Multiple sequence alignment - TraesCS6A01G179800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G179800 chr6A 100.000 4981 0 0 1 4981 202357527 202352547 0.000000e+00 9199
1 TraesCS6A01G179800 chr6B 92.243 4409 214 51 628 4981 257565360 257569695 0.000000e+00 6130
2 TraesCS6A01G179800 chr6B 83.938 386 44 11 4530 4910 213013643 213013271 2.210000e-93 353
3 TraesCS6A01G179800 chr6B 89.516 248 18 6 91 330 257565097 257565344 1.740000e-79 307
4 TraesCS6A01G179800 chr6B 92.593 81 5 1 4900 4979 695132905 695132825 1.130000e-21 115
5 TraesCS6A01G179800 chr6D 93.925 3078 111 33 1402 4439 144468936 144471977 0.000000e+00 4578
6 TraesCS6A01G179800 chr6D 92.255 736 28 10 628 1352 144468202 144468919 0.000000e+00 1016
7 TraesCS6A01G179800 chr6D 92.293 519 30 8 4453 4970 144472033 144472542 0.000000e+00 728
8 TraesCS6A01G179800 chr6D 83.979 387 48 11 4530 4913 119943537 119943912 4.740000e-95 359
9 TraesCS6A01G179800 chr6D 89.437 284 16 9 92 361 144467912 144468195 3.690000e-91 346
10 TraesCS6A01G179800 chr6D 82.188 393 50 14 4538 4926 345063269 345062893 2.240000e-83 320
11 TraesCS6A01G179800 chr6D 81.500 400 59 12 4530 4927 77739089 77738703 1.040000e-81 315
12 TraesCS6A01G179800 chr2A 93.455 275 17 1 356 629 216081760 216082034 1.670000e-109 407
13 TraesCS6A01G179800 chr7A 92.000 275 18 2 356 629 231101050 231101321 2.810000e-102 383
14 TraesCS6A01G179800 chr3A 90.614 277 25 1 356 631 79191521 79191797 2.830000e-97 366
15 TraesCS6A01G179800 chr1B 90.323 279 26 1 354 631 558919614 558919892 1.020000e-96 364
16 TraesCS6A01G179800 chr1B 90.476 84 6 1 4900 4981 28167725 28167808 5.270000e-20 110
17 TraesCS6A01G179800 chr5B 89.324 281 29 1 353 632 616159947 616159667 7.930000e-93 351
18 TraesCS6A01G179800 chr2B 90.299 268 26 0 356 623 111417810 111418077 7.930000e-93 351
19 TraesCS6A01G179800 chr2B 88.514 148 16 1 4289 4436 754993164 754993310 1.420000e-40 178
20 TraesCS6A01G179800 chr2B 87.417 151 19 0 4289 4439 4050907 4050757 1.840000e-39 174
21 TraesCS6A01G179800 chr2B 87.417 151 19 0 4289 4439 4461646 4461496 1.840000e-39 174
22 TraesCS6A01G179800 chr2B 87.248 149 19 0 4289 4437 4314446 4314298 2.380000e-38 171
23 TraesCS6A01G179800 chr2B 95.122 82 4 0 4900 4981 801180484 801180565 4.050000e-26 130
24 TraesCS6A01G179800 chr7B 89.324 281 27 3 354 632 246483886 246484165 2.850000e-92 350
25 TraesCS6A01G179800 chr7B 88.929 280 30 1 353 631 689667840 689668119 1.330000e-90 344
26 TraesCS6A01G179800 chr7B 76.797 487 68 28 4530 4981 88871061 88871537 1.080000e-56 231
27 TraesCS6A01G179800 chr4B 89.493 276 26 3 356 629 182602347 182602073 3.690000e-91 346
28 TraesCS6A01G179800 chr5D 82.995 394 46 15 4538 4926 552449584 552449207 2.220000e-88 337
29 TraesCS6A01G179800 chr5D 82.995 394 44 16 4538 4926 46993406 46993031 7.990000e-88 335
30 TraesCS6A01G179800 chr7D 83.202 381 44 15 4538 4913 535675995 535676360 1.030000e-86 331
31 TraesCS6A01G179800 chr7D 93.976 83 4 1 4900 4981 591788834 591788916 1.880000e-24 124
32 TraesCS6A01G179800 chr4D 82.188 393 49 15 4539 4926 467612277 467611901 8.050000e-83 318
