713 5109 2.122954 ACCCTTCCCGCTCCTCTT 59.877 61.111 0.00 0.00 0.00 2.85
2714 5110 1.990614 ACCCTTCCCGCTCCTCTTC 60.991 63.158 0.00 0.00 0.00 2.87
2715 5111 2.496817 CCTTCCCGCTCCTCTTCG 59.503 66.667 0.00 0.00 0.00 3.79
2716 5112 2.202810 CTTCCCGCTCCTCTTCGC 60.203 66.667 0.00 0.00 0.00 4.70
2717 5113 3.724914 CTTCCCGCTCCTCTTCGCC 62.725 68.421 0.00 0.00 0.00 5.54
2719 5115 3.854669 CCCGCTCCTCTTCGCCAT 61.855 66.667 0.00 0.00 0.00 4.40
2720 5116 2.587194 CCGCTCCTCTTCGCCATG 60.587 66.667 0.00 0.00 0.00 3.66
2721 5117 2.587194 CGCTCCTCTTCGCCATGG 60.587 66.667 7.63 7.63 0.00 3.66
2722 5118 2.903357 GCTCCTCTTCGCCATGGA 59.097 61.111 18.40 0.00 0.00 3.41
2723 5119 1.522580 GCTCCTCTTCGCCATGGAC 60.523 63.158 18.40 5.97 0.00 4.02
2724 5120 1.227089 CTCCTCTTCGCCATGGACG 60.227 63.158 18.40 18.60 0.00 4.79
2725 5121 2.892425 CCTCTTCGCCATGGACGC 60.892 66.667 18.40 0.00 0.00 5.19
2726 5122 2.892425 CTCTTCGCCATGGACGCC 60.892 66.667 18.40 0.00 0.00 5.68
2727 5123 3.664025 CTCTTCGCCATGGACGCCA 62.664 63.158 18.40 7.86 38.19 5.69
2728 5124 3.197790 CTTCGCCATGGACGCCAG 61.198 66.667 18.40 13.25 36.75 4.85
2742 5138 4.320456 CCAGCCCGCACTCACACT 62.320 66.667 0.00 0.00 0.00 3.55
2743 5139 2.740055 CAGCCCGCACTCACACTC 60.740 66.667 0.00 0.00 0.00 3.51
2744 5140 4.008933 AGCCCGCACTCACACTCC 62.009 66.667 0.00 0.00 0.00 3.85
2749 5145 3.106407 GCACTCACACTCCGCGAC 61.106 66.667 8.23 0.00 0.00 5.19
2750 5146 2.430921 CACTCACACTCCGCGACC 60.431 66.667 8.23 0.00 0.00 4.79
2751 5147 2.597805 ACTCACACTCCGCGACCT 60.598 61.111 8.23 0.00 0.00 3.85
2752 5148 2.179517 CTCACACTCCGCGACCTC 59.820 66.667 8.23 0.00 0.00 3.85
2753 5149 3.669036 CTCACACTCCGCGACCTCG 62.669 68.421 8.23 0.00 43.27 4.63
2782 5178 4.414732 GGAACGCCCTGTCGTATC 57.585 61.111 0.00 0.00 42.46 2.24
2783 5179 1.814527 GGAACGCCCTGTCGTATCT 59.185 57.895 0.00 0.00 42.46 1.98
2784 5180 0.527817 GGAACGCCCTGTCGTATCTG 60.528 60.000 0.00 0.00 42.46 2.90
2785 5181 0.527817 GAACGCCCTGTCGTATCTGG 60.528 60.000 0.00 0.00 42.46 3.86
2786 5182 2.279517 CGCCCTGTCGTATCTGGC 60.280 66.667 0.00 0.00 38.74 4.85
2787 5183 2.109181 GCCCTGTCGTATCTGGCC 59.891 66.667 0.00 0.00 36.07 5.36
2788 5184 2.435693 GCCCTGTCGTATCTGGCCT 61.436 63.158 3.32 0.00 36.07 5.19
2789 5185 1.972660 GCCCTGTCGTATCTGGCCTT 61.973 60.000 3.32 0.00 36.07 4.35
2790 5186 0.179073 CCCTGTCGTATCTGGCCTTG 60.179 60.000 3.32 0.00 0.00 3.61
2791 5187 0.179073 CCTGTCGTATCTGGCCTTGG 60.179 60.000 3.32 0.00 0.00 3.61
2792 5188 0.537188 CTGTCGTATCTGGCCTTGGT 59.463 55.000 3.32 0.00 0.00 3.67
2793 5189 0.535335 TGTCGTATCTGGCCTTGGTC 59.465 55.000 3.32 0.00 0.00 4.02
2794 5190 0.824759 GTCGTATCTGGCCTTGGTCT 59.175 55.000 3.32 0.00 0.00 3.85
2795 5191 0.824109 TCGTATCTGGCCTTGGTCTG 59.176 55.000 3.32 0.00 0.00 3.51
2796 5192 0.537188 CGTATCTGGCCTTGGTCTGT 59.463 55.000 3.32 0.00 0.00 3.41
2797 5193 1.471676 CGTATCTGGCCTTGGTCTGTC 60.472 57.143 3.32 0.00 0.00 3.51
2798 5194 0.824109 TATCTGGCCTTGGTCTGTCG 59.176 55.000 3.32 0.00 0.00 4.35
2799 5195 1.194781 ATCTGGCCTTGGTCTGTCGT 61.195 55.000 3.32 0.00 0.00 4.34
2800 5196 1.374758 CTGGCCTTGGTCTGTCGTC 60.375 63.158 3.32 0.00 0.00 4.20
2801 5197 2.047179 GGCCTTGGTCTGTCGTCC 60.047 66.667 0.00 0.00 0.00 4.79
2802 5198 2.584391 GGCCTTGGTCTGTCGTCCT 61.584 63.158 0.00 0.00 0.00 3.85
2803 5199 1.374758 GCCTTGGTCTGTCGTCCTG 60.375 63.158 0.00 0.00 0.00 3.86
2804 5200 1.374758 CCTTGGTCTGTCGTCCTGC 60.375 63.158 0.00 0.00 0.00 4.85
2805 5201 1.668294 CTTGGTCTGTCGTCCTGCT 59.332 57.895 0.00 0.00 0.00 4.24
2806 5202 0.389166 CTTGGTCTGTCGTCCTGCTC 60.389 60.000 0.00 0.00 0.00 4.26
2807 5203 2.142357 TTGGTCTGTCGTCCTGCTCG 62.142 60.000 0.00 0.00 0.00 5.03
2808 5204 2.179517 GTCTGTCGTCCTGCTCGG 59.820 66.667 0.00 0.00 0.00 4.63
2809 5205 3.749064 TCTGTCGTCCTGCTCGGC 61.749 66.667 0.00 0.00 0.00 5.54
