Multiple sequence alignment - TraesCS6A01G180400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G180400 chr6A 100.000 3460 0 0 253 3712 204716633 204720092 0.000000e+00 6390.0
1 TraesCS6A01G180400 chr6A 100.000 57 0 0 1 57 204716381 204716437 5.070000e-19 106.0
2 TraesCS6A01G180400 chr6D 93.967 2304 92 19 635 2918 143691955 143689679 0.000000e+00 3441.0
3 TraesCS6A01G180400 chr6D 90.361 415 37 2 3298 3712 143679180 143678769 3.260000e-150 542.0
4 TraesCS6A01G180400 chr6D 75.270 833 178 26 1116 1936 144091041 144090225 4.530000e-99 372.0
5 TraesCS6A01G180400 chr6D 86.053 337 25 5 2983 3303 143688432 143688102 3.550000e-90 342.0
6 TraesCS6A01G180400 chr6D 84.109 258 38 3 253 508 39283500 39283756 2.860000e-61 246.0
7 TraesCS6A01G180400 chr6B 93.486 2272 88 18 635 2878 256016558 256014319 0.000000e+00 3321.0
8 TraesCS6A01G180400 chr6B 88.462 780 59 7 2959 3710 256013602 256012826 0.000000e+00 913.0
9 TraesCS6A01G180400 chr6B 75.928 835 169 31 1116 1936 256447865 256447049 2.080000e-107 399.0
10 TraesCS6A01G180400 chr6B 75.418 598 133 12 2049 2639 184700746 184700156 1.020000e-70 278.0
11 TraesCS6A01G180400 chr6B 75.251 598 134 13 2049 2639 184705818 184705228 4.720000e-69 272.0
12 TraesCS6A01G180400 chr6B 74.037 597 143 10 2049 2639 184703438 184702848 2.230000e-57 233.0
13 TraesCS6A01G180400 chr6B 96.154 52 2 0 4 55 623733353 623733302 6.610000e-13 86.1
14 TraesCS6A01G180400 chr2B 75.151 829 175 26 1122 1936 103960778 103961589 9.800000e-96 361.0
15 TraesCS6A01G180400 chr5B 81.548 336 46 9 3380 3712 190789939 190789617 2.840000e-66 263.0
16 TraesCS6A01G180400 chr5B 82.645 242 35 5 269 507 358814004 358814241 1.350000e-49 207.0
17 TraesCS6A01G180400 chr5B 81.111 180 32 2 329 506 325935914 325936093 3.860000e-30 143.0
18 TraesCS6A01G180400 chr2A 81.194 335 51 7 3380 3712 328900460 328900784 3.680000e-65 259.0
19 TraesCS6A01G180400 chr4B 80.952 336 51 10 3379 3712 320692274 320691950 1.710000e-63 254.0
20 TraesCS6A01G180400 chrUn 80.597 335 53 7 3379 3712 118575871 118575548 7.960000e-62 248.0
21 TraesCS6A01G180400 chrUn 80.597 335 53 7 3379 3712 118586680 118586357 7.960000e-62 248.0
22 TraesCS6A01G180400 chrUn 80.597 335 53 7 3379 3712 130308282 130307959 7.960000e-62 248.0
23 TraesCS6A01G180400 chrUn 80.597 335 53 7 3379 3712 130320204 130319881 7.960000e-62 248.0
24 TraesCS6A01G180400 chr2D 82.143 252 41 4 257 506 509121688 509121439 2.900000e-51 213.0
25 TraesCS6A01G180400 chr2D 79.638 221 40 5 2348 2566 370651613 370651396 1.790000e-33 154.0
26 TraesCS6A01G180400 chr2D 94.737 38 2 0 1 38 150900643 150900680 4.000000e-05 60.2
27 TraesCS6A01G180400 chr4D 74.349 499 116 8 1126 1618 503563378 503563870 6.290000e-48 202.0
28 TraesCS6A01G180400 chr4D 81.757 148 16 8 264 411 47909058 47908922 3.030000e-21 113.0
29 TraesCS6A01G180400 chr4D 100.000 32 0 0 23 54 72523070 72523101 4.000000e-05 60.2
30 TraesCS6A01G180400 chr7D 82.667 225 37 2 263 486 292260427 292260204 8.130000e-47 198.0
31 TraesCS6A01G180400 chr7D 98.246 57 1 0 1 57 535738554 535738498 2.360000e-17 100.0
32 TraesCS6A01G180400 chr5D 82.667 225 35 4 264 487 407925392 407925171 2.920000e-46 196.0
33 TraesCS6A01G180400 chr3D 81.614 223 37 4 287 506 330906213 330905992 8.190000e-42 182.0
34 TraesCS6A01G180400 chr3B 82.011 189 29 5 287 472 818922111 818921925 4.960000e-34 156.0
35 TraesCS6A01G180400 chr3B 94.545 55 3 0 3 57 341230904 341230850 6.610000e-13 86.1
36 TraesCS6A01G180400 chr1D 82.759 174 28 2 335 506 461339837 461340010 1.790000e-33 154.0
37 TraesCS6A01G180400 chr1D 100.000 51 0 0 7 57 124094439 124094489 1.100000e-15 95.3
38 TraesCS6A01G180400 chr7A 94.737 57 3 0 1 57 536934889 536934945 5.110000e-14 89.8
39 TraesCS6A01G180400 chr1A 94.737 57 3 0 1 57 568782826 568782882 5.110000e-14 89.8
40 TraesCS6A01G180400 chr5A 95.745 47 2 0 3 49 693143412 693143366 3.980000e-10 76.8
41 TraesCS6A01G180400 chr7B 93.878 49 3 0 6 54 720303999 720304047 1.430000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G180400 chr6A 204716381 204720092 3711 False 3248.0 6390 100.000 1 3712 2 chr6A.!!$F1 3711
1 TraesCS6A01G180400 chr6D 143688102 143691955 3853 True 1891.5 3441 90.010 635 3303 2 chr6D.!!$R3 2668
2 TraesCS6A01G180400 chr6D 144090225 144091041 816 True 372.0 372 75.270 1116 1936 1 chr6D.!!$R2 820
3 TraesCS6A01G180400 chr6B 256012826 256016558 3732 True 2117.0 3321 90.974 635 3710 2 chr6B.!!$R4 3075
4 TraesCS6A01G180400 chr6B 256447049 256447865 816 True 399.0 399 75.928 1116 1936 1 chr6B.!!$R1 820
5 TraesCS6A01G180400 chr6B 184700156 184705818 5662 True 261.0 278 74.902 2049 2639 3 chr6B.!!$R3 590
6 TraesCS6A01G180400 chr2B 103960778 103961589 811 False 361.0 361 75.151 1122 1936 1 chr2B.!!$F1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 471 0.024111 GTTTATCCCGAACGAACGCG 59.976 55.000 3.53 3.53 44.79 6.01 F
645 646 0.030235 GTTGTTGGCTTGTTCGTCCC 59.970 55.000 0.00 0.00 0.00 4.46 F
701 702 0.258484 TCCATTCCACGCATCCCATT 59.742 50.000 0.00 0.00 0.00 3.16 F
1358 1380 1.202604 CCGTATCCACCCACCATACAC 60.203 57.143 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2054 0.530288 AAGGTGCGCAAGTGTTGTTT 59.470 45.0 14.00 0.0 41.68 2.83 R
2029 2057 0.660488 TGTAAGGTGCGCAAGTGTTG 59.340 50.0 14.00 0.0 41.68 3.33 R
2030 2058 0.944386 CTGTAAGGTGCGCAAGTGTT 59.056 50.0 14.00 5.8 41.68 3.32 R
2933 8636 0.098728 CAATGACCGGGATTGTTCGC 59.901 55.0 16.59 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.365265 GGCTGCGACAAGGGTTGG 61.365 66.667 0.00 0.00 34.12 3.77
18 19 3.365265 GCTGCGACAAGGGTTGGG 61.365 66.667 0.00 0.00 34.12 4.12
19 20 2.672996 CTGCGACAAGGGTTGGGG 60.673 66.667 0.00 0.00 34.12 4.96
20 21 4.966787 TGCGACAAGGGTTGGGGC 62.967 66.667 0.00 0.00 34.75 5.80
22 23 4.323477 CGACAAGGGTTGGGGCGA 62.323 66.667 0.00 0.00 34.12 5.54
23 24 2.359975 GACAAGGGTTGGGGCGAG 60.360 66.667 0.00 0.00 34.12 5.03
24 25 4.660938 ACAAGGGTTGGGGCGAGC 62.661 66.667 0.00 0.00 34.12 5.03
53 54 4.789075 CTGCACAGCGGCAATGGC 62.789 66.667 1.45 0.00 44.40 4.40
291 292 3.347168 GGGTTTGTTTCCCCGACG 58.653 61.111 0.00 0.00 39.08 5.12
292 293 2.263021 GGGTTTGTTTCCCCGACGG 61.263 63.158 6.99 6.99 39.08 4.79
311 312 2.768344 CGGGCCAGGGTAGGACAT 60.768 66.667 4.39 0.00 38.98 3.06
312 313 2.919043 GGGCCAGGGTAGGACATG 59.081 66.667 4.39 0.00 38.98 3.21