33 TraesCS6A01G179800 chr2D 86.755 151 18 2 4290 4439 648171057 648170908 3.080000e-37 167
34 TraesCS6A01G179800 chr2D 85.443 158 20 3 4284 4439 52993362 52993206 1.430000e-35 161
35 TraesCS6A01G179800 chr2D 92.857 84 4 1 4900 4981 522147870 522147953 2.440000e-23 121
36 TraesCS6A01G179800 chr3D 86.275 153 17 3 4289 4439 591661081 591660931 3.990000e-36 163
37 TraesCS6A01G179800 chr3D 91.463 82 5 1 4900 4979 18622021 18621940 1.470000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G179800 chr6A 202352547 202357527 4980 True 9199.0 9199 100.0000 1 4981 1 chr6A.!!$R1 4980
1 TraesCS6A01G179800 chr6B 257565097 257569695 4598 False 3218.5 6130 90.8795 91 4981 2 chr6B.!!$F1 4890
2 TraesCS6A01G179800 chr6D 144467912 144472542 4630 False 1667.0 4578 91.9775 92 4970 4 chr6D.!!$F2 4878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.033109 GGGATCTTTGGACCCCCTTG 60.033 60.0 0.00 0.00 37.85 3.61 F
1015 1040 0.108138 GACAATGCCGGCTCTACTGT 60.108 55.0 29.70 21.43 0.00 3.55 F
1282 1319 0.036732 TGAGTGTTCCTGGTGCATCC 59.963 55.0 0.00 0.00 0.00 3.51 F
1635 1683 0.242286 CCGATGAGTGCTCCCTATCG 59.758 60.0 11.19 11.19 40.03 2.92 F
1639 1687 0.259065 TGAGTGCTCCCTATCGACCT 59.741 55.0 0.00 0.00 0.00 3.85 F
3378 3485 0.251742 TGTGGGGCCCTGAAATTGAG 60.252 55.0 25.93 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1176 1.019805 GCCCGAGTACTGACCAAAGC 61.020 60.000 0.00 0.00 0.00 3.51 R
2147 2223 0.249657 CCGGCATAACTCTCTCCAGC 60.250 60.000 0.00 0.00 0.00 4.85 R
2492 2568 2.295885 GAGTCTGAAATGAGGCCATGG 58.704 52.381 7.63 7.63 32.36 3.66 R
3307 3414 2.143876 AAGGCAGTGAAACACAAGGT 57.856 45.000 0.00 0.00 41.43 3.50 R
3468 3575 6.238076 GCAAAGTACAATGTTCCAAAACCTTG 60.238 38.462 0.00 5.22 42.96 3.61 R
4598 4750 3.186909 CATCCGCGAACTCATGTAGAAA 58.813 45.455 8.23 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.188671 GGGATCTTTGGACCCCCT 57.811 61.111 0.00 0.00 37.85 4.79
18 19 2.410039 GGGATCTTTGGACCCCCTT 58.590 57.895 0.00 0.00 37.85 3.95
19 20 0.033109 GGGATCTTTGGACCCCCTTG 60.033 60.000 0.00 0.00 37.85 3.61
20 21 0.704664 GGATCTTTGGACCCCCTTGT 59.295 55.000 0.00 0.00 0.00 3.16
21 22 1.920351 GGATCTTTGGACCCCCTTGTA 59.080 52.381 0.00 0.00 0.00 2.41
22 23 2.310647 GGATCTTTGGACCCCCTTGTAA 59.689 50.000 0.00 0.00 0.00 2.41
23 24 3.245479 GGATCTTTGGACCCCCTTGTAAA 60.245 47.826 0.00 0.00 0.00 2.01
24 25 4.572007 GGATCTTTGGACCCCCTTGTAAAT 60.572 45.833 0.00 0.00 0.00 1.40
25 26 4.479156 TCTTTGGACCCCCTTGTAAATT 57.521 40.909 0.00 0.00 0.00 1.82
26 27 5.602291 TCTTTGGACCCCCTTGTAAATTA 57.398 39.130 0.00 0.00 0.00 1.40
27 28 5.326900 TCTTTGGACCCCCTTGTAAATTAC 58.673 41.667 0.00 0.00 0.00 1.89
28 29 5.075344 TCTTTGGACCCCCTTGTAAATTACT 59.925 40.000 4.67 0.00 0.00 2.24
29 30 5.342361 TTGGACCCCCTTGTAAATTACTT 57.658 39.130 4.67 0.00 0.00 2.24
30 31 5.342361 TGGACCCCCTTGTAAATTACTTT 57.658 39.130 4.67 0.00 0.00 2.66
31 32 5.718039 TGGACCCCCTTGTAAATTACTTTT 58.282 37.500 4.67 0.00 0.00 2.27
32 33 6.144625 TGGACCCCCTTGTAAATTACTTTTT 58.855 36.000 4.67 0.00 0.00 1.94
82 83 8.983307 AACAATTGTTCTACGGTTTTTGTTAA 57.017 26.923 18.13 0.00 35.10 2.01