2841 5237 4.748798 CAGAGGGGGTGGAGGCCT 62.749 72.222 3.86 3.86 0.00 5.19
2842 5238 4.423209 AGAGGGGGTGGAGGCCTC 62.423 72.222 25.59 25.59 0.00 4.70
2847 5243 4.083862 GGGTGGAGGCCTCGTCAC 62.084 72.222 25.81 25.81 0.00 3.67
2848 5244 4.436998 GGTGGAGGCCTCGTCACG 62.437 72.222 26.33 0.00 0.00 4.35
2849 5245 4.436998 GTGGAGGCCTCGTCACGG 62.437 72.222 26.36 0.00 0.00 4.94
2867 5263 4.154347 CCTCGGGCTGCTGAGGTC 62.154 72.222 24.12 0.00 45.48 3.85
2868 5264 4.504916 CTCGGGCTGCTGAGGTCG 62.505 72.222 12.56 3.23 0.00 4.79
2870 5266 4.504916 CGGGCTGCTGAGGTCGAG 62.505 72.222 0.00 0.00 0.00 4.04
2871 5267 4.154347 GGGCTGCTGAGGTCGAGG 62.154 72.222 0.00 0.00 0.00 4.63
2872 5268 4.154347 GGCTGCTGAGGTCGAGGG 62.154 72.222 0.00 0.00 0.00 4.30
2873 5269 4.828925 GCTGCTGAGGTCGAGGGC 62.829 72.222 0.00 0.00 0.00 5.19
2874 5270 4.154347 CTGCTGAGGTCGAGGGCC 62.154 72.222 0.00 0.00 0.00 5.80
2875 5271 4.704103 TGCTGAGGTCGAGGGCCT 62.704 66.667 5.25 5.25 39.42 5.19
2876 5272 4.154347 GCTGAGGTCGAGGGCCTG 62.154 72.222 12.95 3.26 36.29 4.85
2877 5273 4.154347 CTGAGGTCGAGGGCCTGC 62.154 72.222 12.95 1.12 36.29 4.85
2879 5275 4.154347 GAGGTCGAGGGCCTGCAG 62.154 72.222 12.95 6.78 36.29 4.41
2894 5290 4.641645 CAGCTGGTGCCGTGGGAA 62.642 66.667 5.57 0.00 40.80 3.97
2895 5291 4.643387 AGCTGGTGCCGTGGGAAC 62.643 66.667 0.00 0.00 40.80 3.62
2922 5318 4.335647 CCTCTGGGCGTGCCAAGT 62.336 66.667 14.83 0.00 38.31 3.16
2923 5319 3.052082 CTCTGGGCGTGCCAAGTG 61.052 66.667 14.83 8.95 38.31 3.16
2924 5320 4.641645 TCTGGGCGTGCCAAGTGG 62.642 66.667 14.83 0.00 38.31 4.00
2925 5321 4.641645 CTGGGCGTGCCAAGTGGA 62.642 66.667 13.76 0.00 37.98 4.02
2926 5322 4.641645 TGGGCGTGCCAAGTGGAG 62.642 66.667 13.76 0.00 37.98 3.86
2979 5375 4.821589 CTCAGCCGCGGTCTTCCC 62.822 72.222 28.70 8.76 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.460987 CCTTCACCGGATCTGCACTC 60.461 60.000 9.46 0.00 0.00 3.51
16 17 1.202891 ACCACTTGCTTACCCTTCACC 60.203 52.381 0.00 0.00 0.00 4.02
25 26 1.073763 ACTGCATCCACCACTTGCTTA 59.926 47.619 0.00 0.00 37.28 3.09
75 76 3.225798 GTGGCCCAGCTGCAACAA 61.226 61.111 8.66 0.00 35.16 2.83
165 166 1.332144 AATACCCGCTCCAGCCGTAA 61.332 55.000 0.00 0.00 37.91 3.18
184 185 1.334689 CCGTCACTATCGCGCAGAATA 60.335 52.381 8.75 0.80 0.00 1.75
201 202 2.490115 GAGGAGAATATGATCTCGCCGT 59.510 50.000 0.00 0.00 45.54 5.68
300 301 8.881743 GGTTGTTACGTCCATTGTAATTGTATA 58.118 33.333 0.00 0.00 34.59 1.47
301 302 7.608761 AGGTTGTTACGTCCATTGTAATTGTAT 59.391 33.333 0.00 0.00 34.59 2.29
302 303 6.935771 AGGTTGTTACGTCCATTGTAATTGTA 59.064 34.615 0.00 0.00 34.59 2.41
303 304 5.766174 AGGTTGTTACGTCCATTGTAATTGT 59.234 36.000 0.00 0.00 34.59 2.71
304 305 6.249035 AGGTTGTTACGTCCATTGTAATTG 57.751 37.500 0.00 0.00 34.59 2.32
305 306 7.010738 CGATAGGTTGTTACGTCCATTGTAATT 59.989 37.037 0.00 0.00 34.59 1.40
306 307 6.477688 CGATAGGTTGTTACGTCCATTGTAAT 59.522 38.462 0.00 0.00 34.59 1.89
319 320 4.463539 TGCTTCCACTACGATAGGTTGTTA 59.536 41.667 0.00 0.00 43.77 2.41
340 341 2.358003 AGCGACAAGGCAGTCTGC 60.358 61.111 16.93 16.93 44.08 4.26
354 355 6.450545 TCTTCCTATGATCATGTTTAGAGCG 58.549 40.000 18.72 1.65 0.00 5.03
360 361 7.911130 TCTCTCTCTTCCTATGATCATGTTT 57.089 36.000 18.72 0.00 0.00 2.83
391 422 1.702401 TCCACAGGCATGGAGTAACAA 59.298 47.619 2.31 0.00 44.14 2.83
421 454 2.117865 CTCCCTTCTCTCATGAGCCTT 58.882 52.381 18.36 0.00 40.03 4.35
431 464 3.793842 AATCTCCCTTCTCCCTTCTCT 57.206 47.619 0.00 0.00 0.00 3.10
432 465 4.552674 ACTAATCTCCCTTCTCCCTTCTC 58.447 47.826 0.00 0.00 0.00 2.87
433 466 4.635558 ACTAATCTCCCTTCTCCCTTCT 57.364 45.455 0.00 0.00 0.00 2.85
434 467 6.686885 GCTTAACTAATCTCCCTTCTCCCTTC 60.687 46.154 0.00 0.00 0.00 3.46
435 468 5.131308 GCTTAACTAATCTCCCTTCTCCCTT 59.869 44.000 0.00 0.00 0.00 3.95
436 469 4.656575 GCTTAACTAATCTCCCTTCTCCCT 59.343 45.833 0.00 0.00 0.00 4.20
