Multiple sequence alignment - TraesCS6A01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G180500 chr6A 100.000 4765 0 0 1 4765 204735420 204730656 0.000000e+00 8800.0
1 TraesCS6A01G180500 chr6A 83.849 291 37 8 4450 4732 592431882 592431594 7.860000e-68 268.0
2 TraesCS6A01G180500 chr6D 96.614 2983 79 7 1329 4293 143662493 143665471 0.000000e+00 4929.0
3 TraesCS6A01G180500 chr6D 92.868 673 26 8 661 1331 143661752 143662404 0.000000e+00 957.0
4 TraesCS6A01G180500 chr6D 89.785 186 16 3 4293 4478 143673593 143673775 7.970000e-58 235.0
5 TraesCS6A01G180500 chr6D 83.000 100 9 7 4317 4413 152241170 152241264 3.060000e-12 84.2
6 TraesCS6A01G180500 chr6D 82.105 95 10 6 4321 4413 152246570 152246659 1.840000e-09 75.0
7 TraesCS6A01G180500 chr6B 96.909 1650 36 2 2249 3897 255981352 255982987 0.000000e+00 2750.0
8 TraesCS6A01G180500 chr6B 97.139 664 17 2 1 662 714487182 714486519 0.000000e+00 1120.0
9 TraesCS6A01G180500 chr6B 91.818 440 16 6 3893 4314 255997355 255997792 3.170000e-166 595.0
10 TraesCS6A01G180500 chr6B 84.192 291 34 9 4451 4732 120821258 120821545 6.080000e-69 272.0
11 TraesCS6A01G180500 chr6B 85.824 261 7 5 715 963 255981111 255981353 2.850000e-62 250.0
12 TraesCS6A01G180500 chr6B 91.358 81 6 1 4302 4382 255997802 255997881 5.040000e-20 110.0
13 TraesCS6A01G180500 chr3B 97.440 664 15 2 1 662 788948741 788949404 0.000000e+00 1131.0
14 TraesCS6A01G180500 chr3B 84.722 288 36 6 4452 4732 749488632 749488918 1.010000e-71 281.0
15 TraesCS6A01G180500 chr2B 97.440 664 15 2 1 662 216945575 216944912 0.000000e+00 1131.0
16 TraesCS6A01G180500 chr7A 97.028 673 16 4 1 669 260315698 260315026 0.000000e+00 1129.0
17 TraesCS6A01G180500 chr7A 96.837 664 19 2 1 662 672321558 672322221 0.000000e+00 1109.0
18 TraesCS6A01G180500 chr1B 97.139 664 17 2 1 662 431182570 431181907 0.000000e+00 1120.0
19 TraesCS6A01G180500 chr2A 96.837 664 19 2 1 662 93985260 93984597 0.000000e+00 1109.0
20 TraesCS6A01G180500 chr2A 82.105 95 12 5 4321 4413 13412454 13412545 5.110000e-10 76.8
21 TraesCS6A01G180500 chr7B 96.837 664 18 3 1 662 583379890 583380552 0.000000e+00 1107.0
22 TraesCS6A01G180500 chr3A 96.818 660 19 2 1 658 389505059 389504400 0.000000e+00 1101.0
23 TraesCS6A01G180500 chr4D 85.185 297 33 8 4441 4729 12695881 12696174 1.300000e-75 294.0
24 TraesCS6A01G180500 chr4D 84.192 291 35 8 4450 4731 504283283 504283571 6.080000e-69 272.0
25 TraesCS6A01G180500 chr5D 84.669 287 34 7 4450 4728 464614799 464614515 1.310000e-70 278.0
26 TraesCS6A01G180500 chr5D 84.083 289 38 5 4451 4732 520111705 520111418 6.080000e-69 272.0
27 TraesCS6A01G180500 chr5A 84.300 293 34 9 4449 4732 563420314 563420025 4.700000e-70 276.0
28 TraesCS6A01G180500 chr2D 84.300 293 34 9 4449 4732 632777323 632777034 4.700000e-70 276.0
29 TraesCS6A01G180500 chrUn 82.105 95 11 5 4321 4413 81292766 81292676 5.110000e-10 76.8
30 TraesCS6A01G180500 chr7D 81.915 94 13 4 4321 4413 523387975 523387885 5.110000e-10 76.8
31 TraesCS6A01G180500 chr4A 82.474 97 8 7 4321 4413 658103010 658102919 5.110000e-10 76.8
32 TraesCS6A01G180500 chr4A 100.000 29 0 0 1028 1056 584522471 584522499 2.000000e-03 54.7
33 TraesCS6A01G180500 chr1D 81.633 98 11 6 4319 4413 139136306 139136213 1.840000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G180500 chr6A 204730656 204735420 4764 True 8800.0 8800 100.0000 1 4765 1 chr6A.!!$R1 4764
1 TraesCS6A01G180500 chr6D 143661752 143665471 3719 False 2943.0 4929 94.7410 661 4293 2 chr6D.!!$F4 3632
2 TraesCS6A01G180500 chr6B 255981111 255982987 1876 False 1500.0 2750 91.3665 715 3897 2 chr6B.!!$F2 3182
3 TraesCS6A01G180500 chr6B 714486519 714487182 663 True 1120.0 1120 97.1390 1 662 1 chr6B.!!$R1 661
4 TraesCS6A01G180500 chr6B 255997355 255997881 526 False 352.5 595 91.5880 3893 4382 2 chr6B.!!$F3 489
5 TraesCS6A01G180500 chr3B 788948741 788949404 663 False 1131.0 1131 97.4400 1 662 1 chr3B.!!$F2 661
6 TraesCS6A01G180500 chr2B 216944912 216945575 663 True 1131.0 1131 97.4400 1 662 1 chr2B.!!$R1 661
7 TraesCS6A01G180500 chr7A 260315026 260315698 672 True 1129.0 1129 97.0280 1 669 1 chr7A.!!$R1 668
8 TraesCS6A01G180500 chr7A 672321558 672322221 663 False 1109.0 1109 96.8370 1 662 1 chr7A.!!$F1 661
9 TraesCS6A01G180500 chr1B 431181907 431182570 663 True 1120.0 1120 97.1390 1 662 1 chr1B.!!$R1 661
10 TraesCS6A01G180500 chr2A 93984597 93985260 663 True 1109.0 1109 96.8370 1 662 1 chr2A.!!$R1 661
11 TraesCS6A01G180500 chr7B 583379890 583380552 662 False 1107.0 1107 96.8370 1 662 1 chr7B.!!$F1 661
12 TraesCS6A01G180500 chr3A 389504400 389505059 659 True 1101.0 1101 96.8180 1 658 1 chr3A.!!$R1 657


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 928 0.178987 TCCCTCTGCCTCGTATCTCC 60.179 60.000 0.00 0.0 0.00 3.71 F
2127 2235 0.603569 GAACGAGGAAGCAGACCTGA 59.396 55.000 0.47 0.0 37.93 3.86 F
2456 2564 3.193263 AGATGCTGTACGCTCTGAATTG 58.807 45.455 10.27 0.0 40.11 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 2738 1.068434 TCATGACAACGAGACTGTGCA 59.932 47.619 0.00 0.0 0.00 4.57 R
3204 3312 0.251653 TTGGACTCGAGGGCTGTACT 60.252 55.000 18.41 0.0 0.00 2.73 R
4387 4535 0.106469 TTTAGCACCACCACTTGCCA 60.106 50.000 0.00 0.0 39.75 4.92 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.091718 TGTAGTCTAGTTGCACACACATTA 57.908 37.500 0.00 0.00 0.00 1.90
85 86 5.863397 CACACATTAATGTTTAGTTGGCAGG 59.137 40.000 18.50 5.60 39.39 4.85
235 236 5.900425 AGTTGCACACACATTGATGTTTAA 58.100 33.333 0.00 0.00 39.39 1.52
323 325 4.826733 ACACATTGATGTTTAGTTGGCAGA 59.173 37.500 0.00 0.00 39.39 4.26
377 379 5.234543 GGGATATAGTTTTGAAGAGCACGTC 59.765 44.000 0.00 0.00 0.00 4.34
504 506 1.890876 TTCCAACTGATTGTGACCGG 58.109 50.000 0.00 0.00 33.60 5.28
572 574 9.786105 CAAAAATTACACACATGCATGTCTATA 57.214 29.630 29.23 17.43 39.39 1.31
662 665 1.427592 GCCGCTACGTAGACTCGTCT 61.428 60.000 26.53 4.81 43.12 4.18
692 695 4.736473 AGGCAACCAAAGTGTACCTTAAT 58.264 39.130 0.00 0.00 31.05 1.40
695 698 6.099125 AGGCAACCAAAGTGTACCTTAATTTT 59.901 34.615 0.00 0.00 31.05 1.82
696 699 6.764085 GGCAACCAAAGTGTACCTTAATTTTT 59.236 34.615 0.00 0.00 31.48 1.94
770 773 3.394719 GAGTGAACGGAGAAGAAAAGCT 58.605 45.455 0.00 0.00 0.00 3.74
777 780 4.308265 ACGGAGAAGAAAAGCTGTAGAAC 58.692 43.478 0.00 0.00 0.00 3.01
778 781 4.202223 ACGGAGAAGAAAAGCTGTAGAACA 60.202 41.667 0.00 0.00 0.00 3.18
791 794 5.847670 CTGTAGAACAGTAGAAGGCAAAC 57.152 43.478 0.00 0.00 41.19 2.93
792 795 4.304110 TGTAGAACAGTAGAAGGCAAACG 58.696 43.478 0.00 0.00 0.00 3.60
