Multiple sequence alignment - TraesCS6A01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G180200 chr6A 100.000 2704 0 0 1 2704 203599672 203602375 0.000000e+00 4994.0
1 TraesCS6A01G180200 chr6A 84.711 242 34 2 2170 2409 512816519 512816279 3.480000e-59 239.0
2 TraesCS6A01G180200 chr6A 82.412 199 29 5 2433 2629 183267381 183267575 4.630000e-38 169.0
3 TraesCS6A01G180200 chr6A 93.151 73 4 1 2629 2701 188420020 188420091 3.680000e-19 106.0
4 TraesCS6A01G180200 chr6A 92.105 76 5 1 2629 2704 578543006 578542932 3.680000e-19 106.0
5 TraesCS6A01G180200 chr1A 96.195 2339 75 9 295 2629 295023882 295026210 0.000000e+00 3814.0
6 TraesCS6A01G180200 chr1A 96.939 294 9 0 1 294 295023267 295023560 6.730000e-136 494.0
7 TraesCS6A01G180200 chr3B 92.047 1949 83 23 711 2629 691288769 691286863 0.000000e+00 2675.0
8 TraesCS6A01G180200 chr3B 89.509 1487 106 19 663 2109 462046220 462047696 0.000000e+00 1836.0
9 TraesCS6A01G180200 chr3B 87.344 482 36 5 2174 2630 462048112 462048593 1.840000e-146 529.0
10 TraesCS6A01G180200 chr3B 86.645 307 18 6 311 617 462045934 462046217 4.340000e-83 318.0
11 TraesCS6A01G180200 chr3B 93.659 205 10 2 106 310 462045691 462045892 1.220000e-78 303.0
12 TraesCS6A01G180200 chr3B 88.816 152 13 2 564 715 691321847 691321700 1.650000e-42 183.0
13 TraesCS6A01G180200 chr5D 88.099 1941 144 37 610 2506 116618658 116620555 0.000000e+00 2224.0
14 TraesCS6A01G180200 chr5D 85.342 307 27 8 315 617 116618213 116618505 4.380000e-78 302.0
15 TraesCS6A01G180200 chr5D 92.195 205 13 3 70 273 116618013 116618215 1.230000e-73 287.0
16 TraesCS6A01G180200 chr5D 85.306 245 33 2 2169 2411 523669754 523669997 1.610000e-62 250.0
17 TraesCS6A01G180200 chr5D 93.506 77 3 2 1 76 116615987 116616062 2.200000e-21 113.0
18 TraesCS6A01G180200 chr5D 92.500 80 3 3 2622 2701 528741194 528741270 7.910000e-21 111.0
19 TraesCS6A01G180200 chr5D 93.878 49 1 2 263 310 135719495 135719448 3.730000e-09 73.1
20 TraesCS6A01G180200 chr6B 90.378 1507 92 28 1043 2506 431791896 431790400 0.000000e+00 1930.0
21 TraesCS6A01G180200 chr6B 90.459 283 17 6 1 273 431792429 431792147 5.500000e-97 364.0
22 TraesCS6A01G180200 chr6B 86.486 259 21 5 315 572 431792149 431791904 3.430000e-69 272.0
23 TraesCS6A01G180200 chr6B 82.915 199 28 5 2433 2629 662143953 662144147 9.950000e-40 174.0
24 TraesCS6A01G180200 chr6B 90.909 55 4 1 263 316 49553394 49553340 3.730000e-09 73.1
25 TraesCS6A01G180200 chr6B 91.837 49 3 1 263 310 48874030 48874078 1.740000e-07 67.6
26 TraesCS6A01G180200 chr4A 80.452 619 75 26 1212 1792 404201701 404202311 5.350000e-117 431.0
27 TraesCS6A01G180200 chr4A 76.435 331 46 18 1248 1547 40539698 40539369 1.680000e-32 150.0
28 TraesCS6A01G180200 chr3A 84.711 242 34 2 2170 2409 483242413 483242653 3.480000e-59 239.0