437 470 4.656575 AGCTTAACTAATCTCCCTTCTCCC 59.343 45.833 0.00 0.00 0.00 4.30
471 2713 4.741837 GCTTATGCCATTCTGCTCTCTACA 60.742 45.833 0.00 0.00 0.00 2.74
559 2801 7.468141 TTCTTACATAGGTCAGCGATATCAT 57.532 36.000 3.12 0.00 0.00 2.45
567 2809 6.422400 GCTAGTTCATTCTTACATAGGTCAGC 59.578 42.308 0.00 0.00 0.00 4.26
590 2846 9.567702 AGGGATTATTATTATTACTCAGGAGCT 57.432 33.333 0.00 0.00 0.00 4.09
670 2932 5.984725 TCATACAAGACATAACGTGGGATT 58.015 37.500 0.00 0.00 0.00 3.01
707 2972 3.439825 TGACGGACGCTAATACAAGTACA 59.560 43.478 0.00 0.00 0.00 2.90
713 2978 1.338973 GGGATGACGGACGCTAATACA 59.661 52.381 0.00 0.00 0.00 2.29
719 2984 1.144057 GAATGGGATGACGGACGCT 59.856 57.895 0.00 0.00 0.00 5.07
720 2985 1.887707 GGAATGGGATGACGGACGC 60.888 63.158 0.00 0.00 0.00 5.19
721 2986 0.530650 CAGGAATGGGATGACGGACG 60.531 60.000 0.00 0.00 0.00 4.79
734 2999 6.983906 ATTTTCCTTTTCTGTGACAGGAAT 57.016 33.333 13.33 0.00 43.47 3.01
742 3007 5.743872 GGCGCTAATATTTTCCTTTTCTGTG 59.256 40.000 7.64 0.00 0.00 3.66
751 3016 3.391049 ACGAGAGGCGCTAATATTTTCC 58.609 45.455 7.64 0.00 46.04 3.13
773 3039 0.390340 CGGGGTATGATCCGCTCATG 60.390 60.000 8.49 0.00 44.48 3.07
844 3110 7.804129 CCGTTTCGAACTGTTTCCAAAATAATA 59.196 33.333 0.00 0.00 0.00 0.98
845 3111 6.639279 CCGTTTCGAACTGTTTCCAAAATAAT 59.361 34.615 0.00 0.00 0.00 1.28
847 3113 5.296283 TCCGTTTCGAACTGTTTCCAAAATA 59.704 36.000 0.00 0.00 0.00 1.40
848 3114 4.096682 TCCGTTTCGAACTGTTTCCAAAAT 59.903 37.500 0.00 0.00 0.00 1.82
850 3116 3.008330 TCCGTTTCGAACTGTTTCCAAA 58.992 40.909 0.00 0.00 0.00 3.28
851 3117 2.610374 CTCCGTTTCGAACTGTTTCCAA 59.390 45.455 0.00 0.00 0.00 3.53
852 3118 2.159071 TCTCCGTTTCGAACTGTTTCCA 60.159 45.455 0.00 0.00 0.00 3.53
853 3119 2.476821 TCTCCGTTTCGAACTGTTTCC 58.523 47.619 0.00 0.00 0.00 3.13
854 3120 6.404712 AATATCTCCGTTTCGAACTGTTTC 57.595 37.500 0.00 0.00 0.00 2.78
855 3121 6.796705 AAATATCTCCGTTTCGAACTGTTT 57.203 33.333 0.00 0.00 0.00 2.83
856 3122 6.796705 AAAATATCTCCGTTTCGAACTGTT 57.203 33.333 0.00 0.00 0.00 3.16
857 3123 6.796705 AAAAATATCTCCGTTTCGAACTGT 57.203 33.333 0.00 0.00 0.00 3.55
858 3124 9.769093 AAATAAAAATATCTCCGTTTCGAACTG 57.231 29.630 0.00 0.00 0.00 3.16
876 3142 8.373992 CGTTCCGAACTGTTTTCAAAATAAAAA 58.626 29.630 9.55 0.00 30.53 1.94
877 3143 7.009357 CCGTTCCGAACTGTTTTCAAAATAAAA 59.991 33.333 9.55 0.00 0.00 1.52
878 3144 6.472808 CCGTTCCGAACTGTTTTCAAAATAAA 59.527 34.615 9.55 0.00 0.00 1.40
879 3145 5.972382 CCGTTCCGAACTGTTTTCAAAATAA 59.028 36.000 9.55 0.00 0.00 1.40
880 3146 5.296283 TCCGTTCCGAACTGTTTTCAAAATA 59.704 36.000 9.55 0.00 0.00 1.40
881 3147 4.096682 TCCGTTCCGAACTGTTTTCAAAAT 59.903 37.500 9.55 0.00 0.00 1.82
898 3164 1.597663 CTCAACACAACACCTCCGTTC 59.402 52.381 0.00 0.00 0.00 3.95
1021 3288 0.178990 GTGGAGTCCTGGCCTGTTTT 60.179 55.000 11.33 0.00 0.00 2.43
1114 3385 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1115 3386 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1116 3387 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1117 3388 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1118 3389 1.152839 GACGAGGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
1119 3390 1.152839 GGACGAGGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
1282 3553 2.319410 CTACCTGGGGAGGAGGAGGG 62.319 70.000 0.00 0.00 34.37 4.30
1305 3585 0.598562 AACGTCACGAGATCAGCAGT 59.401 50.000 2.91 0.00 0.00 4.40
1333 3613 1.066573 CCCGTGCACAGAGAAGAAGAT 60.067 52.381 18.64 0.00 0.00 2.40
1369 3649 3.334691 TCTGTTACGCCAAGAATCAAGG 58.665 45.455 0.00 0.00 0.00 3.61
1974 4295 1.713597 TGAGATGCAACTGCGTGTAG 58.286 50.000 0.00 0.00 45.83 2.74
2008 4329 8.627208 ATCTCAAGATATGTTCACACAAAACT 57.373 30.769 0.00 0.00 36.16 2.66
2054 4419 5.221165 CGTCAATTAACCACCTGTTCCTTTT 60.221 40.000 0.00 0.00 38.42 2.27
2055 4420 4.277423 CGTCAATTAACCACCTGTTCCTTT 59.723 41.667 0.00 0.00 38.42 3.11