83 84 8.983307 ACAATTGTTCTACGGTTTTTGTTAAA 57.017 26.923 4.92 0.00 0.00 1.52
84 85 9.420551 ACAATTGTTCTACGGTTTTTGTTAAAA 57.579 25.926 4.92 0.00 0.00 1.52
134 141 9.535878 ACCGTAAGCATTTTTAATGAAAAAGAA 57.464 25.926 6.84 0.00 45.33 2.52
206 225 2.245532 GTCGTGTCAGCGTGTTGC 59.754 61.111 0.00 0.00 46.98 4.17
286 306 0.798776 AGCAGATTTCTTTGCGTCGG 59.201 50.000 0.00 0.00 44.80 4.79
314 334 3.119316 CGCTAACAGTGGAGACAAGATCT 60.119 47.826 0.00 0.00 46.06 2.75
333 353 6.220201 AGATCTTAAGGAGCTTATCTTTCGC 58.780 40.000 1.85 0.00 37.40 4.70
356 377 6.310197 GCACAAAGTAGTCTGAAATGCTAAG 58.690 40.000 0.00 0.00 0.00 2.18
361 382 6.155475 AGTAGTCTGAAATGCTAAGGCTAG 57.845 41.667 0.00 0.00 39.59 3.42
363 384 5.017294 AGTCTGAAATGCTAAGGCTAGTC 57.983 43.478 0.00 0.00 39.59 2.59
364 385 4.467795 AGTCTGAAATGCTAAGGCTAGTCA 59.532 41.667 0.00 0.00 39.59 3.41
367 388 6.644592 GTCTGAAATGCTAAGGCTAGTCATAG 59.355 42.308 2.20 2.20 39.59 2.23
368 389 6.325028 TCTGAAATGCTAAGGCTAGTCATAGT 59.675 38.462 8.30 0.00 39.59 2.12
369 390 6.283694 TGAAATGCTAAGGCTAGTCATAGTG 58.716 40.000 8.30 0.00 39.59 2.74
370 391 4.881019 ATGCTAAGGCTAGTCATAGTGG 57.119 45.455 8.30 0.00 39.59 4.00
371 392 2.965831 TGCTAAGGCTAGTCATAGTGGG 59.034 50.000 8.30 0.00 39.59 4.61
372 393 3.231818 GCTAAGGCTAGTCATAGTGGGA 58.768 50.000 8.30 0.00 35.22 4.37
373 394 3.257127 GCTAAGGCTAGTCATAGTGGGAG 59.743 52.174 8.30 0.00 35.22 4.30
374 395 3.406512 AAGGCTAGTCATAGTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
375 396 4.537945 AAGGCTAGTCATAGTGGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
376 397 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
377 398 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
378 399 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
379 400 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
380 401 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
381 402 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
382 403 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
383 404 5.269991 AGTCATAGTGGGAGTAACTTAGCA 58.730 41.667 0.00 0.00 0.00 3.49
384 405 5.720041 AGTCATAGTGGGAGTAACTTAGCAA 59.280 40.000 0.00 0.00 0.00 3.91
385 406 6.043411 GTCATAGTGGGAGTAACTTAGCAAG 58.957 44.000 0.00 0.00 0.00 4.01
386 407 5.720041 TCATAGTGGGAGTAACTTAGCAAGT 59.280 40.000 0.00 0.00 45.46 3.16
387 408 6.893554 TCATAGTGGGAGTAACTTAGCAAGTA 59.106 38.462 2.60 0.00 41.91 2.24
388 409 7.398047 TCATAGTGGGAGTAACTTAGCAAGTAA 59.602 37.037 2.60 0.00 41.91 2.24
389 410 5.791666 AGTGGGAGTAACTTAGCAAGTAAC 58.208 41.667 2.60 0.00 41.91 2.50
390 411 5.306160 AGTGGGAGTAACTTAGCAAGTAACA 59.694 40.000 2.60 0.00 41.91 2.41
391 412 6.013639 AGTGGGAGTAACTTAGCAAGTAACAT 60.014 38.462 2.60 0.00 41.91 2.71
392 413 7.179694 AGTGGGAGTAACTTAGCAAGTAACATA 59.820 37.037 2.60 0.00 41.91 2.29
393 414 7.820872 GTGGGAGTAACTTAGCAAGTAACATAA 59.179 37.037 2.60 0.00 41.91 1.90
394 415 7.820872 TGGGAGTAACTTAGCAAGTAACATAAC 59.179 37.037 2.60 0.00 41.91 1.89
395 416 7.820872 GGGAGTAACTTAGCAAGTAACATAACA 59.179 37.037 2.60 0.00 41.91 2.41
396 417 8.654215 GGAGTAACTTAGCAAGTAACATAACAC 58.346 37.037 2.60 0.00 41.91 3.32
