Multiple sequence alignment - TraesCS6A01G180800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G180800 chr6A 100.000 4319 0 0 1 4319 205101111 205105429 0.000000e+00 7976
1 TraesCS6A01G180800 chr6D 91.822 3497 178 40 64 3502 143404542 143401096 0.000000e+00 4774
2 TraesCS6A01G180800 chr6D 84.184 196 19 8 4125 4319 143400598 143400414 3.430000e-41 180
3 TraesCS6A01G180800 chr6D 82.011 189 11 9 3529 3700 143401101 143400919 5.820000e-29 139
4 TraesCS6A01G180800 chr6B 92.600 2973 130 33 719 3634 255271577 255268638 0.000000e+00 4189
5 TraesCS6A01G180800 chr6B 91.337 658 41 8 64 712 255272617 255271967 0.000000e+00 885
6 TraesCS6A01G180800 chr6B 93.143 350 18 5 3744 4087 255268623 255268274 3.850000e-140 508
7 TraesCS6A01G180800 chr6B 84.559 408 50 7 64 466 255468682 255468283 4.050000e-105 392
8 TraesCS6A01G180800 chr6B 91.102 236 11 2 4084 4319 255268238 255268013 1.170000e-80 311
9 TraesCS6A01G180800 chr6B 87.387 111 12 2 227 337 109102256 109102148 4.530000e-25 126
10 TraesCS6A01G180800 chr5D 80.901 555 65 22 250 775 504576227 504576769 2.420000e-107 399
11 TraesCS6A01G180800 chr7A 79.501 561 74 25 244 775 642891643 642891095 1.140000e-95 361
12 TraesCS6A01G180800 chr4B 78.995 557 72 23 250 776 349151835 349151294 5.350000e-89 339
13 TraesCS6A01G180800 chr1A 79.821 446 56 21 250 667 137799196 137799635 1.170000e-75 294
14 TraesCS6A01G180800 chr3A 77.476 515 82 18 215 711 156130391 156130889 1.180000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G180800 chr6A 205101111 205105429 4318 False 7976.000000 7976 100.000000 1 4319 1 chr6A.!!$F1 4318
1 TraesCS6A01G180800 chr6D 143400414 143404542 4128 True 1697.666667 4774 86.005667 64 4319 3 chr6D.!!$R1 4255
2 TraesCS6A01G180800 chr6B 255268013 255272617 4604 True 1473.250000 4189 92.045500 64 4319 4 chr6B.!!$R3 4255
3 TraesCS6A01G180800 chr5D 504576227 504576769 542 False 399.000000 399 80.901000 250 775 1 chr5D.!!$F1 525
4 TraesCS6A01G180800 chr7A 642891095 642891643 548 True 361.000000 361 79.501000 244 775 1 chr7A.!!$R1 531
5 TraesCS6A01G180800 chr4B 349151294 349151835 541 True 339.000000 339 78.995000 250 776 1 chr4B.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.101399 CTCGCTAACCATCTGACGCT 59.899 55.0 0.00 0.0 0.00 5.07 F
706 1145 0.317160 CCGTTTCCTTTGCCCTTTCC 59.683 55.0 0.00 0.0 0.00 3.13 F
1204 1693 0.033405 TGTTCGGCCTAGCTAGGAGT 60.033 55.0 38.74 0.0 46.63 3.85 F
1948 2440 0.395586 TGTGGCACCTTTTCTGCTGT 60.396 50.0 16.26 0.0 34.84 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1178 1667 0.320421 GCTAGGCCGAACACTTCACA 60.320 55.000 0.0 0.0 0.0 3.58 R
2214 2714 0.631212 ACCTCCCCCATCAACAATCC 59.369 55.000 0.0 0.0 0.0 3.01 R
2354 2854 1.353022 GGTGAAAGGGGTGGTGATGTA 59.647 52.381 0.0 0.0 0.0 2.29 R
3441 3943 0.320596 CCCATGTGGCGTTGCAAATT 60.321 50.000 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.269453 ACACCAACTTGAAACTTATAGAACTAC 57.731 33.333 0.00 0.00 0.00 2.73
27 28 9.268268 CACCAACTTGAAACTTATAGAACTACA 57.732 33.333 0.00 0.00 0.00 2.74
28 29 9.269453 ACCAACTTGAAACTTATAGAACTACAC 57.731 33.333 0.00 0.00 0.00 2.90
29 30 9.268268 CCAACTTGAAACTTATAGAACTACACA 57.732 33.333 0.00 0.00 0.00 3.72
31 32 9.826574 AACTTGAAACTTATAGAACTACACACA 57.173 29.630 0.00 0.00 0.00 3.72
32 33 9.257651 ACTTGAAACTTATAGAACTACACACAC 57.742 33.333 0.00 0.00 0.00 3.82
33 34 7.862741 TGAAACTTATAGAACTACACACACG 57.137 36.000 0.00 0.00 0.00 4.49
34 35 6.364165 TGAAACTTATAGAACTACACACACGC 59.636 38.462 0.00 0.00 0.00 5.34
35 36 4.409570 ACTTATAGAACTACACACACGCG 58.590 43.478 3.53 3.53 0.00 6.01
