Multiple sequence alignment - TraesCS6A01G180000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G180000 chr6A 100.000 2549 0 0 1 2549 203521496 203518948 0.000000e+00 4708
1 TraesCS6A01G180000 chr6A 96.548 1970 63 2 581 2549 57901155 57903120 0.000000e+00 3256
2 TraesCS6A01G180000 chr6A 90.449 178 15 2 144 319 277941745 277941568 1.520000e-57 233
3 TraesCS6A01G180000 chr7A 96.620 1982 47 5 584 2549 689996370 689994393 0.000000e+00 3271
4 TraesCS6A01G180000 chr7A 96.265 1981 54 7 585 2549 150203038 150201062 0.000000e+00 3230
5 TraesCS6A01G180000 chr5A 96.321 1984 55 4 583 2549 14186783 14184801 0.000000e+00 3243
6 TraesCS6A01G180000 chr2A 96.492 1967 60 6 585 2549 233255261 233257220 0.000000e+00 3241
7 TraesCS6A01G180000 chr2A 96.300 1973 65 7 580 2549 611725142 611723175 0.000000e+00 3232
8 TraesCS6A01G180000 chr2A 94.323 1973 98 8 580 2548 674415067 674413105 0.000000e+00 3011
9 TraesCS6A01G180000 chr2A 93.548 1984 81 10 582 2549 659814579 659816531 0.000000e+00 2911
10 TraesCS6A01G180000 chr2D 94.972 1969 88 8 583 2549 498471646 498469687 0.000000e+00 3077
11 TraesCS6A01G180000 chr2D 93.804 1969 82 12 585 2549 547242743 547240811 0.000000e+00 2924
12 TraesCS6A01G180000 chr2D 93.733 367 18 2 577 943 16065478 16065839 1.720000e-151 545
13 TraesCS6A01G180000 chr1B 93.036 359 21 1 585 943 645321437 645321791 2.910000e-144 521
14 TraesCS6A01G180000 chr1B 94.350 177 3 4 143 319 364289665 364289834 5.410000e-67 265
15 TraesCS6A01G180000 chr5D 91.599 369 22 5 583 943 357075970 357075603 3.790000e-138 501
16 TraesCS6A01G180000 chr6B 89.706 272 19 9 318 584 256447967 256448234 3.140000e-89 339
17 TraesCS6A01G180000 chr6B 95.105 143 7 0 1 143 256447834 256447976 2.550000e-55 226
18 TraesCS6A01G180000 chr2B 89.219 269 24 5 318 584 103960671 103960406 5.260000e-87 331
19 TraesCS6A01G180000 chr2B 88.848 269 25 5 318 584 103923347 103923082 2.450000e-85 326
20 TraesCS6A01G180000 chr2B 97.778 180 4 0 140 319 236849255 236849434 6.850000e-81 311
21 TraesCS6A01G180000 chr2B 93.007 143 10 0 1 143 103923480 103923338 2.570000e-50 209
22 TraesCS6A01G180000 chr2B 92.308 143 11 0 1 143 103960804 103960662 1.200000e-48 204
23 TraesCS6A01G180000 chr7B 100.000 176 0 0 144 319 750337447 750337622 2.450000e-85 326
24 TraesCS6A01G180000 chr1A 100.000 176 0 0 144 319 543641479 543641304 2.450000e-85 326
25 TraesCS6A01G180000 chr6D 88.806 268 21 5 318 584 144091143 144091402 1.140000e-83 320
26 TraesCS6A01G180000 chr6D 94.406 143 8 0 1 143 144091010 144091152 1.190000e-53 220
27 TraesCS6A01G180000 chr3B 95.531 179 5 2 143 319 120329817 120329640 1.490000e-72 283
28 TraesCS6A01G180000 chr3B 90.659 182 14 2 144 322 779533120 779532939 3.280000e-59 239
29 TraesCS6A01G180000 chr3A 92.090 177 13 1 144 319 703640022 703639846 5.450000e-62 248
30 TraesCS6A01G180000 chr3A 91.011 178 15 1 143 319 695402780 695402603 3.280000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G180000 chr6A 203518948 203521496 2548 True 4708 4708 100.000 1 2549 1 chr6A.!!$R1 2548
1 TraesCS6A01G180000 chr6A 57901155 57903120 1965 False 3256 3256 96.548 581 2549 1 chr6A.!!$F1 1968
2 TraesCS6A01G180000 chr7A 689994393 689996370 1977 True 3271 3271 96.620 584 2549 1 chr7A.!!$R2 1965
3 TraesCS6A01G180000 chr7A 150201062 150203038 1976 True 3230 3230 96.265 585 2549 1 chr7A.!!$R1 1964
4 TraesCS6A01G180000 chr5A 14184801 14186783 1982 True 3243 3243 96.321 583 2549 1 chr5A.!!$R1 1966
5 TraesCS6A01G180000 chr2A 233255261 233257220 1959 False 3241 3241 96.492 585 2549 1 chr2A.!!$F1 1964
6 TraesCS6A01G180000 chr2A 611723175 611725142 1967 True 3232 3232 96.300 580 2549 1 chr2A.!!$R1 1969
7 TraesCS6A01G180000 chr2A 674413105 674415067 1962 True 3011 3011 94.323 580 2548 1 chr2A.!!$R2 1968
8 TraesCS6A01G180000 chr2A 659814579 659816531 1952 False 2911 2911 93.548 582 2549 1 chr2A.!!$F2 1967
9 TraesCS6A01G180000 chr2D 498469687 498471646 1959 True 3077 3077 94.972 583 2549 1 chr2D.!!$R1 1966
10 TraesCS6A01G180000 chr2D 547240811 547242743 1932 True 2924 2924 93.804 585 2549 1 chr2D.!!$R2 1964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.031449 GACGATGCAGAGGAGGTAGC 59.969 60.0 0.0 0.0 0.0 3.58 F
283 284 0.033109 GTTTGCCCCTCCTAGCCAAT 60.033 55.0 0.0 0.0 0.0 3.16 F
284 285 0.033208 TTTGCCCCTCCTAGCCAATG 60.033 55.0 0.0 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1117 1138 0.806492 GGACGATTCTGGTTCCTCGC 60.806 60.000 0.0 0.0 34.60 5.03 R
1255 1276 0.960364 GCCAGAGCATCGACCCAAAA 60.960 55.000 0.0 0.0 42.67 2.44 R
2129 2158 1.215382 GTGCATTTTCCGCCCTTCC 59.785 57.895 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.096003 GGCGGCAGGTTGAGGCTA 62.096 66.667 3.07 0.00 0.00 3.93
33 34 2.190578 GCGGCAGGTTGAGGCTAT 59.809 61.111 0.00 0.00 0.00 2.97
34 35 1.452108 GCGGCAGGTTGAGGCTATT 60.452 57.895 0.00 0.00 0.00 1.73
35 36 1.718757 GCGGCAGGTTGAGGCTATTG 61.719 60.000 0.00 0.00 0.00 1.90
36 37 0.392998 CGGCAGGTTGAGGCTATTGT 60.393 55.000 0.00 0.00 0.00 2.71
37 38 1.839424 GGCAGGTTGAGGCTATTGTT 58.161 50.000 0.00 0.00 0.00 2.83
38 39 1.474077 GGCAGGTTGAGGCTATTGTTG 59.526 52.381 0.00 0.00 0.00 3.33
39 40 1.135286 GCAGGTTGAGGCTATTGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
45 46 2.489751 GGCTATTGTTGCCGCCAC 59.510 61.111 0.00 0.00 42.06 5.01
46 47 2.100216 GCTATTGTTGCCGCCACG 59.900 61.111 0.00 0.00 0.00 4.94
47 48 2.686816 GCTATTGTTGCCGCCACGT 61.687 57.895 0.00 0.00 0.00 4.49
48 49 1.873165 CTATTGTTGCCGCCACGTT 59.127 52.632 0.00 0.00 0.00 3.99
49 50 0.239879 CTATTGTTGCCGCCACGTTT 59.760 50.000 0.00 0.00 0.00 3.60
50 51 0.238817 TATTGTTGCCGCCACGTTTC 59.761 50.000 0.00 0.00 0.00 2.78
51 52 1.729470 ATTGTTGCCGCCACGTTTCA 61.729 50.000 0.00 0.00 0.00 2.69
52 53 2.353030 GTTGCCGCCACGTTTCAC 60.353 61.111 0.00 0.00 0.00 3.18
54 55 4.893601 TGCCGCCACGTTTCACGA 62.894 61.111 2.75 0.00 46.05 4.35
55 56 4.072088 GCCGCCACGTTTCACGAG 62.072 66.667 2.75 0.00 46.05 4.18
56 57 4.072088 CCGCCACGTTTCACGAGC 62.072 66.667 2.75 4.82 46.05 5.03
57 58 3.036084 CGCCACGTTTCACGAGCT 61.036 61.111 2.75 0.00 46.05 4.09
58 59 2.594962 CGCCACGTTTCACGAGCTT 61.595 57.895 2.75 0.00 46.05 3.74
59 60 1.082756 GCCACGTTTCACGAGCTTG 60.083 57.895 2.75 0.00 46.05 4.01
60 61 1.495584 GCCACGTTTCACGAGCTTGA 61.496 55.000 8.31 0.00 46.05 3.02
61 62 0.508641 CCACGTTTCACGAGCTTGAG 59.491 55.000 8.31 0.00 46.05 3.02
62 63 0.508641 CACGTTTCACGAGCTTGAGG 59.491 55.000 8.31 0.00 46.05 3.86
63 64 0.387929 ACGTTTCACGAGCTTGAGGA 59.612 50.000 8.31 1.78 46.05 3.71
64 65 1.063806 CGTTTCACGAGCTTGAGGAG 58.936 55.000 8.31 0.00 46.05 3.69
65 66 2.843093 CGTTTCACGAGCTTGAGGAGC 61.843 57.143 8.31 0.00 46.05 4.70
73 74 2.186384 CTTGAGGAGCAGCGGAGG 59.814 66.667 0.00 0.00 0.00 4.30
74 75 3.382803 CTTGAGGAGCAGCGGAGGG 62.383 68.421 0.00 0.00 0.00 4.30
75 76 3.905153 TTGAGGAGCAGCGGAGGGA 62.905 63.158 0.00 0.00 0.00 4.20
76 77 3.535962 GAGGAGCAGCGGAGGGAG 61.536 72.222 0.00 0.00 0.00 4.30
77 78 4.067512 AGGAGCAGCGGAGGGAGA 62.068 66.667 0.00 0.00 0.00 3.71
78 79 3.077556 GGAGCAGCGGAGGGAGAA 61.078 66.667 0.00 0.00 0.00 2.87
79 80 2.498726 GAGCAGCGGAGGGAGAAG 59.501 66.667 0.00 0.00 0.00 2.85
80 81 3.731653 GAGCAGCGGAGGGAGAAGC 62.732 68.421 0.00 0.00 0.00 3.86
81 82 4.087892 GCAGCGGAGGGAGAAGCA 62.088 66.667 0.00 0.00 0.00 3.91
82 83 2.186384 CAGCGGAGGGAGAAGCAG 59.814 66.667 0.00 0.00 0.00 4.24
83 84 2.038007 AGCGGAGGGAGAAGCAGA 59.962 61.111 0.00 0.00 0.00 4.26
84 85 2.057408 AGCGGAGGGAGAAGCAGAG 61.057 63.158 0.00 0.00 0.00 3.35
85 86 2.355193 GCGGAGGGAGAAGCAGAGT 61.355 63.158 0.00 0.00 0.00 3.24