793 796 3.746045 AGAACAGTAGAAGGCAAACGA 57.254 42.857 0.00 0.00 0.00 3.85
794 797 3.654414 AGAACAGTAGAAGGCAAACGAG 58.346 45.455 0.00 0.00 0.00 4.18
795 798 3.069729 AGAACAGTAGAAGGCAAACGAGT 59.930 43.478 0.00 0.00 0.00 4.18
825 828 0.248054 GCTCTCTCTCACGCTTCTCG 60.248 60.000 0.00 0.00 45.38 4.04
911 928 0.178987 TCCCTCTGCCTCGTATCTCC 60.179 60.000 0.00 0.00 0.00 3.71
1171 1188 1.672737 CGCTGCTCACTGTTACATGGA 60.673 52.381 0.00 0.00 0.00 3.41
1233 1250 6.878923 CCACATGTGTTTGAAGTAGAAGGATA 59.121 38.462 23.79 0.00 0.00 2.59
1241 1258 8.041323 TGTTTGAAGTAGAAGGATACCAGATTC 58.959 37.037 0.00 0.00 37.17 2.52
1306 1323 9.726438 TTTAAAAACTTTTCTGGAATTGGTTCA 57.274 25.926 0.00 0.00 36.01 3.18
1345 1453 7.022979 CAGTAAACTGCGATCAAATTTCATCA 58.977 34.615 2.85 0.00 37.15 3.07
1366 1474 9.987272 TCATCAGTTATGATACTTCACCTTATG 57.013 33.333 0.00 0.00 44.58 1.90
1376 1484 5.078411 ACTTCACCTTATGTAGCAGTGAG 57.922 43.478 0.00 0.00 38.58 3.51
1400 1508 4.585955 TCTGAAGTTCAGTGTACTGTCC 57.414 45.455 27.83 4.25 44.58 4.02
1501 1609 6.184789 GGTTGTGACCATTTCCTTATCCTAA 58.815 40.000 0.00 0.00 45.77 2.69
1570 1678 2.430465 GCAGAAGCTGAGTTTCATGGA 58.570 47.619 11.58 0.00 37.91 3.41
1576 1684 2.097825 GCTGAGTTTCATGGAGGCATT 58.902 47.619 0.00 0.00 0.00 3.56
1623 1731 3.926527 TCCTCGTTTGATCAAATCAGTCG 59.073 43.478 23.05 19.82 40.94 4.18
1706 1814 3.017323 CTGGAGCGGCTATTTGCG 58.983 61.111 0.60 0.00 44.05 4.85
1708 1816 1.493950 CTGGAGCGGCTATTTGCGAG 61.494 60.000 0.60 0.00 44.05 5.03
1998 2106 0.997932 GCGAGTGAAGCAGATCAGTG 59.002 55.000 0.00 0.00 33.17 3.66
2042 2150 2.636830 CAAGACAGGACTATTGCCAGG 58.363 52.381 0.00 0.00 0.00 4.45
2071 2179 4.517075 AGCTTTGCTTTCTCAGAAGGTAAC 59.483 41.667 0.00 0.00 33.89 2.50
2120 2228 3.131396 GTTCAAGAAGAACGAGGAAGCA 58.869 45.455 0.00 0.00 46.36 3.91
2127 2235 0.603569 GAACGAGGAAGCAGACCTGA 59.396 55.000 0.47 0.00 37.93 3.86
2153 2261 4.561530 CGTTCAGAGATCAGGTCCAAAGAA 60.562 45.833 0.00 0.00 0.00 2.52
2154 2262 5.308825 GTTCAGAGATCAGGTCCAAAGAAA 58.691 41.667 0.00 0.00 0.00 2.52
2158 2266 4.042684 AGAGATCAGGTCCAAAGAAAAGCT 59.957 41.667 0.00 0.00 0.00 3.74
2456 2564 3.193263 AGATGCTGTACGCTCTGAATTG 58.807 45.455 10.27 0.00 40.11 2.32
2630 2738 4.384647 GGGAAGACACAGGAGCTCAATTAT 60.385 45.833 17.19 0.00 0.00 1.28
2670 2778 8.988934 GTCATGAACTTGAATCACAGTTACTTA 58.011 33.333 0.00 1.51 0.00 2.24
2711 2819 4.922719 AGTCTCTAGAAGCCGAATTAACG 58.077 43.478 0.00 0.00 0.00 3.18
3204 3312 6.099159 TGGATGATGAAATTTCAAGCACAA 57.901 33.333 23.91 11.46 41.13 3.33
3227 3335 1.906574 ACAGCCCTCGAGTCCAATTTA 59.093 47.619 12.31 0.00 0.00 1.40
3457 3565 1.342074 TCCAGTGAGACAACAGAGGG 58.658 55.000 0.00 0.00 0.00 4.30
3461 3569 1.837051 TGAGACAACAGAGGGCGGT 60.837 57.895 0.00 0.00 0.00 5.68
3482 3590 4.021544 GGTATTGTAGGAGAGATGGAGCTG 60.022 50.000 0.00 0.00 0.00 4.24
3500 3608 2.165845 GCTGCCAGAGCTTCAAATTGAT 59.834 45.455 0.00 0.00 45.21 2.57
3580 3688 6.053005 TGACTAAGGATTTCTTCAAACACGT 58.947 36.000 0.00 0.00 36.93 4.49
3600 3708 5.580691 CACGTCAAAGCTGATTCTGGTATTA 59.419 40.000 0.00 0.00 33.05 0.98
3853 3961 9.476202 CAGAGTAGAGATATACCAGATAGATCG 57.524 40.741 0.00 0.00 36.73 3.69
3911 4019 5.666718 AGGATGAGATCTTCTCTGGTTGATT 59.333 40.000 0.00 0.00 43.73 2.57
3917 4025 6.537355 AGATCTTCTCTGGTTGATTTCACAA 58.463 36.000 0.00 0.00 31.12 3.33
3980 4088 3.370315 GGTCATCTGATCCTTTGTGCTCT 60.370 47.826 0.00 0.00 0.00 4.09
3992 4100 6.272318 TCCTTTGTGCTCTTTTTGTAATGTG 58.728 36.000 0.00 0.00 0.00 3.21
4031 4139 5.241506 TCAGATCTTTGTTCAATGTGTTCCC 59.758 40.000 0.00 0.00 0.00 3.97
4032 4140 4.524328 AGATCTTTGTTCAATGTGTTCCCC 59.476 41.667 0.00 0.00 0.00 4.81
4104 4212 4.870426 CGTCATGCCAAAACTACTACTGAT 59.130 41.667 0.00 0.00 0.00 2.90
4147 4255 2.355009 GCAAAGTTGGTGCAGCGG 60.355 61.111 11.91 0.00 41.80 5.52
4229 4354 6.490040 AGATGGCTATCAAGTACTCTCTCTTC 59.510 42.308 13.04 0.00 35.70 2.87
4300 4426 5.834239 ACTCCGTAGTTCAAATTTACACG 57.166 39.130 0.00 0.65 29.00 4.49
4332 4480 7.094508 TGAGCATCAAACTGTTAGAAACAAA 57.905 32.000 0.00 0.00 45.97 2.83
4352 4500 2.499685 GGCCTAGCCCACGTACAG 59.500 66.667 0.00 0.00 44.06 2.74
4373 4521 9.813080 GTACAGTGTCTGAAATTTCAAATAGAC 57.187 33.333 20.82 21.63 36.64 2.59
4374 4522 7.576236 ACAGTGTCTGAAATTTCAAATAGACG 58.424 34.615 20.82 13.45 36.64 4.18
4382 4530 7.831753 TGAAATTTCAAATAGACGCCCATAAA 58.168 30.769 18.45 0.00 33.55 1.40
4383 4531 7.757624 TGAAATTTCAAATAGACGCCCATAAAC 59.242 33.333 18.45 0.00 33.55 2.01
4384 4532 6.767524 ATTTCAAATAGACGCCCATAAACA 57.232 33.333 0.00 0.00 0.00 2.83
4385 4533 6.576662 TTTCAAATAGACGCCCATAAACAA 57.423 33.333 0.00 0.00 0.00 2.83
4386 4534 6.576662 TTCAAATAGACGCCCATAAACAAA 57.423 33.333 0.00 0.00 0.00 2.83
4387 4535 6.767524 TCAAATAGACGCCCATAAACAAAT 57.232 33.333 0.00 0.00 0.00 2.32
4388 4536 6.559810 TCAAATAGACGCCCATAAACAAATG 58.440 36.000 0.00 0.00 0.00 2.32
4389 4537 5.514274 AATAGACGCCCATAAACAAATGG 57.486 39.130 0.00 0.00 45.20 3.16
4390 4538 1.476488 AGACGCCCATAAACAAATGGC 59.524 47.619 0.00 0.00 44.40 4.40
4391 4539 1.203523 GACGCCCATAAACAAATGGCA 59.796 47.619 0.00 0.00 44.40 4.92
4392 4540 1.620819 ACGCCCATAAACAAATGGCAA 59.379 42.857 0.00 0.00 44.40 4.52
4393 4541 2.270047 CGCCCATAAACAAATGGCAAG 58.730 47.619 0.00 0.00 44.40 4.01
4394 4542 2.353605 CGCCCATAAACAAATGGCAAGT 60.354 45.455 0.00 0.00 44.40 3.16
4395 4543 3.002102 GCCCATAAACAAATGGCAAGTG 58.998 45.455 0.00 0.00 44.40 3.16
4396 4544 3.598299 CCCATAAACAAATGGCAAGTGG 58.402 45.455 0.00 0.00 44.40 4.00
4397 4545 3.007831 CCCATAAACAAATGGCAAGTGGT 59.992 43.478 0.00 0.00 44.40 4.16
4398 4546 3.995705 CCATAAACAAATGGCAAGTGGTG 59.004 43.478 0.00 0.00 40.07 4.17
4399 4547 2.618442 AAACAAATGGCAAGTGGTGG 57.382 45.000 0.00 0.00 0.00 4.61
4400 4548 1.494960 AACAAATGGCAAGTGGTGGT 58.505 45.000 0.00 0.00 0.00 4.16
4401 4549 0.752054 ACAAATGGCAAGTGGTGGTG 59.248 50.000 0.00 0.00 0.00 4.17
4402 4550 0.600782 CAAATGGCAAGTGGTGGTGC 60.601 55.000 0.00 0.00 40.14 5.01
4403 4551 0.760189 AAATGGCAAGTGGTGGTGCT 60.760 50.000 0.00 0.00 40.70 4.40
4404 4552 0.112218 AATGGCAAGTGGTGGTGCTA 59.888 50.000 0.00 0.00 40.70 3.49
4405 4553 0.112218 ATGGCAAGTGGTGGTGCTAA 59.888 50.000 0.00 0.00 40.70 3.09
4406 4554 0.106469 TGGCAAGTGGTGGTGCTAAA 60.106 50.000 0.00 0.00 40.70 1.85
4407 4555 0.598065 GGCAAGTGGTGGTGCTAAAG 59.402 55.000 0.00 0.00 40.70 1.85
4408 4556 1.318576 GCAAGTGGTGGTGCTAAAGT 58.681 50.000 0.00 0.00 37.78 2.66
4409 4557 1.681264 GCAAGTGGTGGTGCTAAAGTT 59.319 47.619 0.00 0.00 37.78 2.66