36 37 4.154737 ACTTATAGAACTACACACACGCGA 59.845 41.667 15.93 0.00 0.00 5.87
37 38 3.777465 ATAGAACTACACACACGCGAT 57.223 42.857 15.93 0.00 0.00 4.58
38 39 1.698165 AGAACTACACACACGCGATG 58.302 50.000 15.93 13.76 0.00 3.84
39 40 1.268625 AGAACTACACACACGCGATGA 59.731 47.619 15.93 0.00 0.00 2.92
40 41 2.055838 GAACTACACACACGCGATGAA 58.944 47.619 15.93 1.65 0.00 2.57
41 42 1.698165 ACTACACACACGCGATGAAG 58.302 50.000 15.93 12.88 0.00 3.02
42 43 1.268625 ACTACACACACGCGATGAAGA 59.731 47.619 15.93 0.71 0.00 2.87
43 44 2.094700 ACTACACACACGCGATGAAGAT 60.095 45.455 15.93 2.24 0.00 2.40
44 45 1.070821 ACACACACGCGATGAAGATG 58.929 50.000 15.93 7.46 0.00 2.90
45 46 0.371301 CACACACGCGATGAAGATGG 59.629 55.000 15.93 0.00 0.00 3.51
46 47 1.349627 CACACGCGATGAAGATGGC 59.650 57.895 15.93 0.00 0.00 4.40
47 48 1.815421 ACACGCGATGAAGATGGCC 60.815 57.895 15.93 0.00 29.77 5.36
48 49 1.815003 CACGCGATGAAGATGGCCA 60.815 57.895 15.93 8.56 29.77 5.36
49 50 1.078497 ACGCGATGAAGATGGCCAA 60.078 52.632 15.93 0.00 29.77 4.52
50 51 0.676466 ACGCGATGAAGATGGCCAAA 60.676 50.000 15.93 0.00 29.77 3.28
51 52 0.664761 CGCGATGAAGATGGCCAAAT 59.335 50.000 10.96 0.00 29.77 2.32
52 53 1.872952 CGCGATGAAGATGGCCAAATA 59.127 47.619 10.96 0.00 29.77 1.40
53 54 2.349817 CGCGATGAAGATGGCCAAATAC 60.350 50.000 10.96 2.65 29.77 1.89
54 55 2.030805 GCGATGAAGATGGCCAAATACC 60.031 50.000 10.96 0.00 0.00 2.73
55 56 2.554032 CGATGAAGATGGCCAAATACCC 59.446 50.000 10.96 0.00 0.00 3.69
56 57 3.565307 GATGAAGATGGCCAAATACCCA 58.435 45.455 10.96 3.76 35.21 4.51
57 58 3.464720 TGAAGATGGCCAAATACCCAA 57.535 42.857 10.96 0.00 34.25 4.12
58 59 3.784178 TGAAGATGGCCAAATACCCAAA 58.216 40.909 10.96 0.00 34.25 3.28
59 60 4.360889 TGAAGATGGCCAAATACCCAAAT 58.639 39.130 10.96 0.00 34.25 2.32
60 61 5.523588 TGAAGATGGCCAAATACCCAAATA 58.476 37.500 10.96 0.00 34.25 1.40
61 62 5.362430 TGAAGATGGCCAAATACCCAAATAC 59.638 40.000 10.96 0.00 34.25 1.89
62 63 5.142806 AGATGGCCAAATACCCAAATACT 57.857 39.130 10.96 0.00 34.25 2.12
85 86 0.101399 CTCGCTAACCATCTGACGCT 59.899 55.000 0.00 0.00 0.00 5.07
98 99 3.934391 GACGCTGTGGTTCCGGGAG 62.934 68.421 0.00 0.00 0.00 4.30
169 170 0.908198 GAGCACCAGAGGAAGTCCAT 59.092 55.000 0.00 0.00 38.89 3.41
213 214 2.884087 TTTCCAGACCTCGATCGCGC 62.884 60.000 11.09 0.00 37.46 6.86
240 241 3.531207 CGGCCCTGATCTCGCTCA 61.531 66.667 0.00 0.00 0.00 4.26
242 243 1.221840 GGCCCTGATCTCGCTCAAA 59.778 57.895 0.00 0.00 0.00 2.69
254 255 1.002366 CGCTCAAATCCTTCAGTCCG 58.998 55.000 0.00 0.00 0.00 4.79
332 333 2.493278 CACATTGATCACCTTCCCAACC 59.507 50.000 0.00 0.00 0.00 3.77
385 392 4.079154 AGGGGAGTATGTGTCTCAGTCATA 60.079 45.833 0.00 0.00 34.04 2.15
387 394 4.261238 GGGAGTATGTGTCTCAGTCATACG 60.261 50.000 0.00 0.00 44.63 3.06
390 397 6.360844 AGTATGTGTCTCAGTCATACGTAC 57.639 41.667 0.00 0.00 44.63 3.67
429 445 4.082026 AGGAATTTACTGCAAGAACATGCC 60.082 41.667 0.00 0.00 45.83 4.40
441 457 1.391157 AACATGCCGTGCAAGTTGGT 61.391 50.000 15.38 1.83 46.26 3.67
676 715 1.079503 CGTCTGTTTTGGCCTCTAGC 58.920 55.000 3.32 0.00 42.60 3.42
698 742 2.978018 GCGCCCTCCGTTTCCTTTG 61.978 63.158 0.00 0.00 39.71 2.77
701 1140 1.977009 CCCTCCGTTTCCTTTGCCC 60.977 63.158 0.00 0.00 0.00 5.36
705 1144 1.269723 CTCCGTTTCCTTTGCCCTTTC 59.730 52.381 0.00 0.00 0.00 2.62
706 1145 0.317160 CCGTTTCCTTTGCCCTTTCC 59.683 55.000 0.00 0.00 0.00 3.13
707 1146 1.328279 CGTTTCCTTTGCCCTTTCCT 58.672 50.000 0.00 0.00 0.00 3.36
708 1147 1.686587 CGTTTCCTTTGCCCTTTCCTT 59.313 47.619 0.00 0.00 0.00 3.36
709 1148 2.102420 CGTTTCCTTTGCCCTTTCCTTT 59.898 45.455 0.00 0.00 0.00 3.11
710 1149 3.431626 CGTTTCCTTTGCCCTTTCCTTTT 60.432 43.478 0.00 0.00 0.00 2.27