29 TraesCS6A01G180200 chr3A 95.890 73 2 1 2629 2701 170736070 170735999 1.700000e-22 117.0
30 TraesCS6A01G180200 chr3A 90.000 50 5 0 261 310 427762644 427762693 6.250000e-07 65.8
31 TraesCS6A01G180200 chr2B 84.082 245 36 2 2169 2411 779967005 779966762 1.620000e-57 233.0
32 TraesCS6A01G180200 chr4D 84.091 220 30 5 2412 2629 195014868 195015084 9.810000e-50 207.0
33 TraesCS6A01G180200 chr4D 82.474 194 25 7 2440 2630 264500850 264501037 7.750000e-36 161.0
34 TraesCS6A01G180200 chr4D 93.151 73 4 1 2629 2701 487215265 487215336 3.680000e-19 106.0
35 TraesCS6A01G180200 chr4B 78.371 356 45 19 1248 1572 520213573 520213927 4.570000e-48 202.0
36 TraesCS6A01G180200 chr4B 81.696 224 29 8 2412 2629 437224530 437224313 2.770000e-40 176.0
37 TraesCS6A01G180200 chr7A 81.858 226 31 8 2412 2634 91935056 91935274 5.950000e-42 182.0
38 TraesCS6A01G180200 chr7A 82.412 199 29 5 2433 2629 603089254 603089448 4.630000e-38 169.0
39 TraesCS6A01G180200 chr7A 94.366 71 3 1 2631 2701 181784944 181785013 1.020000e-19 108.0
40 TraesCS6A01G180200 chr5A 95.890 73 2 1 2629 2701 456631485 456631556 1.700000e-22 117.0
41 TraesCS6A01G180200 chr5B 92.105 76 5 1 2629 2704 427963193 427963119 3.680000e-19 106.0
42 TraesCS6A01G180200 chr5B 87.719 57 6 1 2023 2079 586481645 586481590 6.250000e-07 65.8
43 TraesCS6A01G180200 chr2D 93.151 73 4 1 2629 2701 526372520 526372591 3.680000e-19 106.0
44 TraesCS6A01G180200 chr3D 97.872 47 0 1 271 317 417211738 417211783 2.230000e-11 80.5
45 TraesCS6A01G180200 chr1D 92.308 52 3 1 269 320 329729670 329729720 3.730000e-09 73.1
46 TraesCS6A01G180200 chr2A 83.824 68 7 3 250 316 212901042 212900978 8.080000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G180200 chr6A 203599672 203602375 2703 False 4994.000000 4994 100.000000 1 2704 1 chr6A.!!$F3 2703
1 TraesCS6A01G180200 chr1A 295023267 295026210 2943 False 2154.000000 3814 96.567000 1 2629 2 chr1A.!!$F1 2628
2 TraesCS6A01G180200 chr3B 691286863 691288769 1906 True 2675.000000 2675 92.047000 711 2629 1 chr3B.!!$R1 1918
3 TraesCS6A01G180200 chr3B 462045691 462048593 2902 False 746.500000 1836 89.289250 106 2630 4 chr3B.!!$F1 2524
4 TraesCS6A01G180200 chr5D 116615987 116620555 4568 False 731.500000 2224 89.785500 1 2506 4 chr5D.!!$F3 2505
5 TraesCS6A01G180200 chr6B 431790400 431792429 2029 True 855.333333 1930 89.107667 1 2506 3 chr6B.!!$R2 2505
6 TraesCS6A01G180200 chr4A 404201701 404202311 610 False 431.000000 431 80.452000 1212 1792 1 chr4A.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 2836 0.320374 CACTACAGCCAACGGGAAGA 59.68 55.0 0.0 0.0 35.59 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 5356 2.545113 CCATGTCCATTGCTTAGCATGC 60.545 50.0 10.51 10.51 38.76 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