4410 4558 2.100749 GCAAGTGGTGGTGCTAAAGTTT 59.899 45.455 0.00 0.00 37.78 2.66
4411 4559 3.316868 GCAAGTGGTGGTGCTAAAGTTTA 59.683 43.478 0.00 0.00 37.78 2.01
4412 4560 4.556699 GCAAGTGGTGGTGCTAAAGTTTAG 60.557 45.833 16.87 16.87 37.78 1.85
4413 4561 4.699925 AGTGGTGGTGCTAAAGTTTAGA 57.300 40.909 23.89 8.37 0.00 2.10
4414 4562 4.642429 AGTGGTGGTGCTAAAGTTTAGAG 58.358 43.478 23.89 4.04 0.00 2.43
4415 4563 3.751698 GTGGTGGTGCTAAAGTTTAGAGG 59.248 47.826 23.89 1.78 0.00 3.69
4416 4564 3.649023 TGGTGGTGCTAAAGTTTAGAGGA 59.351 43.478 23.89 1.21 0.00 3.71
4417 4565 4.103469 TGGTGGTGCTAAAGTTTAGAGGAA 59.897 41.667 23.89 5.79 0.00 3.36
4418 4566 4.695928 GGTGGTGCTAAAGTTTAGAGGAAG 59.304 45.833 23.89 1.88 0.00 3.46
4419 4567 5.306394 GTGGTGCTAAAGTTTAGAGGAAGT 58.694 41.667 23.89 0.00 0.00 3.01
4420 4568 5.179555 GTGGTGCTAAAGTTTAGAGGAAGTG 59.820 44.000 23.89 0.00 0.00 3.16
4421 4569 5.163237 TGGTGCTAAAGTTTAGAGGAAGTGT 60.163 40.000 23.89 0.00 0.00 3.55
4422 4570 5.763698 GGTGCTAAAGTTTAGAGGAAGTGTT 59.236 40.000 23.89 0.00 0.00 3.32
4423 4571 6.262496 GGTGCTAAAGTTTAGAGGAAGTGTTT 59.738 38.462 23.89 0.00 0.00 2.83
4424 4572 7.353497 GTGCTAAAGTTTAGAGGAAGTGTTTC 58.647 38.462 23.89 4.61 0.00 2.78
4425 4573 7.012044 GTGCTAAAGTTTAGAGGAAGTGTTTCA 59.988 37.037 23.89 6.89 34.90 2.69
4426 4574 7.012044 TGCTAAAGTTTAGAGGAAGTGTTTCAC 59.988 37.037 23.89 4.06 34.90 3.18
4427 4575 6.694877 AAAGTTTAGAGGAAGTGTTTCACC 57.305 37.500 0.00 0.00 34.49 4.02
4428 4576 5.367945 AGTTTAGAGGAAGTGTTTCACCA 57.632 39.130 0.00 0.00 34.49 4.17
4429 4577 5.123936 AGTTTAGAGGAAGTGTTTCACCAC 58.876 41.667 0.00 0.00 34.49 4.16
4441 4589 7.266905 AGTGTTTCACCACTTTATATAGGGT 57.733 36.000 0.00 0.00 42.99 4.34
4443 4591 6.882678 GTGTTTCACCACTTTATATAGGGTGT 59.117 38.462 20.01 6.02 46.96 4.16
4444 4592 7.392393 GTGTTTCACCACTTTATATAGGGTGTT 59.608 37.037 20.01 4.20 46.96 3.32
4445 4593 7.608761 TGTTTCACCACTTTATATAGGGTGTTC 59.391 37.037 20.01 14.93 46.96 3.18
4446 4594 7.504926 TTCACCACTTTATATAGGGTGTTCT 57.495 36.000 20.01 0.00 46.96 3.01
4447 4595 7.120923 TCACCACTTTATATAGGGTGTTCTC 57.879 40.000 20.01 0.00 46.96 2.87
4448 4596 6.901300 TCACCACTTTATATAGGGTGTTCTCT 59.099 38.462 20.01 0.00 46.96 3.10
4449 4597 7.402071 TCACCACTTTATATAGGGTGTTCTCTT 59.598 37.037 20.01 0.00 46.96 2.85
4450 4598 8.047310 CACCACTTTATATAGGGTGTTCTCTTT 58.953 37.037 16.02 0.00 43.08 2.52
4451 4599 8.612145 ACCACTTTATATAGGGTGTTCTCTTTT 58.388 33.333 12.81 0.00 0.00 2.27
4452 4600 9.462606 CCACTTTATATAGGGTGTTCTCTTTTT 57.537 33.333 12.81 0.00 0.00 1.94
4482 4630 7.020914 ACGAGAAATTTCCAATCTATTCAGC 57.979 36.000 14.61 0.00 0.00 4.26
4483 4631 6.825721 ACGAGAAATTTCCAATCTATTCAGCT 59.174 34.615 14.61 0.00 0.00 4.24
4484 4632 7.337942 ACGAGAAATTTCCAATCTATTCAGCTT 59.662 33.333 14.61 0.00 0.00 3.74
4485 4633 8.186821 CGAGAAATTTCCAATCTATTCAGCTTT 58.813 33.333 14.61 0.00 0.00 3.51
4493 4641 9.631257 TTCCAATCTATTCAGCTTTAATCATGA 57.369 29.630 0.00 0.00 0.00 3.07
4494 4642 9.060347 TCCAATCTATTCAGCTTTAATCATGAC 57.940 33.333 0.00 0.00 0.00 3.06
4495 4643 8.843262 CCAATCTATTCAGCTTTAATCATGACA 58.157 33.333 0.00 0.00 0.00 3.58
4496 4644 9.880064 CAATCTATTCAGCTTTAATCATGACAG 57.120 33.333 0.00 0.00 0.00 3.51
4497 4645 9.624373 AATCTATTCAGCTTTAATCATGACAGT 57.376 29.630 0.00 0.00 0.00 3.55
4499 4647 9.534565 TCTATTCAGCTTTAATCATGACAGTAC 57.465 33.333 0.00 0.00 0.00 2.73
4500 4648 9.317936 CTATTCAGCTTTAATCATGACAGTACA 57.682 33.333 0.00 0.00 0.00 2.90
4501 4649 7.977789 TTCAGCTTTAATCATGACAGTACAA 57.022 32.000 0.00 0.00 0.00 2.41
4502 4650 7.364522 TCAGCTTTAATCATGACAGTACAAC 57.635 36.000 0.00 0.00 0.00 3.32
4503 4651 6.934083 TCAGCTTTAATCATGACAGTACAACA 59.066 34.615 0.00 0.00 0.00 3.33
4504 4652 7.443879 TCAGCTTTAATCATGACAGTACAACAA 59.556 33.333 0.00 0.00 0.00 2.83
4505 4653 8.075574 CAGCTTTAATCATGACAGTACAACAAA 58.924 33.333 0.00 0.00 0.00 2.83
4506 4654 8.076178 AGCTTTAATCATGACAGTACAACAAAC 58.924 33.333 0.00 0.00 0.00 2.93
4507 4655 7.860373 GCTTTAATCATGACAGTACAACAAACA 59.140 33.333 0.00 0.00 0.00 2.83
4508 4656 9.169468 CTTTAATCATGACAGTACAACAAACAC 57.831 33.333 0.00 0.00 0.00 3.32
4509 4657 5.689383 ATCATGACAGTACAACAAACACC 57.311 39.130 0.00 0.00 0.00 4.16
4510 4658 4.518249 TCATGACAGTACAACAAACACCA 58.482 39.130 0.00 0.00 0.00 4.17
4511 4659 4.574421 TCATGACAGTACAACAAACACCAG 59.426 41.667 0.00 0.00 0.00 4.00
4512 4660 4.209307 TGACAGTACAACAAACACCAGA 57.791 40.909 0.00 0.00 0.00 3.86
4513 4661 4.580868 TGACAGTACAACAAACACCAGAA 58.419 39.130 0.00 0.00 0.00 3.02
4514 4662 5.004448 TGACAGTACAACAAACACCAGAAA 58.996 37.500 0.00 0.00 0.00 2.52
4515 4663 5.650266 TGACAGTACAACAAACACCAGAAAT 59.350 36.000 0.00 0.00 0.00 2.17
4516 4664 6.824196 TGACAGTACAACAAACACCAGAAATA 59.176 34.615 0.00 0.00 0.00 1.40
4517 4665 7.337184 TGACAGTACAACAAACACCAGAAATAA 59.663 33.333 0.00 0.00 0.00 1.40
4518 4666 8.232913 ACAGTACAACAAACACCAGAAATAAT 57.767 30.769 0.00 0.00 0.00 1.28
4519 4667 9.344772 ACAGTACAACAAACACCAGAAATAATA 57.655 29.630 0.00 0.00 0.00 0.98
4545 4693 7.931578 AAATTACATCCAGATTCGTAAACCA 57.068 32.000 0.00 0.00 0.00 3.67
4546 4694 8.519799 AAATTACATCCAGATTCGTAAACCAT 57.480 30.769 0.00 0.00 0.00 3.55
4547 4695 7.730364 ATTACATCCAGATTCGTAAACCATC 57.270 36.000 0.00 0.00 0.00 3.51
4548 4696 5.359194 ACATCCAGATTCGTAAACCATCT 57.641 39.130 0.00 0.00 0.00 2.90
4549 4697 6.479972 ACATCCAGATTCGTAAACCATCTA 57.520 37.500 0.00 0.00 0.00 1.98
4550 4698 6.516718 ACATCCAGATTCGTAAACCATCTAG 58.483 40.000 0.00 0.00 0.00 2.43
4551 4699 4.945246 TCCAGATTCGTAAACCATCTAGC 58.055 43.478 0.00 0.00 0.00 3.42
4552 4700 3.736252 CCAGATTCGTAAACCATCTAGCG 59.264 47.826 0.00 0.00 0.00 4.26
4553 4701 4.499188 CCAGATTCGTAAACCATCTAGCGA 60.499 45.833 0.00 0.00 0.00 4.93
4554 4702 5.223382 CAGATTCGTAAACCATCTAGCGAT 58.777 41.667 0.00 0.00 0.00 4.58
4555 4703 5.117745 CAGATTCGTAAACCATCTAGCGATG 59.882 44.000 0.00 0.00 45.31 3.84
4566 4714 3.777465 TCTAGCGATGACTACAACCAC 57.223 47.619 0.00 0.00 0.00 4.16
4567 4715 3.353557 TCTAGCGATGACTACAACCACT 58.646 45.455 0.00 0.00 0.00 4.00
4568 4716 2.370281 AGCGATGACTACAACCACTG 57.630 50.000 0.00 0.00 0.00 3.66
4569 4717 1.893137 AGCGATGACTACAACCACTGA 59.107 47.619 0.00 0.00 0.00 3.41
4570 4718 2.299013 AGCGATGACTACAACCACTGAA 59.701 45.455 0.00 0.00 0.00 3.02
4571 4719 2.668457 GCGATGACTACAACCACTGAAG 59.332 50.000 0.00 0.00 0.00 3.02
4572 4720 2.668457 CGATGACTACAACCACTGAAGC 59.332 50.000 0.00 0.00 0.00 3.86