711 1150 4.523083 GTTTCCTTTGCCCTTTCCTTTTT 58.477 39.130 0.00 0.00 0.00 1.94
836 1301 1.411651 GCGGCCTAGAGAGGGGAATT 61.412 60.000 0.00 0.00 43.97 2.17
837 1302 2.011122 CGGCCTAGAGAGGGGAATTA 57.989 55.000 0.00 0.00 43.97 1.40
838 1303 2.326428 CGGCCTAGAGAGGGGAATTAA 58.674 52.381 0.00 0.00 43.97 1.40
870 1335 2.602676 CCCGGCTTTCCTTCCTCCA 61.603 63.158 0.00 0.00 0.00 3.86
921 1386 2.084546 GCTTCAAACCCTCGCAAGTAT 58.915 47.619 0.00 0.00 39.48 2.12
972 1456 2.029844 GAGGCGACCACAACAGAGC 61.030 63.158 0.00 0.00 0.00 4.09
973 1457 2.031163 GGCGACCACAACAGAGCT 59.969 61.111 0.00 0.00 0.00 4.09
974 1458 2.029844 GGCGACCACAACAGAGCTC 61.030 63.158 5.27 5.27 0.00 4.09
975 1459 2.029844 GCGACCACAACAGAGCTCC 61.030 63.158 10.93 0.00 0.00 4.70
976 1460 1.374758 CGACCACAACAGAGCTCCC 60.375 63.158 10.93 0.00 0.00 4.30
977 1461 1.754745 GACCACAACAGAGCTCCCA 59.245 57.895 10.93 0.00 0.00 4.37
978 1462 0.603975 GACCACAACAGAGCTCCCAC 60.604 60.000 10.93 0.00 0.00 4.61
980 1464 1.669115 CACAACAGAGCTCCCACCG 60.669 63.158 10.93 0.00 0.00 4.94
1178 1667 2.200373 ACTTTCCGGTAGCAGCAAAT 57.800 45.000 0.00 0.00 0.00 2.32
1186 1675 2.413239 CGGTAGCAGCAAATGTGAAGTG 60.413 50.000 0.00 0.00 0.00 3.16
1190 1679 2.046313 GCAGCAAATGTGAAGTGTTCG 58.954 47.619 0.00 0.00 0.00 3.95
1197 1686 0.320421 TGTGAAGTGTTCGGCCTAGC 60.320 55.000 0.00 0.00 0.00 3.42
1204 1693 0.033405 TGTTCGGCCTAGCTAGGAGT 60.033 55.000 38.74 0.00 46.63 3.85
1216 1705 3.900971 AGCTAGGAGTACCTGTACTTCC 58.099 50.000 11.05 12.54 45.63 3.46
1217 1706 3.268856 AGCTAGGAGTACCTGTACTTCCA 59.731 47.826 19.17 6.32 45.63 3.53
1218 1707 3.380954 GCTAGGAGTACCTGTACTTCCAC 59.619 52.174 19.17 9.65 45.63 4.02
1219 1708 2.444421 AGGAGTACCTGTACTTCCACG 58.556 52.381 19.17 0.00 45.63 4.94
1220 1709 2.040813 AGGAGTACCTGTACTTCCACGA 59.959 50.000 19.17 0.00 45.63 4.35
1221 1710 2.422832 GGAGTACCTGTACTTCCACGAG 59.577 54.545 11.05 0.00 45.63 4.18
1244 1733 0.878961 CCAAGGCCGATTACTACGCC 60.879 60.000 0.00 0.00 0.00 5.68
1246 1735 2.355481 GGCCGATTACTACGCCCG 60.355 66.667 0.00 0.00 0.00 6.13
1319 1808 6.473455 CGAAATGAGCCTGGATTTAAATCAAC 59.527 38.462 25.55 12.55 37.15 3.18
1417 1907 3.825014 AGAAGCACAAAATCATGAGCAGT 59.175 39.130 0.09 0.00 39.06 4.40
1418 1908 3.570926 AGCACAAAATCATGAGCAGTG 57.429 42.857 0.09 8.56 39.06 3.66
1471 1961 2.003301 GTCAGGATCAAGCGAACTTCC 58.997 52.381 0.00 0.00 32.29 3.46
1479 1969 2.295349 TCAAGCGAACTTCCGTAGTCTT 59.705 45.455 0.00 0.00 35.54 3.01
1487 1977 1.343465 CTTCCGTAGTCTTGGTGGTGT 59.657 52.381 0.00 0.00 0.00 4.16
1533 2023 7.419711 TTCTTTAATCTAGTTCCTGTCGGAT 57.580 36.000 0.00 0.00 39.58 4.18
1539 2029 6.732896 ATCTAGTTCCTGTCGGATTATGTT 57.267 37.500 0.00 0.00 39.58 2.71
1697 2189 6.423905 CGTGGAGATGACTTTGAGAAGTTAAA 59.576 38.462 0.00 0.00 45.88 1.52
1706 2198 8.777413 TGACTTTGAGAAGTTAAACTCATCATG 58.223 33.333 0.00 0.00 45.88 3.07
1725 2217 5.065235 TCATGATTTGTTCTGTTGCTCTCA 58.935 37.500 0.00 0.00 0.00 3.27
1820 2312 8.766476 ACATGGCATGCTAGATTAGTCTAATAT 58.234 33.333 26.70 5.10 36.54 1.28
1870 2362 2.124983 GCTTCAGCAGCGGGATGA 60.125 61.111 7.05 0.00 40.87 2.92
1871 2363 1.525535 GCTTCAGCAGCGGGATGAT 60.526 57.895 0.32 0.00 42.40 2.45
1891 2383 3.893326 TCACAGGTCATTCGTCATGAT 57.107 42.857 0.00 0.00 44.11 2.45
1948 2440 0.395586 TGTGGCACCTTTTCTGCTGT 60.396 50.000 16.26 0.00 34.84 4.40
1984 2476 3.374764 AGGGATTTTGGGGTAGCATTTC 58.625 45.455 0.00 0.00 0.00 2.17
1989 2481 2.799576 TGGGGTAGCATTTCCCAGT 58.200 52.632 0.00 0.00 45.04 4.00
1990 2482 1.974028 TGGGGTAGCATTTCCCAGTA 58.026 50.000 0.00 0.00 45.04 2.74