397 418 9.199982 GAGTAACTTAGCAAGTAACATAACACA 57.800 33.333 2.60 0.00 41.91 3.72
398 419 9.720769 AGTAACTTAGCAAGTAACATAACACAT 57.279 29.630 2.60 0.00 41.91 3.21
413 434 9.980780 AACATAACACATTTAAAACAAGTTTGC 57.019 25.926 0.00 0.00 32.36 3.68
414 435 9.377312 ACATAACACATTTAAAACAAGTTTGCT 57.623 25.926 0.00 0.00 32.36 3.91
419 440 9.377312 ACACATTTAAAACAAGTTTGCTTATGT 57.623 25.926 0.00 5.01 32.87 2.29
420 441 9.635632 CACATTTAAAACAAGTTTGCTTATGTG 57.364 29.630 18.21 18.21 35.38 3.21
421 442 8.825745 ACATTTAAAACAAGTTTGCTTATGTGG 58.174 29.630 0.00 0.00 32.87 4.17
422 443 6.836577 TTAAAACAAGTTTGCTTATGTGGC 57.163 33.333 0.00 0.00 32.87 5.01
423 444 4.399004 AAACAAGTTTGCTTATGTGGCA 57.601 36.364 0.00 0.00 37.97 4.92
424 445 4.605640 AACAAGTTTGCTTATGTGGCAT 57.394 36.364 0.00 0.00 39.54 4.40
425 446 5.720371 AACAAGTTTGCTTATGTGGCATA 57.280 34.783 0.00 0.00 39.54 3.14
426 447 5.314923 ACAAGTTTGCTTATGTGGCATAG 57.685 39.130 0.00 0.00 39.54 2.23
427 448 5.009631 ACAAGTTTGCTTATGTGGCATAGA 58.990 37.500 0.00 0.00 39.54 1.98
428 449 5.124457 ACAAGTTTGCTTATGTGGCATAGAG 59.876 40.000 0.00 0.00 39.54 2.43
429 450 4.848357 AGTTTGCTTATGTGGCATAGAGT 58.152 39.130 0.00 0.00 39.54 3.24
430 451 5.256474 AGTTTGCTTATGTGGCATAGAGTT 58.744 37.500 0.00 0.00 39.54 3.01
431 452 6.414732 AGTTTGCTTATGTGGCATAGAGTTA 58.585 36.000 0.00 0.00 39.54 2.24
432 453 6.884295 AGTTTGCTTATGTGGCATAGAGTTAA 59.116 34.615 0.00 0.00 39.54 2.01
433 454 7.557719 AGTTTGCTTATGTGGCATAGAGTTAAT 59.442 33.333 0.00 0.00 39.54 1.40
434 455 8.836413 GTTTGCTTATGTGGCATAGAGTTAATA 58.164 33.333 0.00 0.00 39.54 0.98
435 456 8.972458 TTGCTTATGTGGCATAGAGTTAATAA 57.028 30.769 0.00 0.00 39.54 1.40
436 457 8.972458 TGCTTATGTGGCATAGAGTTAATAAA 57.028 30.769 0.00 0.00 34.56 1.40
437 458 9.056005 TGCTTATGTGGCATAGAGTTAATAAAG 57.944 33.333 0.00 0.00 34.56 1.85
438 459 9.273016 GCTTATGTGGCATAGAGTTAATAAAGA 57.727 33.333 0.00 0.00 0.00 2.52
444 465 9.788960 GTGGCATAGAGTTAATAAAGAAAAAGG 57.211 33.333 0.00 0.00 0.00 3.11
445 466 9.528489 TGGCATAGAGTTAATAAAGAAAAAGGT 57.472 29.630 0.00 0.00 0.00 3.50
485 506 4.914312 TGTTACTGTAACATAGCGCAAC 57.086 40.909 25.14 0.46 43.23 4.17
486 507 4.562082 TGTTACTGTAACATAGCGCAACT 58.438 39.130 25.14 0.00 43.23 3.16
487 508 4.624024 TGTTACTGTAACATAGCGCAACTC 59.376 41.667 25.14 0.13 43.23 3.01
488 509 3.313012 ACTGTAACATAGCGCAACTCA 57.687 42.857 11.47 0.00 0.00 3.41
489 510 3.659786 ACTGTAACATAGCGCAACTCAA 58.340 40.909 11.47 0.00 0.00 3.02
490 511 4.062293 ACTGTAACATAGCGCAACTCAAA 58.938 39.130 11.47 0.00 0.00 2.69
491 512 4.152402 ACTGTAACATAGCGCAACTCAAAG 59.848 41.667 11.47 0.16 0.00 2.77
492 513 2.619013 AACATAGCGCAACTCAAAGC 57.381 45.000 11.47 0.00 0.00 3.51
493 514 1.522668 ACATAGCGCAACTCAAAGCA 58.477 45.000 11.47 0.00 0.00 3.91
494 515 1.879380 ACATAGCGCAACTCAAAGCAA 59.121 42.857 11.47 0.00 0.00 3.91
495 516 2.293122 ACATAGCGCAACTCAAAGCAAA 59.707 40.909 11.47 0.00 0.00 3.68
496 517 3.243367 ACATAGCGCAACTCAAAGCAAAA 60.243 39.130 11.47 0.00 0.00 2.44
497 518 2.514205 AGCGCAACTCAAAGCAAAAT 57.486 40.000 11.47 0.00 0.00 1.82