2109 4479 1.981256 TGGCACCCAAAAGAGAACTC 58.019 50.000 0.00 0.00 0.00 3.01
2110 4480 2.452600 TTGGCACCCAAAAGAGAACT 57.547 45.000 0.00 0.00 40.92 3.01
2127 4497 1.530720 GTTTACCCGTGTACCCGTTTG 59.469 52.381 0.00 0.00 0.00 2.93
2138 4508 2.339712 CGTCCGGTGTTTACCCGT 59.660 61.111 0.00 0.00 44.53 5.28
2282 4677 2.161410 TGAATTACAACATGAGCGCACC 59.839 45.455 11.47 0.50 0.00 5.01
2285 4680 5.801947 AGAAAATGAATTACAACATGAGCGC 59.198 36.000 0.00 0.00 0.00 5.92
2287 4682 7.542025 AGGAGAAAATGAATTACAACATGAGC 58.458 34.615 0.00 0.00 0.00 4.26
2288 4683 7.907045 CGAGGAGAAAATGAATTACAACATGAG 59.093 37.037 0.00 0.00 0.00 2.90
2289 4684 7.390440 ACGAGGAGAAAATGAATTACAACATGA 59.610 33.333 0.00 0.00 0.00 3.07
2290 4685 7.530010 ACGAGGAGAAAATGAATTACAACATG 58.470 34.615 0.00 0.00 0.00 3.21
2291 4686 7.687941 ACGAGGAGAAAATGAATTACAACAT 57.312 32.000 0.00 0.00 0.00 2.71
2292 4687 7.658167 TGTACGAGGAGAAAATGAATTACAACA 59.342 33.333 0.00 0.00 0.00 3.33
2293 4688 8.025243 TGTACGAGGAGAAAATGAATTACAAC 57.975 34.615 0.00 0.00 0.00 3.32
2294 4689 8.610248 TTGTACGAGGAGAAAATGAATTACAA 57.390 30.769 0.00 0.00 0.00 2.41
2295 4690 8.500773 GTTTGTACGAGGAGAAAATGAATTACA 58.499 33.333 0.00 0.00 0.00 2.41
2333 4729 1.006102 CCAGTCACTGTCCACGGAC 60.006 63.158 9.38 9.38 44.77 4.79
2334 4730 2.207229 CCCAGTCACTGTCCACGGA 61.207 63.158 3.56 0.00 0.00 4.69
2335 4731 2.343758 CCCAGTCACTGTCCACGG 59.656 66.667 3.56 0.00 0.00 4.94
2336 4732 1.532604 TAGCCCAGTCACTGTCCACG 61.533 60.000 3.56 0.00 0.00 4.94
2337 4733 0.037232 GTAGCCCAGTCACTGTCCAC 60.037 60.000 3.56 0.00 0.00 4.02
2338 4734 0.471022 TGTAGCCCAGTCACTGTCCA 60.471 55.000 3.56 0.00 0.00 4.02
2339 4735 0.037232 GTGTAGCCCAGTCACTGTCC 60.037 60.000 3.56 0.00 0.00 4.02
2340 4736 0.679505 TGTGTAGCCCAGTCACTGTC 59.320 55.000 3.56 0.00 33.82 3.51
2341 4737 0.393077 GTGTGTAGCCCAGTCACTGT 59.607 55.000 3.56 0.00 33.82 3.55
2342 4738 0.392706 TGTGTGTAGCCCAGTCACTG 59.607 55.000 0.00 0.00 33.82 3.66
2343 4739 1.128200 TTGTGTGTAGCCCAGTCACT 58.872 50.000 0.00 0.00 33.82 3.41
2344 4740 1.961793 TTTGTGTGTAGCCCAGTCAC 58.038 50.000 0.00 0.00 0.00 3.67
2345 4741 2.685897 GTTTTTGTGTGTAGCCCAGTCA 59.314 45.455 0.00 0.00 0.00 3.41
2346 4742 2.034179 GGTTTTTGTGTGTAGCCCAGTC 59.966 50.000 0.00 0.00 0.00 3.51
2347 4743 2.028876 GGTTTTTGTGTGTAGCCCAGT 58.971 47.619 0.00 0.00 0.00 4.00
2348 4744 2.028130 TGGTTTTTGTGTGTAGCCCAG 58.972 47.619 0.00 0.00 0.00 4.45
2349 4745 2.145397 TGGTTTTTGTGTGTAGCCCA 57.855 45.000 0.00 0.00 0.00 5.36
2350 4746 2.890945 AGATGGTTTTTGTGTGTAGCCC 59.109 45.455 0.00 0.00 0.00 5.19
2351 4747 3.305335 CCAGATGGTTTTTGTGTGTAGCC 60.305 47.826 0.00 0.00 0.00 3.93
2352 4748 3.900941 CCAGATGGTTTTTGTGTGTAGC 58.099 45.455 0.00 0.00 0.00 3.58
2365 4761 4.228210 AGGTTCATGAATGTACCAGATGGT 59.772 41.667 12.12 9.88 46.80 3.55
2366 4762 4.785301 AGGTTCATGAATGTACCAGATGG 58.215 43.478 12.12 0.00 46.80 3.51
2367 4763 5.430886 TGAGGTTCATGAATGTACCAGATG 58.569 41.667 12.12 0.00 46.80 2.90
2368 4764 5.698741 TGAGGTTCATGAATGTACCAGAT 57.301 39.130 12.12 1.56 46.80 2.90
2369 4765 5.497464 TTGAGGTTCATGAATGTACCAGA 57.503 39.130 12.12 4.55 46.80 3.86
2370 4766 5.473162 TGTTTGAGGTTCATGAATGTACCAG 59.527 40.000 12.12 0.00 46.80 4.00
2371 4767 5.380900 TGTTTGAGGTTCATGAATGTACCA 58.619 37.500 12.12 3.48 46.80 3.25
2372 4768 5.957842 TGTTTGAGGTTCATGAATGTACC 57.042 39.130 12.12 8.85 45.34 3.34
2373 4769 7.144722 TGATGTTTGAGGTTCATGAATGTAC 57.855 36.000 12.12 0.00 0.00 2.90
2374 4770 7.943079 ATGATGTTTGAGGTTCATGAATGTA 57.057 32.000 12.12 0.00 0.00 2.29
2375 4771 6.845758 ATGATGTTTGAGGTTCATGAATGT 57.154 33.333 12.12 1.52 0.00 2.71
2376 4772 7.067859 AGGTATGATGTTTGAGGTTCATGAATG 59.932 37.037 12.12 0.00 31.59 2.67
2377 4773 7.121382 AGGTATGATGTTTGAGGTTCATGAAT 58.879 34.615 12.12 0.00 31.59 2.57