2157 2650 2.641305 AGAGACCAAATGCTCATGCTC 58.359 47.619 0.00 0.00 40.48 4.26
2174 2667 2.827921 TGCTCTAGACTTGCAGATGTGA 59.172 45.455 1.22 0.00 32.55 3.58
2214 2714 3.117888 AGAACATATACTTGTGGGCAGGG 60.118 47.826 0.00 0.00 0.00 4.45
2292 2792 2.025037 TGGCTGCAGGGATGAATACTTT 60.025 45.455 17.12 0.00 0.00 2.66
2303 2803 5.594926 GGATGAATACTTTTCATGCCCTTG 58.405 41.667 5.61 0.00 40.11 3.61
2346 2846 2.909965 GGTTGCGGCTTTGTGGGA 60.910 61.111 0.00 0.00 0.00 4.37
2354 2854 1.047801 GGCTTTGTGGGAAATGTGGT 58.952 50.000 0.00 0.00 0.00 4.16
2449 2949 2.076863 GCCTACTGAACACATGTCACC 58.923 52.381 0.00 0.00 0.00 4.02
2450 2950 2.337583 CCTACTGAACACATGTCACCG 58.662 52.381 0.00 0.00 0.00 4.94
2463 2963 0.943835 GTCACCGTTGCATTTTGGGC 60.944 55.000 0.00 0.00 0.00 5.36
2474 2974 5.474578 TGCATTTTGGGCTTACACATTTA 57.525 34.783 0.00 0.00 0.00 1.40
2510 3010 1.066143 GGACCCTCGTGTCATTGACAT 60.066 52.381 21.60 5.45 44.63 3.06
2596 3096 0.529337 TGTTGGCAAACGCATGTTGG 60.529 50.000 0.00 0.00 39.30 3.77
2623 3123 3.831911 GTCTTTTTGGGAACATCCATCCA 59.168 43.478 0.00 0.00 42.32 3.41
2665 3165 5.479306 ACTGTTGACTTATGTTAGTCGCAT 58.521 37.500 0.00 0.00 46.00 4.73
2696 3196 2.009774 CTTTTCCTGCTGATGGTACCG 58.990 52.381 7.57 0.00 0.00 4.02
2789 3289 4.202111 CCAACGGAAAACATCCTCAAAACT 60.202 41.667 0.00 0.00 46.98 2.66
2950 3451 9.791801 AAACTGCCATACATTTAAATCCTTTTT 57.208 25.926 0.00 0.00 0.00 1.94
3039 3541 7.889873 TTCTGAGGAAGAAAATGTAAACCAA 57.110 32.000 0.00 0.00 42.09 3.67
3116 3618 4.788679 TGGTCCTGTCTTCTCGTATGATA 58.211 43.478 0.00 0.00 0.00 2.15
3328 3830 0.530650 CACGAGTTGAGTGTGGCAGT 60.531 55.000 0.00 0.00 35.08 4.40
3364 3866 2.550830 ATTCTGTGTTGAGGCTCGTT 57.449 45.000 10.42 0.00 0.00 3.85
3428 3930 7.855409 TGTTTTTATGTGTTTGATGAGAACGAG 59.145 33.333 0.00 0.00 0.00 4.18
3441 3943 8.110860 TGATGAGAACGAGTCATATATGCTTA 57.889 34.615 7.92 0.00 34.69 3.09
3454 3958 2.739885 ATGCTTAATTTGCAACGCCA 57.260 40.000 0.00 0.00 44.01 5.69
3479 3984 6.712095 ACATGGGTGTGATGATGTATAATGTC 59.288 38.462 0.00 0.00 37.14 3.06
3672 4197 8.531146 TCCTTTGGGAATGAGATTTTATGTTTC 58.469 33.333 0.00 0.00 38.93 2.78
3677 4202 6.276091 GGAATGAGATTTTATGTTTCCCTGC 58.724 40.000 0.00 0.00 0.00 4.85
3681 4206 5.014808 AGATTTTATGTTTCCCTGCATGC 57.985 39.130 11.82 11.82 0.00 4.06
3684 4209 1.832883 TATGTTTCCCTGCATGCGTT 58.167 45.000 14.09 0.00 0.00 4.84
3691 4216 2.992593 TCCCTGCATGCGTTGTTATTA 58.007 42.857 14.09 0.00 0.00 0.98
3693 4218 4.709250 TCCCTGCATGCGTTGTTATTATA 58.291 39.130 14.09 0.00 0.00 0.98
3694 4219 5.126779 TCCCTGCATGCGTTGTTATTATAA 58.873 37.500 14.09 0.00 0.00 0.98
3717 4242 7.873739 AATTAATTTTGCACTACTGTCTTGC 57.126 32.000 6.60 6.60 36.76 4.01
3718 4243 4.916983 AATTTTGCACTACTGTCTTGCA 57.083 36.364 11.10 11.10 44.40 4.08
3719 4244 5.458041 AATTTTGCACTACTGTCTTGCAT 57.542 34.783 14.74 1.06 45.35 3.96
3720 4245 4.916983 TTTTGCACTACTGTCTTGCATT 57.083 36.364 14.74 0.00 45.35 3.56
3721 4246 4.916983 TTTGCACTACTGTCTTGCATTT 57.083 36.364 14.74 0.00 45.35 2.32
3722 4247 4.916983 TTGCACTACTGTCTTGCATTTT 57.083 36.364 14.74 0.00 45.35 1.82
3723 4248 4.916983 TGCACTACTGTCTTGCATTTTT 57.083 36.364 11.10 0.00 41.29 1.94
3724 4249 4.858935 TGCACTACTGTCTTGCATTTTTC 58.141 39.130 11.10 0.00 41.29 2.29
3725 4250 4.580167 TGCACTACTGTCTTGCATTTTTCT 59.420 37.500 11.10 0.00 41.29 2.52
3727 4252 5.626955 GCACTACTGTCTTGCATTTTTCTTC 59.373 40.000 8.29 0.00 36.22 2.87
3728 4253 6.514048 GCACTACTGTCTTGCATTTTTCTTCT 60.514 38.462 8.29 0.00 36.22 2.85
3730 4255 7.917505 CACTACTGTCTTGCATTTTTCTTCTTT 59.082 33.333 0.00 0.00 0.00 2.52