483 2813 0.676782 CGTGTAAAAGGCAGAGGGGG 60.677 60.000 0.00 0.00 0.00 5.40
506 2836 0.320374 CACTACAGCCAACGGGAAGA 59.680 55.000 0.00 0.00 35.59 2.87
534 2864 0.405585 GGATGGTGTATGGATGGGGG 59.594 60.000 0.00 0.00 0.00 5.40
561 2891 4.586421 AGATGAGATCTCACGGCATTCTTA 59.414 41.667 27.37 0.25 43.11 2.10
573 2903 3.071023 CGGCATTCTTATACTTCCCTCCA 59.929 47.826 0.00 0.00 0.00 3.86
608 2938 6.479001 GCTGCCTTTACTTATCGTTTATCTCA 59.521 38.462 0.00 0.00 0.00 3.27
617 2947 8.887036 ACTTATCGTTTATCTCACATTGCATA 57.113 30.769 0.00 0.00 0.00 3.14
703 3193 1.595466 CAGCCGGACGACTAGATAGT 58.405 55.000 5.05 0.00 39.71 2.12
800 3290 2.751166 TCTGAAGTTGCTGAGTAGGC 57.249 50.000 0.00 0.00 0.00 3.93
827 3317 8.494433 AGTGGCATGATTAGAAATAGAAACCTA 58.506 33.333 0.00 0.00 0.00 3.08
893 3383 2.068915 TGGCTGATGTTCCAGAGCA 58.931 52.632 0.00 0.00 36.29 4.26
1073 3567 2.766229 GGGAGGCAGAGAGGGGAC 60.766 72.222 0.00 0.00 0.00 4.46
1145 3641 0.178068 AAGCGCGATGGTGAAGGTAT 59.822 50.000 12.10 0.00 0.00 2.73
1220 3717 8.034215 CCATTGAAATAAACCAGACATTGCTTA 58.966 33.333 0.00 0.00 0.00 3.09
1332 3829 7.264947 CCAAGGTTAGTCACAATTGTCTTTTT 58.735 34.615 8.48 0.00 0.00 1.94
1741 4287 4.151512 CGGGTTTATTTGAATGCCAAACAC 59.848 41.667 0.00 0.00 46.41 3.32
1860 4413 4.969395 GCAAAAACTTTTTAAGGTGCATGC 59.031 37.500 11.82 11.82 0.00 4.06
1954 4509 0.601046 CTTCGCACCAGTGAGCTTCA 60.601 55.000 0.99 0.00 35.36 3.02
2219 5125 6.387465 CACAAACTTGTATCTCGGAACTCTA 58.613 40.000 0.00 0.00 39.91 2.43
2279 5188 1.656818 ATTTCCATTGCCTCCACGCG 61.657 55.000 3.53 3.53 0.00 6.01
2316 5225 0.889994 TGCTTGGTGCTTATTGGCAG 59.110 50.000 0.00 0.00 43.25 4.85
2429 5356 8.110860 AGTTTGGTAGTTAATGATCTTTGGTG 57.889 34.615 4.17 0.00 0.00 4.17
2545 5479 7.502226 TGAGATTTCAGCTTTTCAAAAGGTAGA 59.498 33.333 14.13 11.10 0.00 2.59
2630 5564 2.281762 GCACGTGCATACTTACTAGTGC 59.718 50.000 34.52 1.23 45.03 4.40
2631 5565 3.507786 CACGTGCATACTTACTAGTGCA 58.492 45.455 0.82 2.13 35.78 4.57
2632 5566 4.112634 CACGTGCATACTTACTAGTGCAT 58.887 43.478 0.82 0.00 36.20 3.96
2633 5567 4.026558 CACGTGCATACTTACTAGTGCATG 60.027 45.833 17.00 17.00 42.04 4.06
2634 5568 4.112634 CGTGCATACTTACTAGTGCATGT 58.887 43.478 5.39 1.68 36.20 3.21
2635 5569 5.163591 ACGTGCATACTTACTAGTGCATGTA 60.164 40.000 20.80 11.96 44.85 2.29
2636 5570 5.746721 CGTGCATACTTACTAGTGCATGTAA 59.253 40.000 5.39 0.00 36.20 2.41
2637 5571 6.420903 CGTGCATACTTACTAGTGCATGTAAT 59.579 38.462 5.39 0.00 36.20 1.89
2638 5572 7.042725 CGTGCATACTTACTAGTGCATGTAATT 60.043 37.037 5.39 7.44 36.20 1.40
2639 5573 9.256477 GTGCATACTTACTAGTGCATGTAATTA 57.744 33.333 5.39 8.88 36.20 1.40
2640 5574 9.476202 TGCATACTTACTAGTGCATGTAATTAG 57.524 33.333 5.39 0.00 35.78 1.73