2378 4774 6.484288 AGGTATGATGTTTGAGGTTCATGAA 58.516 36.000 3.38 3.38 31.59 2.57
2379 4775 6.065976 AGGTATGATGTTTGAGGTTCATGA 57.934 37.500 0.00 0.00 31.59 3.07
2380 4776 5.882000 TGAGGTATGATGTTTGAGGTTCATG 59.118 40.000 0.00 0.00 31.59 3.07
2381 4777 6.065976 TGAGGTATGATGTTTGAGGTTCAT 57.934 37.500 0.00 0.00 33.59 2.57
2382 4778 5.497464 TGAGGTATGATGTTTGAGGTTCA 57.503 39.130 0.00 0.00 0.00 3.18
2383 4779 6.817765 TTTGAGGTATGATGTTTGAGGTTC 57.182 37.500 0.00 0.00 0.00 3.62
2384 4780 6.378280 GGATTTGAGGTATGATGTTTGAGGTT 59.622 38.462 0.00 0.00 0.00 3.50
2385 4781 5.888161 GGATTTGAGGTATGATGTTTGAGGT 59.112 40.000 0.00 0.00 0.00 3.85
2386 4782 5.887598 TGGATTTGAGGTATGATGTTTGAGG 59.112 40.000 0.00 0.00 0.00 3.86
2387 4783 7.578310 ATGGATTTGAGGTATGATGTTTGAG 57.422 36.000 0.00 0.00 0.00 3.02
2388 4784 8.274322 ACTATGGATTTGAGGTATGATGTTTGA 58.726 33.333 0.00 0.00 0.00 2.69
2389 4785 8.347771 CACTATGGATTTGAGGTATGATGTTTG 58.652 37.037 0.00 0.00 0.00 2.93
2390 4786 7.503566 CCACTATGGATTTGAGGTATGATGTTT 59.496 37.037 0.00 0.00 40.96 2.83
2391 4787 7.000472 CCACTATGGATTTGAGGTATGATGTT 59.000 38.462 0.00 0.00 40.96 2.71
2392 4788 6.101734 ACCACTATGGATTTGAGGTATGATGT 59.898 38.462 0.84 0.00 40.96 3.06
2393 4789 6.537355 ACCACTATGGATTTGAGGTATGATG 58.463 40.000 0.84 0.00 40.96 3.07
2394 4790 6.770286 ACCACTATGGATTTGAGGTATGAT 57.230 37.500 0.84 0.00 40.96 2.45
2395 4791 6.575244 AACCACTATGGATTTGAGGTATGA 57.425 37.500 0.84 0.00 40.96 2.15
2396 4792 7.094634 GCATAACCACTATGGATTTGAGGTATG 60.095 40.741 0.84 0.00 40.96 2.39
2397 4793 6.942576 GCATAACCACTATGGATTTGAGGTAT 59.057 38.462 0.84 0.00 40.96 2.73
2398 4794 6.126623 TGCATAACCACTATGGATTTGAGGTA 60.127 38.462 0.84 0.00 40.96 3.08
2399 4795 5.133221 GCATAACCACTATGGATTTGAGGT 58.867 41.667 0.84 0.00 40.96 3.85
2400 4796 5.009010 GTGCATAACCACTATGGATTTGAGG 59.991 44.000 0.84 0.00 40.96 3.86
2401 4797 5.589855 TGTGCATAACCACTATGGATTTGAG 59.410 40.000 0.84 0.00 40.96 3.02
2402 4798 5.504853 TGTGCATAACCACTATGGATTTGA 58.495 37.500 0.84 0.00 40.96 2.69
2403 4799 5.833406 TGTGCATAACCACTATGGATTTG 57.167 39.130 0.84 0.00 40.96 2.32
2404 4800 6.606796 TCAATGTGCATAACCACTATGGATTT 59.393 34.615 0.84 0.00 40.96 2.17
2405 4801 6.128486 TCAATGTGCATAACCACTATGGATT 58.872 36.000 0.84 0.00 40.96 3.01
2406 4802 5.693961 TCAATGTGCATAACCACTATGGAT 58.306 37.500 0.84 0.00 40.96 3.41
2407 4803 5.109500 TCAATGTGCATAACCACTATGGA 57.891 39.130 0.84 0.00 40.96 3.41
2408 4804 5.833406 TTCAATGTGCATAACCACTATGG 57.167 39.130 0.00 0.00 45.02 2.74
2409 4805 6.531240 GGTTTTCAATGTGCATAACCACTATG 59.469 38.462 8.79 0.00 40.50 2.23
2410 4806 6.437162 AGGTTTTCAATGTGCATAACCACTAT 59.563 34.615 13.74 0.00 37.95 2.12
2411 4807 5.772672 AGGTTTTCAATGTGCATAACCACTA 59.227 36.000 13.74 0.00 37.95 2.74
2412 4808 4.588528 AGGTTTTCAATGTGCATAACCACT 59.411 37.500 13.74 0.00 37.95 4.00
2413 4809 4.881920 AGGTTTTCAATGTGCATAACCAC 58.118 39.130 13.74 0.00 37.95 4.16
2414 4810 5.335269 CGTAGGTTTTCAATGTGCATAACCA 60.335 40.000 13.74 0.00 37.95 3.67
2415 4811 5.092781 CGTAGGTTTTCAATGTGCATAACC 58.907 41.667 0.00 6.51 36.22 2.85
2416 4812 5.695818 ACGTAGGTTTTCAATGTGCATAAC 58.304 37.500 0.00 0.00 0.00 1.89
2417 4813 5.950758 ACGTAGGTTTTCAATGTGCATAA 57.049 34.783 0.00 0.00 0.00 1.90
2418 4814 6.167685 AGTACGTAGGTTTTCAATGTGCATA 58.832 36.000 0.00 0.00 0.00 3.14
2419 4815 5.001232 AGTACGTAGGTTTTCAATGTGCAT 58.999 37.500 0.00 0.00 0.00 3.96
2420 4816 4.382291 AGTACGTAGGTTTTCAATGTGCA 58.618 39.130 0.00 0.00 0.00 4.57
2421 4817 5.443693 CGTAGTACGTAGGTTTTCAATGTGC 60.444 44.000 14.62 0.00 36.74 4.57
2422 4818 6.074398 CGTAGTACGTAGGTTTTCAATGTG 57.926 41.667 14.62 0.00 36.74 3.21
2439 4835 7.516198 AAAGAAACAGAAGGAGTACGTAGTA 57.484 36.000 2.11 0.00 45.11 1.82
2441 4837 7.710766 AAAAAGAAACAGAAGGAGTACGTAG 57.289 36.000 0.00 0.00 0.00 3.51