4573 4721 2.148916 TGACTACAACCACTGAAGCG 57.851 50.000 0.00 0.00 0.00 4.68
4574 4722 1.684450 TGACTACAACCACTGAAGCGA 59.316 47.619 0.00 0.00 0.00 4.93
4575 4723 2.101750 TGACTACAACCACTGAAGCGAA 59.898 45.455 0.00 0.00 0.00 4.70
4576 4724 3.244078 TGACTACAACCACTGAAGCGAAT 60.244 43.478 0.00 0.00 0.00 3.34
4577 4725 3.326747 ACTACAACCACTGAAGCGAATC 58.673 45.455 0.00 0.00 0.00 2.52
4578 4726 1.148310 ACAACCACTGAAGCGAATCG 58.852 50.000 0.00 0.00 0.00 3.34
4579 4727 1.270094 ACAACCACTGAAGCGAATCGA 60.270 47.619 6.91 0.00 0.00 3.59
4580 4728 1.798223 CAACCACTGAAGCGAATCGAA 59.202 47.619 6.91 0.00 0.00 3.71
4581 4729 1.714794 ACCACTGAAGCGAATCGAAG 58.285 50.000 6.91 0.03 0.00 3.79
4582 4730 1.002366 CCACTGAAGCGAATCGAAGG 58.998 55.000 6.91 0.00 0.00 3.46
4583 4731 1.404181 CCACTGAAGCGAATCGAAGGA 60.404 52.381 6.91 0.00 0.00 3.36
4584 4732 1.923204 CACTGAAGCGAATCGAAGGAG 59.077 52.381 6.91 0.00 0.00 3.69
4585 4733 0.926846 CTGAAGCGAATCGAAGGAGC 59.073 55.000 6.91 0.00 0.00 4.70
4586 4734 0.802222 TGAAGCGAATCGAAGGAGCG 60.802 55.000 6.91 0.00 0.00 5.03
4587 4735 2.083599 GAAGCGAATCGAAGGAGCGC 62.084 60.000 6.91 0.00 44.97 5.92
4588 4736 3.631127 GCGAATCGAAGGAGCGCC 61.631 66.667 6.91 0.00 41.33 6.53
4589 4737 3.323136 CGAATCGAAGGAGCGCCG 61.323 66.667 2.29 0.00 39.96 6.46
4590 4738 3.631127 GAATCGAAGGAGCGCCGC 61.631 66.667 2.29 0.00 39.96 6.53
4608 4756 3.917760 CGCCATCGTCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
4609 4757 3.917760 GCCATCGTCCCTCCCTCG 61.918 72.222 0.00 0.00 0.00 4.63
4610 4758 3.917760 CCATCGTCCCTCCCTCGC 61.918 72.222 0.00 0.00 0.00 5.03
4611 4759 3.147595 CATCGTCCCTCCCTCGCA 61.148 66.667 0.00 0.00 0.00 5.10
4612 4760 2.835431 ATCGTCCCTCCCTCGCAG 60.835 66.667 0.00 0.00 0.00 5.18
4628 4776 2.856000 AGGAGCCCTGGCACAACT 60.856 61.111 11.38 0.00 44.88 3.16
4629 4777 2.116125 GGAGCCCTGGCACAACTT 59.884 61.111 11.38 0.00 44.88 2.66
4630 4778 2.270986 GGAGCCCTGGCACAACTTG 61.271 63.158 11.38 0.00 44.88 3.16
4631 4779 1.529244 GAGCCCTGGCACAACTTGT 60.529 57.895 11.38 0.00 44.88 3.16
4632 4780 0.250727 GAGCCCTGGCACAACTTGTA 60.251 55.000 11.38 0.00 44.88 2.41
4633 4781 0.250901 AGCCCTGGCACAACTTGTAG 60.251 55.000 11.38 0.00 44.88 2.74
4634 4782 0.250727 GCCCTGGCACAACTTGTAGA 60.251 55.000 2.58 0.00 38.70 2.59
4635 4783 1.523758 CCCTGGCACAACTTGTAGAC 58.476 55.000 0.00 0.00 38.70 2.59
4636 4784 1.202758 CCCTGGCACAACTTGTAGACA 60.203 52.381 0.00 0.00 38.70 3.41
4637 4785 2.146342 CCTGGCACAACTTGTAGACAG 58.854 52.381 15.19 15.19 38.70 3.51
4638 4786 2.485479 CCTGGCACAACTTGTAGACAGT 60.485 50.000 18.30 0.00 38.70 3.55
4639 4787 3.206150 CTGGCACAACTTGTAGACAGTT 58.794 45.455 14.42 0.00 38.70 3.16
4640 4788 2.942376 TGGCACAACTTGTAGACAGTTG 59.058 45.455 16.58 16.58 45.77 3.16
4641 4789 2.290641 GGCACAACTTGTAGACAGTTGG 59.709 50.000 19.70 13.54 44.92 3.77
4642 4790 3.202906 GCACAACTTGTAGACAGTTGGA 58.797 45.455 19.70 0.00 44.92 3.53
4643 4791 3.625764 GCACAACTTGTAGACAGTTGGAA 59.374 43.478 19.70 0.00 44.92 3.53
4644 4792 4.260784 GCACAACTTGTAGACAGTTGGAAG 60.261 45.833 19.70 13.73 44.92 3.46
4645 4793 4.876107 CACAACTTGTAGACAGTTGGAAGT 59.124 41.667 19.70 4.18 44.92 3.01
4646 4794 5.006746 CACAACTTGTAGACAGTTGGAAGTC 59.993 44.000 19.70 0.00 44.92 3.01
4647 4795 3.978687 ACTTGTAGACAGTTGGAAGTCG 58.021 45.455 0.00 0.00 39.67 4.18
4648 4796 3.383825 ACTTGTAGACAGTTGGAAGTCGT 59.616 43.478 0.00 0.00 39.67 4.34
4649 4797 3.637998 TGTAGACAGTTGGAAGTCGTC 57.362 47.619 0.00 0.00 39.67 4.20
4650 4798 2.031420 TGTAGACAGTTGGAAGTCGTCG 60.031 50.000 0.00 0.00 39.67 5.12
4651 4799 1.030457 AGACAGTTGGAAGTCGTCGT 58.970 50.000 0.00 0.00 39.67 4.34
4652 4800 1.129326 GACAGTTGGAAGTCGTCGTG 58.871 55.000 0.00 0.00 0.00 4.35
4653 4801 0.458669 ACAGTTGGAAGTCGTCGTGT 59.541 50.000 0.00 0.00 0.00 4.49
4654 4802 1.134907 ACAGTTGGAAGTCGTCGTGTT 60.135 47.619 0.00 0.00 0.00 3.32
4655 4803 2.099592 ACAGTTGGAAGTCGTCGTGTTA 59.900 45.455 0.00 0.00 0.00 2.41
4656 4804 3.117794 CAGTTGGAAGTCGTCGTGTTAA 58.882 45.455 0.00 0.00 0.00 2.01
4657 4805 3.181774 CAGTTGGAAGTCGTCGTGTTAAG 59.818 47.826 0.00 0.00 0.00 1.85
4658 4806 2.427232 TGGAAGTCGTCGTGTTAAGG 57.573 50.000 0.00 0.00 0.00 2.69
4659 4807 1.066136 GGAAGTCGTCGTGTTAAGGC 58.934 55.000 0.00 0.00 0.00 4.35
4660 4808 1.066136 GAAGTCGTCGTGTTAAGGCC 58.934 55.000 0.00 0.00 0.00 5.19
4661 4809 0.677842 AAGTCGTCGTGTTAAGGCCT 59.322 50.000 0.00 0.00 0.00 5.19
4662 4810 0.243095 AGTCGTCGTGTTAAGGCCTC 59.757 55.000 5.23 0.00 0.00 4.70
4663 4811 0.038892 GTCGTCGTGTTAAGGCCTCA 60.039 55.000 5.23 0.00 0.00 3.86
4664 4812 0.892755 TCGTCGTGTTAAGGCCTCAT 59.107 50.000 5.23 0.00 0.00 2.90
4665 4813 2.093890 TCGTCGTGTTAAGGCCTCATA 58.906 47.619 5.23 0.00 0.00 2.15
4666 4814 2.098607 TCGTCGTGTTAAGGCCTCATAG 59.901 50.000 5.23 0.00 0.00 2.23
4667 4815 2.798499 CGTCGTGTTAAGGCCTCATAGG 60.798 54.545 5.23 0.00 38.80 2.57
4668 4816 2.429610 GTCGTGTTAAGGCCTCATAGGA 59.570 50.000 5.23 2.63 37.67 2.94
4669 4817 2.429610 TCGTGTTAAGGCCTCATAGGAC 59.570 50.000 5.23 0.00 46.64 3.85
4674 4822 4.857251 GGCCTCATAGGACCAACG 57.143 61.111 0.00 0.00 37.46 4.10
4675 4823 1.523938 GGCCTCATAGGACCAACGC 60.524 63.158 0.00 0.00 37.46 4.84
4676 4824 1.220749 GCCTCATAGGACCAACGCA 59.779 57.895 0.00 0.00 37.67 5.24
4677 4825 1.090052 GCCTCATAGGACCAACGCAC 61.090 60.000 0.00 0.00 37.67 5.34
4678 4826 0.462047 CCTCATAGGACCAACGCACC 60.462 60.000 0.00 0.00 37.67 5.01
4679 4827 0.249120 CTCATAGGACCAACGCACCA 59.751 55.000 0.00 0.00 0.00 4.17
4680 4828 0.249120 TCATAGGACCAACGCACCAG 59.751 55.000 0.00 0.00 0.00 4.00
4681 4829 0.249120 CATAGGACCAACGCACCAGA 59.751 55.000 0.00 0.00 0.00 3.86
4682 4830 0.981183 ATAGGACCAACGCACCAGAA 59.019 50.000 0.00 0.00 0.00 3.02
4683 4831 0.320374 TAGGACCAACGCACCAGAAG 59.680 55.000 0.00 0.00 0.00 2.85
4684 4832 1.070786 GGACCAACGCACCAGAAGA 59.929 57.895 0.00 0.00 0.00 2.87
4685 4833 0.951040 GGACCAACGCACCAGAAGAG 60.951 60.000 0.00 0.00 0.00 2.85
4686 4834 1.569479 GACCAACGCACCAGAAGAGC 61.569 60.000 0.00 0.00 0.00 4.09
4687 4835 1.597854 CCAACGCACCAGAAGAGCA 60.598 57.895 0.00 0.00 0.00 4.26
4688 4836 1.165907 CCAACGCACCAGAAGAGCAA 61.166 55.000 0.00 0.00 0.00 3.91
4689 4837 0.040958 CAACGCACCAGAAGAGCAAC 60.041 55.000 0.00 0.00 0.00 4.17
4690 4838 1.166531 AACGCACCAGAAGAGCAACC 61.167 55.000 0.00 0.00 0.00 3.77
4691 4839 2.671177 CGCACCAGAAGAGCAACCG 61.671 63.158 0.00 0.00 0.00 4.44
4692 4840 2.970974 GCACCAGAAGAGCAACCGC 61.971 63.158 0.00 0.00 38.99 5.68