86 87 1.813192 CGGAGGGAGAAGCAGAGTC 59.187 63.158 0.00 0.00 0.00 3.36
87 88 0.967887 CGGAGGGAGAAGCAGAGTCA 60.968 60.000 0.00 0.00 0.00 3.41
88 89 0.823460 GGAGGGAGAAGCAGAGTCAG 59.177 60.000 0.00 0.00 0.00 3.51
89 90 0.823460 GAGGGAGAAGCAGAGTCAGG 59.177 60.000 0.00 0.00 0.00 3.86
90 91 0.411452 AGGGAGAAGCAGAGTCAGGA 59.589 55.000 0.00 0.00 0.00 3.86
91 92 0.534873 GGGAGAAGCAGAGTCAGGAC 59.465 60.000 0.00 0.00 0.00 3.85
92 93 0.172352 GGAGAAGCAGAGTCAGGACG 59.828 60.000 0.00 0.00 36.20 4.79
93 94 1.169577 GAGAAGCAGAGTCAGGACGA 58.830 55.000 0.00 0.00 36.20 4.20
94 95 1.748493 GAGAAGCAGAGTCAGGACGAT 59.252 52.381 0.00 0.00 36.20 3.73
95 96 1.476085 AGAAGCAGAGTCAGGACGATG 59.524 52.381 0.00 0.00 36.20 3.84
96 97 0.108424 AAGCAGAGTCAGGACGATGC 60.108 55.000 18.22 18.22 43.32 3.91
97 98 1.216444 GCAGAGTCAGGACGATGCA 59.784 57.895 19.91 0.00 42.87 3.96
98 99 0.805322 GCAGAGTCAGGACGATGCAG 60.805 60.000 19.91 0.00 42.87 4.41
99 100 0.813821 CAGAGTCAGGACGATGCAGA 59.186 55.000 0.00 0.00 36.20 4.26
100 101 1.102154 AGAGTCAGGACGATGCAGAG 58.898 55.000 0.00 0.00 36.20 3.35
101 102 0.102120 GAGTCAGGACGATGCAGAGG 59.898 60.000 0.00 0.00 36.20 3.69
102 103 0.323816 AGTCAGGACGATGCAGAGGA 60.324 55.000 0.00 0.00 36.20 3.71
103 104 0.102120 GTCAGGACGATGCAGAGGAG 59.898 60.000 0.00 0.00 0.00 3.69
104 105 1.039785 TCAGGACGATGCAGAGGAGG 61.040 60.000 0.00 0.00 0.00 4.30
105 106 1.000993 AGGACGATGCAGAGGAGGT 59.999 57.895 0.00 0.00 0.00 3.85
106 107 0.259065 AGGACGATGCAGAGGAGGTA 59.741 55.000 0.00 0.00 0.00 3.08
107 108 0.671251 GGACGATGCAGAGGAGGTAG 59.329 60.000 0.00 0.00 0.00 3.18
108 109 0.031449 GACGATGCAGAGGAGGTAGC 59.969 60.000 0.00 0.00 0.00 3.58
109 110 0.684479 ACGATGCAGAGGAGGTAGCA 60.684 55.000 0.00 0.00 41.73 3.49
111 112 1.604947 CGATGCAGAGGAGGTAGCATG 60.605 57.143 3.23 0.00 46.71 4.06
112 113 0.108207 ATGCAGAGGAGGTAGCATGC 59.892 55.000 10.51 10.51 45.19 4.06
113 114 1.593750 GCAGAGGAGGTAGCATGCG 60.594 63.158 13.01 0.00 0.00 4.73
114 115 2.021068 GCAGAGGAGGTAGCATGCGA 62.021 60.000 13.01 3.59 0.00 5.10
115 116 0.249238 CAGAGGAGGTAGCATGCGAC 60.249 60.000 21.28 21.28 0.00 5.19
116 117 0.396417 AGAGGAGGTAGCATGCGACT 60.396 55.000 26.79 18.94 0.00 4.18
117 118 0.461961 GAGGAGGTAGCATGCGACTT 59.538 55.000 26.79 21.53 0.00 3.01
118 119 0.176680 AGGAGGTAGCATGCGACTTG 59.823 55.000 26.79 0.00 0.00 3.16
119 120 1.432270 GGAGGTAGCATGCGACTTGC 61.432 60.000 26.79 22.06 46.70 4.01
124 125 2.503375 GCATGCGACTTGCTGCAC 60.503 61.111 0.00 0.00 45.07 4.57
125 126 2.202260 CATGCGACTTGCTGCACG 60.202 61.111 0.00 2.38 45.07 5.34
126 127 3.425713 ATGCGACTTGCTGCACGG 61.426 61.111 11.00 5.74 45.07 4.94
130 131 3.058160 GACTTGCTGCACGGCCAT 61.058 61.111 11.00 0.00 0.00 4.40
131 132 3.332493 GACTTGCTGCACGGCCATG 62.332 63.158 11.00 0.00 0.00 3.66
132 133 4.124351 CTTGCTGCACGGCCATGG 62.124 66.667 7.63 7.63 0.00 3.66
133 134 4.972733 TTGCTGCACGGCCATGGT 62.973 61.111 14.67 0.00 0.00 3.55
136 137 2.985282 CTGCACGGCCATGGTGTT 60.985 61.111 14.67 0.00 37.70 3.32
137 138 2.981560 CTGCACGGCCATGGTGTTC 61.982 63.158 14.67 7.73 37.70 3.18
138 139 2.983030 GCACGGCCATGGTGTTCA 60.983 61.111 14.67 0.00 37.70 3.18
139 140 2.342650 GCACGGCCATGGTGTTCAT 61.343 57.895 14.67 0.00 37.70 2.57
148 149 1.830279 ATGGTGTTCATGAGCAGTGG 58.170 50.000 13.02 0.00 34.22 4.00
149 150 0.890542 TGGTGTTCATGAGCAGTGGC 60.891 55.000 13.02 0.93 41.61 5.01
166 167 4.883354 CGGAGCTTCATGGGGGCC 62.883 72.222 0.00 0.00 0.00 5.80
167 168 3.743017 GGAGCTTCATGGGGGCCA 61.743 66.667 4.39 0.00 38.19 5.36
168 169 2.360191 GAGCTTCATGGGGGCCAA 59.640 61.111 4.39 0.00 36.95 4.52
169 170 2.037847 AGCTTCATGGGGGCCAAC 59.962 61.111 4.39 0.00 36.95 3.77
170 171 3.076916 GCTTCATGGGGGCCAACC 61.077 66.667 4.39 6.97 36.95 3.77
171 172 2.772924 CTTCATGGGGGCCAACCT 59.227 61.111 15.84 0.48 36.95 3.50
172 173 1.079073 CTTCATGGGGGCCAACCTT 59.921 57.895 15.84 7.65 36.95 3.50
173 174 1.229145 TTCATGGGGGCCAACCTTG 60.229 57.895 19.63 19.63 36.95 3.61
228 229 8.615878 TTGCATATATACCTGTGTATTTGACC 57.384 34.615 8.08 0.00 38.60 4.02
229 230 7.165485 TGCATATATACCTGTGTATTTGACCC 58.835 38.462 8.08 0.00 38.60 4.46
230 231 7.165485 GCATATATACCTGTGTATTTGACCCA 58.835 38.462 8.08 0.00 38.60 4.51
231 232 7.829211 GCATATATACCTGTGTATTTGACCCAT 59.171 37.037 8.08 0.00 38.60 4.00
232 233 9.383519 CATATATACCTGTGTATTTGACCCATC 57.616 37.037 0.00 0.00 38.60 3.51
233 234 5.975988 ATACCTGTGTATTTGACCCATCT 57.024 39.130 0.00 0.00 33.86 2.90
234 235 4.657814 ACCTGTGTATTTGACCCATCTT 57.342 40.909 0.00 0.00 0.00 2.40
235 236 4.998051 ACCTGTGTATTTGACCCATCTTT 58.002 39.130 0.00 0.00 0.00 2.52
236 237 5.393866 ACCTGTGTATTTGACCCATCTTTT 58.606 37.500 0.00 0.00 0.00 2.27
237 238 5.476945 ACCTGTGTATTTGACCCATCTTTTC 59.523 40.000 0.00 0.00 0.00 2.29
238 239 5.476599 CCTGTGTATTTGACCCATCTTTTCA 59.523 40.000 0.00 0.00 0.00 2.69
239 240 6.325919 TGTGTATTTGACCCATCTTTTCAC 57.674 37.500 0.00 0.00 0.00 3.18
240 241 6.068010 TGTGTATTTGACCCATCTTTTCACT 58.932 36.000 0.00 0.00 0.00 3.41
241 242 7.227873 TGTGTATTTGACCCATCTTTTCACTA 58.772 34.615 0.00 0.00 0.00 2.74
242 243 7.721842 TGTGTATTTGACCCATCTTTTCACTAA 59.278 33.333 0.00 0.00 0.00 2.24
243 244 8.573035 GTGTATTTGACCCATCTTTTCACTAAA 58.427 33.333 0.00 0.00 0.00 1.85
244 245 9.137459 TGTATTTGACCCATCTTTTCACTAAAA 57.863 29.630 0.00 0.00 33.58 1.52
245 246 9.974980 GTATTTGACCCATCTTTTCACTAAAAA 57.025 29.630 0.00 0.00 34.26 1.94
247 248 9.710900 ATTTGACCCATCTTTTCACTAAAAATC 57.289 29.630 0.00 0.00 36.30 2.17
248 249 7.831691 TGACCCATCTTTTCACTAAAAATCA 57.168 32.000 0.00 0.00 36.30 2.57
249 250 7.885297 TGACCCATCTTTTCACTAAAAATCAG 58.115 34.615 0.00 0.00 36.30 2.90
250 251 6.691508 ACCCATCTTTTCACTAAAAATCAGC 58.308 36.000 0.00 0.00 36.30 4.26
251 252 6.267471 ACCCATCTTTTCACTAAAAATCAGCA 59.733 34.615 0.00 0.00 36.30 4.41
252 253 7.038799 ACCCATCTTTTCACTAAAAATCAGCAT 60.039 33.333 0.00 0.00 36.30 3.79
253 254 8.469200 CCCATCTTTTCACTAAAAATCAGCATA 58.531 33.333 0.00 0.00 36.30 3.14
269 270 6.709145 TCAGCATATTGTGATTTTGTTTGC 57.291 33.333 0.00 0.00 0.00 3.68
270 271 5.638657 TCAGCATATTGTGATTTTGTTTGCC 59.361 36.000 0.00 0.00 0.00 4.52
271 272 4.937015 AGCATATTGTGATTTTGTTTGCCC 59.063 37.500 0.00 0.00 0.00 5.36
272 273 4.094739 GCATATTGTGATTTTGTTTGCCCC 59.905 41.667 0.00 0.00 0.00 5.80
273 274 5.490159 CATATTGTGATTTTGTTTGCCCCT 58.510 37.500 0.00 0.00 0.00 4.79
274 275 3.467374 TTGTGATTTTGTTTGCCCCTC 57.533 42.857 0.00 0.00 0.00 4.30
275 276 1.691434 TGTGATTTTGTTTGCCCCTCC 59.309 47.619 0.00 0.00 0.00 4.30
276 277 1.970640 GTGATTTTGTTTGCCCCTCCT 59.029 47.619 0.00 0.00 0.00 3.69
277 278 3.161866 GTGATTTTGTTTGCCCCTCCTA 58.838 45.455 0.00 0.00 0.00 2.94
278 279 3.193479 GTGATTTTGTTTGCCCCTCCTAG 59.807 47.826 0.00 0.00 0.00 3.02
279 280 1.627864 TTTTGTTTGCCCCTCCTAGC 58.372 50.000 0.00 0.00 0.00 3.42
280 281 0.251608 TTTGTTTGCCCCTCCTAGCC 60.252 55.000 0.00 0.00 0.00 3.93
281 282 1.431195 TTGTTTGCCCCTCCTAGCCA 61.431 55.000 0.00 0.00 0.00 4.75
282 283 1.382629 GTTTGCCCCTCCTAGCCAA 59.617 57.895 0.00 0.00 0.00 4.52
283 284 0.033109 GTTTGCCCCTCCTAGCCAAT 60.033 55.000 0.00 0.00 0.00 3.16
284 285 0.033208 TTTGCCCCTCCTAGCCAATG 60.033 55.000 0.00 0.00 0.00 2.82
285 286 2.203408 GCCCCTCCTAGCCAATGC 60.203 66.667 0.00 0.00 37.95 3.56
286 287 2.517919 CCCCTCCTAGCCAATGCC 59.482 66.667 0.00 0.00 38.69 4.40
287 288 2.517919 CCCTCCTAGCCAATGCCC 59.482 66.667 0.00 0.00 38.69 5.36
288 289 2.517919 CCTCCTAGCCAATGCCCC 59.482 66.667 0.00 0.00 38.69 5.80
289 290 2.517919 CTCCTAGCCAATGCCCCC 59.482 66.667 0.00 0.00 38.69 5.40
305 306 3.944061 CCCCCATGATTTTAGCCCA 57.056 52.632 0.00 0.00 0.00 5.36