2442 4838 8.416329 AGTAAAAAGAAACAGAAGGAGTACGTA 58.584 33.333 0.00 0.00 0.00 3.57
2443 4839 7.270779 AGTAAAAAGAAACAGAAGGAGTACGT 58.729 34.615 0.00 0.00 0.00 3.57
2444 4840 7.710766 AGTAAAAAGAAACAGAAGGAGTACG 57.289 36.000 0.00 0.00 0.00 3.67
2445 4841 9.717892 CAAAGTAAAAAGAAACAGAAGGAGTAC 57.282 33.333 0.00 0.00 0.00 2.73
2446 4842 8.403236 GCAAAGTAAAAAGAAACAGAAGGAGTA 58.597 33.333 0.00 0.00 0.00 2.59
2447 4843 7.093945 TGCAAAGTAAAAAGAAACAGAAGGAGT 60.094 33.333 0.00 0.00 0.00 3.85
2448 4844 7.257722 TGCAAAGTAAAAAGAAACAGAAGGAG 58.742 34.615 0.00 0.00 0.00 3.69
2449 4845 7.164230 TGCAAAGTAAAAAGAAACAGAAGGA 57.836 32.000 0.00 0.00 0.00 3.36
2450 4846 7.492344 ACATGCAAAGTAAAAAGAAACAGAAGG 59.508 33.333 0.00 0.00 0.00 3.46
2451 4847 8.411318 ACATGCAAAGTAAAAAGAAACAGAAG 57.589 30.769 0.00 0.00 0.00 2.85
2452 4848 9.862371 TTACATGCAAAGTAAAAAGAAACAGAA 57.138 25.926 11.38 0.00 0.00 3.02
2453 4849 9.515020 CTTACATGCAAAGTAAAAAGAAACAGA 57.485 29.630 13.85 0.00 31.66 3.41
2454 4850 9.515020 TCTTACATGCAAAGTAAAAAGAAACAG 57.485 29.630 13.85 2.73 31.66 3.16
2506 4902 6.056236 GCCCCCTCTATAAACTTAGTCAAAG 58.944 44.000 0.00 0.00 41.33 2.77
2507 4903 5.489637 TGCCCCCTCTATAAACTTAGTCAAA 59.510 40.000 0.00 0.00 0.00 2.69
2508 4904 5.034200 TGCCCCCTCTATAAACTTAGTCAA 58.966 41.667 0.00 0.00 0.00 3.18
2509 4905 4.407945 GTGCCCCCTCTATAAACTTAGTCA 59.592 45.833 0.00 0.00 0.00 3.41
2510 4906 4.501058 CGTGCCCCCTCTATAAACTTAGTC 60.501 50.000 0.00 0.00 0.00 2.59
2511 4907 3.387050 CGTGCCCCCTCTATAAACTTAGT 59.613 47.826 0.00 0.00 0.00 2.24
2512 4908 3.802675 GCGTGCCCCCTCTATAAACTTAG 60.803 52.174 0.00 0.00 0.00 2.18
2513 4909 2.103601 GCGTGCCCCCTCTATAAACTTA 59.896 50.000 0.00 0.00 0.00 2.24
2514 4910 1.134189 GCGTGCCCCCTCTATAAACTT 60.134 52.381 0.00 0.00 0.00 2.66
2515 4911 0.468648 GCGTGCCCCCTCTATAAACT 59.531 55.000 0.00 0.00 0.00 2.66
2516 4912 0.534427 GGCGTGCCCCCTCTATAAAC 60.534 60.000 0.00 0.00 0.00 2.01
2517 4913 0.983905 TGGCGTGCCCCCTCTATAAA 60.984 55.000 8.69 0.00 34.56 1.40
2518 4914 1.383386 TGGCGTGCCCCCTCTATAA 60.383 57.895 8.69 0.00 34.56 0.98
2519 4915 1.837051 CTGGCGTGCCCCCTCTATA 60.837 63.158 8.69 0.00 34.56 1.31
2520 4916 3.164269 CTGGCGTGCCCCCTCTAT 61.164 66.667 8.69 0.00 34.56 1.98
2521 4917 4.392166 TCTGGCGTGCCCCCTCTA 62.392 66.667 8.69 0.00 34.56 2.43
2533 4929 2.730672 CGTAAGCTGTGCGTCTGGC 61.731 63.158 0.00 0.00 43.96 4.85
2534 4930 2.094659 CCGTAAGCTGTGCGTCTGG 61.095 63.158 0.00 0.00 32.79 3.86
2535 4931 1.344942 GACCGTAAGCTGTGCGTCTG 61.345 60.000 0.00 0.00 32.79 3.51
2536 4932 1.080705 GACCGTAAGCTGTGCGTCT 60.081 57.895 0.00 0.00 32.79 4.18
2537 4933 1.071567 GAGACCGTAAGCTGTGCGTC 61.072 60.000 0.00 0.00 32.79 5.19
2538 4934 1.080705 GAGACCGTAAGCTGTGCGT 60.081 57.895 0.00 0.00 32.79 5.24
2539 4935 2.152699 CGAGACCGTAAGCTGTGCG 61.153 63.158 0.00 0.00 34.74 5.34
2540 4936 1.805945 CCGAGACCGTAAGCTGTGC 60.806 63.158 0.00 0.00 0.00 4.57
2541 4937 1.805945 GCCGAGACCGTAAGCTGTG 60.806 63.158 0.00 0.00 0.00 3.66
2542 4938 2.572284 GCCGAGACCGTAAGCTGT 59.428 61.111 0.00 0.00 0.00 4.40
2543 4939 2.579787 CGCCGAGACCGTAAGCTG 60.580 66.667 0.00 0.00 0.00 4.24
2544 4940 3.048941 GACGCCGAGACCGTAAGCT 62.049 63.158 0.00 0.00 39.30 3.74
2545 4941 2.578981 GACGCCGAGACCGTAAGC 60.579 66.667 0.00 0.00 39.30 3.09
2546 4942 1.062206 GAGACGCCGAGACCGTAAG 59.938 63.158 0.00 0.00 39.30 2.34
2547 4943 2.401766 GGAGACGCCGAGACCGTAA 61.402 63.158 0.00 0.00 39.30 3.18
2548 4944 2.821366 GGAGACGCCGAGACCGTA 60.821 66.667 0.00 0.00 39.30 4.02
2569 4965 3.850098 AAGGTTCACAGGCGCAGGG 62.850 63.158 10.83 1.34 0.00 4.45
2570 4966 2.281761 AAGGTTCACAGGCGCAGG 60.282 61.111 10.83 2.10 0.00 4.85
2571 4967 2.620112 CCAAGGTTCACAGGCGCAG 61.620 63.158 10.83 3.04 0.00 5.18
2572 4968 2.594303 CCAAGGTTCACAGGCGCA 60.594 61.111 10.83 0.00 0.00 6.09