4693 4841 2.032681 ACCAGAAGAGCAACCGCC 59.967 61.111 0.00 0.00 39.83 6.13
4694 4842 3.121030 CCAGAAGAGCAACCGCCG 61.121 66.667 0.00 0.00 39.83 6.46
4695 4843 3.793144 CAGAAGAGCAACCGCCGC 61.793 66.667 0.00 0.00 39.83 6.53
4708 4856 3.479269 GCCGCCGACGAAGACAAG 61.479 66.667 0.00 0.00 43.93 3.16
4709 4857 2.049433 CCGCCGACGAAGACAAGT 60.049 61.111 0.00 0.00 43.93 3.16
4710 4858 1.663702 CCGCCGACGAAGACAAGTT 60.664 57.895 0.00 0.00 43.93 2.66
4711 4859 1.219522 CCGCCGACGAAGACAAGTTT 61.220 55.000 0.00 0.00 43.93 2.66
4712 4860 1.411394 CGCCGACGAAGACAAGTTTA 58.589 50.000 0.00 0.00 43.93 2.01
4713 4861 1.385743 CGCCGACGAAGACAAGTTTAG 59.614 52.381 0.00 0.00 43.93 1.85
4714 4862 2.669364 GCCGACGAAGACAAGTTTAGA 58.331 47.619 0.00 0.00 0.00 2.10
4715 4863 3.251571 GCCGACGAAGACAAGTTTAGAT 58.748 45.455 0.00 0.00 0.00 1.98
4716 4864 3.303760 GCCGACGAAGACAAGTTTAGATC 59.696 47.826 0.00 0.00 0.00 2.75
4717 4865 3.542704 CCGACGAAGACAAGTTTAGATCG 59.457 47.826 0.00 0.00 35.16 3.69
4718 4866 4.400845 CGACGAAGACAAGTTTAGATCGA 58.599 43.478 0.00 0.00 33.42 3.59
4719 4867 4.849926 CGACGAAGACAAGTTTAGATCGAA 59.150 41.667 0.00 0.00 33.42 3.71
4720 4868 5.341462 CGACGAAGACAAGTTTAGATCGAAA 59.659 40.000 0.00 0.00 33.42 3.46
4721 4869 6.033619 CGACGAAGACAAGTTTAGATCGAAAT 59.966 38.462 4.23 0.00 33.42 2.17
4722 4870 7.050281 ACGAAGACAAGTTTAGATCGAAATG 57.950 36.000 4.23 2.79 33.42 2.32
4723 4871 6.866770 ACGAAGACAAGTTTAGATCGAAATGA 59.133 34.615 4.23 0.00 33.42 2.57
4724 4872 7.545965 ACGAAGACAAGTTTAGATCGAAATGAT 59.454 33.333 4.23 0.00 41.06 2.45
4734 4882 3.808728 GATCGAAATGATCCAACCTCCA 58.191 45.455 0.00 0.00 46.55 3.86
4735 4883 2.985896 TCGAAATGATCCAACCTCCAC 58.014 47.619 0.00 0.00 0.00 4.02
4736 4884 2.304470 TCGAAATGATCCAACCTCCACA 59.696 45.455 0.00 0.00 0.00 4.17
4737 4885 2.420022 CGAAATGATCCAACCTCCACAC 59.580 50.000 0.00 0.00 0.00 3.82
4738 4886 3.690460 GAAATGATCCAACCTCCACACT 58.310 45.455 0.00 0.00 0.00 3.55
4739 4887 4.622933 CGAAATGATCCAACCTCCACACTA 60.623 45.833 0.00 0.00 0.00 2.74
4740 4888 4.927267 AATGATCCAACCTCCACACTAA 57.073 40.909 0.00 0.00 0.00 2.24
4741 4889 4.927267 ATGATCCAACCTCCACACTAAA 57.073 40.909 0.00 0.00 0.00 1.85
4742 4890 4.927267 TGATCCAACCTCCACACTAAAT 57.073 40.909 0.00 0.00 0.00 1.40
4743 4891 4.588899 TGATCCAACCTCCACACTAAATG 58.411 43.478 0.00 0.00 0.00 2.32
4744 4892 4.288366 TGATCCAACCTCCACACTAAATGA 59.712 41.667 0.00 0.00 0.00 2.57
4745 4893 4.927267 TCCAACCTCCACACTAAATGAT 57.073 40.909 0.00 0.00 0.00 2.45
4746 4894 4.588899 TCCAACCTCCACACTAAATGATG 58.411 43.478 0.00 0.00 0.00 3.07
4747 4895 4.042809 TCCAACCTCCACACTAAATGATGT 59.957 41.667 0.00 0.00 0.00 3.06
4748 4896 4.156556 CCAACCTCCACACTAAATGATGTG 59.843 45.833 0.00 0.00 44.79 3.21
4749 4897 4.640771 ACCTCCACACTAAATGATGTGT 57.359 40.909 3.89 0.00 46.79 3.72
4750 4898 4.985538 ACCTCCACACTAAATGATGTGTT 58.014 39.130 3.89 0.00 43.88 3.32
4751 4899 4.761739 ACCTCCACACTAAATGATGTGTTG 59.238 41.667 3.89 0.00 43.88 3.33
4752 4900 5.003160 CCTCCACACTAAATGATGTGTTGA 58.997 41.667 3.89 0.00 43.88 3.18
4753 4901 5.473162 CCTCCACACTAAATGATGTGTTGAA 59.527 40.000 3.89 0.00 43.88 2.69
4754 4902 6.016360 CCTCCACACTAAATGATGTGTTGAAA 60.016 38.462 3.89 0.00 43.88 2.69
4755 4903 6.969366 TCCACACTAAATGATGTGTTGAAAG 58.031 36.000 3.89 0.00 43.88 2.62
4756 4904 6.770303 TCCACACTAAATGATGTGTTGAAAGA 59.230 34.615 3.89 0.00 43.88 2.52
4757 4905 7.041167 TCCACACTAAATGATGTGTTGAAAGAG 60.041 37.037 3.89 0.00 43.88 2.85
4758 4906 7.041167 CCACACTAAATGATGTGTTGAAAGAGA 60.041 37.037 3.89 0.00 43.88 3.10
4759 4907 8.344831 CACACTAAATGATGTGTTGAAAGAGAA 58.655 33.333 0.00 0.00 43.88 2.87
4760 4908 8.902806 ACACTAAATGATGTGTTGAAAGAGAAA 58.097 29.630 0.00 0.00 43.88 2.52
4761 4909 9.903682 CACTAAATGATGTGTTGAAAGAGAAAT 57.096 29.630 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.729868 AGTCTTCCTGCCAACTAAACATT 58.270 39.130 0.00 0.00 0.00 2.71
323 325 4.922103 GGATGTTTCGACGAACTAGTCTTT 59.078 41.667 10.38 0.00 38.90 2.52
377 379 4.514577 ACCGCTGGAATCCTCGCG 62.515 66.667 22.74 22.74 41.20 5.87
596 599 3.067601 CGGCCGGCCTAAAATAGAAATTT 59.932 43.478 41.01 0.00 36.87 1.82
675 678 8.700973 ACATGAAAAATTAAGGTACACTTTGGT 58.299 29.630 0.00 0.00 40.64 3.67
770 773 4.038282 TCGTTTGCCTTCTACTGTTCTACA 59.962 41.667 0.00 0.00 0.00 2.74
777 780 4.143389 CGTTTACTCGTTTGCCTTCTACTG 60.143 45.833 0.00 0.00 0.00 2.74
778 781 3.985925 CGTTTACTCGTTTGCCTTCTACT 59.014 43.478 0.00 0.00 0.00 2.57
779 782 3.983344 TCGTTTACTCGTTTGCCTTCTAC 59.017 43.478 0.00 0.00 0.00 2.59
780 783 3.983344 GTCGTTTACTCGTTTGCCTTCTA 59.017 43.478 0.00 0.00 0.00 2.10
781 784 2.798847 GTCGTTTACTCGTTTGCCTTCT 59.201 45.455 0.00 0.00 0.00 2.85
782 785 2.540931 TGTCGTTTACTCGTTTGCCTTC 59.459 45.455 0.00 0.00 0.00 3.46
783 786 2.286025 GTGTCGTTTACTCGTTTGCCTT 59.714 45.455 0.00 0.00 0.00 4.35
784 787 1.862827 GTGTCGTTTACTCGTTTGCCT 59.137 47.619 0.00 0.00 0.00 4.75
785 788 1.593933 TGTGTCGTTTACTCGTTTGCC 59.406 47.619 0.00 0.00 0.00 4.52
786 789 2.887733 CTGTGTCGTTTACTCGTTTGC 58.112 47.619 0.00 0.00 0.00 3.68
787 790 2.538449 AGCTGTGTCGTTTACTCGTTTG 59.462 45.455 0.00 0.00 0.00 2.93
788 791 2.793232 GAGCTGTGTCGTTTACTCGTTT 59.207 45.455 0.00 0.00 0.00 3.60
789 792 2.034305 AGAGCTGTGTCGTTTACTCGTT 59.966 45.455 0.00 0.00 0.00 3.85
790 793 1.607628 AGAGCTGTGTCGTTTACTCGT 59.392 47.619 0.00 0.00 0.00 4.18
791 794 2.095668 AGAGAGCTGTGTCGTTTACTCG 60.096 50.000 0.00 0.00 0.00 4.18
792 795 3.189702 AGAGAGAGCTGTGTCGTTTACTC 59.810 47.826 2.12 0.00 0.00 2.59
793 796 3.150767 AGAGAGAGCTGTGTCGTTTACT 58.849 45.455 2.12 0.00 0.00 2.24
794 797 3.058155 TGAGAGAGAGCTGTGTCGTTTAC 60.058 47.826 2.12 0.00 0.00 2.01
795 798 3.058155 GTGAGAGAGAGCTGTGTCGTTTA 60.058 47.826 2.12 0.00 0.00 2.01
870 885 1.983224 CGGGAGATGAGGTGTGGTT 59.017 57.895 0.00 0.00 0.00 3.67
876 891 2.060980 GGAGTGCGGGAGATGAGGT 61.061 63.158 0.00 0.00 0.00 3.85
911 928 4.821589 GGTGCGGAGGAAGGCGAG 62.822 72.222 0.00 0.00 0.00 5.03
1171 1188 0.450184 AAAACACGAACGCAAGCAGT 59.550 45.000 0.00 0.00 45.62 4.40
1233 1250 3.517901 TGAATTAGGACACCGAATCTGGT 59.482 43.478 0.00 0.00 45.21 4.00
1241 1258 3.063997 GCAGAACATGAATTAGGACACCG 59.936 47.826 0.00 0.00 0.00 4.94
1287 1304 6.762661 CACAATTGAACCAATTCCAGAAAAGT 59.237 34.615 13.59 0.00 41.40 2.66
1306 1323 8.511321 TCGCAGTTTACTGAATTTATCACAATT 58.489 29.630 13.83 0.00 46.59 2.32
1345 1453 8.924303 TGCTACATAAGGTGAAGTATCATAACT 58.076 33.333 0.00 0.00 38.01 2.24
1366 1474 5.050490 TGAACTTCAGAAACTCACTGCTAC 58.950 41.667 0.00 0.00 35.61 3.58