2641 5575 9.692749 GCATACTTACTAGTGCATGTAATTAGA 57.307 33.333 5.39 0.00 35.78 2.10
2645 5579 9.409918 ACTTACTAGTGCATGTAATTAGAGAGA 57.590 33.333 5.39 0.00 31.99 3.10
2648 5582 8.470657 ACTAGTGCATGTAATTAGAGAGATGA 57.529 34.615 0.00 0.00 0.00 2.92
2649 5583 8.575589 ACTAGTGCATGTAATTAGAGAGATGAG 58.424 37.037 0.00 0.00 0.00 2.90
2650 5584 7.358770 AGTGCATGTAATTAGAGAGATGAGT 57.641 36.000 0.00 0.00 0.00 3.41
2651 5585 7.208777 AGTGCATGTAATTAGAGAGATGAGTG 58.791 38.462 0.00 0.00 0.00 3.51
2652 5586 5.987953 TGCATGTAATTAGAGAGATGAGTGC 59.012 40.000 0.00 0.00 0.00 4.40
2653 5587 5.987953 GCATGTAATTAGAGAGATGAGTGCA 59.012 40.000 0.00 0.00 0.00 4.57
2654 5588 6.649973 GCATGTAATTAGAGAGATGAGTGCAT 59.350 38.462 0.00 0.00 37.47 3.96
2655 5589 7.360185 GCATGTAATTAGAGAGATGAGTGCATG 60.360 40.741 0.00 0.00 34.11 4.06
2656 5590 7.117285 TGTAATTAGAGAGATGAGTGCATGT 57.883 36.000 0.00 0.00 34.11 3.21
2657 5591 6.982724 TGTAATTAGAGAGATGAGTGCATGTG 59.017 38.462 0.00 0.00 34.11 3.21
2658 5592 5.866159 ATTAGAGAGATGAGTGCATGTGA 57.134 39.130 0.00 0.00 34.11 3.58
2659 5593 5.665916 TTAGAGAGATGAGTGCATGTGAA 57.334 39.130 0.00 0.00 34.11 3.18
2660 5594 4.548451 AGAGAGATGAGTGCATGTGAAA 57.452 40.909 0.00 0.00 34.11 2.69
2661 5595 4.505808 AGAGAGATGAGTGCATGTGAAAG 58.494 43.478 0.00 0.00 34.11 2.62
2662 5596 3.607741 AGAGATGAGTGCATGTGAAAGG 58.392 45.455 0.00 0.00 34.11 3.11
2663 5597 3.262660 AGAGATGAGTGCATGTGAAAGGA 59.737 43.478 0.00 0.00 34.11 3.36
2664 5598 4.005650 GAGATGAGTGCATGTGAAAGGAA 58.994 43.478 0.00 0.00 34.11 3.36
2665 5599 4.401022 AGATGAGTGCATGTGAAAGGAAA 58.599 39.130 0.00 0.00 34.11 3.13
2666 5600 4.828939 AGATGAGTGCATGTGAAAGGAAAA 59.171 37.500 0.00 0.00 34.11 2.29
2667 5601 4.998671 TGAGTGCATGTGAAAGGAAAAA 57.001 36.364 0.00 0.00 0.00 1.94
2668 5602 5.534207 TGAGTGCATGTGAAAGGAAAAAT 57.466 34.783 0.00 0.00 0.00 1.82
2669 5603 5.916318 TGAGTGCATGTGAAAGGAAAAATT 58.084 33.333 0.00 0.00 0.00 1.82
2670 5604 7.048629 TGAGTGCATGTGAAAGGAAAAATTA 57.951 32.000 0.00 0.00 0.00 1.40
2671 5605 7.147312 TGAGTGCATGTGAAAGGAAAAATTAG 58.853 34.615 0.00 0.00 0.00 1.73
2672 5606 7.054491 AGTGCATGTGAAAGGAAAAATTAGT 57.946 32.000 0.00 0.00 0.00 2.24
2673 5607 7.147976 AGTGCATGTGAAAGGAAAAATTAGTC 58.852 34.615 0.00 0.00 0.00 2.59
2674 5608 6.922957 GTGCATGTGAAAGGAAAAATTAGTCA 59.077 34.615 0.00 0.00 0.00 3.41
2675 5609 7.599998 GTGCATGTGAAAGGAAAAATTAGTCAT 59.400 33.333 0.00 0.00 0.00 3.06
2676 5610 8.149647 TGCATGTGAAAGGAAAAATTAGTCATT 58.850 29.630 0.00 0.00 0.00 2.57
2677 5611 8.650714 GCATGTGAAAGGAAAAATTAGTCATTC 58.349 33.333 0.00 0.00 0.00 2.67
2678 5612 9.918630 CATGTGAAAGGAAAAATTAGTCATTCT 57.081 29.630 0.00 0.00 0.00 2.40
2687 5621 8.758715 GGAAAAATTAGTCATTCTAATGCATGC 58.241 33.333 11.82 11.82 45.35 4.06