313 314 1.692749 GGGCCAGGGTAGGACATGA 60.693 63.158 4.39 0.00 38.98 3.07
314 315 1.700042 GGGCCAGGGTAGGACATGAG 61.700 65.000 4.39 0.00 38.98 2.90
315 316 1.147153 GCCAGGGTAGGACATGAGC 59.853 63.158 0.00 0.00 0.00 4.26
316 317 1.626356 GCCAGGGTAGGACATGAGCA 61.626 60.000 0.00 0.00 0.00 4.26
317 318 0.467384 CCAGGGTAGGACATGAGCAG 59.533 60.000 0.00 0.00 0.00 4.24
318 319 0.467384 CAGGGTAGGACATGAGCAGG 59.533 60.000 0.00 0.00 0.00 4.85
319 320 1.147153 GGGTAGGACATGAGCAGGC 59.853 63.158 0.00 0.00 0.00 4.85
320 321 1.227380 GGTAGGACATGAGCAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
321 322 1.884926 GTAGGACATGAGCAGGCGC 60.885 63.158 0.00 0.00 38.99 6.53
322 323 3.094062 TAGGACATGAGCAGGCGCC 62.094 63.158 21.89 21.89 39.83 6.53
323 324 4.783621 GGACATGAGCAGGCGCCA 62.784 66.667 31.54 7.75 39.83 5.69
324 325 3.503363 GACATGAGCAGGCGCCAC 61.503 66.667 31.54 20.82 39.83 5.01
344 345 4.702081 ACCGTCTGCGCGTGTCTC 62.702 66.667 8.43 0.00 36.67 3.36
345 346 4.406173 CCGTCTGCGCGTGTCTCT 62.406 66.667 8.43 0.00 36.67 3.10
346 347 2.429236 CGTCTGCGCGTGTCTCTT 60.429 61.111 8.43 0.00 0.00 2.85
347 348 2.429351 CGTCTGCGCGTGTCTCTTC 61.429 63.158 8.43 0.00 0.00 2.87
348 349 2.126850 TCTGCGCGTGTCTCTTCG 60.127 61.111 8.43 0.00 0.00 3.79
349 350 3.175240 CTGCGCGTGTCTCTTCGG 61.175 66.667 8.43 0.00 0.00 4.30
354 355 4.717629 CGTGTCTCTTCGGCCGCA 62.718 66.667 23.51 9.50 0.00 5.69
355 356 2.357034 GTGTCTCTTCGGCCGCAA 60.357 61.111 23.51 14.85 0.00 4.85
356 357 1.959226 GTGTCTCTTCGGCCGCAAA 60.959 57.895 23.51 10.08 0.00 3.68
357 358 1.959226 TGTCTCTTCGGCCGCAAAC 60.959 57.895 23.51 14.12 0.00 2.93
358 359 1.668151 GTCTCTTCGGCCGCAAACT 60.668 57.895 23.51 0.00 0.00 2.66
359 360 1.374252 TCTCTTCGGCCGCAAACTC 60.374 57.895 23.51 0.00 0.00 3.01
360 361 2.730672 CTCTTCGGCCGCAAACTCG 61.731 63.158 23.51 0.00 0.00 4.18
367 368 3.291383 CCGCAAACTCGGCCCAAA 61.291 61.111 0.00 0.00 43.18 3.28
368 369 2.050442 CGCAAACTCGGCCCAAAC 60.050 61.111 0.00 0.00 0.00 2.93
369 370 2.551912 CGCAAACTCGGCCCAAACT 61.552 57.895 0.00 0.00 0.00 2.66
370 371 1.739667 GCAAACTCGGCCCAAACTT 59.260 52.632 0.00 0.00 0.00 2.66
371 372 0.597377 GCAAACTCGGCCCAAACTTG 60.597 55.000 0.00 0.00 0.00 3.16
382 383 1.894881 CCAAACTTGGGCCCAAAATG 58.105 50.000 36.16 30.25 44.70 2.32
383 384 1.545204 CCAAACTTGGGCCCAAAATGG 60.545 52.381 36.16 33.96 44.70 3.16
393 394 3.399879 CCAAAATGGGTCGAAAGCG 57.600 52.632 0.00 0.00 32.67 4.68
394 395 0.878416 CCAAAATGGGTCGAAAGCGA 59.122 50.000 0.00 0.00 37.85 4.93
404 405 2.638628 TCGAAAGCGAACAGAAAACG 57.361 45.000 0.00 0.00 44.78 3.60
405 406 1.259507 TCGAAAGCGAACAGAAAACGG 59.740 47.619 0.00 0.00 44.78 4.44
406 407 1.259507 CGAAAGCGAACAGAAAACGGA 59.740 47.619 0.00 0.00 40.82 4.69
407 408 2.636519 GAAAGCGAACAGAAAACGGAC 58.363 47.619 0.00 0.00 0.00 4.79
408 409 0.580104 AAGCGAACAGAAAACGGACG 59.420 50.000 0.00 0.00 0.00 4.79
409 410 0.249155 AGCGAACAGAAAACGGACGA 60.249 50.000 0.00 0.00 0.00 4.20
410 411 0.111398 GCGAACAGAAAACGGACGAC 60.111 55.000 0.00 0.00 0.00 4.34
414 415 0.595825 ACAGAAAACGGACGACGGTC 60.596 55.000 0.00 0.00 45.59 4.79
422 423 3.759828 GACGACGGTCCGTTTGCG 61.760 66.667 19.95 19.44 43.49 4.85
437 438 2.480555 GCGGACGCACATTGGAAG 59.519 61.111 12.31 0.00 41.49 3.46
438 439 3.039202 GCGGACGCACATTGGAAGG 62.039 63.158 12.31 0.00 41.49 3.46
439 440 2.877691 GGACGCACATTGGAAGGC 59.122 61.111 0.00 0.00 0.00 4.35
440 441 2.700773 GGACGCACATTGGAAGGCC 61.701 63.158 0.00 0.00 0.00 5.19
441 442 1.675641 GACGCACATTGGAAGGCCT 60.676 57.895 0.00 0.00 34.31 5.19
442 443 1.926511 GACGCACATTGGAAGGCCTG 61.927 60.000 5.69 0.00 34.31 4.85
443 444 2.575461 GCACATTGGAAGGCCTGC 59.425 61.111 5.69 2.81 34.31 4.85
444 445 1.980772 GCACATTGGAAGGCCTGCT 60.981 57.895 11.64 0.00 31.05 4.24
445 446 1.941999 GCACATTGGAAGGCCTGCTC 61.942 60.000 11.64 2.73 31.05 4.26
446 447 0.323178 CACATTGGAAGGCCTGCTCT 60.323 55.000 11.64 0.00 34.31 4.09
447 448 0.323178 ACATTGGAAGGCCTGCTCTG 60.323 55.000 11.64 8.37 34.31 3.35
448 449 0.323178 CATTGGAAGGCCTGCTCTGT 60.323 55.000 11.64 0.00 34.31 3.41
449 450 0.034670 ATTGGAAGGCCTGCTCTGTC 60.035 55.000 11.64 0.11 34.31 3.51
450 451 2.129555 TTGGAAGGCCTGCTCTGTCC 62.130 60.000 11.64 11.52 34.31 4.02
451 452 2.125350 GAAGGCCTGCTCTGTCCG 60.125 66.667 5.69 0.00 0.00 4.79
452 453 2.925170 AAGGCCTGCTCTGTCCGT 60.925 61.111 5.69 0.00 0.00 4.69
453 454 2.456287 GAAGGCCTGCTCTGTCCGTT 62.456 60.000 5.69 0.00 0.00 4.44
454 455 2.032681 GGCCTGCTCTGTCCGTTT 59.967 61.111 0.00 0.00 0.00 3.60
455 456 1.192146 AGGCCTGCTCTGTCCGTTTA 61.192 55.000 3.11 0.00 0.00 2.01
456 457 0.107654 GGCCTGCTCTGTCCGTTTAT 60.108 55.000 0.00 0.00 0.00 1.40
457 458 1.291132 GCCTGCTCTGTCCGTTTATC 58.709 55.000 0.00 0.00 0.00 1.75
458 459 1.941325 CCTGCTCTGTCCGTTTATCC 58.059 55.000 0.00 0.00 0.00 2.59
459 460 1.473434 CCTGCTCTGTCCGTTTATCCC 60.473 57.143 0.00 0.00 0.00 3.85
460 461 0.174845 TGCTCTGTCCGTTTATCCCG 59.825 55.000 0.00 0.00 0.00 5.14
461 462 0.458669 GCTCTGTCCGTTTATCCCGA 59.541 55.000 0.00 0.00 0.00 5.14
462 463 1.134907 GCTCTGTCCGTTTATCCCGAA 60.135 52.381 0.00 0.00 0.00 4.30
463 464 2.537401 CTCTGTCCGTTTATCCCGAAC 58.463 52.381 0.00 0.00 0.00 3.95
464 465 1.135315 TCTGTCCGTTTATCCCGAACG 60.135 52.381 2.68 2.68 46.82 3.95
469 470 3.863942 GTTTATCCCGAACGAACGC 57.136 52.632 0.00 0.00 0.00 4.84
470 471 0.024111 GTTTATCCCGAACGAACGCG 59.976 55.000 3.53 3.53 44.79 6.01
471 472 1.077645 TTTATCCCGAACGAACGCGG 61.078 55.000 12.47 0.00 46.80 6.46
487 488 4.176752 GGGCGGACAGGATGGGTC 62.177 72.222 0.00 0.00 43.62 4.46
492 493 3.820425 GACAGGATGGGTCCCACA 58.180 61.111 14.57 0.00 46.34 4.17
493 494 2.311287 GACAGGATGGGTCCCACAT 58.689 57.895 14.57 0.00 46.34 3.21
494 495 0.625849 GACAGGATGGGTCCCACATT 59.374 55.000 14.57 0.00 46.34 2.71
495 496 0.332632 ACAGGATGGGTCCCACATTG 59.667 55.000 14.57 13.77 46.34 2.82
496 497 0.625316 CAGGATGGGTCCCACATTGA 59.375 55.000 14.57 0.00 46.34 2.57
497 498 1.005805 CAGGATGGGTCCCACATTGAA 59.994 52.381 14.57 0.00 46.34 2.69
498 499 1.932338 AGGATGGGTCCCACATTGAAT 59.068 47.619 14.57 0.00 46.34 2.57
499 500 2.315763 AGGATGGGTCCCACATTGAATT 59.684 45.455 14.57 0.00 46.34 2.17
500 501 3.106827 GGATGGGTCCCACATTGAATTT 58.893 45.455 14.57 0.00 38.69 1.82
501 502 3.118665 GGATGGGTCCCACATTGAATTTG 60.119 47.826 14.57 0.00 38.69 2.32