3731 4256 7.917505 ACTACTGTCTTGCATTTTTCTTCTTTG 59.082 33.333 0.00 0.00 0.00 2.77
3732 4257 6.633856 ACTGTCTTGCATTTTTCTTCTTTGT 58.366 32.000 0.00 0.00 0.00 2.83
3734 4259 8.416329 ACTGTCTTGCATTTTTCTTCTTTGTAT 58.584 29.630 0.00 0.00 0.00 2.29
3735 4260 9.252962 CTGTCTTGCATTTTTCTTCTTTGTATT 57.747 29.630 0.00 0.00 0.00 1.89
3762 4287 8.822652 AATTTGTCAATTCAGAGATTTTGTCC 57.177 30.769 0.00 0.00 0.00 4.02
3776 4301 4.545823 TTTTGTCCGTAGCTTGTTTCAG 57.454 40.909 0.00 0.00 0.00 3.02
3780 4305 2.987821 GTCCGTAGCTTGTTTCAGACTC 59.012 50.000 0.00 0.00 0.00 3.36
3959 4488 9.988815 ATGGATCTAGTGATACAAGTTTGATAC 57.011 33.333 0.00 0.00 45.72 2.24
4006 4570 4.385358 AACTTGGTAAAACAGGCACAAG 57.615 40.909 0.00 0.00 40.66 3.16
4155 4798 3.625853 TCTCCATGTGTGTTTGGACAAA 58.374 40.909 0.00 0.00 37.10 2.83
4170 4813 6.690194 TTGGACAAATTTTGTTTCCCATTG 57.310 33.333 15.54 0.00 45.52 2.82
4228 4871 5.964758 TGCTTGAGTGAAAATGTCTTTTGT 58.035 33.333 0.00 0.00 34.73 2.83
4235 4878 5.577945 AGTGAAAATGTCTTTTGTGCAAGTG 59.422 36.000 0.00 0.00 34.73 3.16
4302 4945 7.736893 AGTTAAATTGAGTGAGTACAGGAACT 58.263 34.615 0.00 0.00 43.88 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.268268 TGTAGTTCTATAAGTTTCAAGTTGGTG 57.732 33.333 2.34 0.00 0.00 4.17
2 3 9.269453 GTGTAGTTCTATAAGTTTCAAGTTGGT 57.731 33.333 2.34 0.00 0.00 3.67
5 6 9.826574 TGTGTGTAGTTCTATAAGTTTCAAGTT 57.173 29.630 0.00 0.00 0.00 2.66
6 7 9.257651 GTGTGTGTAGTTCTATAAGTTTCAAGT 57.742 33.333 0.00 0.00 0.00 3.16
7 8 8.425491 CGTGTGTGTAGTTCTATAAGTTTCAAG 58.575 37.037 0.00 0.00 0.00 3.02
8 9 7.095940 GCGTGTGTGTAGTTCTATAAGTTTCAA 60.096 37.037 0.00 0.00 0.00 2.69
9 10 6.364165 GCGTGTGTGTAGTTCTATAAGTTTCA 59.636 38.462 0.00 0.00 0.00 2.69
10 11 6.452090 CGCGTGTGTGTAGTTCTATAAGTTTC 60.452 42.308 0.00 0.00 0.00 2.78
11 12 5.344128 CGCGTGTGTGTAGTTCTATAAGTTT 59.656 40.000 0.00 0.00 0.00 2.66
12 13 4.855388 CGCGTGTGTGTAGTTCTATAAGTT 59.145 41.667 0.00 0.00 0.00 2.66
13 14 4.154737 TCGCGTGTGTGTAGTTCTATAAGT 59.845 41.667 5.77 0.00 0.00 2.24
14 15 4.655027 TCGCGTGTGTGTAGTTCTATAAG 58.345 43.478 5.77 0.00 0.00 1.73
15 16 4.683501 TCGCGTGTGTGTAGTTCTATAA 57.316 40.909 5.77 0.00 0.00 0.98
16 17 4.333372 TCATCGCGTGTGTGTAGTTCTATA 59.667 41.667 5.77 0.00 0.00 1.31
17 18 3.128068 TCATCGCGTGTGTGTAGTTCTAT 59.872 43.478 5.77 0.00 0.00 1.98
18 19 2.485038 TCATCGCGTGTGTGTAGTTCTA 59.515 45.455 5.77 0.00 0.00 2.10
19 20 1.268625 TCATCGCGTGTGTGTAGTTCT 59.731 47.619 5.77 0.00 0.00 3.01
20 21 1.693467 TCATCGCGTGTGTGTAGTTC 58.307 50.000 5.77 0.00 0.00 3.01
21 22 2.058798 CTTCATCGCGTGTGTGTAGTT 58.941 47.619 5.77 0.00 0.00 2.24
22 23 1.268625 TCTTCATCGCGTGTGTGTAGT 59.731 47.619 5.77 0.00 0.00 2.73
23 24 1.977188 TCTTCATCGCGTGTGTGTAG 58.023 50.000 5.77 5.08 0.00 2.74
24 25 2.258755 CATCTTCATCGCGTGTGTGTA 58.741 47.619 5.77 0.00 0.00 2.90
25 26 1.070821 CATCTTCATCGCGTGTGTGT 58.929 50.000 5.77 0.00 0.00 3.72
26 27 0.371301 CCATCTTCATCGCGTGTGTG 59.629 55.000 5.77 1.43 0.00 3.82
27 28 1.361668 GCCATCTTCATCGCGTGTGT 61.362 55.000 5.77 0.00 0.00 3.72
28 29 1.349627 GCCATCTTCATCGCGTGTG 59.650 57.895 5.77 6.98 0.00 3.82
29 30 1.815421 GGCCATCTTCATCGCGTGT 60.815 57.895 5.77 0.00 0.00 4.49
30 31 1.368345 TTGGCCATCTTCATCGCGTG 61.368 55.000 6.09 3.96 0.00 5.34
31 32 0.676466 TTTGGCCATCTTCATCGCGT 60.676 50.000 6.09 0.00 0.00 6.01
32 33 0.664761 ATTTGGCCATCTTCATCGCG 59.335 50.000 6.09 0.00 0.00 5.87
33 34 2.030805 GGTATTTGGCCATCTTCATCGC 60.031 50.000 6.09 0.00 0.00 4.58
34 35 2.554032 GGGTATTTGGCCATCTTCATCG 59.446 50.000 6.09 0.00 0.00 3.84
35 36 3.565307 TGGGTATTTGGCCATCTTCATC 58.435 45.455 6.09 0.00 0.00 2.92