498 519 3.641437 AGCGCAACTCAAAGCAAAATA 57.359 38.095 11.47 0.00 0.00 1.40
499 520 3.976169 AGCGCAACTCAAAGCAAAATAA 58.024 36.364 11.47 0.00 0.00 1.40
500 521 4.367450 AGCGCAACTCAAAGCAAAATAAA 58.633 34.783 11.47 0.00 0.00 1.40
501 522 4.990426 AGCGCAACTCAAAGCAAAATAAAT 59.010 33.333 11.47 0.00 0.00 1.40
502 523 5.119125 AGCGCAACTCAAAGCAAAATAAATC 59.881 36.000 11.47 0.00 0.00 2.17
503 524 5.119125 GCGCAACTCAAAGCAAAATAAATCT 59.881 36.000 0.30 0.00 0.00 2.40
504 525 6.307800 GCGCAACTCAAAGCAAAATAAATCTA 59.692 34.615 0.30 0.00 0.00 1.98
505 526 7.009540 GCGCAACTCAAAGCAAAATAAATCTAT 59.990 33.333 0.30 0.00 0.00 1.98
506 527 9.502145 CGCAACTCAAAGCAAAATAAATCTATA 57.498 29.630 0.00 0.00 0.00 1.31
577 598 9.471702 TGCACTATAAAGGTAGTAACTTAGACT 57.528 33.333 0.00 0.00 33.29 3.24
584 605 8.930846 AAAGGTAGTAACTTAGACTAGTGTCA 57.069 34.615 0.00 0.00 45.20 3.58
585 606 9.531158 AAAGGTAGTAACTTAGACTAGTGTCAT 57.469 33.333 0.00 0.00 45.20 3.06
586 607 8.508883 AGGTAGTAACTTAGACTAGTGTCATG 57.491 38.462 0.00 0.00 45.20 3.07
587 608 7.067251 AGGTAGTAACTTAGACTAGTGTCATGC 59.933 40.741 0.00 0.00 45.20 4.06
588 609 6.835819 AGTAACTTAGACTAGTGTCATGCA 57.164 37.500 0.00 0.00 45.20 3.96
589 610 7.411486 AGTAACTTAGACTAGTGTCATGCAT 57.589 36.000 0.00 0.00 45.20 3.96
590 611 8.521170 AGTAACTTAGACTAGTGTCATGCATA 57.479 34.615 0.00 0.00 45.20 3.14
591 612 9.137459 AGTAACTTAGACTAGTGTCATGCATAT 57.863 33.333 0.00 0.00 45.20 1.78
592 613 9.186323 GTAACTTAGACTAGTGTCATGCATATG 57.814 37.037 0.00 0.00 45.20 1.78
593 614 7.588497 ACTTAGACTAGTGTCATGCATATGA 57.412 36.000 6.97 0.00 45.20 2.15
606 627 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
607 628 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
608 629 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
609 630 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
610 631 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
611 632 8.622157 TGCATATGACACTAGTCTAAGTTACTC 58.378 37.037 6.97 0.00 45.20 2.59
612 633 8.077386 GCATATGACACTAGTCTAAGTTACTCC 58.923 40.741 6.97 0.00 45.20 3.85
613 634 8.569641 CATATGACACTAGTCTAAGTTACTCCC 58.430 40.741 0.00 0.00 45.20 4.30
614 635 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
615 636 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
616 637 5.840081 ACACTAGTCTAAGTTACTCCCCAT 58.160 41.667 0.00 0.00 0.00 4.00
617 638 5.892686 ACACTAGTCTAAGTTACTCCCCATC 59.107 44.000 0.00 0.00 0.00 3.51
618 639 5.892119 CACTAGTCTAAGTTACTCCCCATCA 59.108 44.000 0.00 0.00 0.00 3.07
619 640 6.551601 CACTAGTCTAAGTTACTCCCCATCAT 59.448 42.308 0.00 0.00 0.00 2.45
620 641 5.878406 AGTCTAAGTTACTCCCCATCATG 57.122 43.478 0.00 0.00 0.00 3.07
621 642 5.529289 AGTCTAAGTTACTCCCCATCATGA 58.471 41.667 0.00 0.00 0.00 3.07
622 643 5.364157 AGTCTAAGTTACTCCCCATCATGAC 59.636 44.000 0.00 0.00 0.00 3.06
623 644 5.364157 GTCTAAGTTACTCCCCATCATGACT 59.636 44.000 0.00 0.00 0.00 3.41
624 645 6.550108 GTCTAAGTTACTCCCCATCATGACTA 59.450 42.308 0.00 0.00 0.00 2.59
625 646 5.878406 AAGTTACTCCCCATCATGACTAG 57.122 43.478 0.00 0.00 0.00 2.57