306 307 2.173126 CCCCCATGATTTTAGCCCAA 57.827 50.000 0.00 0.00 0.00 4.12
307 308 2.041701 CCCCCATGATTTTAGCCCAAG 58.958 52.381 0.00 0.00 0.00 3.61
308 309 1.413812 CCCCATGATTTTAGCCCAAGC 59.586 52.381 0.00 0.00 40.32 4.01
319 320 4.335647 CCCAAGCTCCGCCACTGT 62.336 66.667 0.00 0.00 0.00 3.55
320 321 2.281761 CCAAGCTCCGCCACTGTT 60.282 61.111 0.00 0.00 0.00 3.16
321 322 2.328099 CCAAGCTCCGCCACTGTTC 61.328 63.158 0.00 0.00 0.00 3.18
322 323 1.597854 CAAGCTCCGCCACTGTTCA 60.598 57.895 0.00 0.00 0.00 3.18
323 324 0.957395 CAAGCTCCGCCACTGTTCAT 60.957 55.000 0.00 0.00 0.00 2.57
324 325 0.957395 AAGCTCCGCCACTGTTCATG 60.957 55.000 0.00 0.00 0.00 3.07
325 326 1.375908 GCTCCGCCACTGTTCATGA 60.376 57.895 0.00 0.00 0.00 3.07
326 327 1.364626 GCTCCGCCACTGTTCATGAG 61.365 60.000 0.00 0.00 0.00 2.90
327 328 0.742281 CTCCGCCACTGTTCATGAGG 60.742 60.000 0.00 0.00 0.00 3.86
328 329 1.746615 CCGCCACTGTTCATGAGGG 60.747 63.158 0.00 0.00 0.00 4.30
329 330 2.401766 CGCCACTGTTCATGAGGGC 61.402 63.158 11.92 11.92 38.04 5.19
330 331 2.401766 GCCACTGTTCATGAGGGCG 61.402 63.158 0.00 0.00 0.00 6.13
331 332 1.003355 CCACTGTTCATGAGGGCGT 60.003 57.895 0.00 0.00 0.00 5.68
332 333 0.249120 CCACTGTTCATGAGGGCGTA 59.751 55.000 0.00 0.00 0.00 4.42
333 334 1.645034 CACTGTTCATGAGGGCGTAG 58.355 55.000 0.00 0.00 0.00 3.51
334 335 1.204704 CACTGTTCATGAGGGCGTAGA 59.795 52.381 0.00 0.00 0.00 2.59
335 336 1.478510 ACTGTTCATGAGGGCGTAGAG 59.521 52.381 0.00 0.00 0.00 2.43
336 337 1.478510 CTGTTCATGAGGGCGTAGAGT 59.521 52.381 0.00 0.00 0.00 3.24
337 338 1.204704 TGTTCATGAGGGCGTAGAGTG 59.795 52.381 0.00 0.00 0.00 3.51
338 339 1.476891 GTTCATGAGGGCGTAGAGTGA 59.523 52.381 0.00 0.00 0.00 3.41
339 340 1.393603 TCATGAGGGCGTAGAGTGAG 58.606 55.000 0.00 0.00 0.00 3.51
340 341 0.249238 CATGAGGGCGTAGAGTGAGC 60.249 60.000 0.00 0.00 0.00 4.26
341 342 1.729470 ATGAGGGCGTAGAGTGAGCG 61.729 60.000 0.00 0.00 0.00 5.03
345 346 3.241059 GCGTAGAGTGAGCGCGTG 61.241 66.667 8.43 0.00 41.70 5.34
346 347 3.241059 CGTAGAGTGAGCGCGTGC 61.241 66.667 14.39 14.39 43.24 5.34
347 348 2.126463 GTAGAGTGAGCGCGTGCA 60.126 61.111 24.79 2.99 46.23 4.57
348 349 2.155194 GTAGAGTGAGCGCGTGCAG 61.155 63.158 24.79 0.00 46.23 4.41
349 350 2.626780 TAGAGTGAGCGCGTGCAGT 61.627 57.895 24.79 9.28 46.23 4.40
350 351 2.142357 TAGAGTGAGCGCGTGCAGTT 62.142 55.000 24.79 1.39 46.23 3.16
351 352 3.004734 GAGTGAGCGCGTGCAGTTC 62.005 63.158 24.79 12.73 46.23 3.01
352 353 3.337889 GTGAGCGCGTGCAGTTCA 61.338 61.111 24.79 15.40 46.23 3.18
353 354 2.357396 TGAGCGCGTGCAGTTCAT 60.357 55.556 24.79 0.00 46.23 2.57
354 355 2.097160 GAGCGCGTGCAGTTCATG 59.903 61.111 24.79 0.00 46.23 3.07
355 356 2.357396 AGCGCGTGCAGTTCATGA 60.357 55.556 24.79 0.00 46.23 3.07
356 357 2.097160 GCGCGTGCAGTTCATGAG 59.903 61.111 17.66 0.00 42.15 2.90
357 358 2.780643 CGCGTGCAGTTCATGAGG 59.219 61.111 0.00 0.00 33.49 3.86
358 359 2.743752 CGCGTGCAGTTCATGAGGG 61.744 63.158 0.00 0.00 33.49 4.30
359 360 3.044059 GCGTGCAGTTCATGAGGGC 62.044 63.158 0.00 1.90 33.49 5.19
360 361 2.743752 CGTGCAGTTCATGAGGGCG 61.744 63.158 0.00 0.00 33.49 6.13
361 362 1.672356 GTGCAGTTCATGAGGGCGT 60.672 57.895 0.00 0.00 0.00 5.68
362 363 0.391130 GTGCAGTTCATGAGGGCGTA 60.391 55.000 0.00 0.00 0.00 4.42
363 364 0.108186 TGCAGTTCATGAGGGCGTAG 60.108 55.000 0.00 0.00 0.00 3.51
364 365 0.175760 GCAGTTCATGAGGGCGTAGA 59.824 55.000 0.00 0.00 0.00 2.59
365 366 1.804372 GCAGTTCATGAGGGCGTAGAG 60.804 57.143 0.00 0.00 0.00 2.43
366 367 1.478510 CAGTTCATGAGGGCGTAGAGT 59.521 52.381 0.00 0.00 0.00 3.24
367 368 1.478510 AGTTCATGAGGGCGTAGAGTG 59.521 52.381 0.00 0.00 0.00 3.51
368 369 1.476891 GTTCATGAGGGCGTAGAGTGA 59.523 52.381 0.00 0.00 0.00 3.41
369 370 1.393603 TCATGAGGGCGTAGAGTGAG 58.606 55.000 0.00 0.00 0.00 3.51
370 371 0.249238 CATGAGGGCGTAGAGTGAGC 60.249 60.000 0.00 0.00 0.00 4.26
371 372 0.396417 ATGAGGGCGTAGAGTGAGCT 60.396 55.000 0.00 0.00 0.00 4.09
372 373 1.032657 TGAGGGCGTAGAGTGAGCTC 61.033 60.000 6.82 6.82 41.94 4.09
373 374 1.730451 GAGGGCGTAGAGTGAGCTCC 61.730 65.000 12.15 2.40 42.59 4.70
374 375 2.787567 GGGCGTAGAGTGAGCTCCC 61.788 68.421 12.15 0.00 42.59 4.30
375 376 2.052690 GGCGTAGAGTGAGCTCCCA 61.053 63.158 12.15 0.00 42.59 4.37
376 377 1.435515 GCGTAGAGTGAGCTCCCAG 59.564 63.158 12.15 0.00 42.59 4.45
377 378 1.032657 GCGTAGAGTGAGCTCCCAGA 61.033 60.000 12.15 0.00 42.59 3.86
378 379 1.686355 CGTAGAGTGAGCTCCCAGAT 58.314 55.000 12.15 0.00 42.59 2.90
379 380 1.336440 CGTAGAGTGAGCTCCCAGATG 59.664 57.143 12.15 0.00 42.59 2.90
380 381 1.686052 GTAGAGTGAGCTCCCAGATGG 59.314 57.143 12.15 0.00 42.59 3.51
381 382 0.042431 AGAGTGAGCTCCCAGATGGT 59.958 55.000 12.15 0.00 42.59 3.55
382 383 0.463620 GAGTGAGCTCCCAGATGGTC 59.536 60.000 12.15 0.00 35.76 4.02
383 384 0.252421 AGTGAGCTCCCAGATGGTCA 60.252 55.000 12.15 0.00 38.20 4.02
384 385 2.290847 TGAGCTCCCAGATGGTCAC 58.709 57.895 12.15 0.00 36.04 3.67
385 386 0.252421 TGAGCTCCCAGATGGTCACT 60.252 55.000 12.15 0.00 36.04 3.41
386 387 0.908198 GAGCTCCCAGATGGTCACTT 59.092 55.000 0.87 0.00 34.77 3.16
387 388 0.908198 AGCTCCCAGATGGTCACTTC 59.092 55.000 0.00 0.00 34.77 3.01
388 389 0.908198 GCTCCCAGATGGTCACTTCT 59.092 55.000 0.00 0.00 34.77 2.85
389 390 1.280421 GCTCCCAGATGGTCACTTCTT 59.720 52.381 0.00 0.00 34.77 2.52
390 391 2.938756 GCTCCCAGATGGTCACTTCTTG 60.939 54.545 0.00 0.00 34.77 3.02
391 392 2.304180 CTCCCAGATGGTCACTTCTTGT 59.696 50.000 0.00 0.00 34.77 3.16
405 406 2.845363 TCTTGTGAAGAGAGCATGCA 57.155 45.000 21.98 0.00 32.71 3.96
406 407 3.345508 TCTTGTGAAGAGAGCATGCAT 57.654 42.857 21.98 7.95 32.71 3.96
407 408 3.268330 TCTTGTGAAGAGAGCATGCATC 58.732 45.455 21.98 17.12 32.71 3.91
408 409 1.648504 TGTGAAGAGAGCATGCATCG 58.351 50.000 21.98 0.00 0.00 3.84
409 410 0.304098 GTGAAGAGAGCATGCATCGC 59.696 55.000 21.98 15.41 0.00 4.58
410 411 0.177373 TGAAGAGAGCATGCATCGCT 59.823 50.000 21.98 19.30 44.10 4.93
414 415 3.232462 GAGCATGCATCGCTCGAG 58.768 61.111 25.08 8.45 45.82 4.04
415 416 2.279985 AGCATGCATCGCTCGAGG 60.280 61.111 21.98 4.50 33.35 4.63
416 417 3.344215 GCATGCATCGCTCGAGGG 61.344 66.667 22.60 22.60 0.00 4.30
417 418 2.664185 CATGCATCGCTCGAGGGG 60.664 66.667 27.01 14.44 0.00 4.79
418 419 3.933722 ATGCATCGCTCGAGGGGG 61.934 66.667 27.01 20.23 0.00 5.40
420 421 3.224324 GCATCGCTCGAGGGGGTA 61.224 66.667 27.01 10.52 0.00 3.69
421 422 2.574955 GCATCGCTCGAGGGGGTAT 61.575 63.158 27.01 12.35 0.00 2.73
422 423 1.290324 CATCGCTCGAGGGGGTATG 59.710 63.158 27.01 19.39 0.00 2.39
423 424 1.908793 ATCGCTCGAGGGGGTATGG 60.909 63.158 27.01 0.00 0.00 2.74
424 425 3.616721 CGCTCGAGGGGGTATGGG 61.617 72.222 21.06 0.00 0.00 4.00
425 426 2.122989 GCTCGAGGGGGTATGGGA 60.123 66.667 15.58 0.00 0.00 4.37
426 427 2.508751 GCTCGAGGGGGTATGGGAC 61.509 68.421 15.58 0.00 0.00 4.46
439 440 2.080201 TGGGACAAATAAGCCGGGT 58.920 52.632 0.00 0.00 31.92 5.28
440 441 0.034863 TGGGACAAATAAGCCGGGTC 60.035 55.000 6.62 0.67 31.92 4.46
441 442 0.034863 GGGACAAATAAGCCGGGTCA 60.035 55.000 6.62 0.00 0.00 4.02
442 443 1.092348 GGACAAATAAGCCGGGTCAC 58.908 55.000 6.62 0.00 0.00 3.67
443 444 1.339727 GGACAAATAAGCCGGGTCACT 60.340 52.381 6.62 0.00 0.00 3.41
444 445 2.007608 GACAAATAAGCCGGGTCACTC 58.992 52.381 6.62 0.00 0.00 3.51
445 446 1.339727 ACAAATAAGCCGGGTCACTCC 60.340 52.381 6.62 0.00 0.00 3.85
446 447 0.988832 AAATAAGCCGGGTCACTCCA 59.011 50.000 6.62 0.00 38.11 3.86
447 448 1.213296 AATAAGCCGGGTCACTCCAT 58.787 50.000 6.62 0.00 38.11 3.41
448 449 0.759346 ATAAGCCGGGTCACTCCATC 59.241 55.000 6.62 0.00 38.11 3.51
449 450 1.335132 TAAGCCGGGTCACTCCATCC 61.335 60.000 6.62 0.00 38.11 3.51