502 503 2.255406 TGGGTCCCACATTGAATTTGG 58.745 47.619 6.47 3.37 0.00 3.28
503 504 1.066215 GGGTCCCACATTGAATTTGGC 60.066 52.381 1.78 0.00 0.00 4.52
504 505 1.066215 GGTCCCACATTGAATTTGGCC 60.066 52.381 4.83 0.00 0.00 5.36
505 506 1.901833 GTCCCACATTGAATTTGGCCT 59.098 47.619 3.32 0.00 0.00 5.19
506 507 2.094026 GTCCCACATTGAATTTGGCCTC 60.094 50.000 3.32 0.00 0.00 4.70
507 508 1.901159 CCCACATTGAATTTGGCCTCA 59.099 47.619 3.32 0.00 0.00 3.86
508 509 2.502538 CCCACATTGAATTTGGCCTCAT 59.497 45.455 3.32 0.00 0.00 2.90
509 510 3.431207 CCCACATTGAATTTGGCCTCATC 60.431 47.826 3.32 0.00 0.00 2.92
510 511 3.441163 CACATTGAATTTGGCCTCATCG 58.559 45.455 3.32 0.00 0.00 3.84
511 512 2.428171 ACATTGAATTTGGCCTCATCGG 59.572 45.455 3.32 0.00 0.00 4.18
512 513 1.473258 TTGAATTTGGCCTCATCGGG 58.527 50.000 3.32 0.00 0.00 5.14
513 514 0.623194 TGAATTTGGCCTCATCGGGA 59.377 50.000 3.32 0.00 0.00 5.14
514 515 1.215173 TGAATTTGGCCTCATCGGGAT 59.785 47.619 3.32 0.00 0.00 3.85
515 516 2.441375 TGAATTTGGCCTCATCGGGATA 59.559 45.455 3.32 0.00 0.00 2.59
516 517 3.074390 TGAATTTGGCCTCATCGGGATAT 59.926 43.478 3.32 0.00 0.00 1.63
517 518 2.566833 TTTGGCCTCATCGGGATATG 57.433 50.000 3.32 0.00 0.00 1.78
518 519 0.692476 TTGGCCTCATCGGGATATGG 59.308 55.000 3.32 0.00 0.00 2.74
519 520 0.473694 TGGCCTCATCGGGATATGGT 60.474 55.000 3.32 0.00 0.00 3.55
520 521 0.036010 GGCCTCATCGGGATATGGTG 60.036 60.000 0.00 0.00 0.00 4.17
521 522 0.687354 GCCTCATCGGGATATGGTGT 59.313 55.000 0.00 0.00 0.00 4.16
522 523 1.899814 GCCTCATCGGGATATGGTGTA 59.100 52.381 0.00 0.00 0.00 2.90
523 524 2.353803 GCCTCATCGGGATATGGTGTAC 60.354 54.545 0.00 0.00 0.00 2.90
524 525 2.897326 CCTCATCGGGATATGGTGTACA 59.103 50.000 0.00 0.00 0.00 2.90
525 526 3.515502 CCTCATCGGGATATGGTGTACAT 59.484 47.826 0.00 0.00 43.68 2.29
526 527 4.498241 CTCATCGGGATATGGTGTACATG 58.502 47.826 0.00 0.00 40.82 3.21
527 528 3.901222 TCATCGGGATATGGTGTACATGT 59.099 43.478 2.69 2.69 40.82 3.21
528 529 3.744238 TCGGGATATGGTGTACATGTG 57.256 47.619 9.11 0.00 40.82 3.21
529 530 3.035363 TCGGGATATGGTGTACATGTGT 58.965 45.455 9.11 0.00 40.82 3.72
530 531 3.130633 CGGGATATGGTGTACATGTGTG 58.869 50.000 9.11 0.00 40.82 3.82
531 532 3.431626 CGGGATATGGTGTACATGTGTGT 60.432 47.826 9.11 0.00 40.82 3.72
532 533 4.127171 GGGATATGGTGTACATGTGTGTC 58.873 47.826 9.11 0.00 40.82 3.67
533 534 4.127171 GGATATGGTGTACATGTGTGTCC 58.873 47.826 9.11 6.44 40.82 4.02
534 535 4.383661 GGATATGGTGTACATGTGTGTCCA 60.384 45.833 9.11 11.83 40.82 4.02
535 536 3.719268 ATGGTGTACATGTGTGTCCAT 57.281 42.857 9.11 13.49 38.70 3.41
536 537 4.835284 ATGGTGTACATGTGTGTCCATA 57.165 40.909 18.27 0.00 38.70 2.74
537 538 4.200838 TGGTGTACATGTGTGTCCATAG 57.799 45.455 9.11 0.00 39.77 2.23
538 539 3.055458 TGGTGTACATGTGTGTCCATAGG 60.055 47.826 9.11 0.00 39.77 2.57
539 540 3.531538 GTGTACATGTGTGTCCATAGGG 58.468 50.000 9.11 0.00 39.77 3.53
540 541 2.503765 TGTACATGTGTGTCCATAGGGG 59.496 50.000 9.11 0.00 39.77 4.79
541 542 0.255890 ACATGTGTGTCCATAGGGGC 59.744 55.000 0.00 0.00 40.08 5.80
542 543 0.815213 CATGTGTGTCCATAGGGGCG 60.815 60.000 0.00 0.00 43.76 6.13
543 544 0.980754 ATGTGTGTCCATAGGGGCGA 60.981 55.000 0.00 0.00 43.76 5.54
544 545 1.144057 GTGTGTCCATAGGGGCGAG 59.856 63.158 0.00 0.00 43.76 5.03
545 546 1.305802 TGTGTCCATAGGGGCGAGT 60.306 57.895 0.00 0.00 43.76 4.18
546 547 1.144057 GTGTCCATAGGGGCGAGTG 59.856 63.158 0.00 0.00 43.76 3.51
547 548 1.305802 TGTCCATAGGGGCGAGTGT 60.306 57.895 0.00 0.00 43.76 3.55
548 549 1.144057 GTCCATAGGGGCGAGTGTG 59.856 63.158 0.00 0.00 36.21 3.82
549 550 1.305802 TCCATAGGGGCGAGTGTGT 60.306 57.895 0.00 0.00 36.21 3.72
550 551 0.907704 TCCATAGGGGCGAGTGTGTT 60.908 55.000 0.00 0.00 36.21 3.32
551 552 0.744414 CCATAGGGGCGAGTGTGTTG 60.744 60.000 0.00 0.00 0.00 3.33
552 553 1.078426 ATAGGGGCGAGTGTGTTGC 60.078 57.895 0.00 0.00 34.28 4.17
553 554 2.852495 ATAGGGGCGAGTGTGTTGCG 62.852 60.000 0.00 0.00 36.22 4.85
557 558 3.399770 GCGAGTGTGTTGCGCGTA 61.400 61.111 8.43 0.00 41.37 4.42
558 559 2.726691 GCGAGTGTGTTGCGCGTAT 61.727 57.895 8.43 0.00 41.37 3.06
559 560 1.407721 GCGAGTGTGTTGCGCGTATA 61.408 55.000 8.43 0.00 41.37 1.47
560 561 1.197055 CGAGTGTGTTGCGCGTATAT 58.803 50.000 8.43 0.00 0.00 0.86
561 562 1.072154 CGAGTGTGTTGCGCGTATATG 60.072 52.381 8.43 0.00 0.00 1.78
562 563 2.190161 GAGTGTGTTGCGCGTATATGA 58.810 47.619 8.43 0.00 0.00 2.15
563 564 2.193447 AGTGTGTTGCGCGTATATGAG 58.807 47.619 8.43 0.00 0.00 2.90
564 565 0.927537 TGTGTTGCGCGTATATGAGC 59.072 50.000 13.18 13.18 35.03 4.26
565 566 0.927537 GTGTTGCGCGTATATGAGCA 59.072 50.000 18.06 18.06 43.02 4.26
566 567 0.927537 TGTTGCGCGTATATGAGCAC 59.072 50.000 21.12 16.20 44.40 4.40
567 568 0.927537 GTTGCGCGTATATGAGCACA 59.072 50.000 21.12 10.99 44.40 4.57
568 569 1.526887 GTTGCGCGTATATGAGCACAT 59.473 47.619 21.12 1.31 44.40 3.21
569 570 1.139163 TGCGCGTATATGAGCACATG 58.861 50.000 18.06 0.00 39.80 3.21
570 571 0.179240 GCGCGTATATGAGCACATGC 60.179 55.000 14.91 0.00 42.49 4.06
580 581 3.171987 GCACATGCGTCTCTGTGG 58.828 61.111 5.00 0.00 42.37 4.17
581 582 1.374631 GCACATGCGTCTCTGTGGA 60.375 57.895 5.00 0.00 42.37 4.02
582 583 0.950555 GCACATGCGTCTCTGTGGAA 60.951 55.000 5.00 0.00 42.37 3.53
583 584 1.511850 CACATGCGTCTCTGTGGAAA 58.488 50.000 0.00 0.00 39.24 3.13
584 585 1.872952 CACATGCGTCTCTGTGGAAAA 59.127 47.619 0.00 0.00 39.24 2.29
585 586 2.290367 CACATGCGTCTCTGTGGAAAAA 59.710 45.455 0.00 0.00 39.24 1.94
610 611 4.297071 GCATGCATGCGCTAACTG 57.703 55.556 33.99 4.73 44.67 3.16
611 612 1.942712 GCATGCATGCGCTAACTGC 60.943 57.895 33.99 11.75 44.67 4.40
612 613 1.298863 CATGCATGCGCTAACTGCC 60.299 57.895 14.93 0.00 39.64 4.85
613 614 2.484062 ATGCATGCGCTAACTGCCC 61.484 57.895 14.09 0.00 39.64 5.36
614 615 4.241999 GCATGCGCTAACTGCCCG 62.242 66.667 9.73 0.00 38.78 6.13
615 616 2.819595 CATGCGCTAACTGCCCGT 60.820 61.111 9.73 0.00 38.78 5.28
616 617 2.046314 ATGCGCTAACTGCCCGTT 60.046 55.556 9.73 0.00 38.78 4.44
617 618 2.106683 ATGCGCTAACTGCCCGTTC 61.107 57.895 9.73 0.00 38.78 3.95
618 619 2.434359 GCGCTAACTGCCCGTTCT 60.434 61.111 0.00 0.00 38.78 3.01
619 620 2.453638 GCGCTAACTGCCCGTTCTC 61.454 63.158 0.00 0.00 38.78 2.87
620 621 1.810030 CGCTAACTGCCCGTTCTCC 60.810 63.158 0.00 0.00 38.78 3.71
621 622 1.597461 GCTAACTGCCCGTTCTCCT 59.403 57.895 0.00 0.00 37.05 3.69