626 647 3.643792 AGTTACTCCCCATCATGACTAGC 59.356 47.826 0.00 0.00 0.00 3.42
881 906 3.627577 GCAAAAAGACCAGACTTGACTCA 59.372 43.478 0.00 0.00 0.00 3.41
882 907 4.096382 GCAAAAAGACCAGACTTGACTCAA 59.904 41.667 0.00 0.00 0.00 3.02
892 917 1.771255 ACTTGACTCAACTGCCTCCTT 59.229 47.619 0.00 0.00 0.00 3.36
896 921 1.620819 GACTCAACTGCCTCCTTCTCA 59.379 52.381 0.00 0.00 0.00 3.27
897 922 1.622811 ACTCAACTGCCTCCTTCTCAG 59.377 52.381 0.00 0.00 0.00 3.35
898 923 1.622811 CTCAACTGCCTCCTTCTCAGT 59.377 52.381 0.00 0.00 42.28 3.41
902 927 1.899142 ACTGCCTCCTTCTCAGTTCTC 59.101 52.381 0.00 0.00 37.78 2.87
903 928 1.898472 CTGCCTCCTTCTCAGTTCTCA 59.102 52.381 0.00 0.00 0.00 3.27
904 929 1.620819 TGCCTCCTTCTCAGTTCTCAC 59.379 52.381 0.00 0.00 0.00 3.51
905 930 1.899142 GCCTCCTTCTCAGTTCTCACT 59.101 52.381 0.00 0.00 0.00 3.41
906 931 2.094234 GCCTCCTTCTCAGTTCTCACTC 60.094 54.545 0.00 0.00 0.00 3.51
907 932 2.495669 CCTCCTTCTCAGTTCTCACTCC 59.504 54.545 0.00 0.00 0.00 3.85
908 933 2.495669 CTCCTTCTCAGTTCTCACTCCC 59.504 54.545 0.00 0.00 0.00 4.30
909 934 2.110899 TCCTTCTCAGTTCTCACTCCCT 59.889 50.000 0.00 0.00 0.00 4.20
910 935 2.495669 CCTTCTCAGTTCTCACTCCCTC 59.504 54.545 0.00 0.00 0.00 4.30
988 1013 1.902508 CAGCCAAACCCTCTCTCACTA 59.097 52.381 0.00 0.00 0.00 2.74
1012 1037 1.291132 GAAGACAATGCCGGCTCTAC 58.709 55.000 29.70 14.83 0.00 2.59
1015 1040 0.108138 GACAATGCCGGCTCTACTGT 60.108 55.000 29.70 21.43 0.00 3.55
1016 1041 0.391661 ACAATGCCGGCTCTACTGTG 60.392 55.000 29.70 16.02 0.00 3.66
1017 1042 1.450312 AATGCCGGCTCTACTGTGC 60.450 57.895 29.70 0.00 0.00 4.57
1079 1104 3.213206 TGCTTCACTTTGTCATCTGGT 57.787 42.857 0.00 0.00 0.00 4.00
1128 1165 3.185203 ACAAGGCTCCCTGGGCAA 61.185 61.111 8.22 0.00 32.13 4.52
1162 1199 0.038599 TGGTCAGTACTCGGGCTACA 59.961 55.000 0.00 0.00 0.00 2.74
1174 1211 1.327690 GGGCTACATCGAGGTGGACA 61.328 60.000 21.23 0.00 0.00 4.02
1282 1319 0.036732 TGAGTGTTCCTGGTGCATCC 59.963 55.000 0.00 0.00 0.00 3.51
1330 1371 4.016444 TCTTTGGCTTTCATGGTGTATCC 58.984 43.478 0.00 0.00 0.00 2.59
1344 1385 0.543749 GTATCCTGCTCCCTGCTTGT 59.456 55.000 0.00 0.00 43.37 3.16
1362 1403 7.384660 CCTGCTTGTTTGCAATCAAGTTAAATA 59.615 33.333 34.21 20.31 42.83 1.40
1363 1404 8.830201 TGCTTGTTTGCAATCAAGTTAAATAT 57.170 26.923 34.21 0.00 41.83 1.28
1370 1411 6.563422 TGCAATCAAGTTAAATATGTGCTCC 58.437 36.000 0.00 0.00 0.00 4.70
1371 1412 5.979517 GCAATCAAGTTAAATATGTGCTCCC 59.020 40.000 0.00 0.00 0.00 4.30
1372 1413 6.183360 GCAATCAAGTTAAATATGTGCTCCCT 60.183 38.462 0.00 0.00 0.00 4.20
1373 1414 6.949352 ATCAAGTTAAATATGTGCTCCCTG 57.051 37.500 0.00 0.00 0.00 4.45
1374 1415 4.640201 TCAAGTTAAATATGTGCTCCCTGC 59.360 41.667 0.00 0.00 43.25 4.85
1413 1454 7.830739 TCTCCTTTCATATTTTCTTCTTTGGC 58.169 34.615 0.00 0.00 0.00 4.52
1425 1466 2.370281 TCTTTGGCTAAGCTCTGTCG 57.630 50.000 3.69 0.00 33.66 4.35
1454 1495 0.895530 GTGATCCGAACTCTGGTCCA 59.104 55.000 0.00 0.00 0.00 4.02
1492 1540 6.073003 GGAGATATCATTGGTTCGATGGTTTC 60.073 42.308 5.32 0.00 0.00 2.78
1518 1566 1.263356 TAGGACCTGGGTGTTCTTCG 58.737 55.000 3.53 0.00 0.00 3.79
1618 1666 4.988598 AAGGTGCGTGTGAGGCCG 62.989 66.667 0.00 0.00 0.00 6.13