450 451 3.399181 GCCGGGTCACTCCATCCA 61.399 66.667 2.18 0.00 38.11 3.41
451 452 2.966732 GCCGGGTCACTCCATCCAA 61.967 63.158 2.18 0.00 38.11 3.53
452 453 1.682849 CCGGGTCACTCCATCCAAA 59.317 57.895 0.00 0.00 38.11 3.28
453 454 0.255890 CCGGGTCACTCCATCCAAAT 59.744 55.000 0.00 0.00 38.11 2.32
454 455 1.488812 CCGGGTCACTCCATCCAAATA 59.511 52.381 0.00 0.00 38.11 1.40
455 456 2.106511 CCGGGTCACTCCATCCAAATAT 59.893 50.000 0.00 0.00 38.11 1.28
456 457 3.435026 CCGGGTCACTCCATCCAAATATT 60.435 47.826 0.00 0.00 38.11 1.28
457 458 3.565482 CGGGTCACTCCATCCAAATATTG 59.435 47.826 0.00 0.00 38.11 1.90
458 459 4.536765 GGGTCACTCCATCCAAATATTGT 58.463 43.478 0.00 0.00 38.11 2.71
459 460 4.956075 GGGTCACTCCATCCAAATATTGTT 59.044 41.667 0.00 0.00 38.11 2.83
460 461 5.163519 GGGTCACTCCATCCAAATATTGTTG 60.164 44.000 0.00 0.00 38.11 3.33
461 462 5.343249 GTCACTCCATCCAAATATTGTTGC 58.657 41.667 0.00 0.00 0.00 4.17
462 463 5.126061 GTCACTCCATCCAAATATTGTTGCT 59.874 40.000 0.00 0.00 0.00 3.91
463 464 5.125900 TCACTCCATCCAAATATTGTTGCTG 59.874 40.000 0.00 0.00 0.00 4.41
464 465 5.125900 CACTCCATCCAAATATTGTTGCTGA 59.874 40.000 0.00 0.00 0.00 4.26
465 466 5.359009 ACTCCATCCAAATATTGTTGCTGAG 59.641 40.000 0.00 0.00 0.00 3.35
466 467 5.263599 TCCATCCAAATATTGTTGCTGAGT 58.736 37.500 0.00 0.00 0.00 3.41
467 468 6.422333 TCCATCCAAATATTGTTGCTGAGTA 58.578 36.000 0.00 0.00 0.00 2.59
468 469 6.318648 TCCATCCAAATATTGTTGCTGAGTAC 59.681 38.462 0.00 0.00 0.00 2.73
469 470 6.095300 CCATCCAAATATTGTTGCTGAGTACA 59.905 38.462 0.00 0.00 0.00 2.90
470 471 6.741992 TCCAAATATTGTTGCTGAGTACAG 57.258 37.500 0.00 0.00 45.91 2.74
486 487 2.708386 ACAGCAGTACAAGAGTCGAC 57.292 50.000 7.70 7.70 0.00 4.20
487 488 2.231529 ACAGCAGTACAAGAGTCGACT 58.768 47.619 20.18 20.18 0.00 4.18
488 489 2.623889 ACAGCAGTACAAGAGTCGACTT 59.376 45.455 21.08 6.08 0.00 3.01
489 490 3.068307 ACAGCAGTACAAGAGTCGACTTT 59.932 43.478 21.08 11.82 0.00 2.66
490 491 4.277672 ACAGCAGTACAAGAGTCGACTTTA 59.722 41.667 21.08 6.31 0.00 1.85
491 492 4.854291 CAGCAGTACAAGAGTCGACTTTAG 59.146 45.833 21.08 14.25 0.00 1.85
492 493 4.519730 AGCAGTACAAGAGTCGACTTTAGT 59.480 41.667 21.08 18.97 0.00 2.24
493 494 4.617645 GCAGTACAAGAGTCGACTTTAGTG 59.382 45.833 21.08 19.44 0.00 2.74
494 495 5.759963 CAGTACAAGAGTCGACTTTAGTGT 58.240 41.667 21.08 20.82 0.00 3.55
495 496 6.207213 CAGTACAAGAGTCGACTTTAGTGTT 58.793 40.000 21.08 8.14 0.00 3.32
496 497 6.142480 CAGTACAAGAGTCGACTTTAGTGTTG 59.858 42.308 21.08 14.04 0.00 3.33
497 498 4.369182 ACAAGAGTCGACTTTAGTGTTGG 58.631 43.478 21.08 4.93 0.00 3.77
498 499 4.142004 ACAAGAGTCGACTTTAGTGTTGGT 60.142 41.667 21.08 5.53 0.00 3.67
499 500 5.068198 ACAAGAGTCGACTTTAGTGTTGGTA 59.932 40.000 21.08 0.00 0.00 3.25
500 501 5.373981 AGAGTCGACTTTAGTGTTGGTAG 57.626 43.478 21.08 0.00 0.00 3.18
501 502 4.826183 AGAGTCGACTTTAGTGTTGGTAGT 59.174 41.667 21.08 0.00 0.00 2.73
502 503 5.301298 AGAGTCGACTTTAGTGTTGGTAGTT 59.699 40.000 21.08 0.00 0.00 2.24
503 504 5.287226 AGTCGACTTTAGTGTTGGTAGTTG 58.713 41.667 13.58 0.00 0.00 3.16
504 505 4.446719 GTCGACTTTAGTGTTGGTAGTTGG 59.553 45.833 8.70 0.00 0.00 3.77
505 506 3.185797 CGACTTTAGTGTTGGTAGTTGGC 59.814 47.826 0.00 0.00 0.00 4.52
506 507 4.386711 GACTTTAGTGTTGGTAGTTGGCT 58.613 43.478 0.00 0.00 0.00 4.75
507 508 4.788679 ACTTTAGTGTTGGTAGTTGGCTT 58.211 39.130 0.00 0.00 0.00 4.35
508 509 4.578928 ACTTTAGTGTTGGTAGTTGGCTTG 59.421 41.667 0.00 0.00 0.00 4.01
509 510 1.981256 AGTGTTGGTAGTTGGCTTGG 58.019 50.000 0.00 0.00 0.00 3.61
510 511 0.313987 GTGTTGGTAGTTGGCTTGGC 59.686 55.000 0.00 0.00 0.00 4.52
511 512 1.169661 TGTTGGTAGTTGGCTTGGCG 61.170 55.000 0.00 0.00 0.00 5.69
512 513 1.149627 TTGGTAGTTGGCTTGGCGT 59.850 52.632 0.00 0.00 0.00 5.68
513 514 0.887387 TTGGTAGTTGGCTTGGCGTC 60.887 55.000 0.00 0.00 0.00 5.19
514 515 1.302192 GGTAGTTGGCTTGGCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
515 516 0.676782 GGTAGTTGGCTTGGCGTCAT 60.677 55.000 0.00 0.00 0.00 3.06
516 517 1.165270 GTAGTTGGCTTGGCGTCATT 58.835 50.000 0.00 0.00 0.00 2.57
517 518 1.135689 GTAGTTGGCTTGGCGTCATTG 60.136 52.381 0.00 0.00 0.00 2.82
518 519 1.080569 GTTGGCTTGGCGTCATTGG 60.081 57.895 0.00 0.00 0.00 3.16
519 520 2.274645 TTGGCTTGGCGTCATTGGG 61.275 57.895 0.00 0.00 0.00 4.12
520 521 3.451894 GGCTTGGCGTCATTGGGG 61.452 66.667 0.00 0.00 0.00 4.96
521 522 2.361104 GCTTGGCGTCATTGGGGA 60.361 61.111 0.00 0.00 0.00 4.81
522 523 1.754234 GCTTGGCGTCATTGGGGAT 60.754 57.895 0.00 0.00 0.00 3.85
523 524 1.322538 GCTTGGCGTCATTGGGGATT 61.323 55.000 0.00 0.00 0.00 3.01
524 525 1.185315 CTTGGCGTCATTGGGGATTT 58.815 50.000 0.00 0.00 0.00 2.17
525 526 0.894141 TTGGCGTCATTGGGGATTTG 59.106 50.000 0.00 0.00 0.00 2.32
526 527 0.969917 TGGCGTCATTGGGGATTTGG 60.970 55.000 0.00 0.00 0.00 3.28
527 528 0.682855 GGCGTCATTGGGGATTTGGA 60.683 55.000 0.00 0.00 0.00 3.53
528 529 0.740737 GCGTCATTGGGGATTTGGAG 59.259 55.000 0.00 0.00 0.00 3.86
529 530 1.955208 GCGTCATTGGGGATTTGGAGT 60.955 52.381 0.00 0.00 0.00 3.85
530 531 2.446435 CGTCATTGGGGATTTGGAGTT 58.554 47.619 0.00 0.00 0.00 3.01
531 532 3.616219 CGTCATTGGGGATTTGGAGTTA 58.384 45.455 0.00 0.00 0.00 2.24
532 533 3.377172 CGTCATTGGGGATTTGGAGTTAC 59.623 47.826 0.00 0.00 0.00 2.50
533 534 4.600062 GTCATTGGGGATTTGGAGTTACT 58.400 43.478 0.00 0.00 0.00 2.24
534 535 5.016831 GTCATTGGGGATTTGGAGTTACTT 58.983 41.667 0.00 0.00 0.00 2.24
535 536 5.016173 TCATTGGGGATTTGGAGTTACTTG 58.984 41.667 0.00 0.00 0.00 3.16
536 537 2.802719 TGGGGATTTGGAGTTACTTGC 58.197 47.619 0.00 0.00 0.00 4.01
537 538 2.100197 GGGGATTTGGAGTTACTTGCC 58.900 52.381 0.00 0.00 0.00 4.52
538 539 2.556559 GGGGATTTGGAGTTACTTGCCA 60.557 50.000 0.00 0.00 0.00 4.92
539 540 3.161866 GGGATTTGGAGTTACTTGCCAA 58.838 45.455 1.93 1.93 39.75 4.52
540 541 3.056821 GGGATTTGGAGTTACTTGCCAAC 60.057 47.826 5.20 0.00 41.08 3.77
541 542 3.826729 GGATTTGGAGTTACTTGCCAACT 59.173 43.478 5.20 1.04 41.08 3.16
547 548 3.508845 AGTTACTTGCCAACTCACCAT 57.491 42.857 0.00 0.00 30.36 3.55
548 549 3.832527 AGTTACTTGCCAACTCACCATT 58.167 40.909 0.00 0.00 30.36 3.16
549 550 3.569701 AGTTACTTGCCAACTCACCATTG 59.430 43.478 0.00 0.00 30.36 2.82
550 551 0.675633 ACTTGCCAACTCACCATTGC 59.324 50.000 0.00 0.00 0.00 3.56
551 552 0.037975 CTTGCCAACTCACCATTGCC 60.038 55.000 0.00 0.00 0.00 4.52
552 553 0.469705 TTGCCAACTCACCATTGCCT 60.470 50.000 0.00 0.00 0.00 4.75
553 554 1.180456 TGCCAACTCACCATTGCCTG 61.180 55.000 0.00 0.00 0.00 4.85
554 555 1.181098 GCCAACTCACCATTGCCTGT 61.181 55.000 0.00 0.00 0.00 4.00
555 556 1.331214 CCAACTCACCATTGCCTGTT 58.669 50.000 0.00 0.00 0.00 3.16
556 557 1.000060 CCAACTCACCATTGCCTGTTG 60.000 52.381 0.00 0.00 35.82 3.33
557 558 1.682854 CAACTCACCATTGCCTGTTGT 59.317 47.619 0.00 0.00 32.70 3.32
558 559 1.321474 ACTCACCATTGCCTGTTGTG 58.679 50.000 0.00 0.00 0.00 3.33
559 560 1.133823 ACTCACCATTGCCTGTTGTGA 60.134 47.619 0.00 0.00 34.95 3.58
560 561 2.165167 CTCACCATTGCCTGTTGTGAT 58.835 47.619 0.00 0.00 35.59 3.06
561 562 3.244875 ACTCACCATTGCCTGTTGTGATA 60.245 43.478 0.00 0.00 35.59 2.15
562 563 3.758023 CTCACCATTGCCTGTTGTGATAA 59.242 43.478 0.00 0.00 35.59 1.75
563 564 4.343231 TCACCATTGCCTGTTGTGATAAT 58.657 39.130 0.00 0.00 31.45 1.28
564 565 4.158209 TCACCATTGCCTGTTGTGATAATG 59.842 41.667 0.00 0.00 31.45 1.90
565 566 3.448301 ACCATTGCCTGTTGTGATAATGG 59.552 43.478 11.15 11.15 46.14 3.16
566 567 3.700539 CCATTGCCTGTTGTGATAATGGA 59.299 43.478 7.80 0.00 44.46 3.41
567 568 4.160065 CCATTGCCTGTTGTGATAATGGAA 59.840 41.667 7.80 0.00 44.46 3.53
568 569 5.345702 CATTGCCTGTTGTGATAATGGAAG 58.654 41.667 0.00 0.00 0.00 3.46