2573 4969 4.043200 GCCAAGGTTCACAGGCGC 62.043 66.667 0.00 0.00 37.41 6.53
2575 4971 2.270986 CCTGCCAAGGTTCACAGGC 61.271 63.158 0.00 0.00 42.96 4.85
2576 4972 4.085876 CCTGCCAAGGTTCACAGG 57.914 61.111 0.00 0.00 43.45 4.00
2589 4985 0.598065 CAGTGGCTTGGTAAACCTGC 59.402 55.000 0.02 5.11 36.82 4.85
2590 4986 1.981256 ACAGTGGCTTGGTAAACCTG 58.019 50.000 0.02 0.00 36.82 4.00
2591 4987 2.583143 GAACAGTGGCTTGGTAAACCT 58.417 47.619 0.02 0.00 36.82 3.50
2592 4988 1.611977 GGAACAGTGGCTTGGTAAACC 59.388 52.381 0.00 0.00 0.00 3.27
2593 4989 2.293399 CAGGAACAGTGGCTTGGTAAAC 59.707 50.000 0.00 0.00 0.00 2.01
2594 4990 2.092103 ACAGGAACAGTGGCTTGGTAAA 60.092 45.455 0.00 0.00 0.00 2.01
2595 4991 1.493022 ACAGGAACAGTGGCTTGGTAA 59.507 47.619 0.00 0.00 0.00 2.85
2596 4992 1.071699 GACAGGAACAGTGGCTTGGTA 59.928 52.381 0.00 0.00 0.00 3.25
2597 4993 0.179018 GACAGGAACAGTGGCTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
2598 4994 0.109342 AGACAGGAACAGTGGCTTGG 59.891 55.000 0.00 0.00 23.24 3.61
2599 4995 1.233019 CAGACAGGAACAGTGGCTTG 58.767 55.000 0.00 0.00 27.24 4.01
2600 4996 0.536006 GCAGACAGGAACAGTGGCTT 60.536 55.000 0.00 0.00 27.24 4.35
2601 4997 1.072159 GCAGACAGGAACAGTGGCT 59.928 57.895 0.00 0.00 31.38 4.75
2602 4998 2.320587 CGCAGACAGGAACAGTGGC 61.321 63.158 0.00 0.00 0.00 5.01
2603 4999 2.320587 GCGCAGACAGGAACAGTGG 61.321 63.158 0.30 0.00 0.00 4.00
2604 5000 2.320587 GGCGCAGACAGGAACAGTG 61.321 63.158 10.83 0.00 31.66 3.66
2605 5001 2.031163 GGCGCAGACAGGAACAGT 59.969 61.111 10.83 0.00 31.66 3.55
2606 5002 2.031516 CAGGCGCAGACAGGAACAG 61.032 63.158 10.83 0.00 39.87 3.16
2607 5003 2.031012 CAGGCGCAGACAGGAACA 59.969 61.111 10.83 0.00 39.87 3.18
2608 5004 1.739562 CTCAGGCGCAGACAGGAAC 60.740 63.158 10.83 0.00 39.87 3.62
2609 5005 2.659016 CTCAGGCGCAGACAGGAA 59.341 61.111 10.83 0.00 39.87 3.36
2610 5006 4.074526 GCTCAGGCGCAGACAGGA 62.075 66.667 10.83 0.00 39.87 3.86
2611 5007 4.383861 TGCTCAGGCGCAGACAGG 62.384 66.667 10.83 0.00 39.87 4.00
2612 5008 3.117171 GTGCTCAGGCGCAGACAG 61.117 66.667 10.83 0.00 46.98 3.51
2694 5090 3.787001 GAGGAGCGGGAAGGGTGG 61.787 72.222 0.00 0.00 0.00 4.61
2695 5091 2.245438 GAAGAGGAGCGGGAAGGGTG 62.245 65.000 0.00 0.00 0.00 4.61
2696 5092 1.990614 GAAGAGGAGCGGGAAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
2697 5093 2.904131 GAAGAGGAGCGGGAAGGG 59.096 66.667 0.00 0.00 0.00 3.95
2698 5094 2.496817 CGAAGAGGAGCGGGAAGG 59.503 66.667 0.00 0.00 0.00 3.46
2699 5095 2.202810 GCGAAGAGGAGCGGGAAG 60.203 66.667 0.00 0.00 0.00 3.46
2700 5096 3.771160 GGCGAAGAGGAGCGGGAA 61.771 66.667 0.00 0.00 0.00 3.97
2702 5098 3.854669 ATGGCGAAGAGGAGCGGG 61.855 66.667 0.00 0.00 0.00 6.13
2703 5099 2.587194 CATGGCGAAGAGGAGCGG 60.587 66.667 0.00 0.00 0.00 5.52
2704 5100 2.587194 CCATGGCGAAGAGGAGCG 60.587 66.667 0.00 0.00 0.00 5.03
2705 5101 1.522580 GTCCATGGCGAAGAGGAGC 60.523 63.158 6.96 0.00 0.00 4.70
2706 5102 1.227089 CGTCCATGGCGAAGAGGAG 60.227 63.158 19.72 0.00 0.00 3.69
2707 5103 2.892640 CGTCCATGGCGAAGAGGA 59.107 61.111 19.72 0.00 0.00 3.71
2708 5104 2.892425 GCGTCCATGGCGAAGAGG 60.892 66.667 26.00 8.84 0.00 3.69
2709 5105 2.892425 GGCGTCCATGGCGAAGAG 60.892 66.667 26.00 7.84 0.00 2.85
2710 5106 3.664025 CTGGCGTCCATGGCGAAGA 62.664 63.158 26.00 11.53 37.19 2.87
2711 5107 3.197790 CTGGCGTCCATGGCGAAG 61.198 66.667 26.00 19.00 37.19 3.79
2725 5121 4.320456 AGTGTGAGTGCGGGCTGG 62.320 66.667 0.00 0.00 0.00 4.85
2726 5122 2.740055 GAGTGTGAGTGCGGGCTG 60.740 66.667 0.00 0.00 0.00 4.85
2727 5123 4.008933 GGAGTGTGAGTGCGGGCT 62.009 66.667 0.00 0.00 0.00 5.19
2732 5128 3.106407 GTCGCGGAGTGTGAGTGC 61.106 66.667 6.13 0.00 37.89 4.40
2733 5129 2.430921 GGTCGCGGAGTGTGAGTG 60.431 66.667 6.13 0.00 37.89 3.51
2734 5130 2.597805 AGGTCGCGGAGTGTGAGT 60.598 61.111 6.13 0.00 37.89 3.41
2735 5131 2.179517 GAGGTCGCGGAGTGTGAG 59.820 66.667 6.13 0.00 37.89 3.51