1628 1676 1.520342 GTGAGGCCGATGAGTGCTC 60.520 63.158 0.00 0.00 0.00 4.26
1635 1683 0.242286 CCGATGAGTGCTCCCTATCG 59.758 60.000 11.19 11.19 40.03 2.92
1639 1687 0.259065 TGAGTGCTCCCTATCGACCT 59.741 55.000 0.00 0.00 0.00 3.85
1651 1699 3.127030 CCTATCGACCTTTTTCTGCAACC 59.873 47.826 0.00 0.00 0.00 3.77
1735 1783 1.926510 GTTTTGGTGCTCTTGTGTTGC 59.073 47.619 0.00 0.00 0.00 4.17
1736 1784 0.459489 TTTGGTGCTCTTGTGTTGCC 59.541 50.000 0.00 0.00 0.00 4.52
1737 1785 1.391157 TTGGTGCTCTTGTGTTGCCC 61.391 55.000 0.00 0.00 0.00 5.36
1795 1843 1.066071 GGTGTTGGCTTCTCCTACTCC 60.066 57.143 2.09 2.09 43.32 3.85
1851 1899 1.134580 CATGACAGGTAGGAGTGCTGG 60.135 57.143 0.00 0.00 0.00 4.85
1866 1942 3.264450 AGTGCTGGCTACTGAGGTTTATT 59.736 43.478 0.00 0.00 0.00 1.40
1868 1944 4.571176 GTGCTGGCTACTGAGGTTTATTAC 59.429 45.833 0.00 0.00 0.00 1.89
1873 1949 7.195374 TGGCTACTGAGGTTTATTACTGAAT 57.805 36.000 0.00 0.00 0.00 2.57
1924 2000 9.982651 TGCTGTTTTCTTACTGGATATATAGAC 57.017 33.333 0.00 0.00 0.00 2.59
1944 2020 4.030134 ACGACTGCCTTTTCGTAGATAG 57.970 45.455 0.00 0.00 46.34 2.08
1992 2068 3.706600 ACCACTTTAATAGCGGTTGGA 57.293 42.857 6.26 0.00 35.77 3.53
1993 2069 3.340928 ACCACTTTAATAGCGGTTGGAC 58.659 45.455 6.26 0.00 35.77 4.02
2003 2079 3.915437 AGCGGTTGGACTTATGTTTTG 57.085 42.857 0.00 0.00 0.00 2.44
2006 2082 3.252458 GCGGTTGGACTTATGTTTTGTCT 59.748 43.478 0.00 0.00 0.00 3.41
2008 2084 4.320202 CGGTTGGACTTATGTTTTGTCTGG 60.320 45.833 0.00 0.00 0.00 3.86
2020 2096 5.437060 TGTTTTGTCTGGAAGTCTTAAGCT 58.563 37.500 0.00 0.00 33.76 3.74
2066 2142 6.088824 GCACTGACATTTCTTTACTGAATGG 58.911 40.000 0.00 0.00 0.00 3.16
2079 2155 6.713762 TTACTGAATGGATAAAGCAATGGG 57.286 37.500 0.00 0.00 0.00 4.00
2147 2223 4.063689 CAAGGGCAGAGAGCTATACATTG 58.936 47.826 0.00 0.00 44.79 2.82
2170 2246 2.308690 GGAGAGAGTTATGCCGGTACT 58.691 52.381 1.90 1.47 0.00 2.73
2228 2304 5.343307 AAAAAGTGAACAACTCTTGGCAT 57.657 34.783 0.00 0.00 38.56 4.40
2246 2322 7.498239 TCTTGGCATTCTCTAAATCTTCAGATG 59.502 37.037 0.00 0.00 34.49 2.90
2259 2335 7.692460 AATCTTCAGATGTTCTTTGCATGTA 57.308 32.000 0.00 0.00 34.49 2.29
2260 2336 7.692460 ATCTTCAGATGTTCTTTGCATGTAA 57.308 32.000 0.00 0.00 32.68 2.41
2289 2365 1.686355 ACATTCCACAACTTGCCGAA 58.314 45.000 0.00 0.00 0.00 4.30
2377 2453 5.523916 ACCTCAATCAGAATAAACCGATTCG 59.476 40.000 0.00 0.00 40.20 3.34
2393 2469 4.341935 CGATTCGCTGTTGATGCATTTTA 58.658 39.130 0.00 0.00 0.00 1.52
2474 2550 0.596577 CCACCGACTTCAACTCGAGA 59.403 55.000 21.68 0.00 32.65 4.04
2648 2724 0.457337 GCCGGTTCGTCGACAAGTAT 60.457 55.000 17.16 0.00 0.00 2.12
2723 2799 1.961394 TCCCCTCATGTATGCTCGTAC 59.039 52.381 0.00 0.00 0.00 3.67
2844 2920 0.316196 GTGTTGTGCAGAAGCGTGTC 60.316 55.000 0.00 0.00 46.23 3.67
2969 3045 1.986698 GCAGTTTGCAGCAGGTATTG 58.013 50.000 0.00 0.00 44.26 1.90
2980 3056 5.163269 TGCAGCAGGTATTGAATCTACAGAT 60.163 40.000 0.00 0.00 36.07 2.90
3051 3127 9.170734 ACAGATTAATAAGTATATGCATGCAGG 57.829 33.333 26.69 0.00 0.00 4.85
3052 3128 9.170734 CAGATTAATAAGTATATGCATGCAGGT 57.829 33.333 26.69 18.43 0.00 4.00