569 570 4.032960 TGCCTGTTGTGATAATGGAAGT 57.967 40.909 0.00 0.00 0.00 3.01
570 571 3.758023 TGCCTGTTGTGATAATGGAAGTG 59.242 43.478 0.00 0.00 0.00 3.16
571 572 4.009675 GCCTGTTGTGATAATGGAAGTGA 58.990 43.478 0.00 0.00 0.00 3.41
572 573 4.142600 GCCTGTTGTGATAATGGAAGTGAC 60.143 45.833 0.00 0.00 0.00 3.67
573 574 4.396166 CCTGTTGTGATAATGGAAGTGACC 59.604 45.833 0.00 0.00 0.00 4.02
574 575 5.241403 TGTTGTGATAATGGAAGTGACCT 57.759 39.130 0.00 0.00 0.00 3.85
575 576 5.630121 TGTTGTGATAATGGAAGTGACCTT 58.370 37.500 0.00 0.00 0.00 3.50
576 577 6.068010 TGTTGTGATAATGGAAGTGACCTTT 58.932 36.000 0.00 0.00 0.00 3.11
577 578 6.549364 TGTTGTGATAATGGAAGTGACCTTTT 59.451 34.615 0.00 0.00 0.00 2.27
578 579 6.817765 TGTGATAATGGAAGTGACCTTTTC 57.182 37.500 0.00 0.00 0.00 2.29
579 580 6.542821 TGTGATAATGGAAGTGACCTTTTCT 58.457 36.000 0.00 0.00 0.00 2.52
641 642 4.530553 TGTACTCAGTTTTGCCCTCAGATA 59.469 41.667 0.00 0.00 0.00 1.98
646 647 3.125316 CAGTTTTGCCCTCAGATACGAAC 59.875 47.826 0.00 0.00 0.00 3.95
652 653 1.204704 CCCTCAGATACGAACTGTGCA 59.795 52.381 0.00 0.00 36.81 4.57
668 669 2.872245 TGTGCACAGTTTTGTCTCTAGC 59.128 45.455 17.42 0.00 34.62 3.42
670 671 2.104792 TGCACAGTTTTGTCTCTAGCCT 59.895 45.455 0.00 0.00 34.62 4.58
876 892 4.057428 ACGGCGACAGAGAGCACC 62.057 66.667 16.62 0.00 34.54 5.01
899 919 1.009389 GTGACCACGGCGAAAGAGAG 61.009 60.000 16.62 0.00 0.00 3.20
900 920 1.176619 TGACCACGGCGAAAGAGAGA 61.177 55.000 16.62 0.00 0.00 3.10
953 973 4.770874 GCGGCGGTGGGAAGCTAA 62.771 66.667 9.78 0.00 0.00 3.09
993 1014 0.617535 TTGAGATCCCTTCGGCTCCA 60.618 55.000 0.00 0.00 0.00 3.86
1117 1138 1.257743 TCGGAGGGTTTCTCAGACAG 58.742 55.000 0.00 0.00 44.19 3.51
1255 1276 2.309613 TGCAGGTGACATGCTTCTTTT 58.690 42.857 23.05 0.00 44.17 2.27
1934 1958 6.826231 TGTGGAAGCTAATTGAATTATTCCGA 59.174 34.615 18.35 9.83 36.98 4.55
2043 2067 1.250328 TGGAAAATGTGCCTCAGCTG 58.750 50.000 7.63 7.63 40.80 4.24
2082 2107 5.303971 CCAGGTGCCAAAATAAATGAACAA 58.696 37.500 0.00 0.00 0.00 2.83
2203 2233 1.065109 GCGTGGGTTTGTGGTGTTC 59.935 57.895 0.00 0.00 0.00 3.18
2208 2238 0.106419 GGGTTTGTGGTGTTCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
2235 2265 1.538419 GGTAACCGCTAGGACAGATGC 60.538 57.143 0.00 0.00 41.02 3.91
2245 2275 3.515602 AGGACAGATGCCAAGACTTTT 57.484 42.857 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.893682 AATAGCCTCAACCTGCCGCC 62.894 60.000 0.00 0.00 0.00 6.13
16 17 1.452108 AATAGCCTCAACCTGCCGC 60.452 57.895 0.00 0.00 0.00 6.53
17 18 0.392998 ACAATAGCCTCAACCTGCCG 60.393 55.000 0.00 0.00 0.00 5.69
18 19 1.474077 CAACAATAGCCTCAACCTGCC 59.526 52.381 0.00 0.00 0.00 4.85
19 20 1.135286 GCAACAATAGCCTCAACCTGC 60.135 52.381 0.00 0.00 0.00 4.85
20 21 2.927553 GCAACAATAGCCTCAACCTG 57.072 50.000 0.00 0.00 0.00 4.00
29 30 2.100216 CGTGGCGGCAACAATAGC 59.900 61.111 15.50 0.00 0.00 2.97
30 31 0.239879 AAACGTGGCGGCAACAATAG 59.760 50.000 15.50 3.75 0.00 1.73
31 32 0.238817 GAAACGTGGCGGCAACAATA 59.761 50.000 15.50 0.00 0.00 1.90
32 33 1.007849 GAAACGTGGCGGCAACAAT 60.008 52.632 15.50 0.00 0.00 2.71
33 34 2.407428 TGAAACGTGGCGGCAACAA 61.407 52.632 15.50 0.00 0.00 2.83
34 35 2.824489 TGAAACGTGGCGGCAACA 60.824 55.556 15.50 6.60 0.00 3.33
35 36 2.353030 GTGAAACGTGGCGGCAAC 60.353 61.111 15.50 2.76 0.00 4.17
56 57 2.186384 CCTCCGCTGCTCCTCAAG 59.814 66.667 0.00 0.00 0.00 3.02
57 58 3.393970 CCCTCCGCTGCTCCTCAA 61.394 66.667 0.00 0.00 0.00 3.02
58 59 4.382541 TCCCTCCGCTGCTCCTCA 62.383 66.667 0.00 0.00 0.00 3.86
59 60 3.535962 CTCCCTCCGCTGCTCCTC 61.536 72.222 0.00 0.00 0.00 3.71
60 61 3.608759 TTCTCCCTCCGCTGCTCCT 62.609 63.158 0.00 0.00 0.00 3.69
61 62 3.077556 TTCTCCCTCCGCTGCTCC 61.078 66.667 0.00 0.00 0.00 4.70
62 63 2.498726 CTTCTCCCTCCGCTGCTC 59.501 66.667 0.00 0.00 0.00 4.26
63 64 3.780173 GCTTCTCCCTCCGCTGCT 61.780 66.667 0.00 0.00 0.00 4.24
64 65 4.087892 TGCTTCTCCCTCCGCTGC 62.088 66.667 0.00 0.00 0.00 5.25
65 66 2.186384 CTGCTTCTCCCTCCGCTG 59.814 66.667 0.00 0.00 0.00 5.18
66 67 2.038007 TCTGCTTCTCCCTCCGCT 59.962 61.111 0.00 0.00 0.00 5.52
67 68 2.291457 GACTCTGCTTCTCCCTCCGC 62.291 65.000 0.00 0.00 0.00 5.54
68 69 0.967887 TGACTCTGCTTCTCCCTCCG 60.968 60.000 0.00 0.00 0.00 4.63
69 70 0.823460 CTGACTCTGCTTCTCCCTCC 59.177 60.000 0.00 0.00 0.00 4.30
70 71 0.823460 CCTGACTCTGCTTCTCCCTC 59.177 60.000 0.00 0.00 0.00 4.30
71 72 0.411452 TCCTGACTCTGCTTCTCCCT 59.589 55.000 0.00 0.00 0.00 4.20
72 73 0.534873 GTCCTGACTCTGCTTCTCCC 59.465 60.000 0.00 0.00 0.00 4.30
73 74 0.172352 CGTCCTGACTCTGCTTCTCC 59.828 60.000 0.00 0.00 0.00 3.71
74 75 1.169577 TCGTCCTGACTCTGCTTCTC 58.830 55.000 0.00 0.00 0.00 2.87
75 76 1.476085 CATCGTCCTGACTCTGCTTCT 59.524 52.381 0.00 0.00 0.00 2.85
76 77 1.919918 CATCGTCCTGACTCTGCTTC 58.080 55.000 0.00 0.00 0.00 3.86
77 78 0.108424 GCATCGTCCTGACTCTGCTT 60.108 55.000 11.43 0.00 35.15 3.91
78 79 1.253593 TGCATCGTCCTGACTCTGCT 61.254 55.000 16.62 0.00 37.32 4.24
79 80 0.805322 CTGCATCGTCCTGACTCTGC 60.805 60.000 11.67 11.67 37.10 4.26
80 81 0.813821 TCTGCATCGTCCTGACTCTG 59.186 55.000 0.00 0.00 0.00 3.35
81 82 1.102154 CTCTGCATCGTCCTGACTCT 58.898 55.000 0.00 0.00 0.00 3.24
82 83 0.102120 CCTCTGCATCGTCCTGACTC 59.898 60.000 0.00 0.00 0.00 3.36
83 84 0.323816 TCCTCTGCATCGTCCTGACT 60.324 55.000 0.00 0.00 0.00 3.41
84 85 0.102120 CTCCTCTGCATCGTCCTGAC 59.898 60.000 0.00 0.00 0.00 3.51
85 86 1.039785 CCTCCTCTGCATCGTCCTGA 61.040 60.000 0.00 0.00 0.00 3.86
86 87 1.326213 ACCTCCTCTGCATCGTCCTG 61.326 60.000 0.00 0.00 0.00 3.86
87 88 0.259065 TACCTCCTCTGCATCGTCCT 59.741 55.000 0.00 0.00 0.00 3.85
88 89 0.671251 CTACCTCCTCTGCATCGTCC 59.329 60.000 0.00 0.00 0.00 4.79
89 90 0.031449 GCTACCTCCTCTGCATCGTC 59.969 60.000 0.00 0.00 0.00 4.20
90 91 0.684479 TGCTACCTCCTCTGCATCGT 60.684 55.000 0.00 0.00 0.00 3.73
91 92 0.678395 ATGCTACCTCCTCTGCATCG 59.322 55.000 0.00 0.00 41.60 3.84
92 93 1.877258 GCATGCTACCTCCTCTGCATC 60.877 57.143 11.37 0.00 43.24 3.91
93 94 0.108207 GCATGCTACCTCCTCTGCAT 59.892 55.000 11.37 0.00 45.57 3.96
94 95 1.524002 GCATGCTACCTCCTCTGCA 59.476 57.895 11.37 0.00 39.83 4.41
95 96 1.593750 CGCATGCTACCTCCTCTGC 60.594 63.158 17.13 0.00 0.00 4.26
96 97 0.249238 GTCGCATGCTACCTCCTCTG 60.249 60.000 17.13 0.00 0.00 3.35
97 98 0.396417 AGTCGCATGCTACCTCCTCT 60.396 55.000 17.93 0.00 0.00 3.69
98 99 0.461961 AAGTCGCATGCTACCTCCTC 59.538 55.000 17.93 0.00 0.00 3.71
99 100 0.176680 CAAGTCGCATGCTACCTCCT 59.823 55.000 17.93 0.00 0.00 3.69
100 101 1.432270 GCAAGTCGCATGCTACCTCC 61.432 60.000 17.93 3.73 40.64 4.30
101 102 2.009888 GCAAGTCGCATGCTACCTC 58.990 57.895 17.93 4.80 40.64 3.85
102 103 4.208632 GCAAGTCGCATGCTACCT 57.791 55.556 17.93 3.03 40.64 3.08
107 108 2.503375 GTGCAGCAAGTCGCATGC 60.503 61.111 7.91 7.91 46.13 4.06
108 109 2.202260 CGTGCAGCAAGTCGCATG 60.202 61.111 0.00 0.00 46.13 4.06
109 110 3.425713 CCGTGCAGCAAGTCGCAT 61.426 61.111 7.60 0.00 46.13 4.73
113 114 3.058160 ATGGCCGTGCAGCAAGTC 61.058 61.111 7.60 0.00 0.00 3.01
114 115 3.367743 CATGGCCGTGCAGCAAGT 61.368 61.111 13.11 0.00 0.00 3.16
115 116 4.124351 CCATGGCCGTGCAGCAAG 62.124 66.667 20.27 0.00 0.00 4.01
116 117 4.972733 ACCATGGCCGTGCAGCAA 62.973 61.111 20.27 0.00 0.00 3.91
119 120 2.981560 GAACACCATGGCCGTGCAG 61.982 63.158 20.27 15.50 34.45 4.41
120 121 2.983030 GAACACCATGGCCGTGCA 60.983 61.111 20.27 0.00 34.45 4.57
121 122 2.342650 ATGAACACCATGGCCGTGC 61.343 57.895 20.27 8.91 34.45 5.34
122 123 1.507630 CATGAACACCATGGCCGTG 59.492 57.895 18.73 18.73 46.85 4.94
123 124 4.001248 CATGAACACCATGGCCGT 57.999 55.556 13.04 6.62 46.85 5.68