622 623 0.741221 GCTAACTGCCCGTTCTCCTG 60.741 60.000 0.00 0.00 37.05 3.86
623 624 0.608640 CTAACTGCCCGTTCTCCTGT 59.391 55.000 0.00 0.00 37.05 4.00
624 625 1.822990 CTAACTGCCCGTTCTCCTGTA 59.177 52.381 0.00 0.00 37.05 2.74
625 626 0.320697 AACTGCCCGTTCTCCTGTAC 59.679 55.000 0.00 0.00 0.00 2.90
626 627 1.153823 CTGCCCGTTCTCCTGTACG 60.154 63.158 0.00 0.00 36.85 3.67
627 628 1.874345 CTGCCCGTTCTCCTGTACGT 61.874 60.000 0.00 0.00 35.64 3.57
628 629 1.291272 GCCCGTTCTCCTGTACGTT 59.709 57.895 0.00 0.00 35.64 3.99
629 630 1.012486 GCCCGTTCTCCTGTACGTTG 61.012 60.000 0.00 0.00 35.64 4.10
630 631 0.316204 CCCGTTCTCCTGTACGTTGT 59.684 55.000 0.00 0.00 35.64 3.32
631 632 1.269936 CCCGTTCTCCTGTACGTTGTT 60.270 52.381 0.00 0.00 35.64 2.83
632 633 1.790623 CCGTTCTCCTGTACGTTGTTG 59.209 52.381 0.00 0.00 35.64 3.33
633 634 1.790623 CGTTCTCCTGTACGTTGTTGG 59.209 52.381 0.00 0.00 33.34 3.77
645 646 0.030235 GTTGTTGGCTTGTTCGTCCC 59.970 55.000 0.00 0.00 0.00 4.46
664 665 1.136252 CCTATATGAACATGCACGCGC 60.136 52.381 5.73 0.00 39.24 6.86
701 702 0.258484 TCCATTCCACGCATCCCATT 59.742 50.000 0.00 0.00 0.00 3.16
773 775 2.729028 AACCTGGCCATGTACATACC 57.271 50.000 14.55 16.67 0.00 2.73
785 787 6.373216 GCCATGTACATACCTGAAAACTAACA 59.627 38.462 8.32 0.00 0.00 2.41
813 815 3.386078 GCTCCAGAGTCCAGACATAATCA 59.614 47.826 0.00 0.00 0.00 2.57
891 894 2.729028 ACAACCTTTGGCACTAGTGT 57.271 45.000 23.44 0.00 34.12 3.55
965 973 1.526225 GCTCCTACGGGAAATGGCC 60.526 63.158 0.00 0.00 41.69 5.36
973 981 5.014755 TCCTACGGGAAATGGCCATATAATT 59.985 40.000 21.15 9.70 38.93 1.40
1277 1299 2.981560 GCTCCCGACCGTGTTCGTA 61.982 63.158 0.00 0.00 37.29 3.43
1358 1380 1.202604 CCGTATCCACCCACCATACAC 60.203 57.143 0.00 0.00 0.00 2.90
1685 1710 2.046285 GGGTTTCACCATGGCCGAG 61.046 63.158 13.04 0.00 41.02 4.63
2013 2041 8.738199 TGTTCACGAACTAATTAACAGACTAG 57.262 34.615 11.01 0.00 41.67 2.57
2014 2042 8.355169 TGTTCACGAACTAATTAACAGACTAGT 58.645 33.333 11.01 0.00 41.67 2.57
2015 2043 9.831737 GTTCACGAACTAATTAACAGACTAGTA 57.168 33.333 0.00 0.00 38.25 1.82
2043 2071 2.116366 CTTAAACAACACTTGCGCACC 58.884 47.619 11.12 0.00 0.00 5.01
2094 7194 1.082679 CGTCAGCAGATGCACTCCAG 61.083 60.000 7.68 0.00 45.16 3.86
2421 7521 1.179814 AGCGGTTCGAGAACTCCACT 61.180 55.000 14.62 5.64 40.94 4.00
2460 7560 3.177487 GGACTTCGAGTTCATACCGTTC 58.823 50.000 0.00 0.00 0.00 3.95
2463 7563 1.167851 TCGAGTTCATACCGTTCGGT 58.832 50.000 20.39 20.39 41.93 4.69
2670 7770 6.624423 TGTTCGTATAAAGGTGTAGGTTCTC 58.376 40.000 0.00 0.00 0.00 2.87
2691 7792 4.392047 TCTTTCGAAAAGGAGGGTTTACC 58.608 43.478 12.41 0.00 40.67 2.85
2718 7825 5.439721 AGCCTCTGCATAATAAACATGTGA 58.560 37.500 0.00 0.00 41.13 3.58
2743 7850 2.405892 AGTTGCTTTGCATCGTCAAC 57.594 45.000 11.34 11.34 38.76 3.18
2768 7875 4.055360 TGACGAGTTTGTCCAATGTACTG 58.945 43.478 0.00 0.00 38.11 2.74
2771 7878 2.488153 GAGTTTGTCCAATGTACTGCCC 59.512 50.000 0.00 0.00 0.00 5.36
2779 7886 2.286833 CCAATGTACTGCCCGTTTATCG 59.713 50.000 0.00 0.00 39.52 2.92
2781 7888 2.747396 TGTACTGCCCGTTTATCGTT 57.253 45.000 0.00 0.00 37.94 3.85
2805 7912 9.237846 GTTACTTGAATAAAATAAGCATGAGGC 57.762 33.333 0.00 0.00 45.30 4.70
2822 7929 4.522114 TGAGGCATATTTCATGAAACCGA 58.478 39.130 22.71 11.71 32.51 4.69
2823 7930 5.132502 TGAGGCATATTTCATGAAACCGAT 58.867 37.500 22.71 13.36 32.51 4.18
2827 7934 7.596494 AGGCATATTTCATGAAACCGATTATG 58.404 34.615 22.71 22.82 32.51 1.90
2836 7943 6.597672 TCATGAAACCGATTATGTAAGTTGCT 59.402 34.615 0.00 0.00 0.00 3.91
2838 7945 7.209471 TGAAACCGATTATGTAAGTTGCTTT 57.791 32.000 0.00 0.00 0.00 3.51
2840 7947 8.231837 TGAAACCGATTATGTAAGTTGCTTTAC 58.768 33.333 0.00 0.00 34.78 2.01
2845 7953 9.400638 CCGATTATGTAAGTTGCTTTACAAAAA 57.599 29.630 11.23 9.66 44.21 1.94
2869 7977 8.955061 AATTCATTGTAAGTCGATTTTGTCTG 57.045 30.769 0.00 0.00 0.00 3.51
2870 7978 6.480524 TCATTGTAAGTCGATTTTGTCTGG 57.519 37.500 0.00 0.00 0.00 3.86
2871 7979 5.411361 TCATTGTAAGTCGATTTTGTCTGGG 59.589 40.000 0.00 0.00 0.00 4.45
2880 7995 1.698506 TTTTGTCTGGGCCGTGATTT 58.301 45.000 0.00 0.00 0.00 2.17
2919 8622 2.595750 TGTCCCGGTCATTGGATTTT 57.404 45.000 0.00 0.00 32.20 1.82
2920 8623 2.883026 TGTCCCGGTCATTGGATTTTT 58.117 42.857 0.00 0.00 32.20 1.94
2948 8651 0.594110 TTTTGCGAACAATCCCGGTC 59.406 50.000 0.00 0.00 35.21 4.79
2949 8652 0.535328 TTTGCGAACAATCCCGGTCA 60.535 50.000 0.00 0.00 35.21 4.02
2951 8654 0.322098 TGCGAACAATCCCGGTCATT 60.322 50.000 0.00 0.00 0.00 2.57
2952 8655 0.098728 GCGAACAATCCCGGTCATTG 59.901 55.000 17.77 17.77 37.29 2.82
2953 8656 0.732571 CGAACAATCCCGGTCATTGG 59.267 55.000 21.50 8.78 35.82 3.16
2995 9959 1.557371 CCTCTCTTCCTTCTCCAACCC 59.443 57.143 0.00 0.00 0.00 4.11
3011 9975 3.038280 CAACCCAACCCCTTCTTTTTCT 58.962 45.455 0.00 0.00 0.00 2.52
3072 10036 2.169769 CCGATGGTAGTCCCTTGCTTTA 59.830 50.000 0.00 0.00 0.00 1.85
3087 10051 2.159043 TGCTTTAATCTCTCCCTCGCAG 60.159 50.000 0.00 0.00 0.00 5.18
3093 10057 2.043953 TCTCCCTCGCAGCTAGCA 60.044 61.111 18.83 0.00 46.13 3.49
3148 10112 2.457598 AGATTGGAAGACTCGTAGCCA 58.542 47.619 0.00 0.00 0.00 4.75
3192 10172 0.524862 GTCACGACCGAGGAGCTTAA 59.475 55.000 0.00 0.00 0.00 1.85
3201 10181 4.756502 ACCGAGGAGCTTAATTTCAGTAC 58.243 43.478 0.00 0.00 0.00 2.73
3217 10197 0.392060 GTACGTGGCGGGGAAGATTT 60.392 55.000 0.00 0.00 0.00 2.17
3220 10200 0.676782 CGTGGCGGGGAAGATTTCTT 60.677 55.000 0.00 0.00 39.23 2.52
3280 10272 1.991339 ATCCATGGCTAGCAGCAGCA 61.991 55.000 18.24 4.95 44.75 4.41
3306 10298 4.273480 GGTTACAATGATGGATTGAGGACG 59.727 45.833 0.00 0.00 43.87 4.79
3334 10326 1.818419 TGGATATGGCATGGAGGTCA 58.182 50.000 10.98 0.00 0.00 4.02
3362 10354 4.539083 TGCGGTGTGGCTTGTCGT 62.539 61.111 0.00 0.00 0.00 4.34
3369 10361 1.355210 GTGGCTTGTCGTGTTGTGG 59.645 57.895 0.00 0.00 0.00 4.17
3402 10394 3.310774 GTGTCACAATCTTCCGATGATGG 59.689 47.826 0.00 0.00 0.00 3.51
3420 10412 4.952460 GATGGGTAACTATCGCTTTGGTA 58.048 43.478 0.00 0.00 45.13 3.25
3428 10420 5.012328 ACTATCGCTTTGGTAGAGAAAGG 57.988 43.478 0.00 0.00 36.23 3.11
3436 10428 3.040147 TGGTAGAGAAAGGCTTTGACG 57.960 47.619 18.79 0.00 0.00 4.35
3449 10441 3.047796 GCTTTGACGACTCGACTACAAA 58.952 45.455 5.20 10.38 0.00 2.83
3450 10442 3.121429 GCTTTGACGACTCGACTACAAAC 60.121 47.826 5.20 4.60 0.00 2.93
3451 10443 3.696281 TTGACGACTCGACTACAAACA 57.304 42.857 5.20 0.00 0.00 2.83