2688 5622 9.304731 GAAAAATTAGTCATTCTAATGCATGCA 57.695 29.630 25.04 25.04 45.35 3.96
2689 5623 9.826574 AAAAATTAGTCATTCTAATGCATGCAT 57.173 25.926 27.46 27.46 45.35 3.96
2690 5624 8.812147 AAATTAGTCATTCTAATGCATGCATG 57.188 30.769 32.79 22.70 45.35 4.06
2691 5625 6.947644 TTAGTCATTCTAATGCATGCATGT 57.052 33.333 32.79 23.06 36.68 3.21
2692 5626 8.625786 ATTAGTCATTCTAATGCATGCATGTA 57.374 30.769 32.79 23.60 44.67 2.29
2693 5627 8.625786 TTAGTCATTCTAATGCATGCATGTAT 57.374 30.769 32.79 24.78 36.68 2.29
2694 5628 9.723601 TTAGTCATTCTAATGCATGCATGTATA 57.276 29.630 32.79 20.09 36.68 1.47
2695 5629 8.803397 AGTCATTCTAATGCATGCATGTATAT 57.197 30.769 32.79 19.31 36.68 0.86
2696 5630 9.895138 AGTCATTCTAATGCATGCATGTATATA 57.105 29.630 32.79 19.39 36.68 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
421 2745 6.756542 CGAAATGAAAAATGGGACCCTAATTC 59.243 38.462 13.00 11.28 0.00 2.17
483 2813 2.380410 CCGTTGGCTGTAGTGACGC 61.380 63.158 0.00 0.00 32.78 5.19
506 2836 3.918270 TCCATACACCATCCATCATCCAT 59.082 43.478 0.00 0.00 0.00 3.41
561 2891 1.027815 AGGGGAGTGGAGGGAAGTAT 58.972 55.000 0.00 0.00 0.00 2.12
573 2903 1.133809 TAAAGGCAGCACAGGGGAGT 61.134 55.000 0.00 0.00 0.00 3.85
608 2938 4.077108 CCATGCTCCACTATATGCAATGT 58.923 43.478 0.00 0.00 38.96 2.71
617 2947 1.583556 TGGACACCATGCTCCACTAT 58.416 50.000 1.80 0.00 31.20 2.12
694 3184 6.154706 CCAGTAGTCCACCAAAACTATCTAGT 59.845 42.308 0.00 0.00 38.39 2.57
703 3193 0.250553 CCGCCAGTAGTCCACCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
800 3290 7.284034 AGGTTTCTATTTCTAATCATGCCACTG 59.716 37.037 0.00 0.00 0.00 3.66
893 3383 2.230508 CACATGCAGGTCAAGATGCTTT 59.769 45.455 0.00 0.00 42.98 3.51
973 3464 9.337396 CTTAGCACCATGGTTACAAAATATAGA 57.663 33.333 16.84 0.00 0.00 1.98
1073 3567 0.249398 CTCCCTTGTTACCCACTCCG 59.751 60.000 0.00 0.00 0.00 4.63
1332 3829 4.527509 TGCACACACCTTTTCTGAAAAA 57.472 36.364 15.67 1.88 33.42 1.94
1389 3890 9.302345 CGTTCTTACTGACTACAATACATTGAT 57.698 33.333 8.89 0.00 40.14 2.57
1414 3915 6.201044 CACCTGCTCATAAGTATAAAAGGACG 59.799 42.308 0.00 0.00 0.00 4.79
1553 4057 9.139174 CAATCAAGAAAATGTGTTATGGTTACC 57.861 33.333 0.00 0.00 0.00 2.85
1741 4287 7.984391 TGACATACAGTTGTAGCCATAAAATG 58.016 34.615 0.00 0.00 33.52 2.32
1860 4413 9.933723 AAATAAAGAAAATCCAGAAGTTGATGG 57.066 29.630 0.00 0.00 37.97 3.51
2027 4583 7.718314 CCTTTAAAGGTAGAACCACACTTACTT 59.282 37.037 23.89 0.00 41.95 2.24
2219 5125 7.325660 AGCTGATCAAATGACATAATTCGTT 57.674 32.000 0.00 0.00 0.00 3.85
2316 5225 2.801077 AGTACCTACAAATGGGCCAC 57.199 50.000 9.28 0.00 0.00 5.01
2429 5356 2.545113 CCATGTCCATTGCTTAGCATGC 60.545 50.000 10.51 10.51 38.76 4.06
2577 5511 9.961265 ACGTCTCGACTAAAATATATTGATCAA 57.039 29.630 11.26 11.26 0.00 2.57
2582 5516 7.389603 TGCACGTCTCGACTAAAATATATTG 57.610 36.000 0.00 0.00 0.00 1.90