129 130 1.830279 CCACTGCTCATGAACACCAT 58.170 50.000 0.00 0.00 35.44 3.55
130 131 0.890542 GCCACTGCTCATGAACACCA 60.891 55.000 0.00 0.00 33.53 4.17
131 132 1.878775 GCCACTGCTCATGAACACC 59.121 57.895 0.00 0.00 33.53 4.16
132 133 1.499056 CGCCACTGCTCATGAACAC 59.501 57.895 0.00 0.00 34.43 3.32
133 134 1.672030 CCGCCACTGCTCATGAACA 60.672 57.895 0.00 0.00 34.43 3.18
134 135 1.364626 CTCCGCCACTGCTCATGAAC 61.365 60.000 0.00 0.00 34.43 3.18
135 136 1.078918 CTCCGCCACTGCTCATGAA 60.079 57.895 0.00 0.00 34.43 2.57
136 137 2.580815 CTCCGCCACTGCTCATGA 59.419 61.111 0.00 0.00 34.43 3.07
137 138 3.200593 GCTCCGCCACTGCTCATG 61.201 66.667 0.00 0.00 34.43 3.07
138 139 2.866085 GAAGCTCCGCCACTGCTCAT 62.866 60.000 0.00 0.00 35.85 2.90
139 140 3.596066 GAAGCTCCGCCACTGCTCA 62.596 63.158 0.00 0.00 35.85 4.26
140 141 2.817396 GAAGCTCCGCCACTGCTC 60.817 66.667 0.00 0.00 35.85 4.26
141 142 2.964310 ATGAAGCTCCGCCACTGCT 61.964 57.895 0.00 0.00 38.87 4.24
142 143 2.437359 ATGAAGCTCCGCCACTGC 60.437 61.111 0.00 0.00 0.00 4.40
143 144 2.110967 CCATGAAGCTCCGCCACTG 61.111 63.158 0.00 0.00 0.00 3.66
144 145 2.270205 CCATGAAGCTCCGCCACT 59.730 61.111 0.00 0.00 0.00 4.00
145 146 2.825836 CCCATGAAGCTCCGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
146 147 4.113815 CCCCATGAAGCTCCGCCA 62.114 66.667 0.00 0.00 0.00 5.69
147 148 4.883354 CCCCCATGAAGCTCCGCC 62.883 72.222 0.00 0.00 0.00 6.13
149 150 4.883354 GGCCCCCATGAAGCTCCG 62.883 72.222 0.00 0.00 0.00 4.63
150 151 3.301222 TTGGCCCCCATGAAGCTCC 62.301 63.158 0.00 0.00 31.53 4.70
151 152 2.054453 GTTGGCCCCCATGAAGCTC 61.054 63.158 0.00 0.00 31.53 4.09
152 153 2.037847 GTTGGCCCCCATGAAGCT 59.962 61.111 0.00 0.00 31.53 3.74
153 154 3.076916 GGTTGGCCCCCATGAAGC 61.077 66.667 0.00 0.00 31.53 3.86
154 155 1.079073 AAGGTTGGCCCCCATGAAG 59.921 57.895 10.93 0.00 31.53 3.02
155 156 1.229145 CAAGGTTGGCCCCCATGAA 60.229 57.895 10.93 0.00 31.53 2.57
156 157 2.444696 CAAGGTTGGCCCCCATGA 59.555 61.111 10.93 0.00 31.53 3.07
157 158 2.684655 CCAAGGTTGGCCCCCATG 60.685 66.667 10.93 8.75 42.21 3.66
202 203 9.231297 GGTCAAATACACAGGTATATATGCAAT 57.769 33.333 3.10 0.00 39.28 3.56
203 204 7.663905 GGGTCAAATACACAGGTATATATGCAA 59.336 37.037 3.10 0.00 39.28 4.08
204 205 7.165485 GGGTCAAATACACAGGTATATATGCA 58.835 38.462 3.10 0.00 39.28 3.96
205 206 7.165485 TGGGTCAAATACACAGGTATATATGC 58.835 38.462 0.00 0.00 36.25 3.14
217 218 6.575162 AGTGAAAAGATGGGTCAAATACAC 57.425 37.500 0.00 0.00 0.00 2.90
218 219 8.698973 TTTAGTGAAAAGATGGGTCAAATACA 57.301 30.769 0.00 0.00 0.00 2.29
219 220 9.974980 TTTTTAGTGAAAAGATGGGTCAAATAC 57.025 29.630 0.00 0.00 35.96 1.89
221 222 9.710900 GATTTTTAGTGAAAAGATGGGTCAAAT 57.289 29.630 0.00 0.00 40.35 2.32
222 223 8.700051 TGATTTTTAGTGAAAAGATGGGTCAAA 58.300 29.630 0.00 0.00 40.35 2.69
223 224 8.243961 TGATTTTTAGTGAAAAGATGGGTCAA 57.756 30.769 0.00 0.00 40.35 3.18
224 225 7.523709 GCTGATTTTTAGTGAAAAGATGGGTCA 60.524 37.037 0.00 0.00 40.35 4.02
225 226 6.808704 GCTGATTTTTAGTGAAAAGATGGGTC 59.191 38.462 0.00 0.00 40.35 4.46
226 227 6.267471 TGCTGATTTTTAGTGAAAAGATGGGT 59.733 34.615 0.00 0.00 40.35 4.51
227 228 6.690530 TGCTGATTTTTAGTGAAAAGATGGG 58.309 36.000 0.00 0.00 40.35 4.00
243 244 8.231837 GCAAACAAAATCACAATATGCTGATTT 58.768 29.630 12.20 12.20 45.09 2.17
244 245 7.148373 GGCAAACAAAATCACAATATGCTGATT 60.148 33.333 3.32 3.32 38.50 2.57
245 246 6.314400 GGCAAACAAAATCACAATATGCTGAT 59.686 34.615 0.00 0.00 0.00 2.90
246 247 5.638657 GGCAAACAAAATCACAATATGCTGA 59.361 36.000 0.00 0.00 0.00 4.26
247 248 5.163834 GGGCAAACAAAATCACAATATGCTG 60.164 40.000 0.00 0.00 0.00 4.41
248 249 4.937015 GGGCAAACAAAATCACAATATGCT 59.063 37.500 0.00 0.00 0.00 3.79
249 250 4.094739 GGGGCAAACAAAATCACAATATGC 59.905 41.667 0.00 0.00 0.00 3.14
250 251 5.490159 AGGGGCAAACAAAATCACAATATG 58.510 37.500 0.00 0.00 0.00 1.78
251 252 5.338300 GGAGGGGCAAACAAAATCACAATAT 60.338 40.000 0.00 0.00 0.00 1.28
252 253 4.020662 GGAGGGGCAAACAAAATCACAATA 60.021 41.667 0.00 0.00 0.00 1.90
253 254 3.244526 GGAGGGGCAAACAAAATCACAAT 60.245 43.478 0.00 0.00 0.00 2.71
254 255 2.103941 GGAGGGGCAAACAAAATCACAA 59.896 45.455 0.00 0.00 0.00 3.33
255 256 1.691434 GGAGGGGCAAACAAAATCACA 59.309 47.619 0.00 0.00 0.00 3.58
256 257 1.970640 AGGAGGGGCAAACAAAATCAC 59.029 47.619 0.00 0.00 0.00 3.06
257 258 2.397044 AGGAGGGGCAAACAAAATCA 57.603 45.000 0.00 0.00 0.00 2.57
258 259 2.166459 GCTAGGAGGGGCAAACAAAATC 59.834 50.000 0.00 0.00 0.00 2.17
259 260 2.179427 GCTAGGAGGGGCAAACAAAAT 58.821 47.619 0.00 0.00 0.00 1.82
260 261 1.627864 GCTAGGAGGGGCAAACAAAA 58.372 50.000 0.00 0.00 0.00 2.44
261 262 0.251608 GGCTAGGAGGGGCAAACAAA 60.252 55.000 0.00 0.00 0.00 2.83
262 263 1.382629 GGCTAGGAGGGGCAAACAA 59.617 57.895 0.00 0.00 0.00 2.83
263 264 1.431195 TTGGCTAGGAGGGGCAAACA 61.431 55.000 0.00 0.00 44.18 2.83
264 265 1.382629 TTGGCTAGGAGGGGCAAAC 59.617 57.895 0.00 0.00 44.18 2.93
265 266 3.930144 TTGGCTAGGAGGGGCAAA 58.070 55.556 0.00 0.00 44.18 3.68
267 268 3.060614 GCATTGGCTAGGAGGGGCA 62.061 63.158 0.00 0.00 36.96 5.36
268 269 2.203408 GCATTGGCTAGGAGGGGC 60.203 66.667 0.00 0.00 36.96 5.80
269 270 2.517919 GGCATTGGCTAGGAGGGG 59.482 66.667 2.42 0.00 40.87 4.79
270 271 2.517919 GGGCATTGGCTAGGAGGG 59.482 66.667 10.31 0.00 40.87 4.30
271 272 2.517919 GGGGCATTGGCTAGGAGG 59.482 66.667 10.31 0.00 40.87 4.30
272 273 2.517919 GGGGGCATTGGCTAGGAG 59.482 66.667 10.31 0.00 40.87 3.69
287 288 2.041701 CTTGGGCTAAAATCATGGGGG 58.958 52.381 0.00 0.00 0.00 5.40
288 289 1.413812 GCTTGGGCTAAAATCATGGGG 59.586 52.381 0.00 0.00 35.22 4.96
289 290 2.896745 GCTTGGGCTAAAATCATGGG 57.103 50.000 0.00 0.00 35.22 4.00
308 309 0.742281 CCTCATGAACAGTGGCGGAG 60.742 60.000 0.00 0.00 0.00 4.63
309 310 1.296392 CCTCATGAACAGTGGCGGA 59.704 57.895 0.00 0.00 0.00 5.54
310 311 1.746615 CCCTCATGAACAGTGGCGG 60.747 63.158 0.00 0.00 0.00 6.13
311 312 2.401766 GCCCTCATGAACAGTGGCG 61.402 63.158 0.00 0.00 0.00 5.69
312 313 2.401766 CGCCCTCATGAACAGTGGC 61.402 63.158 0.00 3.52 35.55 5.01
313 314 0.249120 TACGCCCTCATGAACAGTGG 59.751 55.000 0.00 0.00 0.00 4.00
314 315 1.204704 TCTACGCCCTCATGAACAGTG 59.795 52.381 0.00 0.00 0.00 3.66
315 316 1.478510 CTCTACGCCCTCATGAACAGT 59.521 52.381 0.00 0.00 0.00 3.55
316 317 1.478510 ACTCTACGCCCTCATGAACAG 59.521 52.381 0.00 0.00 0.00 3.16
317 318 1.204704 CACTCTACGCCCTCATGAACA 59.795 52.381 0.00 0.00 0.00 3.18
318 319 1.476891 TCACTCTACGCCCTCATGAAC 59.523 52.381 0.00 0.00 0.00 3.18
319 320 1.751351 CTCACTCTACGCCCTCATGAA 59.249 52.381 0.00 0.00 0.00 2.57
320 321 1.393603 CTCACTCTACGCCCTCATGA 58.606 55.000 0.00 0.00 0.00 3.07
321 322 0.249238 GCTCACTCTACGCCCTCATG 60.249 60.000 0.00 0.00 0.00 3.07
322 323 1.729470 CGCTCACTCTACGCCCTCAT 61.729 60.000 0.00 0.00 0.00 2.90
323 324 2.407428 CGCTCACTCTACGCCCTCA 61.407 63.158 0.00 0.00 0.00 3.86
324 325 2.409651 CGCTCACTCTACGCCCTC 59.590 66.667 0.00 0.00 0.00 4.30
325 326 3.827898 GCGCTCACTCTACGCCCT 61.828 66.667 0.00 0.00 46.63 5.19
329 330 3.241059 GCACGCGCTCACTCTACG 61.241 66.667 5.73 0.00 34.30 3.51
330 331 2.126463 TGCACGCGCTCACTCTAC 60.126 61.111 5.73 0.00 39.64 2.59
331 332 2.142357 AACTGCACGCGCTCACTCTA 62.142 55.000 5.73 0.00 39.64 2.43
332 333 3.506059 AACTGCACGCGCTCACTCT 62.506 57.895 5.73 0.00 39.64 3.24
333 334 3.004734 GAACTGCACGCGCTCACTC 62.005 63.158 5.73 0.00 39.64 3.51
334 335 3.038417 GAACTGCACGCGCTCACT 61.038 61.111 5.73 0.00 39.64 3.41
335 336 2.671177 ATGAACTGCACGCGCTCAC 61.671 57.895 5.73 0.00 39.64 3.51
336 337 2.357396 ATGAACTGCACGCGCTCA 60.357 55.556 5.73 2.83 39.64 4.26
337 338 2.097160 CATGAACTGCACGCGCTC 59.903 61.111 5.73 0.00 39.64 5.03