3457 10449 4.227538 CGACTCGACTACAAACAAGTGAT 58.772 43.478 0.00 0.00 0.00 3.06
3464 10456 8.185003 TCGACTACAAACAAGTGATCATATTG 57.815 34.615 17.46 17.46 0.00 1.90
3471 10463 9.733556 ACAAACAAGTGATCATATTGTACCTTA 57.266 29.630 22.30 0.00 36.18 2.69
3478 10470 8.432013 AGTGATCATATTGTACCTTAGCAATCA 58.568 33.333 0.00 0.00 36.75 2.57
3494 10486 4.946157 AGCAATCACTAAACCAATCTCCTG 59.054 41.667 0.00 0.00 0.00 3.86
3513 10505 3.021695 CTGGAGGTTACTGACGATACCA 58.978 50.000 0.00 0.00 33.02 3.25
3514 10506 3.433343 TGGAGGTTACTGACGATACCAA 58.567 45.455 0.00 0.00 33.02 3.67
3530 10522 1.272872 ACCAAAAGCATGATCAGCCCT 60.273 47.619 0.09 0.00 0.00 5.19
3536 10528 0.181114 GCATGATCAGCCCTACCACA 59.819 55.000 0.09 0.00 0.00 4.17
3539 10531 2.787473 TGATCAGCCCTACCACAAAG 57.213 50.000 0.00 0.00 0.00 2.77
3567 10559 0.662619 CTGCAAGCAACCGAAGAACA 59.337 50.000 0.00 0.00 0.00 3.18
3582 10574 6.042777 CCGAAGAACAAGCAAGAGTATGATA 58.957 40.000 0.00 0.00 0.00 2.15
3583 10575 6.535150 CCGAAGAACAAGCAAGAGTATGATAA 59.465 38.462 0.00 0.00 0.00 1.75
3672 10664 0.238289 GCATGGTCGTTGGACACAAG 59.762 55.000 0.00 0.00 45.28 3.16
3693 10685 4.690122 AGCGAAGTACACAAAGTTACAGT 58.310 39.130 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.966787 GCCCCAACCCTTGTCGCA 62.967 66.667 0.00 0.00 0.00 5.10
5 6 4.323477 TCGCCCCAACCCTTGTCG 62.323 66.667 0.00 0.00 0.00 4.35
6 7 2.359975 CTCGCCCCAACCCTTGTC 60.360 66.667 0.00 0.00 0.00 3.18
36 37 4.789075 GCCATTGCCGCTGTGCAG 62.789 66.667 0.00 0.00 43.21 4.41
274 275 2.263021 CCGTCGGGGAAACAAACCC 61.263 63.158 2.34 0.00 46.05 4.11
275 276 3.347168 CCGTCGGGGAAACAAACC 58.653 61.111 2.34 0.00 38.47 3.27
294 295 2.768344 ATGTCCTACCCTGGCCCG 60.768 66.667 0.00 0.00 0.00 6.13
295 296 1.692749 TCATGTCCTACCCTGGCCC 60.693 63.158 0.00 0.00 0.00 5.80
296 297 1.832912 CTCATGTCCTACCCTGGCC 59.167 63.158 0.00 0.00 0.00 5.36
297 298 1.147153 GCTCATGTCCTACCCTGGC 59.853 63.158 0.00 0.00 0.00 4.85
298 299 0.467384 CTGCTCATGTCCTACCCTGG 59.533 60.000 0.00 0.00 0.00 4.45
299 300 0.467384 CCTGCTCATGTCCTACCCTG 59.533 60.000 0.00 0.00 0.00 4.45
300 301 1.341156 GCCTGCTCATGTCCTACCCT 61.341 60.000 0.00 0.00 0.00 4.34
301 302 1.147153 GCCTGCTCATGTCCTACCC 59.853 63.158 0.00 0.00 0.00 3.69
302 303 1.227380 CGCCTGCTCATGTCCTACC 60.227 63.158 0.00 0.00 0.00 3.18
303 304 1.884926 GCGCCTGCTCATGTCCTAC 60.885 63.158 0.00 0.00 38.39 3.18
304 305 2.501128 GCGCCTGCTCATGTCCTA 59.499 61.111 0.00 0.00 38.39 2.94
305 306 4.479993 GGCGCCTGCTCATGTCCT 62.480 66.667 22.15 0.00 42.25 3.85
306 307 4.783621 TGGCGCCTGCTCATGTCC 62.784 66.667 29.70 0.00 42.25 4.02
307 308 3.503363 GTGGCGCCTGCTCATGTC 61.503 66.667 29.70 0.00 42.25 3.06
327 328 4.702081 GAGACACGCGCAGACGGT 62.702 66.667 5.73 0.00 40.57 4.83
328 329 3.898627 AAGAGACACGCGCAGACGG 62.899 63.158 5.73 0.00 40.57 4.79
329 330 2.429236 AAGAGACACGCGCAGACG 60.429 61.111 5.73 0.00 44.07 4.18
330 331 2.429351 CGAAGAGACACGCGCAGAC 61.429 63.158 5.73 0.00 0.00 3.51
331 332 2.126850 CGAAGAGACACGCGCAGA 60.127 61.111 5.73 0.00 0.00 4.26
332 333 3.175240 CCGAAGAGACACGCGCAG 61.175 66.667 5.73 0.55 0.00 5.18
337 338 4.717629 TGCGGCCGAAGAGACACG 62.718 66.667 33.48 0.00 0.00 4.49
338 339 1.959226 TTTGCGGCCGAAGAGACAC 60.959 57.895 33.48 9.04 0.00 3.67
339 340 1.959226 GTTTGCGGCCGAAGAGACA 60.959 57.895 33.48 13.85 0.00 3.41
340 341 1.627550 GAGTTTGCGGCCGAAGAGAC 61.628 60.000 33.48 18.51 0.00 3.36
341 342 1.374252 GAGTTTGCGGCCGAAGAGA 60.374 57.895 33.48 5.40 0.00 3.10
342 343 2.730672 CGAGTTTGCGGCCGAAGAG 61.731 63.158 33.48 8.72 0.00 2.85
343 344 2.736995 CGAGTTTGCGGCCGAAGA 60.737 61.111 33.48 12.28 0.00 2.87
344 345 3.788766 CCGAGTTTGCGGCCGAAG 61.789 66.667 33.48 5.66 45.38 3.79
351 352 2.050442 GTTTGGGCCGAGTTTGCG 60.050 61.111 0.00 0.00 0.00 4.85
352 353 0.597377 CAAGTTTGGGCCGAGTTTGC 60.597 55.000 0.00 0.00 0.00 3.68
353 354 0.031994 CCAAGTTTGGGCCGAGTTTG 59.968 55.000 0.00 5.73 44.70 2.93
354 355 2.425562 CCAAGTTTGGGCCGAGTTT 58.574 52.632 0.00 0.00 44.70 2.66
355 356 4.174305 CCAAGTTTGGGCCGAGTT 57.826 55.556 0.00 0.00 44.70 3.01
363 364 1.545204 CCATTTTGGGCCCAAGTTTGG 60.545 52.381 35.02 33.05 40.01 3.28
364 365 1.894881 CCATTTTGGGCCCAAGTTTG 58.105 50.000 35.02 29.36 37.24 2.93
375 376 0.878416 TCGCTTTCGACCCATTTTGG 59.122 50.000 0.00 0.00 40.21 3.28
376 377 2.287308 TGTTCGCTTTCGACCCATTTTG 60.287 45.455 0.00 0.00 45.43 2.44
377 378 1.950909 TGTTCGCTTTCGACCCATTTT 59.049 42.857 0.00 0.00 45.43 1.82
378 379 1.535462 CTGTTCGCTTTCGACCCATTT 59.465 47.619 0.00 0.00 45.43 2.32
379 380 1.156736 CTGTTCGCTTTCGACCCATT 58.843 50.000 0.00 0.00 45.43 3.16
380 381 0.320374 TCTGTTCGCTTTCGACCCAT 59.680 50.000 0.00 0.00 45.43 4.00
381 382 0.105224 TTCTGTTCGCTTTCGACCCA 59.895 50.000 0.00 0.00 45.43 4.51
382 383 1.223187 TTTCTGTTCGCTTTCGACCC 58.777 50.000 0.00 0.00 45.43 4.46
383 384 2.636519 GTTTTCTGTTCGCTTTCGACC 58.363 47.619 0.00 0.00 45.43 4.79
384 385 2.287079 CGTTTTCTGTTCGCTTTCGAC 58.713 47.619 0.00 0.00 45.43 4.20
385 386 1.259507 CCGTTTTCTGTTCGCTTTCGA 59.740 47.619 0.00 0.00 43.89 3.71
386 387 1.259507 TCCGTTTTCTGTTCGCTTTCG 59.740 47.619 0.00 0.00 0.00 3.46
387 388 2.636519 GTCCGTTTTCTGTTCGCTTTC 58.363 47.619 0.00 0.00 0.00 2.62
388 389 1.004292 CGTCCGTTTTCTGTTCGCTTT 60.004 47.619 0.00 0.00 0.00 3.51
389 390 0.580104 CGTCCGTTTTCTGTTCGCTT 59.420 50.000 0.00 0.00 0.00 4.68
390 391 0.249155 TCGTCCGTTTTCTGTTCGCT 60.249 50.000 0.00 0.00 0.00 4.93
391 392 0.111398 GTCGTCCGTTTTCTGTTCGC 60.111 55.000 0.00 0.00 0.00 4.70
392 393 0.158096 CGTCGTCCGTTTTCTGTTCG 59.842 55.000 0.00 0.00 0.00 3.95
393 394 0.505655 CCGTCGTCCGTTTTCTGTTC 59.494 55.000 0.00 0.00 33.66 3.18
394 395 0.179103 ACCGTCGTCCGTTTTCTGTT 60.179 50.000 0.00 0.00 33.66 3.16
395 396 0.595825 GACCGTCGTCCGTTTTCTGT 60.596 55.000 0.00 0.00 32.40 3.41
396 397 2.139210 GACCGTCGTCCGTTTTCTG 58.861 57.895 0.00 0.00 32.40 3.02
397 398 4.641777 GACCGTCGTCCGTTTTCT 57.358 55.556 0.00 0.00 32.40 2.52
405 406 3.759828 CGCAAACGGACCGTCGTC 61.760 66.667 22.00 10.85 43.07 4.20
420 421 2.480555 CTTCCAATGTGCGTCCGC 59.519 61.111 4.42 4.42 42.35 5.54
421 422 3.039202 GCCTTCCAATGTGCGTCCG 62.039 63.158 0.00 0.00 0.00 4.79
422 423 2.700773 GGCCTTCCAATGTGCGTCC 61.701 63.158 0.00 0.00 0.00 4.79
423 424 1.675641 AGGCCTTCCAATGTGCGTC 60.676 57.895 0.00 0.00 33.74 5.19