1400 1508 8.925161 TTGTTTTGTAAATGGAAGAACTGAAG 57.075 30.769 0.00 0.00 0.00 3.02
1412 1520 9.695884 AGCACGTAAAAATTTGTTTTGTAAATG 57.304 25.926 0.00 0.00 0.00 2.32
1501 1609 7.175641 GCAGGAAACAATGCATAAGTAGGATAT 59.824 37.037 0.00 0.00 42.11 1.63
1570 1678 2.239150 AGATGCTGAGTCTGAAATGCCT 59.761 45.455 0.47 0.00 0.00 4.75
1706 1814 4.511826 CCAGTGTCTAAACTTTGTGTCCTC 59.488 45.833 0.00 0.00 0.00 3.71
1708 1816 4.035208 CACCAGTGTCTAAACTTTGTGTCC 59.965 45.833 0.00 0.00 30.81 4.02
1998 2106 3.269178 CCTCAACCAGAAGCTTCAGATC 58.731 50.000 27.57 1.21 0.00 2.75
2011 2119 1.455849 CTGTCTTGCCCCTCAACCA 59.544 57.895 0.00 0.00 0.00 3.67
2071 2179 5.466728 TCTCGTTTGAGATTTTCCACTTCAG 59.533 40.000 0.00 0.00 46.25 3.02
2127 2235 1.137872 GGACCTGATCTCTGAACGCAT 59.862 52.381 0.00 0.00 0.00 4.73
2240 2348 5.220548 CGATTCATTTGATCTGGCGATATCC 60.221 44.000 0.00 0.00 0.00 2.59
2630 2738 1.068434 TCATGACAACGAGACTGTGCA 59.932 47.619 0.00 0.00 0.00 4.57
2670 2778 2.907042 ACTCGACCTTCTCCATTTCCTT 59.093 45.455 0.00 0.00 0.00 3.36
2711 2819 9.818796 CTATGTTCTAAGCTCTGTTTTTCTTTC 57.181 33.333 0.00 0.00 0.00 2.62
3204 3312 0.251653 TTGGACTCGAGGGCTGTACT 60.252 55.000 18.41 0.00 0.00 2.73
3227 3335 4.823989 GCCTCCAGTTGATTATGCTTATGT 59.176 41.667 0.00 0.00 0.00 2.29
3359 3467 1.010046 TCCCTCTCCTTCACATCCCAT 59.990 52.381 0.00 0.00 0.00 4.00
3457 3565 2.891580 TCCATCTCTCCTACAATACCGC 59.108 50.000 0.00 0.00 0.00 5.68
3461 3569 3.576118 GCAGCTCCATCTCTCCTACAATA 59.424 47.826 0.00 0.00 0.00 1.90
3482 3590 2.537401 GCATCAATTTGAAGCTCTGGC 58.463 47.619 17.03 3.98 38.01 4.85
3580 3688 7.121168 CCAAGTTAATACCAGAATCAGCTTTGA 59.879 37.037 0.00 0.00 0.00 2.69
3600 3708 3.181451 TGACTCTCTGATGCAACCAAGTT 60.181 43.478 0.00 0.00 0.00 2.66
3631 3739 7.639113 ACTTCCATTTTAGGATCGCATTTAA 57.361 32.000 0.00 0.00 37.56 1.52
3638 3746 6.816640 TCTTGTGTACTTCCATTTTAGGATCG 59.183 38.462 0.00 0.00 37.56 3.69
3853 3961 3.369756 TCGCTGTCCATAAATGTTCGAAC 59.630 43.478 21.42 21.42 0.00 3.95
3911 4019 6.128063 CCTTTTTCAAAATGGCAGTTTGTGAA 60.128 34.615 31.65 25.01 37.28 3.18
3917 4025 4.502105 ACCCTTTTTCAAAATGGCAGTT 57.498 36.364 8.96 0.00 37.23 3.16
3980 4088 7.870445 GGAATAGTTTGAGGCACATTACAAAAA 59.130 33.333 0.00 0.00 34.76 1.94
3992 4100 5.289083 AGATCTGAGGAATAGTTTGAGGC 57.711 43.478 0.00 0.00 0.00 4.70
4031 4139 7.883311 CAGTAACTTCCCATGTATATTTAGGGG 59.117 40.741 0.00 3.02 40.02 4.79
4032 4140 8.656806 TCAGTAACTTCCCATGTATATTTAGGG 58.343 37.037 0.00 0.00 40.98 3.53
4104 4212 6.379417 TGCACATGGAAATATTCACCACAATA 59.621 34.615 13.97 2.01 36.49 1.90
4117 4225 3.395639 CAACTTTGCTGCACATGGAAAT 58.604 40.909 0.00 0.00 0.00 2.17
4147 4255 6.885735 AGTTGCAATGAAACAGTAAAACAC 57.114 33.333 6.89 0.00 0.00 3.32
4346 4494 8.708742 TCTATTTGAAATTTCAGACACTGTACG 58.291 33.333 19.64 3.80 38.61 3.67
4352 4500 5.795441 GGCGTCTATTTGAAATTTCAGACAC 59.205 40.000 25.61 19.92 38.61 3.67
4354 4502 5.106317 TGGGCGTCTATTTGAAATTTCAGAC 60.106 40.000 19.64 20.07 38.61 3.51
4363 4511 6.576662 TTTGTTTATGGGCGTCTATTTGAA 57.423 33.333 0.00 0.00 0.00 2.69
4373 4521 2.270047 CTTGCCATTTGTTTATGGGCG 58.730 47.619 4.93 0.00 44.35 6.13
4374 4522 3.002102 CACTTGCCATTTGTTTATGGGC 58.998 45.455 4.93 0.00 44.35 5.36
4382 4530 0.752054 CACCACCACTTGCCATTTGT 59.248 50.000 0.00 0.00 0.00 2.83
4383 4531 0.600782 GCACCACCACTTGCCATTTG 60.601 55.000 0.00 0.00 32.21 2.32
4384 4532 0.760189 AGCACCACCACTTGCCATTT 60.760 50.000 0.00 0.00 39.75 2.32
4385 4533 0.112218 TAGCACCACCACTTGCCATT 59.888 50.000 0.00 0.00 39.75 3.16
4386 4534 0.112218 TTAGCACCACCACTTGCCAT 59.888 50.000 0.00 0.00 39.75 4.40
4387 4535 0.106469 TTTAGCACCACCACTTGCCA 60.106 50.000 0.00 0.00 39.75 4.92
4388 4536 0.598065 CTTTAGCACCACCACTTGCC 59.402 55.000 0.00 0.00 39.75 4.52
4389 4537 1.318576 ACTTTAGCACCACCACTTGC 58.681 50.000 0.00 0.00 39.16 4.01
4390 4538 4.819630 TCTAAACTTTAGCACCACCACTTG 59.180 41.667 3.91 0.00 0.00 3.16
4391 4539 5.043737 TCTAAACTTTAGCACCACCACTT 57.956 39.130 3.91 0.00 0.00 3.16
4392 4540 4.505039 CCTCTAAACTTTAGCACCACCACT 60.505 45.833 3.91 0.00 0.00 4.00
4393 4541 3.751698 CCTCTAAACTTTAGCACCACCAC 59.248 47.826 3.91 0.00 0.00 4.16
4394 4542 3.649023 TCCTCTAAACTTTAGCACCACCA 59.351 43.478 3.91 0.00 0.00 4.17
4395 4543 4.281898 TCCTCTAAACTTTAGCACCACC 57.718 45.455 3.91 0.00 0.00 4.61
4396 4544 5.179555 CACTTCCTCTAAACTTTAGCACCAC 59.820 44.000 3.91 0.00 0.00 4.16
4397 4545 5.163237 ACACTTCCTCTAAACTTTAGCACCA 60.163 40.000 3.91 0.00 0.00 4.17
4398 4546 5.306394 ACACTTCCTCTAAACTTTAGCACC 58.694 41.667 3.91 0.00 0.00 5.01
4399 4547 6.862711 AACACTTCCTCTAAACTTTAGCAC 57.137 37.500 3.91 0.00 0.00 4.40
4400 4548 7.012044 GTGAAACACTTCCTCTAAACTTTAGCA 59.988 37.037 3.91 0.00 36.32 3.49
4401 4549 7.353497 GTGAAACACTTCCTCTAAACTTTAGC 58.647 38.462 3.91 0.00 36.32 3.09
4402 4550 7.497909 TGGTGAAACACTTCCTCTAAACTTTAG 59.502 37.037 2.49 2.49 39.98 1.85
4403 4551 7.281549 GTGGTGAAACACTTCCTCTAAACTTTA 59.718 37.037 0.00 0.00 39.98 1.85
4404 4552 6.095021 GTGGTGAAACACTTCCTCTAAACTTT 59.905 38.462 0.00 0.00 39.98 2.66
4405 4553 5.589050 GTGGTGAAACACTTCCTCTAAACTT 59.411 40.000 0.00 0.00 39.98 2.66
4406 4554 5.123936 GTGGTGAAACACTTCCTCTAAACT 58.876 41.667 0.00 0.00 39.98 2.66
4407 4555 5.419760 GTGGTGAAACACTTCCTCTAAAC 57.580 43.478 0.00 0.00 39.98 2.01
4425 4573 7.750947 AAGAGAACACCCTATATAAAGTGGT 57.249 36.000 13.57 8.74 34.50 4.16
4426 4574 9.462606 AAAAAGAGAACACCCTATATAAAGTGG 57.537 33.333 13.57 0.00 34.50 4.00
4456 4604 8.612619 GCTGAATAGATTGGAAATTTCTCGTAA 58.387 33.333 17.42 8.65 0.00 3.18
4457 4605 7.987458 AGCTGAATAGATTGGAAATTTCTCGTA 59.013 33.333 17.42 4.01 0.00 3.43
4458 4606 6.825721 AGCTGAATAGATTGGAAATTTCTCGT 59.174 34.615 17.42 4.09 0.00 4.18
4459 4607 7.256756 AGCTGAATAGATTGGAAATTTCTCG 57.743 36.000 17.42 3.64 0.00 4.04
4467 4615 9.631257 TCATGATTAAAGCTGAATAGATTGGAA 57.369 29.630 0.00 0.00 31.86 3.53
4468 4616 9.060347 GTCATGATTAAAGCTGAATAGATTGGA 57.940 33.333 0.00 0.00 31.86 3.53
4469 4617 8.843262 TGTCATGATTAAAGCTGAATAGATTGG 58.157 33.333 0.00 0.00 31.86 3.16
4470 4618 9.880064 CTGTCATGATTAAAGCTGAATAGATTG 57.120 33.333 0.00 0.00 31.86 2.67
4471 4619 9.624373 ACTGTCATGATTAAAGCTGAATAGATT 57.376 29.630 0.00 0.00 33.08 2.40
4473 4621 9.534565 GTACTGTCATGATTAAAGCTGAATAGA 57.465 33.333 0.00 0.00 0.00 1.98
4474 4622 9.317936 TGTACTGTCATGATTAAAGCTGAATAG 57.682 33.333 0.00 0.00 0.00 1.73
4475 4623 9.665719 TTGTACTGTCATGATTAAAGCTGAATA 57.334 29.630 0.00 0.00 0.00 1.75