338 339 2.357396 TCATGAACTGCACGCGCT 60.357 55.556 5.73 0.00 39.64 5.92
339 340 2.097160 CTCATGAACTGCACGCGC 59.903 61.111 5.73 0.00 39.24 6.86
340 341 2.743752 CCCTCATGAACTGCACGCG 61.744 63.158 3.53 3.53 0.00 6.01
341 342 3.044059 GCCCTCATGAACTGCACGC 62.044 63.158 0.00 0.00 0.00 5.34
342 343 2.743752 CGCCCTCATGAACTGCACG 61.744 63.158 0.00 0.00 0.00 5.34
343 344 0.391130 TACGCCCTCATGAACTGCAC 60.391 55.000 0.00 0.00 0.00 4.57
344 345 0.108186 CTACGCCCTCATGAACTGCA 60.108 55.000 0.00 0.00 0.00 4.41
345 346 0.175760 TCTACGCCCTCATGAACTGC 59.824 55.000 0.00 0.00 0.00 4.40
346 347 1.478510 ACTCTACGCCCTCATGAACTG 59.521 52.381 0.00 0.00 0.00 3.16
347 348 1.478510 CACTCTACGCCCTCATGAACT 59.521 52.381 0.00 0.00 0.00 3.01
348 349 1.476891 TCACTCTACGCCCTCATGAAC 59.523 52.381 0.00 0.00 0.00 3.18
349 350 1.751351 CTCACTCTACGCCCTCATGAA 59.249 52.381 0.00 0.00 0.00 2.57
350 351 1.393603 CTCACTCTACGCCCTCATGA 58.606 55.000 0.00 0.00 0.00 3.07
351 352 0.249238 GCTCACTCTACGCCCTCATG 60.249 60.000 0.00 0.00 0.00 3.07
352 353 0.396417 AGCTCACTCTACGCCCTCAT 60.396 55.000 0.00 0.00 0.00 2.90
353 354 1.000771 AGCTCACTCTACGCCCTCA 60.001 57.895 0.00 0.00 0.00 3.86
354 355 1.730451 GGAGCTCACTCTACGCCCTC 61.730 65.000 17.19 0.00 42.98 4.30
355 356 1.755008 GGAGCTCACTCTACGCCCT 60.755 63.158 17.19 0.00 42.98 5.19
356 357 2.787567 GGGAGCTCACTCTACGCCC 61.788 68.421 17.19 0.06 42.98 6.13
357 358 2.010582 CTGGGAGCTCACTCTACGCC 62.011 65.000 18.70 5.97 42.98 5.68
358 359 1.032657 TCTGGGAGCTCACTCTACGC 61.033 60.000 18.70 0.00 42.98 4.42
359 360 1.336440 CATCTGGGAGCTCACTCTACG 59.664 57.143 18.70 0.63 42.98 3.51
360 361 1.686052 CCATCTGGGAGCTCACTCTAC 59.314 57.143 18.70 0.00 42.98 2.59
361 362 1.289231 ACCATCTGGGAGCTCACTCTA 59.711 52.381 18.70 2.50 42.98 2.43
362 363 0.042431 ACCATCTGGGAGCTCACTCT 59.958 55.000 18.70 0.00 42.98 3.24
363 364 0.463620 GACCATCTGGGAGCTCACTC 59.536 60.000 18.70 0.61 42.66 3.51
364 365 0.252421 TGACCATCTGGGAGCTCACT 60.252 55.000 18.70 0.00 41.15 3.41
365 366 0.107945 GTGACCATCTGGGAGCTCAC 60.108 60.000 17.19 13.72 41.15 3.51
366 367 0.252421 AGTGACCATCTGGGAGCTCA 60.252 55.000 17.19 0.00 41.15 4.26
367 368 0.908198 AAGTGACCATCTGGGAGCTC 59.092 55.000 4.71 4.71 41.15 4.09
368 369 0.908198 GAAGTGACCATCTGGGAGCT 59.092 55.000 0.54 0.00 41.15 4.09
369 370 0.908198 AGAAGTGACCATCTGGGAGC 59.092 55.000 0.54 0.00 41.15 4.70
370 371 2.304180 ACAAGAAGTGACCATCTGGGAG 59.696 50.000 0.54 0.00 41.15 4.30
371 372 2.338809 ACAAGAAGTGACCATCTGGGA 58.661 47.619 0.54 0.00 41.15 4.37
372 373 2.867109 ACAAGAAGTGACCATCTGGG 57.133 50.000 0.54 0.00 44.81 4.45
385 386 3.130280 TGCATGCTCTCTTCACAAGAA 57.870 42.857 20.33 0.00 37.02 2.52
386 387 2.845363 TGCATGCTCTCTTCACAAGA 57.155 45.000 20.33 0.00 35.87 3.02
387 388 2.030579 CGATGCATGCTCTCTTCACAAG 59.969 50.000 20.33 0.00 0.00 3.16
388 389 2.004733 CGATGCATGCTCTCTTCACAA 58.995 47.619 20.33 0.00 0.00 3.33
389 390 1.648504 CGATGCATGCTCTCTTCACA 58.351 50.000 20.33 0.00 0.00 3.58
390 391 0.304098 GCGATGCATGCTCTCTTCAC 59.696 55.000 20.33 2.53 0.00 3.18
391 392 0.177373 AGCGATGCATGCTCTCTTCA 59.823 50.000 20.33 0.00 38.62 3.02
392 393 2.989196 AGCGATGCATGCTCTCTTC 58.011 52.632 20.33 9.79 38.62 2.87
399 400 3.344215 CCCTCGAGCGATGCATGC 61.344 66.667 11.82 11.82 0.00 4.06
400 401 2.664185 CCCCTCGAGCGATGCATG 60.664 66.667 2.46 0.00 0.00 4.06
401 402 3.933722 CCCCCTCGAGCGATGCAT 61.934 66.667 6.99 0.00 0.00 3.96
403 404 2.574955 ATACCCCCTCGAGCGATGC 61.575 63.158 6.99 0.00 0.00 3.91
404 405 1.290324 CATACCCCCTCGAGCGATG 59.710 63.158 6.99 1.67 0.00 3.84
405 406 1.908793 CCATACCCCCTCGAGCGAT 60.909 63.158 6.99 0.00 0.00 4.58
406 407 2.520982 CCATACCCCCTCGAGCGA 60.521 66.667 6.99 0.00 0.00 4.93
407 408 3.616721 CCCATACCCCCTCGAGCG 61.617 72.222 6.99 0.00 0.00 5.03
408 409 2.122989 TCCCATACCCCCTCGAGC 60.123 66.667 6.99 0.00 0.00 5.03
409 410 0.689745 TTGTCCCATACCCCCTCGAG 60.690 60.000 5.13 5.13 0.00 4.04
410 411 0.252789 TTTGTCCCATACCCCCTCGA 60.253 55.000 0.00 0.00 0.00 4.04
411 412 0.843984 ATTTGTCCCATACCCCCTCG 59.156 55.000 0.00 0.00 0.00 4.63
412 413 3.750922 GCTTATTTGTCCCATACCCCCTC 60.751 52.174 0.00 0.00 0.00 4.30
413 414 2.177016 GCTTATTTGTCCCATACCCCCT 59.823 50.000 0.00 0.00 0.00 4.79
414 415 2.594131 GCTTATTTGTCCCATACCCCC 58.406 52.381 0.00 0.00 0.00 5.40
415 416 2.594131 GGCTTATTTGTCCCATACCCC 58.406 52.381 0.00 0.00 0.00 4.95
416 417 2.227194 CGGCTTATTTGTCCCATACCC 58.773 52.381 0.00 0.00 0.00 3.69
417 418 2.227194 CCGGCTTATTTGTCCCATACC 58.773 52.381 0.00 0.00 0.00 2.73
418 419 2.227194 CCCGGCTTATTTGTCCCATAC 58.773 52.381 0.00 0.00 0.00 2.39
419 420 1.847737 ACCCGGCTTATTTGTCCCATA 59.152 47.619 0.00 0.00 0.00 2.74
420 421 0.629058 ACCCGGCTTATTTGTCCCAT 59.371 50.000 0.00 0.00 0.00 4.00
421 422 0.034863 GACCCGGCTTATTTGTCCCA 60.035 55.000 0.00 0.00 0.00 4.37
422 423 0.034863 TGACCCGGCTTATTTGTCCC 60.035 55.000 0.00 0.00 0.00 4.46
423 424 1.092348 GTGACCCGGCTTATTTGTCC 58.908 55.000 0.00 0.00 0.00 4.02
424 425 2.007608 GAGTGACCCGGCTTATTTGTC 58.992 52.381 0.00 0.00 0.00 3.18
425 426 1.339727 GGAGTGACCCGGCTTATTTGT 60.340 52.381 0.00 0.00 0.00 2.83
426 427 1.339631 TGGAGTGACCCGGCTTATTTG 60.340 52.381 0.00 0.00 38.00 2.32
427 428 0.988832 TGGAGTGACCCGGCTTATTT 59.011 50.000 0.00 0.00 38.00 1.40
428 429 1.141053 GATGGAGTGACCCGGCTTATT 59.859 52.381 0.00 0.00 38.00 1.40
429 430 0.759346 GATGGAGTGACCCGGCTTAT 59.241 55.000 0.00 0.00 38.00 1.73
430 431 1.335132 GGATGGAGTGACCCGGCTTA 61.335 60.000 0.00 0.00 38.00 3.09
431 432 2.670148 GGATGGAGTGACCCGGCTT 61.670 63.158 0.00 0.00 38.00 4.35
432 433 3.083997 GGATGGAGTGACCCGGCT 61.084 66.667 0.00 0.00 38.00 5.52
433 434 2.478335 TTTGGATGGAGTGACCCGGC 62.478 60.000 0.00 0.00 38.00 6.13
434 435 0.255890 ATTTGGATGGAGTGACCCGG 59.744 55.000 0.00 0.00 38.00 5.73
435 436 3.492102 ATATTTGGATGGAGTGACCCG 57.508 47.619 0.00 0.00 38.00 5.28
436 437 4.536765 ACAATATTTGGATGGAGTGACCC 58.463 43.478 0.00 0.00 34.41 4.46
437 438 5.679638 GCAACAATATTTGGATGGAGTGACC 60.680 44.000 0.00 0.00 35.37 4.02
438 439 5.126061 AGCAACAATATTTGGATGGAGTGAC 59.874 40.000 0.00 0.00 34.12 3.67
439 440 5.125900 CAGCAACAATATTTGGATGGAGTGA 59.874 40.000 0.00 0.00 34.12 3.41
440 441 5.125900 TCAGCAACAATATTTGGATGGAGTG 59.874 40.000 0.00 0.00 34.12 3.51
441 442 5.263599 TCAGCAACAATATTTGGATGGAGT 58.736 37.500 0.00 0.00 34.12 3.85
442 443 5.359009 ACTCAGCAACAATATTTGGATGGAG 59.641 40.000 0.00 0.00 34.12 3.86
443 444 5.263599 ACTCAGCAACAATATTTGGATGGA 58.736 37.500 0.00 0.00 34.12 3.41
444 445 5.587388 ACTCAGCAACAATATTTGGATGG 57.413 39.130 0.00 0.00 34.12 3.51
445 446 7.087409 TGTACTCAGCAACAATATTTGGATG 57.913 36.000 0.00 0.00 34.12 3.51
446 447 7.325660 CTGTACTCAGCAACAATATTTGGAT 57.674 36.000 0.00 0.00 34.79 3.41
447 448 6.741992 CTGTACTCAGCAACAATATTTGGA 57.258 37.500 0.00 0.00 34.79 3.53
461 462 4.670478 CGACTCTTGTACTGCTGTACTCAG 60.670 50.000 27.54 22.90 46.70 3.35
462 463 3.188667 CGACTCTTGTACTGCTGTACTCA 59.811 47.826 27.54 16.69 46.70 3.41
463 464 3.436015 TCGACTCTTGTACTGCTGTACTC 59.564 47.826 27.54 17.95 46.70 2.59
464 465 3.188873 GTCGACTCTTGTACTGCTGTACT 59.811 47.826 27.54 12.41 46.70 2.73
465 466 3.188873 AGTCGACTCTTGTACTGCTGTAC 59.811 47.826 22.87 22.87 46.74 2.90
466 467 3.409570 AGTCGACTCTTGTACTGCTGTA 58.590 45.455 13.58 0.00 0.00 2.74
467 468 2.231529 AGTCGACTCTTGTACTGCTGT 58.768 47.619 13.58 0.66 0.00 4.40
468 469 2.999507 AGTCGACTCTTGTACTGCTG 57.000 50.000 13.58 0.00 0.00 4.41
469 470 4.519730 ACTAAAGTCGACTCTTGTACTGCT 59.480 41.667 20.33 0.00 0.00 4.24
470 471 4.617645 CACTAAAGTCGACTCTTGTACTGC 59.382 45.833 20.33 0.00 0.00 4.40