36 37 3.686227 TGGGTATTTGGCCATCTTCAT 57.314 42.857 6.09 0.00 0.00 2.57
37 38 3.464720 TTGGGTATTTGGCCATCTTCA 57.535 42.857 6.09 0.00 0.00 3.02
38 39 5.598417 AGTATTTGGGTATTTGGCCATCTTC 59.402 40.000 6.09 0.00 0.00 2.87
39 40 5.528337 AGTATTTGGGTATTTGGCCATCTT 58.472 37.500 6.09 0.00 0.00 2.40
40 41 5.142806 AGTATTTGGGTATTTGGCCATCT 57.857 39.130 6.09 0.00 0.00 2.90
41 42 5.869649 AAGTATTTGGGTATTTGGCCATC 57.130 39.130 6.09 0.00 0.00 3.51
42 43 5.600898 GGTAAGTATTTGGGTATTTGGCCAT 59.399 40.000 6.09 0.00 0.00 4.40
43 44 4.957327 GGTAAGTATTTGGGTATTTGGCCA 59.043 41.667 0.00 0.00 0.00 5.36
44 45 5.205821 AGGTAAGTATTTGGGTATTTGGCC 58.794 41.667 0.00 0.00 0.00 5.36
45 46 5.008316 CGAGGTAAGTATTTGGGTATTTGGC 59.992 44.000 0.00 0.00 0.00 4.52
46 47 5.008316 GCGAGGTAAGTATTTGGGTATTTGG 59.992 44.000 0.00 0.00 0.00 3.28
47 48 5.820947 AGCGAGGTAAGTATTTGGGTATTTG 59.179 40.000 0.00 0.00 0.00 2.32
48 49 5.997843 AGCGAGGTAAGTATTTGGGTATTT 58.002 37.500 0.00 0.00 0.00 1.40
49 50 5.625568 AGCGAGGTAAGTATTTGGGTATT 57.374 39.130 0.00 0.00 0.00 1.89
50 51 6.463472 GGTTAGCGAGGTAAGTATTTGGGTAT 60.463 42.308 0.00 0.00 0.00 2.73
51 52 5.163416 GGTTAGCGAGGTAAGTATTTGGGTA 60.163 44.000 0.00 0.00 0.00 3.69
52 53 4.383444 GGTTAGCGAGGTAAGTATTTGGGT 60.383 45.833 0.00 0.00 0.00 4.51
53 54 4.124970 GGTTAGCGAGGTAAGTATTTGGG 58.875 47.826 0.00 0.00 0.00 4.12
54 55 4.761975 TGGTTAGCGAGGTAAGTATTTGG 58.238 43.478 0.00 0.00 0.00 3.28
55 56 6.201044 CAGATGGTTAGCGAGGTAAGTATTTG 59.799 42.308 0.00 0.00 0.00 2.32
56 57 6.097839 TCAGATGGTTAGCGAGGTAAGTATTT 59.902 38.462 0.00 0.00 0.00 1.40
57 58 5.597182 TCAGATGGTTAGCGAGGTAAGTATT 59.403 40.000 0.00 0.00 0.00 1.89
58 59 5.009811 GTCAGATGGTTAGCGAGGTAAGTAT 59.990 44.000 0.00 0.00 0.00 2.12
59 60 4.337555 GTCAGATGGTTAGCGAGGTAAGTA 59.662 45.833 0.00 0.00 0.00 2.24
60 61 3.130693 GTCAGATGGTTAGCGAGGTAAGT 59.869 47.826 0.00 0.00 0.00 2.24
61 62 3.707793 GTCAGATGGTTAGCGAGGTAAG 58.292 50.000 0.00 0.00 0.00 2.34
62 63 2.098607 CGTCAGATGGTTAGCGAGGTAA 59.901 50.000 0.00 0.00 0.00 2.85
85 86 3.721868 GGATCTCCCGGAACCACA 58.278 61.111 0.73 0.00 36.94 4.17
98 99 2.029666 CCGCTCGTGATGGGGATC 59.970 66.667 0.00 0.00 39.53 3.36
134 135 1.450491 CTCCGAGGAGACGAGCAGA 60.450 63.158 13.69 0.00 44.53 4.26
169 170 3.838271 GCATGAGCTCGGACGGGA 61.838 66.667 9.64 0.00 37.91 5.14
240 241 0.249398 CGGACCGGACTGAAGGATTT 59.751 55.000 9.46 0.00 0.00 2.17
242 243 2.722201 GCGGACCGGACTGAAGGAT 61.722 63.158 17.30 0.00 0.00 3.24
266 267 3.554752 GCAGAGTGAAGATCCTCATAGCC 60.555 52.174 0.00 0.00 0.00 3.93
332 333 5.536161 TCTTCTTTTTGTTTCTCATCAGGGG 59.464 40.000 0.00 0.00 0.00 4.79
402 409 8.405531 GCATGTTCTTGCAGTAAATTCCTTATA 58.594 33.333 0.00 0.00 42.31 0.98
403 410 7.260603 GCATGTTCTTGCAGTAAATTCCTTAT 58.739 34.615 0.00 0.00 42.31 1.73
416 432 1.732417 TTGCACGGCATGTTCTTGCA 61.732 50.000 14.69 14.69 44.59 4.08
423 439 1.795170 GACCAACTTGCACGGCATGT 61.795 55.000 10.28 10.28 46.28 3.21
429 445 1.841663 CTTCCCGACCAACTTGCACG 61.842 60.000 0.00 0.00 0.00 5.34
441 457 0.251033 TCCGACTCTCAACTTCCCGA 60.251 55.000 0.00 0.00 0.00 5.14
709 1148 3.316868 CGAAGGCACAACTCCCTTAAAAA 59.683 43.478 0.00 0.00 41.36 1.94
710 1149 2.882137 CGAAGGCACAACTCCCTTAAAA 59.118 45.455 0.00 0.00 41.36 1.52
711 1150 2.105134 TCGAAGGCACAACTCCCTTAAA 59.895 45.455 0.00 0.00 41.36 1.52
712 1151 1.695242 TCGAAGGCACAACTCCCTTAA 59.305 47.619 0.00 0.00 41.36 1.85
713 1152 1.344065 TCGAAGGCACAACTCCCTTA 58.656 50.000 0.00 0.00 41.36 2.69
714 1153 0.472471 TTCGAAGGCACAACTCCCTT 59.528 50.000 0.00 0.00 43.87 3.95
715 1154 0.693049 ATTCGAAGGCACAACTCCCT 59.307 50.000 3.35 0.00 0.00 4.20