424 425 1.973281 CAGGCCTTCCAATGTGCGT 60.973 57.895 0.00 0.00 33.74 5.24
425 426 2.879907 CAGGCCTTCCAATGTGCG 59.120 61.111 0.00 0.00 33.74 5.34
426 427 1.941999 GAGCAGGCCTTCCAATGTGC 61.942 60.000 0.00 0.70 31.92 4.57
427 428 0.323178 AGAGCAGGCCTTCCAATGTG 60.323 55.000 0.00 0.00 33.74 3.21
428 429 0.323178 CAGAGCAGGCCTTCCAATGT 60.323 55.000 0.00 0.00 33.74 2.71
429 430 0.323178 ACAGAGCAGGCCTTCCAATG 60.323 55.000 0.00 0.00 33.74 2.82
430 431 0.034670 GACAGAGCAGGCCTTCCAAT 60.035 55.000 0.00 0.00 33.74 3.16
431 432 1.376466 GACAGAGCAGGCCTTCCAA 59.624 57.895 0.00 0.00 33.74 3.53
432 433 2.596851 GGACAGAGCAGGCCTTCCA 61.597 63.158 13.16 0.00 33.74 3.53
433 434 2.270527 GGACAGAGCAGGCCTTCC 59.729 66.667 0.00 1.86 0.00 3.46
434 435 2.125350 CGGACAGAGCAGGCCTTC 60.125 66.667 0.00 0.00 0.00 3.46
435 436 2.056906 AAACGGACAGAGCAGGCCTT 62.057 55.000 0.00 0.00 0.00 4.35
436 437 1.192146 TAAACGGACAGAGCAGGCCT 61.192 55.000 0.00 0.00 0.00 5.19
437 438 0.107654 ATAAACGGACAGAGCAGGCC 60.108 55.000 0.00 0.00 0.00 5.19
438 439 1.291132 GATAAACGGACAGAGCAGGC 58.709 55.000 0.00 0.00 0.00 4.85
439 440 1.473434 GGGATAAACGGACAGAGCAGG 60.473 57.143 0.00 0.00 0.00 4.85
440 441 1.802880 CGGGATAAACGGACAGAGCAG 60.803 57.143 0.00 0.00 0.00 4.24
441 442 0.174845 CGGGATAAACGGACAGAGCA 59.825 55.000 0.00 0.00 0.00 4.26
442 443 0.458669 TCGGGATAAACGGACAGAGC 59.541 55.000 0.00 0.00 0.00 4.09
443 444 2.537401 GTTCGGGATAAACGGACAGAG 58.463 52.381 0.00 0.00 39.57 3.35
444 445 1.135315 CGTTCGGGATAAACGGACAGA 60.135 52.381 0.70 0.00 44.27 3.41
445 446 1.274596 CGTTCGGGATAAACGGACAG 58.725 55.000 0.70 0.00 44.27 3.51
446 447 3.422122 CGTTCGGGATAAACGGACA 57.578 52.632 0.70 0.00 44.27 4.02
451 452 0.024111 CGCGTTCGTTCGGGATAAAC 59.976 55.000 0.00 0.00 44.40 2.01
452 453 1.077645 CCGCGTTCGTTCGGGATAAA 61.078 55.000 4.92 0.00 44.40 1.40
453 454 1.516821 CCGCGTTCGTTCGGGATAA 60.517 57.895 4.92 0.00 44.40 1.75
454 455 2.102749 CCGCGTTCGTTCGGGATA 59.897 61.111 4.92 0.00 44.40 2.59
470 471 4.176752 GACCCATCCTGTCCGCCC 62.177 72.222 0.00 0.00 0.00 6.13
471 472 4.176752 GGACCCATCCTGTCCGCC 62.177 72.222 0.00 0.00 42.63 6.13
475 476 0.625849 AATGTGGGACCCATCCTGTC 59.374 55.000 18.51 2.66 45.46 3.51
476 477 0.332632 CAATGTGGGACCCATCCTGT 59.667 55.000 18.51 0.00 45.46 4.00
477 478 0.625316 TCAATGTGGGACCCATCCTG 59.375 55.000 18.51 13.81 45.46 3.86
478 479 1.381867 TTCAATGTGGGACCCATCCT 58.618 50.000 18.51 1.11 45.46 3.24
479 480 2.459555 ATTCAATGTGGGACCCATCC 57.540 50.000 18.51 5.19 45.42 3.51
480 481 3.118665 CCAAATTCAATGTGGGACCCATC 60.119 47.826 18.51 11.18 35.28 3.51
481 482 2.839425 CCAAATTCAATGTGGGACCCAT 59.161 45.455 18.51 0.00 35.28 4.00
482 483 2.255406 CCAAATTCAATGTGGGACCCA 58.745 47.619 9.95 9.95 0.00 4.51
483 484 1.066215 GCCAAATTCAATGTGGGACCC 60.066 52.381 8.81 2.45 32.71 4.46
484 485 1.066215 GGCCAAATTCAATGTGGGACC 60.066 52.381 8.81 0.00 32.71 4.46
485 486 1.901833 AGGCCAAATTCAATGTGGGAC 59.098 47.619 8.81 0.00 32.71 4.46
486 487 2.178580 GAGGCCAAATTCAATGTGGGA 58.821 47.619 8.81 0.00 32.71 4.37
487 488 1.901159 TGAGGCCAAATTCAATGTGGG 59.099 47.619 8.81 0.00 32.71 4.61
488 489 3.735820 CGATGAGGCCAAATTCAATGTGG 60.736 47.826 5.01 1.55 35.39 4.17
489 490 3.441163 CGATGAGGCCAAATTCAATGTG 58.559 45.455 5.01 0.00 0.00 3.21
490 491 2.428171 CCGATGAGGCCAAATTCAATGT 59.572 45.455 5.01 0.00 0.00 2.71
491 492 2.223876 CCCGATGAGGCCAAATTCAATG 60.224 50.000 5.01 0.00 39.21 2.82
492 493 2.034124 CCCGATGAGGCCAAATTCAAT 58.966 47.619 5.01 0.00 39.21 2.57
493 494 1.005332 TCCCGATGAGGCCAAATTCAA 59.995 47.619 5.01 0.00 39.21 2.69
494 495 0.623194 TCCCGATGAGGCCAAATTCA 59.377 50.000 5.01 0.00 39.21 2.57
495 496 1.986882 ATCCCGATGAGGCCAAATTC 58.013 50.000 5.01 0.00 39.21 2.17
496 497 3.424703 CATATCCCGATGAGGCCAAATT 58.575 45.455 5.01 0.00 39.21 1.82
497 498 2.291153 CCATATCCCGATGAGGCCAAAT 60.291 50.000 5.01 0.00 39.21 2.32
498 499 1.073763 CCATATCCCGATGAGGCCAAA 59.926 52.381 5.01 0.00 39.21 3.28
499 500 0.692476 CCATATCCCGATGAGGCCAA 59.308 55.000 5.01 0.00 39.21 4.52
500 501 0.473694 ACCATATCCCGATGAGGCCA 60.474 55.000 5.01 0.00 39.21 5.36
501 502 0.036010 CACCATATCCCGATGAGGCC 60.036 60.000 0.00 0.00 39.21 5.19
502 503 0.687354 ACACCATATCCCGATGAGGC 59.313 55.000 0.00 0.00 39.21 4.70
503 504 2.897326 TGTACACCATATCCCGATGAGG 59.103 50.000 0.00 0.00 40.63 3.86
504 505 4.021104 ACATGTACACCATATCCCGATGAG 60.021 45.833 0.00 0.00 30.71 2.90
505 506 3.901222 ACATGTACACCATATCCCGATGA 59.099 43.478 0.00 0.00 30.71 2.92
506 507 3.996363 CACATGTACACCATATCCCGATG 59.004 47.826 0.00 0.00 30.71 3.84
507 508 3.646162 ACACATGTACACCATATCCCGAT 59.354 43.478 0.00 0.00 30.71 4.18
508 509 3.035363 ACACATGTACACCATATCCCGA 58.965 45.455 0.00 0.00 30.71 5.14
509 510 3.130633 CACACATGTACACCATATCCCG 58.869 50.000 0.00 0.00 30.71 5.14
510 511 4.127171 GACACACATGTACACCATATCCC 58.873 47.826 0.00 0.00 39.95 3.85
511 512 4.127171 GGACACACATGTACACCATATCC 58.873 47.826 0.00 0.00 39.78 2.59
512 513 4.765273 TGGACACACATGTACACCATATC 58.235 43.478 0.00 0.00 45.28 1.63
513 514 4.835284 TGGACACACATGTACACCATAT 57.165 40.909 0.00 0.00 45.28 1.78
520 521 2.745152 GCCCCTATGGACACACATGTAC 60.745 54.545 0.00 0.00 39.95 2.90
521 522 1.488812 GCCCCTATGGACACACATGTA 59.511 52.381 0.00 0.00 39.95 2.29
522 523 0.255890 GCCCCTATGGACACACATGT 59.744 55.000 0.00 0.00 43.71 3.21
523 524 0.815213 CGCCCCTATGGACACACATG 60.815 60.000 0.00 0.00 35.39 3.21
524 525 0.980754 TCGCCCCTATGGACACACAT 60.981 55.000 0.00 0.00 35.39 3.21
525 526 1.610967 TCGCCCCTATGGACACACA 60.611 57.895 0.00 0.00 35.39 3.72
526 527 1.144057 CTCGCCCCTATGGACACAC 59.856 63.158 0.00 0.00 35.39 3.82
527 528 1.305802 ACTCGCCCCTATGGACACA 60.306 57.895 0.00 0.00 35.39 3.72
528 529 1.144057 CACTCGCCCCTATGGACAC 59.856 63.158 0.00 0.00 35.39 3.67
529 530 1.305802 ACACTCGCCCCTATGGACA 60.306 57.895 0.00 0.00 35.39 4.02
530 531 1.144057 CACACTCGCCCCTATGGAC 59.856 63.158 0.00 0.00 35.39 4.02
531 532 0.907704 AACACACTCGCCCCTATGGA 60.908 55.000 0.00 0.00 35.39 3.41
532 533 0.744414 CAACACACTCGCCCCTATGG 60.744 60.000 0.00 0.00 37.09 2.74
533 534 1.369091 GCAACACACTCGCCCCTATG 61.369 60.000 0.00 0.00 0.00 2.23
534 535 1.078426 GCAACACACTCGCCCCTAT 60.078 57.895 0.00 0.00 0.00 2.57
535 536 2.345991 GCAACACACTCGCCCCTA 59.654 61.111 0.00 0.00 0.00 3.53