4476 4624 8.454106 GTTGTACTGTCATGATTAAAGCTGAAT 58.546 33.333 0.00 0.00 0.00 2.57
4477 4625 7.443879 TGTTGTACTGTCATGATTAAAGCTGAA 59.556 33.333 0.00 0.00 0.00 3.02
4478 4626 6.934083 TGTTGTACTGTCATGATTAAAGCTGA 59.066 34.615 0.00 0.00 0.00 4.26
4479 4627 7.132694 TGTTGTACTGTCATGATTAAAGCTG 57.867 36.000 0.00 0.00 0.00 4.24
4480 4628 7.744087 TTGTTGTACTGTCATGATTAAAGCT 57.256 32.000 0.00 0.00 0.00 3.74
4481 4629 7.860373 TGTTTGTTGTACTGTCATGATTAAAGC 59.140 33.333 0.00 0.00 0.00 3.51
4482 4630 9.169468 GTGTTTGTTGTACTGTCATGATTAAAG 57.831 33.333 0.00 0.00 0.00 1.85
4483 4631 8.132362 GGTGTTTGTTGTACTGTCATGATTAAA 58.868 33.333 0.00 0.00 0.00 1.52
4484 4632 7.283354 TGGTGTTTGTTGTACTGTCATGATTAA 59.717 33.333 0.00 0.00 0.00 1.40
4485 4633 6.768381 TGGTGTTTGTTGTACTGTCATGATTA 59.232 34.615 0.00 0.00 0.00 1.75
4486 4634 5.592282 TGGTGTTTGTTGTACTGTCATGATT 59.408 36.000 0.00 0.00 0.00 2.57
4487 4635 5.129634 TGGTGTTTGTTGTACTGTCATGAT 58.870 37.500 0.00 0.00 0.00 2.45
4488 4636 4.518249 TGGTGTTTGTTGTACTGTCATGA 58.482 39.130 0.00 0.00 0.00 3.07
4489 4637 4.574421 TCTGGTGTTTGTTGTACTGTCATG 59.426 41.667 0.00 0.00 0.00 3.07
4490 4638 4.776349 TCTGGTGTTTGTTGTACTGTCAT 58.224 39.130 0.00 0.00 0.00 3.06
4491 4639 4.209307 TCTGGTGTTTGTTGTACTGTCA 57.791 40.909 0.00 0.00 0.00 3.58
4492 4640 5.554822 TTTCTGGTGTTTGTTGTACTGTC 57.445 39.130 0.00 0.00 0.00 3.51
4493 4641 7.633193 TTATTTCTGGTGTTTGTTGTACTGT 57.367 32.000 0.00 0.00 0.00 3.55
4519 4667 8.798402 TGGTTTACGAATCTGGATGTAATTTTT 58.202 29.630 0.00 0.00 0.00 1.94
4520 4668 8.343168 TGGTTTACGAATCTGGATGTAATTTT 57.657 30.769 0.00 0.00 0.00 1.82
4521 4669 7.931578 TGGTTTACGAATCTGGATGTAATTT 57.068 32.000 0.00 0.00 0.00 1.82
4522 4670 7.993183 AGATGGTTTACGAATCTGGATGTAATT 59.007 33.333 0.00 0.00 29.52 1.40
4523 4671 7.509546 AGATGGTTTACGAATCTGGATGTAAT 58.490 34.615 0.00 0.00 29.52 1.89
4524 4672 6.884832 AGATGGTTTACGAATCTGGATGTAA 58.115 36.000 0.00 0.00 29.52 2.41
4525 4673 6.479972 AGATGGTTTACGAATCTGGATGTA 57.520 37.500 0.00 0.00 29.52 2.29
4526 4674 5.359194 AGATGGTTTACGAATCTGGATGT 57.641 39.130 0.00 0.00 29.52 3.06
4527 4675 5.406780 GCTAGATGGTTTACGAATCTGGATG 59.593 44.000 0.00 1.31 32.35 3.51
4528 4676 5.542779 GCTAGATGGTTTACGAATCTGGAT 58.457 41.667 0.00 0.00 32.35 3.41
4529 4677 4.499188 CGCTAGATGGTTTACGAATCTGGA 60.499 45.833 0.00 0.00 32.35 3.86
4530 4678 3.736252 CGCTAGATGGTTTACGAATCTGG 59.264 47.826 0.00 5.56 32.92 3.86
4531 4679 4.607955 TCGCTAGATGGTTTACGAATCTG 58.392 43.478 0.00 1.20 32.92 2.90
4532 4680 4.913335 TCGCTAGATGGTTTACGAATCT 57.087 40.909 0.00 0.00 34.99 2.40
4545 4693 3.954904 AGTGGTTGTAGTCATCGCTAGAT 59.045 43.478 0.00 0.00 37.65 1.98
4546 4694 3.128764 CAGTGGTTGTAGTCATCGCTAGA 59.871 47.826 0.00 0.00 0.00 2.43
4547 4695 3.128764 TCAGTGGTTGTAGTCATCGCTAG 59.871 47.826 0.00 0.00 0.00 3.42
4548 4696 3.086282 TCAGTGGTTGTAGTCATCGCTA 58.914 45.455 0.00 0.00 0.00 4.26
4549 4697 1.893137 TCAGTGGTTGTAGTCATCGCT 59.107 47.619 0.00 0.00 0.00 4.93
4550 4698 2.363788 TCAGTGGTTGTAGTCATCGC 57.636 50.000 0.00 0.00 0.00 4.58
4551 4699 2.668457 GCTTCAGTGGTTGTAGTCATCG 59.332 50.000 0.00 0.00 0.00 3.84
4552 4700 2.668457 CGCTTCAGTGGTTGTAGTCATC 59.332 50.000 0.00 0.00 0.00 2.92
4553 4701 2.299013 TCGCTTCAGTGGTTGTAGTCAT 59.701 45.455 0.00 0.00 0.00 3.06
4554 4702 1.684450 TCGCTTCAGTGGTTGTAGTCA 59.316 47.619 0.00 0.00 0.00 3.41
4555 4703 2.433868 TCGCTTCAGTGGTTGTAGTC 57.566 50.000 0.00 0.00 0.00 2.59
4556 4704 2.902705 TTCGCTTCAGTGGTTGTAGT 57.097 45.000 0.00 0.00 0.00 2.73
4557 4705 2.345641 CGATTCGCTTCAGTGGTTGTAG 59.654 50.000 0.00 0.00 0.00 2.74
4558 4706 2.029739 TCGATTCGCTTCAGTGGTTGTA 60.030 45.455 0.00 0.00 0.00 2.41
4559 4707 1.148310 CGATTCGCTTCAGTGGTTGT 58.852 50.000 0.00 0.00 0.00 3.32
4560 4708 1.428448 TCGATTCGCTTCAGTGGTTG 58.572 50.000 0.00 0.00 0.00 3.77
4561 4709 2.069273 CTTCGATTCGCTTCAGTGGTT 58.931 47.619 0.00 0.00 0.00 3.67
4562 4710 1.673033 CCTTCGATTCGCTTCAGTGGT 60.673 52.381 0.00 0.00 0.00 4.16
4563 4711 1.002366 CCTTCGATTCGCTTCAGTGG 58.998 55.000 0.00 0.00 0.00 4.00
4564 4712 1.923204 CTCCTTCGATTCGCTTCAGTG 59.077 52.381 0.00 0.00 0.00 3.66
4565 4713 1.737363 GCTCCTTCGATTCGCTTCAGT 60.737 52.381 0.00 0.00 0.00 3.41
4566 4714 0.926846 GCTCCTTCGATTCGCTTCAG 59.073 55.000 0.00 0.00 0.00 3.02
4567 4715 0.802222 CGCTCCTTCGATTCGCTTCA 60.802 55.000 0.00 0.00 0.00 3.02
4568 4716 1.920762 CGCTCCTTCGATTCGCTTC 59.079 57.895 0.00 0.00 0.00 3.86
4569 4717 2.167861 GCGCTCCTTCGATTCGCTT 61.168 57.895 0.00 0.00 42.19 4.68
4570 4718 2.583593 GCGCTCCTTCGATTCGCT 60.584 61.111 0.00 0.00 42.19 4.93
4571 4719 3.631127 GGCGCTCCTTCGATTCGC 61.631 66.667 7.64 8.17 44.39 4.70
4572 4720 3.323136 CGGCGCTCCTTCGATTCG 61.323 66.667 7.64 0.00 0.00 3.34
4573 4721 3.631127 GCGGCGCTCCTTCGATTC 61.631 66.667 26.86 0.00 0.00 2.52
4591 4739 3.917760 GAGGGAGGGACGATGGCG 61.918 72.222 0.00 0.00 44.79 5.69
4592 4740 3.917760 CGAGGGAGGGACGATGGC 61.918 72.222 0.00 0.00 0.00 4.40
4593 4741 3.917760 GCGAGGGAGGGACGATGG 61.918 72.222 0.00 0.00 0.00 3.51
4594 4742 3.144120 CTGCGAGGGAGGGACGATG 62.144 68.421 0.00 0.00 0.00 3.84
4595 4743 2.835431 CTGCGAGGGAGGGACGAT 60.835 66.667 0.00 0.00 0.00 3.73
4598 4746 3.151022 CTCCTGCGAGGGAGGGAC 61.151 72.222 14.01 0.00 46.63 4.46
4611 4759 2.464403 AAGTTGTGCCAGGGCTCCT 61.464 57.895 12.19 0.00 42.51 3.69
4612 4760 2.116125 AAGTTGTGCCAGGGCTCC 59.884 61.111 12.19 2.86 42.51 4.70
4613 4761 0.250727 TACAAGTTGTGCCAGGGCTC 60.251 55.000 18.90 8.68 42.51 4.70
4614 4762 0.250901 CTACAAGTTGTGCCAGGGCT 60.251 55.000 18.90 0.00 42.51 5.19
4615 4763 0.250727 TCTACAAGTTGTGCCAGGGC 60.251 55.000 18.90 2.62 42.35 5.19
4616 4764 1.202758 TGTCTACAAGTTGTGCCAGGG 60.203 52.381 18.90 2.41 0.00 4.45
4617 4765 2.146342 CTGTCTACAAGTTGTGCCAGG 58.854 52.381 18.90 2.68 0.00 4.45
4618 4766 2.838736 ACTGTCTACAAGTTGTGCCAG 58.161 47.619 18.90 20.01 31.47 4.85
4619 4767 2.942376 CAACTGTCTACAAGTTGTGCCA 59.058 45.455 18.90 10.61 38.36 4.92
4620 4768 2.290641 CCAACTGTCTACAAGTTGTGCC 59.709 50.000 18.90 6.61 40.69 5.01
4621 4769 3.202906 TCCAACTGTCTACAAGTTGTGC 58.797 45.455 18.90 9.07 40.69 4.57
4622 4770 4.876107 ACTTCCAACTGTCTACAAGTTGTG 59.124 41.667 18.90 8.69 40.69 3.33
4623 4771 5.099042 ACTTCCAACTGTCTACAAGTTGT 57.901 39.130 14.05 14.05 40.69 3.32
4624 4772 4.209288 CGACTTCCAACTGTCTACAAGTTG 59.791 45.833 0.00 0.00 41.61 3.16
4625 4773 4.142004 ACGACTTCCAACTGTCTACAAGTT 60.142 41.667 0.00 0.00 0.00 2.66