716 1155 1.534729 AATTCGAAGGCACAACTCCC 58.465 50.000 3.35 0.00 0.00 4.30
717 1156 2.293399 ACAAATTCGAAGGCACAACTCC 59.707 45.455 3.35 0.00 0.00 3.85
823 1288 9.515440 TTTCTCCTTTATTAATTCCCCTCTCTA 57.485 33.333 0.00 0.00 0.00 2.43
836 1301 3.053917 AGCCGGGCTTTTCTCCTTTATTA 60.054 43.478 17.69 0.00 33.89 0.98
837 1302 2.100197 GCCGGGCTTTTCTCCTTTATT 58.900 47.619 12.87 0.00 0.00 1.40
838 1303 1.285078 AGCCGGGCTTTTCTCCTTTAT 59.715 47.619 17.69 0.00 33.89 1.40
975 1459 3.760035 CTGAGACGTCCCCGGTGG 61.760 72.222 13.01 0.82 38.78 4.61
976 1460 4.436998 GCTGAGACGTCCCCGGTG 62.437 72.222 13.01 0.00 38.78 4.94
977 1461 4.680537 AGCTGAGACGTCCCCGGT 62.681 66.667 13.01 0.00 38.78 5.28
978 1462 3.827898 GAGCTGAGACGTCCCCGG 61.828 72.222 13.01 10.82 38.78 5.73
980 1464 1.112113 TTATGAGCTGAGACGTCCCC 58.888 55.000 13.01 5.21 0.00 4.81
1178 1667 0.320421 GCTAGGCCGAACACTTCACA 60.320 55.000 0.00 0.00 0.00 3.58
1186 1675 1.608109 GTACTCCTAGCTAGGCCGAAC 59.392 57.143 31.76 21.89 43.31 3.95
1190 1679 1.133419 ACAGGTACTCCTAGCTAGGCC 60.133 57.143 31.76 25.80 43.07 5.19
1197 1686 3.626670 CGTGGAAGTACAGGTACTCCTAG 59.373 52.174 12.17 9.38 44.96 3.02
1204 1693 1.180029 GGCTCGTGGAAGTACAGGTA 58.820 55.000 0.00 0.00 0.00 3.08
1246 1735 1.271379 GACAACAAATTCCGGTTCCCC 59.729 52.381 0.00 0.00 0.00 4.81
1319 1808 4.699257 ACTCTTGGCTGATTAGAGCTTTTG 59.301 41.667 0.00 0.00 39.17 2.44
1333 1822 0.532862 CGTGTTGTCCACTCTTGGCT 60.533 55.000 0.00 0.00 43.56 4.75
1344 1833 3.981211 TGGGTTCTAAGTACGTGTTGTC 58.019 45.455 0.00 0.00 0.00 3.18
1352 1841 3.746492 CAGCAGTGTTGGGTTCTAAGTAC 59.254 47.826 0.00 0.00 0.00 2.73
1494 1984 8.273923 AGATTAAAGAATGGAGGAAGCTAGAT 57.726 34.615 0.00 0.00 0.00 1.98
1533 2023 7.607607 AGAACACTCAGCATCATGTTAACATAA 59.392 33.333 20.39 7.40 35.47 1.90
1539 2029 5.412594 GGAAAGAACACTCAGCATCATGTTA 59.587 40.000 0.00 0.00 35.47 2.41
1697 2189 5.475909 AGCAACAGAACAAATCATGATGAGT 59.524 36.000 9.46 8.18 0.00 3.41
1706 2198 3.803555 CGTGAGAGCAACAGAACAAATC 58.196 45.455 0.00 0.00 0.00 2.17
1725 2217 4.439563 GGAAAATCGGAAATTACATGGCGT 60.440 41.667 0.00 0.00 0.00 5.68
1820 2312 5.929992 CCGATACAGACAAGAAAACCACTTA 59.070 40.000 0.00 0.00 0.00 2.24
1821 2313 4.755123 CCGATACAGACAAGAAAACCACTT 59.245 41.667 0.00 0.00 0.00 3.16
1822 2314 4.202326 ACCGATACAGACAAGAAAACCACT 60.202 41.667 0.00 0.00 0.00 4.00
1824 2316 4.345859 ACCGATACAGACAAGAAAACCA 57.654 40.909 0.00 0.00 0.00 3.67
1825 2317 5.684550 AAACCGATACAGACAAGAAAACC 57.315 39.130 0.00 0.00 0.00 3.27
1826 2318 9.148104 AGTATAAACCGATACAGACAAGAAAAC 57.852 33.333 0.00 0.00 35.16 2.43
1870 2362 3.893326 TCATGACGAATGACCTGTGAT 57.107 42.857 0.00 0.00 40.50 3.06
1891 2383 3.949586 TGAATGGTAGGCAATCATCCA 57.050 42.857 0.00 0.00 0.00 3.41
1948 2440 2.709396 CCTAGTGGGGATGGGGGA 59.291 66.667 0.00 0.00 0.00 4.81
1984 2476 9.326413 CACTGAACTTTAGGTATTTATACTGGG 57.674 37.037 0.37 0.00 33.81 4.45
2057 2549 8.752766 TCTTTTTGTGGACTAATAGAACTACG 57.247 34.615 0.00 0.00 0.00 3.51
2157 2650 4.564041 AGTTGTCACATCTGCAAGTCTAG 58.436 43.478 0.00 0.00 33.76 2.43
2214 2714 0.631212 ACCTCCCCCATCAACAATCC 59.369 55.000 0.00 0.00 0.00 3.01
2261 2761 3.506743 TGCAGCCAACCCCAGGAA 61.507 61.111 0.00 0.00 0.00 3.36
2292 2792 4.454678 CTGTTATAGAGCAAGGGCATGAA 58.545 43.478 0.00 0.00 44.61 2.57
2303 2803 6.224584 GTGAGGAATTACCCTGTTATAGAGC 58.775 44.000 0.00 0.00 40.05 4.09
2354 2854 1.353022 GGTGAAAGGGGTGGTGATGTA 59.647 52.381 0.00 0.00 0.00 2.29
2449 2949 2.058057 GTGTAAGCCCAAAATGCAACG 58.942 47.619 0.00 0.00 0.00 4.10
2450 2950 3.104843 TGTGTAAGCCCAAAATGCAAC 57.895 42.857 0.00 0.00 0.00 4.17