536 537 4.988598 CGCAACACACTCGCCCCT 62.989 66.667 0.00 0.00 0.00 4.79
540 541 1.407721 TATACGCGCAACACACTCGC 61.408 55.000 5.73 0.00 44.76 5.03
541 542 1.072154 CATATACGCGCAACACACTCG 60.072 52.381 5.73 0.00 0.00 4.18
542 543 2.190161 TCATATACGCGCAACACACTC 58.810 47.619 5.73 0.00 0.00 3.51
543 544 2.193447 CTCATATACGCGCAACACACT 58.807 47.619 5.73 0.00 0.00 3.55
544 545 1.332028 GCTCATATACGCGCAACACAC 60.332 52.381 5.73 0.00 0.00 3.82
545 546 0.927537 GCTCATATACGCGCAACACA 59.072 50.000 5.73 0.00 0.00 3.72
546 547 0.927537 TGCTCATATACGCGCAACAC 59.072 50.000 5.73 0.00 0.00 3.32
547 548 0.927537 GTGCTCATATACGCGCAACA 59.072 50.000 5.73 0.00 36.69 3.33
548 549 0.927537 TGTGCTCATATACGCGCAAC 59.072 50.000 5.73 0.00 42.90 4.17
549 550 3.354131 TGTGCTCATATACGCGCAA 57.646 47.368 5.73 0.00 42.90 4.85
551 552 0.179240 GCATGTGCTCATATACGCGC 60.179 55.000 5.73 0.00 38.21 6.86
552 553 0.091846 CGCATGTGCTCATATACGCG 59.908 55.000 14.14 14.14 36.79 6.01
553 554 1.125021 GACGCATGTGCTCATATACGC 59.875 52.381 6.08 7.88 39.32 4.42
554 555 2.658802 GAGACGCATGTGCTCATATACG 59.341 50.000 19.32 13.26 39.32 3.06
555 556 3.672397 CAGAGACGCATGTGCTCATATAC 59.328 47.826 23.43 5.56 39.32 1.47
556 557 3.319122 ACAGAGACGCATGTGCTCATATA 59.681 43.478 23.43 0.00 39.32 0.86
557 558 2.102084 ACAGAGACGCATGTGCTCATAT 59.898 45.455 23.43 11.62 39.32 1.78
558 559 1.478105 ACAGAGACGCATGTGCTCATA 59.522 47.619 23.43 0.00 39.32 2.15
559 560 0.248565 ACAGAGACGCATGTGCTCAT 59.751 50.000 23.43 13.60 39.32 2.90
560 561 0.668401 CACAGAGACGCATGTGCTCA 60.668 55.000 23.43 0.00 40.27 4.26
561 562 1.357258 CCACAGAGACGCATGTGCTC 61.357 60.000 17.58 17.58 44.35 4.26
562 563 1.375140 CCACAGAGACGCATGTGCT 60.375 57.895 6.08 4.49 44.35 4.40
563 564 0.950555 TTCCACAGAGACGCATGTGC 60.951 55.000 6.08 0.00 44.35 4.57
564 565 1.511850 TTTCCACAGAGACGCATGTG 58.488 50.000 4.30 4.30 45.10 3.21
565 566 2.254546 TTTTCCACAGAGACGCATGT 57.745 45.000 0.00 0.00 0.00 3.21
594 595 4.297071 GCAGTTAGCGCATGCATG 57.703 55.556 22.70 22.70 46.23 4.06
603 604 0.741221 CAGGAGAACGGGCAGTTAGC 60.741 60.000 2.22 0.00 44.35 3.09
604 605 0.608640 ACAGGAGAACGGGCAGTTAG 59.391 55.000 2.22 0.00 44.35 2.34
605 606 1.547372 GTACAGGAGAACGGGCAGTTA 59.453 52.381 2.22 0.00 44.35 2.24
607 608 1.874345 CGTACAGGAGAACGGGCAGT 61.874 60.000 0.00 0.00 35.51 4.40
608 609 1.153823 CGTACAGGAGAACGGGCAG 60.154 63.158 0.00 0.00 35.51 4.85
609 610 1.466025 AACGTACAGGAGAACGGGCA 61.466 55.000 0.00 0.00 43.25 5.36
610 611 1.012486 CAACGTACAGGAGAACGGGC 61.012 60.000 0.00 0.00 43.25 6.13
611 612 0.316204 ACAACGTACAGGAGAACGGG 59.684 55.000 0.00 0.00 43.25 5.28
612 613 1.790623 CAACAACGTACAGGAGAACGG 59.209 52.381 0.00 0.00 43.25 4.44
613 614 1.790623 CCAACAACGTACAGGAGAACG 59.209 52.381 0.00 0.00 44.47 3.95
614 615 1.529865 GCCAACAACGTACAGGAGAAC 59.470 52.381 0.00 0.00 0.00 3.01
615 616 1.414919 AGCCAACAACGTACAGGAGAA 59.585 47.619 0.00 0.00 0.00 2.87
616 617 1.045407 AGCCAACAACGTACAGGAGA 58.955 50.000 0.00 0.00 0.00 3.71
617 618 1.531149 CAAGCCAACAACGTACAGGAG 59.469 52.381 0.00 0.00 0.00 3.69
618 619 1.134340 ACAAGCCAACAACGTACAGGA 60.134 47.619 0.00 0.00 0.00 3.86
619 620 1.305201 ACAAGCCAACAACGTACAGG 58.695 50.000 0.00 0.00 0.00 4.00
620 621 2.598907 CGAACAAGCCAACAACGTACAG 60.599 50.000 0.00 0.00 0.00 2.74
621 622 1.328069 CGAACAAGCCAACAACGTACA 59.672 47.619 0.00 0.00 0.00 2.90
622 623 1.328374 ACGAACAAGCCAACAACGTAC 59.672 47.619 0.00 0.00 0.00 3.67
623 624 1.593933 GACGAACAAGCCAACAACGTA 59.406 47.619 0.00 0.00 32.88 3.57
624 625 0.375803 GACGAACAAGCCAACAACGT 59.624 50.000 0.00 0.00 35.31 3.99
625 626 0.316689 GGACGAACAAGCCAACAACG 60.317 55.000 0.00 0.00 0.00 4.10
626 627 0.030235 GGGACGAACAAGCCAACAAC 59.970 55.000 0.00 0.00 0.00 3.32
627 628 0.106918 AGGGACGAACAAGCCAACAA 60.107 50.000 0.00 0.00 0.00 2.83
628 629 0.759959 TAGGGACGAACAAGCCAACA 59.240 50.000 0.00 0.00 0.00 3.33
629 630 2.109425 ATAGGGACGAACAAGCCAAC 57.891 50.000 0.00 0.00 0.00 3.77
630 631 3.452990 TCATATAGGGACGAACAAGCCAA 59.547 43.478 0.00 0.00 0.00 4.52
631 632 3.035363 TCATATAGGGACGAACAAGCCA 58.965 45.455 0.00 0.00 0.00 4.75
632 633 3.746045 TCATATAGGGACGAACAAGCC 57.254 47.619 0.00 0.00 0.00 4.35
633 634 4.439057 TGTTCATATAGGGACGAACAAGC 58.561 43.478 0.00 0.00 43.40 4.01
645 646 1.136252 GGCGCGTGCATGTTCATATAG 60.136 52.381 24.18 0.00 45.35 1.31
664 665 3.628646 AAGCGTAGGCAAGCAGGGG 62.629 63.158 10.48 0.00 43.41 4.79
701 702 5.007626 CACTAGCTGTAAAGTTTCAGTGCAA 59.992 40.000 0.00 0.00 34.57 4.08
773 775 6.650807 TCTGGAGCAGTAATGTTAGTTTTCAG 59.349 38.462 0.00 0.00 32.61 3.02
785 787 2.763448 GTCTGGACTCTGGAGCAGTAAT 59.237 50.000 0.00 0.00 32.61 1.89
813 815 2.823147 GCTCATGCAAGGCGAGCT 60.823 61.111 18.25 0.00 46.86 4.09
965 973 7.169476 CCAGCGATCTGATCTGCTAATTATATG 59.831 40.741 25.25 16.16 42.95 1.78
973 981 0.316522 GCCAGCGATCTGATCTGCTA 59.683 55.000 25.25 0.00 42.95 3.49
1068 1084 4.810191 TCTTAAGAAGCTTGAGGAGGAC 57.190 45.455 2.10 0.00 0.00 3.85
1266 1288 1.135315 CGGACGATACGAACACGGT 59.865 57.895 0.00 0.00 0.00 4.83
1743 1768 1.103398 TAGGTCGTAAGGTAGCCCGC 61.103 60.000 0.00 0.00 35.12 6.13
1744 1769 0.665298 GTAGGTCGTAAGGTAGCCCG 59.335 60.000 0.00 0.00 35.12 6.13
1754 1779 1.028330 CCACCAGCTCGTAGGTCGTA 61.028 60.000 0.00 0.00 40.80 3.43
1973 2001 3.303990 CGTGAACAGAGTGAACAAATGGG 60.304 47.826 0.00 0.00 0.00 4.00
1974 2002 3.559655 TCGTGAACAGAGTGAACAAATGG 59.440 43.478 0.00 0.00 0.00 3.16
1975 2003 4.794248 TCGTGAACAGAGTGAACAAATG 57.206 40.909 0.00 0.00 0.00 2.32
1976 2004 4.876107 AGTTCGTGAACAGAGTGAACAAAT 59.124 37.500 14.61 0.00 43.47 2.32
1977 2005 4.250464 AGTTCGTGAACAGAGTGAACAAA 58.750 39.130 14.61 0.00 43.47 2.83
2013 2041 7.060633 CGCAAGTGTTGTTTAAGGATCAATTAC 59.939 37.037 0.00 0.00 0.00 1.89
2014 2042 7.081349 CGCAAGTGTTGTTTAAGGATCAATTA 58.919 34.615 0.00 0.00 0.00 1.40
2015 2043 5.920273 CGCAAGTGTTGTTTAAGGATCAATT 59.080 36.000 0.00 0.00 0.00 2.32
2016 2044 5.460646 CGCAAGTGTTGTTTAAGGATCAAT 58.539 37.500 0.00 0.00 0.00 2.57
2017 2045 4.791411 GCGCAAGTGTTGTTTAAGGATCAA 60.791 41.667 0.30 0.00 41.68 2.57
2018 2046 3.304391 GCGCAAGTGTTGTTTAAGGATCA 60.304 43.478 0.30 0.00 41.68 2.92
2019 2047 3.234386 GCGCAAGTGTTGTTTAAGGATC 58.766 45.455 0.30 0.00 41.68 3.36
2020 2048 2.621055 TGCGCAAGTGTTGTTTAAGGAT 59.379 40.909 8.16 0.00 41.68 3.24