2585 5519 6.074516 GCAATGCACGTCTCGACTAAAATATA 60.075 38.462 0.00 0.00 0.00 0.86
2630 5564 7.656542 ACATGCACTCATCTCTCTAATTACATG 59.343 37.037 0.00 0.00 35.85 3.21
2631 5565 7.656542 CACATGCACTCATCTCTCTAATTACAT 59.343 37.037 0.00 0.00 0.00 2.29
2632 5566 6.982724 CACATGCACTCATCTCTCTAATTACA 59.017 38.462 0.00 0.00 0.00 2.41
2633 5567 7.205992 TCACATGCACTCATCTCTCTAATTAC 58.794 38.462 0.00 0.00 0.00 1.89
2634 5568 7.352079 TCACATGCACTCATCTCTCTAATTA 57.648 36.000 0.00 0.00 0.00 1.40
2635 5569 6.231258 TCACATGCACTCATCTCTCTAATT 57.769 37.500 0.00 0.00 0.00 1.40
2636 5570 5.866159 TCACATGCACTCATCTCTCTAAT 57.134 39.130 0.00 0.00 0.00 1.73
2637 5571 5.665916 TTCACATGCACTCATCTCTCTAA 57.334 39.130 0.00 0.00 0.00 2.10
2638 5572 5.394993 CCTTTCACATGCACTCATCTCTCTA 60.395 44.000 0.00 0.00 0.00 2.43
2639 5573 4.505808 CTTTCACATGCACTCATCTCTCT 58.494 43.478 0.00 0.00 0.00 3.10
2640 5574 3.622163 CCTTTCACATGCACTCATCTCTC 59.378 47.826 0.00 0.00 0.00 3.20
2641 5575 3.262660 TCCTTTCACATGCACTCATCTCT 59.737 43.478 0.00 0.00 0.00 3.10
2642 5576 3.603532 TCCTTTCACATGCACTCATCTC 58.396 45.455 0.00 0.00 0.00 2.75
2643 5577 3.708403 TCCTTTCACATGCACTCATCT 57.292 42.857 0.00 0.00 0.00 2.90
2644 5578 4.771590 TTTCCTTTCACATGCACTCATC 57.228 40.909 0.00 0.00 0.00 2.92
2645 5579 5.534207 TTTTTCCTTTCACATGCACTCAT 57.466 34.783 0.00 0.00 0.00 2.90
2646 5580 4.998671 TTTTTCCTTTCACATGCACTCA 57.001 36.364 0.00 0.00 0.00 3.41
2647 5581 7.147976 ACTAATTTTTCCTTTCACATGCACTC 58.852 34.615 0.00 0.00 0.00 3.51
2648 5582 7.054491 ACTAATTTTTCCTTTCACATGCACT 57.946 32.000 0.00 0.00 0.00 4.40
2649 5583 6.922957 TGACTAATTTTTCCTTTCACATGCAC 59.077 34.615 0.00 0.00 0.00 4.57
2650 5584 7.048629 TGACTAATTTTTCCTTTCACATGCA 57.951 32.000 0.00 0.00 0.00 3.96
2651 5585 8.538409 AATGACTAATTTTTCCTTTCACATGC 57.462 30.769 0.00 0.00 0.00 4.06
2652 5586 9.918630 AGAATGACTAATTTTTCCTTTCACATG 57.081 29.630 0.00 0.00 0.00 3.21
2661 5595 8.758715 GCATGCATTAGAATGACTAATTTTTCC 58.241 33.333 14.21 0.00 45.99 3.13
2662 5596 9.304731 TGCATGCATTAGAATGACTAATTTTTC 57.695 29.630 18.46 0.00 45.99 2.29
2663 5597 9.826574 ATGCATGCATTAGAATGACTAATTTTT 57.173 25.926 27.46 0.00 45.99 1.94
2664 5598 9.256477 CATGCATGCATTAGAATGACTAATTTT 57.744 29.630 30.32 0.74 45.99 1.82
2665 5599 8.418662 ACATGCATGCATTAGAATGACTAATTT 58.581 29.630 30.32 1.13 45.99 1.82
2666 5600 7.948357 ACATGCATGCATTAGAATGACTAATT 58.052 30.769 30.32 1.56 45.99 1.40
2668 5602 6.947644 ACATGCATGCATTAGAATGACTAA 57.052 33.333 30.32 0.00 43.89 2.24
2669 5603 9.895138 ATATACATGCATGCATTAGAATGACTA 57.105 29.630 30.32 15.33 38.70 2.59
2670 5604 8.803397 ATATACATGCATGCATTAGAATGACT 57.197 30.769 30.32 13.85 38.70 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.