471 472 5.759963 ACACTAAAGTCGACTCTTGTACTG 58.240 41.667 20.33 10.19 0.00 2.74
472 473 6.207213 CAACACTAAAGTCGACTCTTGTACT 58.793 40.000 20.33 0.00 0.00 2.73
473 474 5.401674 CCAACACTAAAGTCGACTCTTGTAC 59.598 44.000 20.33 0.00 0.00 2.90
474 475 5.068198 ACCAACACTAAAGTCGACTCTTGTA 59.932 40.000 20.33 8.14 0.00 2.41
475 476 4.142004 ACCAACACTAAAGTCGACTCTTGT 60.142 41.667 20.33 15.70 0.00 3.16
476 477 4.369182 ACCAACACTAAAGTCGACTCTTG 58.631 43.478 20.33 15.08 0.00 3.02
477 478 4.667519 ACCAACACTAAAGTCGACTCTT 57.332 40.909 20.33 16.65 0.00 2.85
478 479 4.826183 ACTACCAACACTAAAGTCGACTCT 59.174 41.667 20.33 7.80 0.00 3.24
479 480 5.118642 ACTACCAACACTAAAGTCGACTC 57.881 43.478 20.33 0.00 0.00 3.36
480 481 5.287226 CAACTACCAACACTAAAGTCGACT 58.713 41.667 13.58 13.58 0.00 4.18
481 482 4.446719 CCAACTACCAACACTAAAGTCGAC 59.553 45.833 7.70 7.70 0.00 4.20
482 483 4.624015 CCAACTACCAACACTAAAGTCGA 58.376 43.478 0.00 0.00 0.00 4.20
483 484 3.185797 GCCAACTACCAACACTAAAGTCG 59.814 47.826 0.00 0.00 0.00 4.18
484 485 4.386711 AGCCAACTACCAACACTAAAGTC 58.613 43.478 0.00 0.00 0.00 3.01
485 486 4.432980 AGCCAACTACCAACACTAAAGT 57.567 40.909 0.00 0.00 0.00 2.66
486 487 4.023193 CCAAGCCAACTACCAACACTAAAG 60.023 45.833 0.00 0.00 0.00 1.85
487 488 3.886505 CCAAGCCAACTACCAACACTAAA 59.113 43.478 0.00 0.00 0.00 1.85
488 489 3.482436 CCAAGCCAACTACCAACACTAA 58.518 45.455 0.00 0.00 0.00 2.24
489 490 2.812613 GCCAAGCCAACTACCAACACTA 60.813 50.000 0.00 0.00 0.00 2.74
490 491 1.981256 CCAAGCCAACTACCAACACT 58.019 50.000 0.00 0.00 0.00 3.55
491 492 0.313987 GCCAAGCCAACTACCAACAC 59.686 55.000 0.00 0.00 0.00 3.32
492 493 1.169661 CGCCAAGCCAACTACCAACA 61.170 55.000 0.00 0.00 0.00 3.33
493 494 1.170290 ACGCCAAGCCAACTACCAAC 61.170 55.000 0.00 0.00 0.00 3.77
494 495 0.887387 GACGCCAAGCCAACTACCAA 60.887 55.000 0.00 0.00 0.00 3.67
495 496 1.302192 GACGCCAAGCCAACTACCA 60.302 57.895 0.00 0.00 0.00 3.25
496 497 0.676782 ATGACGCCAAGCCAACTACC 60.677 55.000 0.00 0.00 0.00 3.18
497 498 1.135689 CAATGACGCCAAGCCAACTAC 60.136 52.381 0.00 0.00 0.00 2.73
498 499 1.164411 CAATGACGCCAAGCCAACTA 58.836 50.000 0.00 0.00 0.00 2.24
499 500 1.526575 CCAATGACGCCAAGCCAACT 61.527 55.000 0.00 0.00 0.00 3.16
500 501 1.080569 CCAATGACGCCAAGCCAAC 60.081 57.895 0.00 0.00 0.00 3.77
501 502 2.274645 CCCAATGACGCCAAGCCAA 61.275 57.895 0.00 0.00 0.00 4.52
502 503 2.676121 CCCAATGACGCCAAGCCA 60.676 61.111 0.00 0.00 0.00 4.75
503 504 3.451894 CCCCAATGACGCCAAGCC 61.452 66.667 0.00 0.00 0.00 4.35
504 505 1.322538 AATCCCCAATGACGCCAAGC 61.323 55.000 0.00 0.00 0.00 4.01
505 506 1.135024 CAAATCCCCAATGACGCCAAG 60.135 52.381 0.00 0.00 0.00 3.61
506 507 0.894141 CAAATCCCCAATGACGCCAA 59.106 50.000 0.00 0.00 0.00 4.52
507 508 0.969917 CCAAATCCCCAATGACGCCA 60.970 55.000 0.00 0.00 0.00 5.69
508 509 0.682855 TCCAAATCCCCAATGACGCC 60.683 55.000 0.00 0.00 0.00 5.68
509 510 0.740737 CTCCAAATCCCCAATGACGC 59.259 55.000 0.00 0.00 0.00 5.19
510 511 2.128771 ACTCCAAATCCCCAATGACG 57.871 50.000 0.00 0.00 0.00 4.35
511 512 4.600062 AGTAACTCCAAATCCCCAATGAC 58.400 43.478 0.00 0.00 0.00 3.06
512 513 4.946160 AGTAACTCCAAATCCCCAATGA 57.054 40.909 0.00 0.00 0.00 2.57
513 514 4.381932 GCAAGTAACTCCAAATCCCCAATG 60.382 45.833 0.00 0.00 0.00 2.82
514 515 3.769300 GCAAGTAACTCCAAATCCCCAAT 59.231 43.478 0.00 0.00 0.00 3.16
515 516 3.161866 GCAAGTAACTCCAAATCCCCAA 58.838 45.455 0.00 0.00 0.00 4.12
516 517 2.556559 GGCAAGTAACTCCAAATCCCCA 60.557 50.000 0.00 0.00 0.00 4.96
517 518 2.100197 GGCAAGTAACTCCAAATCCCC 58.900 52.381 0.00 0.00 0.00 4.81
518 519 2.802719 TGGCAAGTAACTCCAAATCCC 58.197 47.619 0.00 0.00 0.00 3.85
519 520 3.826729 AGTTGGCAAGTAACTCCAAATCC 59.173 43.478 5.60 0.00 41.05 3.01
520 521 5.048153 GAGTTGGCAAGTAACTCCAAATC 57.952 43.478 7.71 4.22 45.14 2.17
527 528 3.508845 ATGGTGAGTTGGCAAGTAACT 57.491 42.857 19.60 5.91 40.84 2.24
528 529 3.857010 GCAATGGTGAGTTGGCAAGTAAC 60.857 47.826 13.35 13.35 0.00 2.50
529 530 2.295909 GCAATGGTGAGTTGGCAAGTAA 59.704 45.455 7.71 0.00 0.00 2.24
530 531 1.885887 GCAATGGTGAGTTGGCAAGTA 59.114 47.619 7.71 0.00 0.00 2.24
531 532 0.675633 GCAATGGTGAGTTGGCAAGT 59.324 50.000 7.41 7.41 0.00 3.16
532 533 3.502237 GCAATGGTGAGTTGGCAAG 57.498 52.632 0.00 0.00 0.00 4.01
536 537 1.331214 AACAGGCAATGGTGAGTTGG 58.669 50.000 0.00 0.00 0.00 3.77
543 544 3.448301 CCATTATCACAACAGGCAATGGT 59.552 43.478 0.00 0.00 38.28 3.55
544 545 3.700539 TCCATTATCACAACAGGCAATGG 59.299 43.478 5.04 5.04 42.38 3.16
545 546 4.987408 TCCATTATCACAACAGGCAATG 57.013 40.909 0.00 0.00 0.00 2.82
546 547 5.018809 ACTTCCATTATCACAACAGGCAAT 58.981 37.500 0.00 0.00 0.00 3.56
547 548 4.218200 CACTTCCATTATCACAACAGGCAA 59.782 41.667 0.00 0.00 0.00 4.52
548 549 3.758023 CACTTCCATTATCACAACAGGCA 59.242 43.478 0.00 0.00 0.00 4.75
549 550 4.009675 TCACTTCCATTATCACAACAGGC 58.990 43.478 0.00 0.00 0.00 4.85
550 551 4.396166 GGTCACTTCCATTATCACAACAGG 59.604 45.833 0.00 0.00 0.00 4.00
551 552 5.248640 AGGTCACTTCCATTATCACAACAG 58.751 41.667 0.00 0.00 0.00 3.16
552 553 5.241403 AGGTCACTTCCATTATCACAACA 57.759 39.130 0.00 0.00 0.00 3.33
553 554 6.575162 AAAGGTCACTTCCATTATCACAAC 57.425 37.500 0.00 0.00 35.41 3.32
554 555 7.004086 AGAAAAGGTCACTTCCATTATCACAA 58.996 34.615 0.00 0.00 35.41 3.33
555 556 6.542821 AGAAAAGGTCACTTCCATTATCACA 58.457 36.000 0.00 0.00 35.41 3.58
556 557 8.561738 TTAGAAAAGGTCACTTCCATTATCAC 57.438 34.615 0.00 0.00 35.41 3.06
557 558 9.753674 AATTAGAAAAGGTCACTTCCATTATCA 57.246 29.630 0.00 0.00 35.41 2.15
559 560 8.971073 CCAATTAGAAAAGGTCACTTCCATTAT 58.029 33.333 0.00 0.00 35.41 1.28
560 561 7.396055 CCCAATTAGAAAAGGTCACTTCCATTA 59.604 37.037 0.00 0.00 35.41 1.90
561 562 6.211384 CCCAATTAGAAAAGGTCACTTCCATT 59.789 38.462 0.00 0.00 35.41 3.16
562 563 5.716703 CCCAATTAGAAAAGGTCACTTCCAT 59.283 40.000 0.00 0.00 35.41 3.41
563 564 5.076873 CCCAATTAGAAAAGGTCACTTCCA 58.923 41.667 0.00 0.00 35.41 3.53
564 565 5.077564 ACCCAATTAGAAAAGGTCACTTCC 58.922 41.667 0.00 0.00 35.41 3.46
565 566 6.650427 AACCCAATTAGAAAAGGTCACTTC 57.350 37.500 0.00 0.00 35.41 3.01
566 567 8.721133 ATTAACCCAATTAGAAAAGGTCACTT 57.279 30.769 0.00 0.00 38.99 3.16
567 568 8.721133 AATTAACCCAATTAGAAAAGGTCACT 57.279 30.769 0.00 0.00 34.99 3.41
577 578 8.700973 GGCAAAAGGATAATTAACCCAATTAGA 58.299 33.333 8.09 0.00 41.32 2.10
578 579 7.931407 GGGCAAAAGGATAATTAACCCAATTAG 59.069 37.037 8.09 0.00 41.32 1.73
579 580 7.625682 AGGGCAAAAGGATAATTAACCCAATTA 59.374 33.333 8.09 0.00 42.03 1.40
652 653 3.733337 CACAGGCTAGAGACAAAACTGT 58.267 45.455 0.00 0.00 38.13 3.55
661 662 2.573869 GTGCGCACAGGCTAGAGA 59.426 61.111 34.52 0.00 38.10 3.10
663 664 4.435436 CGGTGCGCACAGGCTAGA 62.435 66.667 38.60 0.00 38.10 2.43
670 671 4.578898 AACGAGTCGGTGCGCACA 62.579 61.111 38.60 19.65 0.00 4.57
893 909 1.653094 CGCCGTGCTCTCTCTCTCTT 61.653 60.000 0.00 0.00 0.00 2.85
993 1014 2.617532 GCTTGAGGAAGACATGGAGCTT 60.618 50.000 0.00 0.00 0.00 3.74
1117 1138 0.806492 GGACGATTCTGGTTCCTCGC 60.806 60.000 0.00 0.00 34.60 5.03
1255 1276 0.960364 GCCAGAGCATCGACCCAAAA 60.960 55.000 0.00 0.00 42.67 2.44
1934 1958 9.845740 AAATTTCTAACCTTAATTGTTTGGCTT 57.154 25.926 0.00 0.00 0.00 4.35
2043 2067 1.405121 CCTGGCGTAAACCTCTACCAC 60.405 57.143 0.00 0.00 0.00 4.16
2129 2158 1.215382 GTGCATTTTCCGCCCTTCC 59.785 57.895 0.00 0.00 0.00 3.46
2203 2233 1.819632 GGTTACCAGCGCATCCCTG 60.820 63.158 11.47 0.00 0.00 4.45
2235 2265 6.001449 TCCCTATCCATGTAAAAGTCTTGG 57.999 41.667 0.00 0.00 0.00 3.61
2245 2275 4.295905 ACCTTCCTTCCCTATCCATGTA 57.704 45.455 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.