2021 2049 2.017782 TGCGCAAGTGTTGTTTAAGGA 58.982 42.857 8.16 0.00 41.68 3.36
2022 2050 2.116366 GTGCGCAAGTGTTGTTTAAGG 58.884 47.619 14.00 0.00 41.68 2.69
2023 2051 2.116366 GGTGCGCAAGTGTTGTTTAAG 58.884 47.619 14.00 0.00 41.68 1.85
2024 2052 1.746220 AGGTGCGCAAGTGTTGTTTAA 59.254 42.857 14.00 0.00 41.68 1.52
2025 2053 1.384525 AGGTGCGCAAGTGTTGTTTA 58.615 45.000 14.00 0.00 41.68 2.01
2026 2054 0.530288 AAGGTGCGCAAGTGTTGTTT 59.470 45.000 14.00 0.00 41.68 2.83
2027 2055 1.064952 GTAAGGTGCGCAAGTGTTGTT 59.935 47.619 14.00 0.28 41.68 2.83
2028 2056 0.661020 GTAAGGTGCGCAAGTGTTGT 59.339 50.000 14.00 0.00 41.68 3.32
2029 2057 0.660488 TGTAAGGTGCGCAAGTGTTG 59.340 50.000 14.00 0.00 41.68 3.33
2030 2058 0.944386 CTGTAAGGTGCGCAAGTGTT 59.056 50.000 14.00 5.80 41.68 3.32
2031 2059 2.616969 CTGTAAGGTGCGCAAGTGT 58.383 52.632 14.00 0.00 41.68 3.55
2043 2071 1.936547 GCGCCAAAGAGATCCTGTAAG 59.063 52.381 0.00 0.00 0.00 2.34
2070 2098 1.153958 TGCATCTGCTGACGTCTCG 60.154 57.895 17.92 9.01 42.66 4.04
2094 7194 1.812922 CAGCTCTGACATCGCCCAC 60.813 63.158 0.00 0.00 0.00 4.61
2195 7295 2.731571 TAGGTCATGTCGGCCAGGC 61.732 63.158 1.26 1.26 0.00 4.85
2421 7521 2.273179 CGTCCCCTTGAGGTCGACA 61.273 63.158 18.91 0.00 34.18 4.35
2583 7683 2.396608 CCCATCTCCTCAGTCATGTCT 58.603 52.381 0.00 0.00 0.00 3.41
2670 7770 4.761235 GGTAAACCCTCCTTTTCGAAAG 57.239 45.455 10.98 5.63 0.00 2.62
2691 7792 4.973168 TGTTTATTATGCAGAGGCTAGGG 58.027 43.478 0.00 0.00 41.91 3.53
2694 7795 6.591001 TCACATGTTTATTATGCAGAGGCTA 58.409 36.000 0.00 0.00 41.91 3.93
2696 7797 5.756195 TCACATGTTTATTATGCAGAGGC 57.244 39.130 0.00 0.00 41.68 4.70
2698 7799 6.731164 TGCATCACATGTTTATTATGCAGAG 58.269 36.000 18.32 0.00 43.32 3.35
2699 7800 6.696441 TGCATCACATGTTTATTATGCAGA 57.304 33.333 18.32 2.62 43.32 4.26
2730 7837 0.584396 GTCACCGTTGACGATGCAAA 59.416 50.000 4.91 0.00 42.86 3.68
2743 7850 1.194547 CATTGGACAAACTCGTCACCG 59.805 52.381 0.00 0.00 37.66 4.94
2751 7858 2.514803 GGGCAGTACATTGGACAAACT 58.485 47.619 1.02 0.00 0.00 2.66
2757 7864 3.537580 GATAAACGGGCAGTACATTGGA 58.462 45.455 0.00 0.00 0.00 3.53
2779 7886 9.237846 GCCTCATGCTTATTTTATTCAAGTAAC 57.762 33.333 0.00 0.00 36.87 2.50
2781 7888 8.518430 TGCCTCATGCTTATTTTATTCAAGTA 57.482 30.769 0.00 0.00 42.00 2.24
2808 7915 9.787532 CAACTTACATAATCGGTTTCATGAAAT 57.212 29.630 23.05 9.97 32.36 2.17
2811 7918 6.597672 AGCAACTTACATAATCGGTTTCATGA 59.402 34.615 0.00 0.00 0.00 3.07
2816 7923 8.101654 TGTAAAGCAACTTACATAATCGGTTT 57.898 30.769 0.00 0.00 36.97 3.27
2817 7924 7.675962 TGTAAAGCAACTTACATAATCGGTT 57.324 32.000 2.87 0.00 36.97 4.44
2845 7953 7.362056 CCCAGACAAAATCGACTTACAATGAAT 60.362 37.037 0.00 0.00 0.00 2.57
2886 8001 3.956199 ACCGGGACATAATCGACTTAGAA 59.044 43.478 6.32 0.00 0.00 2.10
2929 8632 0.594110 GACCGGGATTGTTCGCAAAA 59.406 50.000 6.32 0.00 40.90 2.44
2933 8636 0.098728 CAATGACCGGGATTGTTCGC 59.901 55.000 16.59 0.00 0.00 4.70
2934 8637 0.732571 CCAATGACCGGGATTGTTCG 59.267 55.000 20.88 7.78 0.00 3.95
2935 8638 2.122783 TCCAATGACCGGGATTGTTC 57.877 50.000 20.88 4.45 0.00 3.18
2940 8643 3.380471 TTTCAATCCAATGACCGGGAT 57.620 42.857 6.32 0.00 45.71 3.85
2995 9959 3.574396 GGAGGAAGAAAAAGAAGGGGTTG 59.426 47.826 0.00 0.00 0.00 3.77
3011 9975 2.547640 GATGCAGCCTGCTGGAGGAA 62.548 60.000 20.32 1.10 46.93 3.36
3049 10013 1.117150 GCAAGGGACTACCATCGGTA 58.883 55.000 0.00 0.00 43.89 4.02
3072 10036 1.327303 CTAGCTGCGAGGGAGAGATT 58.673 55.000 0.00 0.00 0.00 2.40
3123 10087 5.298777 GGCTACGAGTCTTCCAATCTTAGTA 59.701 44.000 0.00 0.00 0.00 1.82
3128 10092 2.457598 TGGCTACGAGTCTTCCAATCT 58.542 47.619 0.00 0.00 0.00 2.40
3129 10093 2.961526 TGGCTACGAGTCTTCCAATC 57.038 50.000 0.00 0.00 0.00 2.67
3169 10133 1.883732 CTCCTCGGTCGTGACATGT 59.116 57.895 0.00 0.00 0.00 3.21
3171 10135 1.251527 AAGCTCCTCGGTCGTGACAT 61.252 55.000 2.00 0.00 0.00 3.06
3192 10172 1.078708 CCCCGCCACGTACTGAAAT 60.079 57.895 0.00 0.00 0.00 2.17
3201 10181 0.676782 AAGAAATCTTCCCCGCCACG 60.677 55.000 0.00 0.00 0.00 4.94
3217 10197 6.342819 TGAAACTAGAGGAGATAGGGAAGA 57.657 41.667 0.00 0.00 0.00 2.87
3220 10200 5.103043 ACCATGAAACTAGAGGAGATAGGGA 60.103 44.000 0.00 0.00 0.00 4.20
3226 10206 2.166459 CGCACCATGAAACTAGAGGAGA 59.834 50.000 0.00 0.00 0.00 3.71
3280 10272 5.044179 TCCTCAATCCATCATTGTAACCCTT 60.044 40.000 0.00 0.00 42.47 3.95
3328 10320 0.871057 GCAAAGCACTGACTGACCTC 59.129 55.000 0.00 0.00 0.00 3.85
3334 10326 1.153168 ACACCGCAAAGCACTGACT 60.153 52.632 0.00 0.00 0.00 3.41
3362 10354 0.553819 ACCTTTGCCCTACCACAACA 59.446 50.000 0.00 0.00 0.00 3.33
3369 10361 1.975660 TTGTGACACCTTTGCCCTAC 58.024 50.000 2.45 0.00 0.00 3.18
3402 10394 5.511234 TCTCTACCAAAGCGATAGTTACC 57.489 43.478 0.00 0.00 39.35 2.85
3420 10412 2.608261 CGAGTCGTCAAAGCCTTTCTCT 60.608 50.000 3.82 0.00 0.00 3.10
3428 10420 2.327081 TGTAGTCGAGTCGTCAAAGC 57.673 50.000 13.12 0.55 0.00 3.51
3436 10428 5.220381 TGATCACTTGTTTGTAGTCGAGTC 58.780 41.667 0.00 0.00 0.00 3.36
3449 10441 7.564793 TGCTAAGGTACAATATGATCACTTGT 58.435 34.615 22.24 22.24 37.00 3.16
3450 10442 8.437360 TTGCTAAGGTACAATATGATCACTTG 57.563 34.615 15.07 15.07 0.00 3.16
3451 10443 9.277783 GATTGCTAAGGTACAATATGATCACTT 57.722 33.333 0.00 0.00 36.65 3.16
3464 10456 7.553044 AGATTGGTTTAGTGATTGCTAAGGTAC 59.447 37.037 0.00 0.00 33.16 3.34
3471 10463 4.946157 CAGGAGATTGGTTTAGTGATTGCT 59.054 41.667 0.00 0.00 0.00 3.91
3478 10470 3.532102 ACCTCCAGGAGATTGGTTTAGT 58.468 45.455 19.21 0.50 39.35 2.24
3494 10486 4.460948 TTTGGTATCGTCAGTAACCTCC 57.539 45.455 0.00 0.00 32.99 4.30
3513 10505 2.025037 TGGTAGGGCTGATCATGCTTTT 60.025 45.455 14.20 5.85 0.00 2.27
3514 10506 1.565759 TGGTAGGGCTGATCATGCTTT 59.434 47.619 14.20 7.63 0.00 3.51
3536 10528 4.459337 GGTTGCTTGCAGTAATAGACCTTT 59.541 41.667 0.00 0.00 0.00 3.11
3539 10531 2.351726 CGGTTGCTTGCAGTAATAGACC 59.648 50.000 0.00 0.00 0.00 3.85
3547 10539 0.663153 GTTCTTCGGTTGCTTGCAGT 59.337 50.000 0.00 0.00 0.00 4.40
3618 10610 2.427095 GGAACCCCACTTGCATCAATAC 59.573 50.000 0.00 0.00 0.00 1.89
3626 10618 2.928801 ATTTTTGGAACCCCACTTGC 57.071 45.000 0.00 0.00 43.41 4.01
3627 10619 4.832823 AGACTATTTTTGGAACCCCACTTG 59.167 41.667 0.00 0.00 43.41 3.16
3672 10664 4.318546 CCACTGTAACTTTGTGTACTTCGC 60.319 45.833 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.