4626 4774 3.383825 ACGACTTCCAACTGTCTACAAGT 59.616 43.478 0.00 0.00 0.00 3.16
4627 4775 3.978687 ACGACTTCCAACTGTCTACAAG 58.021 45.455 0.00 0.00 0.00 3.16
4628 4776 3.549423 CGACGACTTCCAACTGTCTACAA 60.549 47.826 0.00 0.00 0.00 2.41
4629 4777 2.031420 CGACGACTTCCAACTGTCTACA 60.031 50.000 0.00 0.00 0.00 2.74
4630 4778 2.031333 ACGACGACTTCCAACTGTCTAC 60.031 50.000 0.00 0.00 0.00 2.59
4631 4779 2.031420 CACGACGACTTCCAACTGTCTA 60.031 50.000 0.00 0.00 0.00 2.59
4632 4780 1.030457 ACGACGACTTCCAACTGTCT 58.970 50.000 0.00 0.00 0.00 3.41
4633 4781 1.129326 CACGACGACTTCCAACTGTC 58.871 55.000 0.00 0.00 0.00 3.51
4634 4782 0.458669 ACACGACGACTTCCAACTGT 59.541 50.000 0.00 0.00 0.00 3.55
4635 4783 1.567504 AACACGACGACTTCCAACTG 58.432 50.000 0.00 0.00 0.00 3.16
4636 4784 3.378339 CTTAACACGACGACTTCCAACT 58.622 45.455 0.00 0.00 0.00 3.16
4637 4785 2.473984 CCTTAACACGACGACTTCCAAC 59.526 50.000 0.00 0.00 0.00 3.77
4638 4786 2.746269 CCTTAACACGACGACTTCCAA 58.254 47.619 0.00 0.00 0.00 3.53
4639 4787 1.603678 GCCTTAACACGACGACTTCCA 60.604 52.381 0.00 0.00 0.00 3.53
4640 4788 1.066136 GCCTTAACACGACGACTTCC 58.934 55.000 0.00 0.00 0.00 3.46
4641 4789 1.066136 GGCCTTAACACGACGACTTC 58.934 55.000 0.00 0.00 0.00 3.01
4642 4790 0.677842 AGGCCTTAACACGACGACTT 59.322 50.000 0.00 0.00 0.00 3.01
4643 4791 0.243095 GAGGCCTTAACACGACGACT 59.757 55.000 6.77 0.00 0.00 4.18
4644 4792 0.038892 TGAGGCCTTAACACGACGAC 60.039 55.000 6.77 0.00 0.00 4.34
4645 4793 0.892755 ATGAGGCCTTAACACGACGA 59.107 50.000 6.77 0.00 0.00 4.20
4646 4794 2.460918 CTATGAGGCCTTAACACGACG 58.539 52.381 6.77 0.00 0.00 5.12
4647 4795 2.429610 TCCTATGAGGCCTTAACACGAC 59.570 50.000 6.77 0.00 34.61 4.34
4648 4796 2.429610 GTCCTATGAGGCCTTAACACGA 59.570 50.000 6.77 0.00 34.61 4.35
4649 4797 2.483188 GGTCCTATGAGGCCTTAACACG 60.483 54.545 6.77 0.00 34.61 4.49
4650 4798 2.504175 TGGTCCTATGAGGCCTTAACAC 59.496 50.000 6.77 0.00 34.61 3.32
4651 4799 2.840511 TGGTCCTATGAGGCCTTAACA 58.159 47.619 6.77 0.00 34.61 2.41
4652 4800 3.542648 GTTGGTCCTATGAGGCCTTAAC 58.457 50.000 6.77 0.00 34.61 2.01
4653 4801 2.169769 CGTTGGTCCTATGAGGCCTTAA 59.830 50.000 6.77 0.00 34.61 1.85
4654 4802 1.760613 CGTTGGTCCTATGAGGCCTTA 59.239 52.381 6.77 1.66 34.61 2.69
4655 4803 0.541863 CGTTGGTCCTATGAGGCCTT 59.458 55.000 6.77 0.00 34.61 4.35
4656 4804 1.972660 GCGTTGGTCCTATGAGGCCT 61.973 60.000 3.86 3.86 34.61 5.19
4657 4805 1.523938 GCGTTGGTCCTATGAGGCC 60.524 63.158 0.00 0.00 34.61 5.19
4658 4806 1.090052 GTGCGTTGGTCCTATGAGGC 61.090 60.000 0.00 0.00 34.61 4.70
4659 4807 0.462047 GGTGCGTTGGTCCTATGAGG 60.462 60.000 0.00 0.00 36.46 3.86
4660 4808 0.249120 TGGTGCGTTGGTCCTATGAG 59.751 55.000 0.00 0.00 0.00 2.90
4661 4809 0.249120 CTGGTGCGTTGGTCCTATGA 59.751 55.000 0.00 0.00 0.00 2.15
4662 4810 0.249120 TCTGGTGCGTTGGTCCTATG 59.751 55.000 0.00 0.00 0.00 2.23
4663 4811 0.981183 TTCTGGTGCGTTGGTCCTAT 59.019 50.000 0.00 0.00 0.00 2.57
4664 4812 0.320374 CTTCTGGTGCGTTGGTCCTA 59.680 55.000 0.00 0.00 0.00 2.94
4665 4813 1.071471 CTTCTGGTGCGTTGGTCCT 59.929 57.895 0.00 0.00 0.00 3.85
4666 4814 0.951040 CTCTTCTGGTGCGTTGGTCC 60.951 60.000 0.00 0.00 0.00 4.46
4667 4815 1.569479 GCTCTTCTGGTGCGTTGGTC 61.569 60.000 0.00 0.00 0.00 4.02
4668 4816 1.598130 GCTCTTCTGGTGCGTTGGT 60.598 57.895 0.00 0.00 0.00 3.67
4669 4817 1.165907 TTGCTCTTCTGGTGCGTTGG 61.166 55.000 0.00 0.00 37.26 3.77
4670 4818 0.040958 GTTGCTCTTCTGGTGCGTTG 60.041 55.000 0.00 0.00 37.26 4.10
4671 4819 1.166531 GGTTGCTCTTCTGGTGCGTT 61.167 55.000 0.00 0.00 37.26 4.84
4672 4820 1.598130 GGTTGCTCTTCTGGTGCGT 60.598 57.895 0.00 0.00 37.26 5.24
4673 4821 2.671177 CGGTTGCTCTTCTGGTGCG 61.671 63.158 0.00 0.00 37.26 5.34
4674 4822 2.970974 GCGGTTGCTCTTCTGGTGC 61.971 63.158 0.00 0.00 38.39 5.01
4675 4823 2.328099 GGCGGTTGCTCTTCTGGTG 61.328 63.158 0.00 0.00 42.25 4.17
4676 4824 2.032681 GGCGGTTGCTCTTCTGGT 59.967 61.111 0.00 0.00 42.25 4.00
4677 4825 3.121030 CGGCGGTTGCTCTTCTGG 61.121 66.667 0.00 0.00 42.25 3.86
4678 4826 3.793144 GCGGCGGTTGCTCTTCTG 61.793 66.667 9.78 0.00 42.25 3.02
4691 4839 3.479269 CTTGTCTTCGTCGGCGGC 61.479 66.667 10.62 3.25 38.89 6.53
4692 4840 1.219522 AAACTTGTCTTCGTCGGCGG 61.220 55.000 10.62 0.00 38.89 6.13
4693 4841 1.385743 CTAAACTTGTCTTCGTCGGCG 59.614 52.381 1.15 1.15 39.92 6.46
4694 4842 2.669364 TCTAAACTTGTCTTCGTCGGC 58.331 47.619 0.00 0.00 0.00 5.54
4695 4843 3.542704 CGATCTAAACTTGTCTTCGTCGG 59.457 47.826 0.00 0.00 0.00 4.79
4696 4844 4.400845 TCGATCTAAACTTGTCTTCGTCG 58.599 43.478 0.00 0.00 0.00 5.12
4697 4845 6.686130 TTTCGATCTAAACTTGTCTTCGTC 57.314 37.500 0.00 0.00 0.00 4.20
4698 4846 6.866770 TCATTTCGATCTAAACTTGTCTTCGT 59.133 34.615 0.00 0.00 0.00 3.85
4699 4847 7.278211 TCATTTCGATCTAAACTTGTCTTCG 57.722 36.000 0.00 0.00 0.00 3.79
4702 4850 7.824289 TTGGATCATTTCGATCTAAACTTGTCT 59.176 33.333 0.00 0.00 45.53 3.41
4703 4851 7.974675 TTGGATCATTTCGATCTAAACTTGTC 58.025 34.615 0.00 0.00 45.53 3.18
4704 4852 7.921786 TTGGATCATTTCGATCTAAACTTGT 57.078 32.000 0.00 0.00 45.53 3.16
4714 4862 3.054434 TGTGGAGGTTGGATCATTTCGAT 60.054 43.478 0.00 0.00 36.91 3.59
4715 4863 2.304470 TGTGGAGGTTGGATCATTTCGA 59.696 45.455 0.00 0.00 0.00 3.71
4716 4864 2.420022 GTGTGGAGGTTGGATCATTTCG 59.580 50.000 0.00 0.00 0.00 3.46
4717 4865 3.690460 AGTGTGGAGGTTGGATCATTTC 58.310 45.455 0.00 0.00 0.00 2.17
4718 4866 3.814504 AGTGTGGAGGTTGGATCATTT 57.185 42.857 0.00 0.00 0.00 2.32
4719 4867 4.927267 TTAGTGTGGAGGTTGGATCATT 57.073 40.909 0.00 0.00 0.00 2.57
4720 4868 4.927267 TTTAGTGTGGAGGTTGGATCAT 57.073 40.909 0.00 0.00 0.00 2.45
4721 4869 4.288366 TCATTTAGTGTGGAGGTTGGATCA 59.712 41.667 0.00 0.00 0.00 2.92
4722 4870 4.843728 TCATTTAGTGTGGAGGTTGGATC 58.156 43.478 0.00 0.00 0.00 3.36
4723 4871 4.927267 TCATTTAGTGTGGAGGTTGGAT 57.073 40.909 0.00 0.00 0.00 3.41
4724 4872 4.042809 ACATCATTTAGTGTGGAGGTTGGA 59.957 41.667 0.00 0.00 0.00 3.53
4725 4873 4.156556 CACATCATTTAGTGTGGAGGTTGG 59.843 45.833 0.00 0.00 41.46 3.77
4726 4874 5.300969 CACATCATTTAGTGTGGAGGTTG 57.699 43.478 0.00 0.00 41.46 3.77
4727 4875 8.340249 TTCAACACATCATTTAGTGTGGAGGTT 61.340 37.037 9.90 0.00 46.22 3.50
4728 4876 6.915219 TTCAACACATCATTTAGTGTGGAGGT 60.915 38.462 9.90 0.00 46.22 3.85
4729 4877 5.473162 TTCAACACATCATTTAGTGTGGAGG 59.527 40.000 9.90 0.26 46.22 4.30
4730 4878 6.558771 TTCAACACATCATTTAGTGTGGAG 57.441 37.500 9.90 2.71 46.22 3.86
4735 4883 9.903682 ATTTCTCTTTCAACACATCATTTAGTG 57.096 29.630 0.00 0.00 41.40 2.74



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.