2736 5132 3.733960 CGAGGTCGCGGAGTGTGA 61.734 66.667 6.13 0.00 40.08 3.58
2765 5161 0.527817 CAGATACGACAGGGCGTTCC 60.528 60.000 5.13 0.00 42.71 3.62
2766 5162 0.527817 CCAGATACGACAGGGCGTTC 60.528 60.000 5.13 3.71 42.71 3.95
2767 5163 1.515954 CCAGATACGACAGGGCGTT 59.484 57.895 5.13 0.00 42.71 4.84
2769 5165 2.279517 GCCAGATACGACAGGGCG 60.280 66.667 0.00 0.00 34.56 6.13
2770 5166 1.972660 AAGGCCAGATACGACAGGGC 61.973 60.000 5.01 0.00 46.14 5.19
2771 5167 0.179073 CAAGGCCAGATACGACAGGG 60.179 60.000 5.01 0.00 0.00 4.45
2772 5168 0.179073 CCAAGGCCAGATACGACAGG 60.179 60.000 5.01 0.00 0.00 4.00
2773 5169 0.537188 ACCAAGGCCAGATACGACAG 59.463 55.000 5.01 0.00 0.00 3.51
2774 5170 0.535335 GACCAAGGCCAGATACGACA 59.465 55.000 5.01 0.00 0.00 4.35
2775 5171 0.824759 AGACCAAGGCCAGATACGAC 59.175 55.000 5.01 0.00 0.00 4.34
2776 5172 0.824109 CAGACCAAGGCCAGATACGA 59.176 55.000 5.01 0.00 0.00 3.43
2777 5173 0.537188 ACAGACCAAGGCCAGATACG 59.463 55.000 5.01 0.00 0.00 3.06
2778 5174 1.471676 CGACAGACCAAGGCCAGATAC 60.472 57.143 5.01 0.00 0.00 2.24
2779 5175 0.824109 CGACAGACCAAGGCCAGATA 59.176 55.000 5.01 0.00 0.00 1.98
2780 5176 1.194781 ACGACAGACCAAGGCCAGAT 61.195 55.000 5.01 0.00 0.00 2.90
2781 5177 1.816863 GACGACAGACCAAGGCCAGA 61.817 60.000 5.01 0.00 0.00 3.86
2782 5178 1.374758 GACGACAGACCAAGGCCAG 60.375 63.158 5.01 0.00 0.00 4.85
2783 5179 2.741092 GACGACAGACCAAGGCCA 59.259 61.111 5.01 0.00 0.00 5.36
2784 5180 2.047179 GGACGACAGACCAAGGCC 60.047 66.667 0.00 0.00 32.40 5.19
2785 5181 1.374758 CAGGACGACAGACCAAGGC 60.375 63.158 0.00 0.00 34.60 4.35
2786 5182 1.374758 GCAGGACGACAGACCAAGG 60.375 63.158 0.00 0.00 34.60 3.61
2787 5183 0.389166 GAGCAGGACGACAGACCAAG 60.389 60.000 0.00 0.00 34.60 3.61
2788 5184 1.666011 GAGCAGGACGACAGACCAA 59.334 57.895 0.00 0.00 34.60 3.67
2789 5185 2.626780 CGAGCAGGACGACAGACCA 61.627 63.158 0.00 0.00 34.60 4.02
2790 5186 2.179517 CGAGCAGGACGACAGACC 59.820 66.667 0.00 0.00 0.00 3.85
2791 5187 2.179517 CCGAGCAGGACGACAGAC 59.820 66.667 0.00 0.00 45.00 3.51
2792 5188 3.749064 GCCGAGCAGGACGACAGA 61.749 66.667 2.12 0.00 45.00 3.41
2824 5220 4.748798 AGGCCTCCACCCCCTCTG 62.749 72.222 0.00 0.00 0.00 3.35
2825 5221 4.423209 GAGGCCTCCACCCCCTCT 62.423 72.222 23.19 0.00 41.50 3.69
2830 5226 4.083862 GTGACGAGGCCTCCACCC 62.084 72.222 27.20 13.42 0.00 4.61
2831 5227 4.436998 CGTGACGAGGCCTCCACC 62.437 72.222 26.89 17.70 0.00 4.61
2832 5228 4.436998 CCGTGACGAGGCCTCCAC 62.437 72.222 27.20 25.69 0.00 4.02
2851 5247 4.504916 CGACCTCAGCAGCCCGAG 62.505 72.222 2.89 2.89 0.00 4.63
2853 5249 4.504916 CTCGACCTCAGCAGCCCG 62.505 72.222 0.00 0.00 0.00 6.13
2854 5250 4.154347 CCTCGACCTCAGCAGCCC 62.154 72.222 0.00 0.00 0.00 5.19
2855 5251 4.154347 CCCTCGACCTCAGCAGCC 62.154 72.222 0.00 0.00 0.00 4.85
2856 5252 4.828925 GCCCTCGACCTCAGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
2857 5253 4.154347 GGCCCTCGACCTCAGCAG 62.154 72.222 0.00 0.00 0.00 4.24
2858 5254 4.704103 AGGCCCTCGACCTCAGCA 62.704 66.667 0.00 0.00 28.76 4.41
2859 5255 4.154347 CAGGCCCTCGACCTCAGC 62.154 72.222 0.00 0.00 34.42 4.26
2860 5256 4.154347 GCAGGCCCTCGACCTCAG 62.154 72.222 0.00 0.00 34.42 3.35
2862 5258 4.154347 CTGCAGGCCCTCGACCTC 62.154 72.222 5.57 0.00 34.42 3.85
2878 5274 4.643387 GTTCCCACGGCACCAGCT 62.643 66.667 0.00 0.00 41.70 4.24
2905 5301 4.335647 ACTTGGCACGCCCAGAGG 62.336 66.667 15.57 0.00 46.39 3.69
2906 5302 3.052082 CACTTGGCACGCCCAGAG 61.052 66.667 15.57 4.27 46.39 3.35
2907 5303 4.641645 CCACTTGGCACGCCCAGA 62.642 66.667 15.57 0.00 46.39 3.86
2908 5304 4.641645 TCCACTTGGCACGCCCAG 62.642 66.667 5.42 6.61 46.39 4.45
2909 5305 4.641645 CTCCACTTGGCACGCCCA 62.642 66.667 5.42 0.00 43.51 5.36
2962 5358 4.821589 GGGAAGACCGCGGCTGAG 62.822 72.222 28.58 0.11 36.97 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.