2463 2963 8.954950 AGAAGAGATCATGGTAAATGTGTAAG 57.045 34.615 0.00 0.00 0.00 2.34
2474 2974 2.507471 GGGTCCAAGAAGAGATCATGGT 59.493 50.000 0.00 0.00 45.27 3.55
2510 3010 4.635765 GCCACTGAAAATGCACTACTCATA 59.364 41.667 0.00 0.00 0.00 2.15
2596 3096 4.340950 TGGATGTTCCCAAAAAGACAGAAC 59.659 41.667 0.00 0.00 35.03 3.01
2662 3162 5.039333 GCAGGAAAAGTGACATCAATATGC 58.961 41.667 0.00 0.00 36.50 3.14
2665 3165 5.559770 TCAGCAGGAAAAGTGACATCAATA 58.440 37.500 0.00 0.00 0.00 1.90
2696 3196 3.393089 ACACATTGTCAGGTCAGAGAC 57.607 47.619 0.00 0.00 35.37 3.36
2789 3289 7.823745 ACTTTCAGAGGCTTCTTTTTATTCA 57.176 32.000 0.00 0.00 0.00 2.57
2950 3451 8.691797 GGGTAAGCAATAATGTCCAAAAAGATA 58.308 33.333 0.00 0.00 0.00 1.98
3039 3541 7.718334 TCTTTTCTTCTTCTTTTGGACCTTT 57.282 32.000 0.00 0.00 0.00 3.11
3328 3830 2.303022 AGAATTCAGAAACTGCCTCGGA 59.697 45.455 8.44 0.00 0.00 4.55
3364 3866 5.491070 CTGTCAACCATATCAGTCTTCCAA 58.509 41.667 0.00 0.00 0.00 3.53
3428 3930 6.088085 GGCGTTGCAAATTAAGCATATATGAC 59.912 38.462 17.10 7.84 42.33 3.06
3441 3943 0.320596 CCCATGTGGCGTTGCAAATT 60.321 50.000 0.00 0.00 0.00 1.82
3454 3958 6.604171 ACATTATACATCATCACACCCATGT 58.396 36.000 0.00 0.00 40.80 3.21
3479 3984 4.932200 GCATAGGATTTCTAACGAGGATGG 59.068 45.833 0.00 0.00 0.00 3.51
3672 4197 3.988379 ATAATAACAACGCATGCAGGG 57.012 42.857 19.57 8.22 0.00 4.45
3691 4216 9.573133 GCAAGACAGTAGTGCAAAATTAATTAT 57.427 29.630 0.01 0.00 38.19 1.28
3693 4218 7.432869 TGCAAGACAGTAGTGCAAAATTAATT 58.567 30.769 7.96 0.00 44.88 1.40
3694 4219 6.980593 TGCAAGACAGTAGTGCAAAATTAAT 58.019 32.000 7.96 0.00 44.88 1.40
3703 4228 5.113502 AGAAAAATGCAAGACAGTAGTGC 57.886 39.130 0.00 1.59 38.78 4.40
3704 4229 6.963796 AGAAGAAAAATGCAAGACAGTAGTG 58.036 36.000 0.00 0.00 0.00 2.74
3705 4230 7.573968 AAGAAGAAAAATGCAAGACAGTAGT 57.426 32.000 0.00 0.00 0.00 2.73
3706 4231 7.917505 ACAAAGAAGAAAAATGCAAGACAGTAG 59.082 33.333 0.00 0.00 0.00 2.57
3707 4232 7.771183 ACAAAGAAGAAAAATGCAAGACAGTA 58.229 30.769 0.00 0.00 0.00 2.74
3708 4233 6.633856 ACAAAGAAGAAAAATGCAAGACAGT 58.366 32.000 0.00 0.00 0.00 3.55
3709 4234 8.807667 ATACAAAGAAGAAAAATGCAAGACAG 57.192 30.769 0.00 0.00 0.00 3.51
3736 4261 9.264719 GGACAAAATCTCTGAATTGACAAATTT 57.735 29.630 0.00 0.00 36.10 1.82
3737 4262 7.596248 CGGACAAAATCTCTGAATTGACAAATT 59.404 33.333 0.00 0.00 38.74 1.82
3739 4264 6.039270 ACGGACAAAATCTCTGAATTGACAAA 59.961 34.615 0.00 0.00 0.00 2.83
3742 4267 5.613358 ACGGACAAAATCTCTGAATTGAC 57.387 39.130 0.00 0.00 0.00 3.18
3743 4268 5.351465 GCTACGGACAAAATCTCTGAATTGA 59.649 40.000 0.00 0.00 0.00 2.57
3744 4269 5.352569 AGCTACGGACAAAATCTCTGAATTG 59.647 40.000 0.00 0.00 0.00 2.32
3762 4287 8.635877 AATATAAGAGTCTGAAACAAGCTACG 57.364 34.615 0.00 0.00 0.00 3.51
3922 4449 6.566079 TCACTAGATCCATCCTGAAATGTT 57.434 37.500 0.00 0.00 0.00 2.71
3929 4456 6.662865 ACTTGTATCACTAGATCCATCCTG 57.337 41.667 0.00 0.00 35.67 3.86
3997 4527 4.108699 TCAAAAGTCAAACTTGTGCCTG 57.891 40.909 5.32 0.00 41.96 4.85
3998 4528 4.799564 TTCAAAAGTCAAACTTGTGCCT 57.200 36.364 5.32 0.00 41.96 4.75
3999 4529 5.854431 TTTTCAAAAGTCAAACTTGTGCC 57.146 34.783 5.32 0.00 41.96 5.01
4025 4589 4.555313 CGTTCCGCGATATAAGGTGTCTTA 60.555 45.833 8.23 0.00 44.77 2.10
4040 4604 1.168407 TATACTCCCTCCGTTCCGCG 61.168 60.000 0.00 0.00 40.95 6.46
4155 4798 5.822132 TCATGGTCAATGGGAAACAAAAT 57.178 34.783 0.00 0.00 36.86 1.82
4228 4871 2.409975 GGTTAGCGACTTACACTTGCA 58.590 47.619 0.00 0.00 0.00 4.08
4235 4878 3.494045 AACCTACGGTTAGCGACTTAC 57.506 47.619 11.70 0.00 44.94 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.