3057 3133 8.924511 AATAAGTATATGCATGCAGGTACTTT 57.075 30.769 37.94 28.97 39.05 2.66
3058 3134 6.624352 AAGTATATGCATGCAGGTACTTTG 57.376 37.500 33.19 0.00 37.05 2.77
3059 3135 5.684704 AGTATATGCATGCAGGTACTTTGT 58.315 37.500 28.49 13.76 34.60 2.83
3060 3136 4.906065 ATATGCATGCAGGTACTTTGTG 57.094 40.909 26.69 0.00 34.60 3.33
3061 3137 1.979855 TGCATGCAGGTACTTTGTGT 58.020 45.000 18.46 0.00 34.60 3.72
3062 3138 3.133141 TGCATGCAGGTACTTTGTGTA 57.867 42.857 18.46 0.00 34.60 2.90
3063 3139 3.684908 TGCATGCAGGTACTTTGTGTAT 58.315 40.909 18.46 0.00 34.60 2.29
3064 3140 4.837972 TGCATGCAGGTACTTTGTGTATA 58.162 39.130 18.46 0.00 34.60 1.47
3065 3141 5.436175 TGCATGCAGGTACTTTGTGTATAT 58.564 37.500 18.46 0.00 34.60 0.86
3066 3142 5.296531 TGCATGCAGGTACTTTGTGTATATG 59.703 40.000 18.46 0.00 34.60 1.78
3067 3143 5.751680 CATGCAGGTACTTTGTGTATATGC 58.248 41.667 0.00 0.00 41.63 3.14
3085 3190 8.190784 TGTATATGCATCTGTTATATCTGACCG 58.809 37.037 0.19 0.00 0.00 4.79
3160 3265 3.837213 ACTTGCAGATTCCAACAATCG 57.163 42.857 0.00 0.00 0.00 3.34
3242 3347 8.926092 AGGATAAATGATTAAAAGAGTAGCCC 57.074 34.615 0.00 0.00 0.00 5.19
3334 3441 2.819608 TGTTTCACTGCCTTTAGCCATC 59.180 45.455 0.00 0.00 42.71 3.51
3367 3474 0.679505 GGAACTTTCTTTGTGGGGCC 59.320 55.000 0.00 0.00 0.00 5.80
3370 3477 0.469892 ACTTTCTTTGTGGGGCCCTG 60.470 55.000 25.93 8.82 0.00 4.45
3372 3479 0.263172 TTTCTTTGTGGGGCCCTGAA 59.737 50.000 25.93 13.52 0.00 3.02
3373 3480 0.263172 TTCTTTGTGGGGCCCTGAAA 59.737 50.000 25.93 19.91 0.00 2.69
3374 3481 0.486879 TCTTTGTGGGGCCCTGAAAT 59.513 50.000 25.93 0.00 0.00 2.17
3375 3482 1.132881 TCTTTGTGGGGCCCTGAAATT 60.133 47.619 25.93 0.00 0.00 1.82
3378 3485 0.251742 TGTGGGGCCCTGAAATTGAG 60.252 55.000 25.93 0.00 0.00 3.02
3379 3486 0.972471 GTGGGGCCCTGAAATTGAGG 60.972 60.000 25.93 0.00 0.00 3.86
3391 3498 6.379133 CCCTGAAATTGAGGAATCAATGAAGA 59.621 38.462 0.00 0.00 39.92 2.87
3407 3514 8.344446 TCAATGAAGATGAAGAATCATGTGTT 57.656 30.769 0.00 0.00 46.30 3.32
3415 3522 8.188799 AGATGAAGAATCATGTGTTTAGCATTG 58.811 33.333 0.00 0.00 46.30 2.82
3468 3575 9.614792 AAAGTATATAGAATTGGGACTTGACAC 57.385 33.333 0.00 0.00 0.00 3.67
3603 3710 5.589855 TCAGGCCTAAATGATGTAACATGTG 59.410 40.000 3.98 0.00 0.00 3.21
3715 3822 0.747255 TAGGCCTCAAGACGAGCATC 59.253 55.000 9.68 0.00 40.78 3.91
3908 4015 0.745486 CACATGAGGCGCCATTCTCA 60.745 55.000 31.54 23.71 43.15 3.27
3952 4059 3.114606 TCATCAGGGCATTCCTACAAGA 58.885 45.455 0.00 0.00 46.12 3.02
3962 4069 2.327325 TCCTACAAGACAGGCCTCTT 57.673 50.000 0.00 0.64 32.82 2.85
4094 4201 4.727507 TCTTCATGTTCCTAGCTGTCTC 57.272 45.455 0.00 0.00 0.00 3.36
4108 4215 0.243907 TGTCTCAAGCTGCGGTAGTC 59.756 55.000 0.00 0.00 0.00 2.59
4174 4283 5.833131 AGGCTTGGTAATTGTTCAAAGAAGA 59.167 36.000 0.00 0.00 0.00 2.87
4276 4386 3.031013 CCTTTGTGGGAAGGTTTGAAGT 58.969 45.455 0.00 0.00 41.06 3.01
4303 4413 2.900122 ATCACGAGCGTGGATTTTTG 57.100 45.000 21.14 0.00 45.43 2.44
4312 4422 2.610232 GCGTGGATTTTTGAAGCATGGT 60.610 45.455 0.00 0.00 0.00 3.55
4448 4590 9.868277 GTTTGGTGATGAAATAATGGTGATTTA 57.132 29.630 0.00 0.00 0.00 1.40
4449 4591 9.868277 TTTGGTGATGAAATAATGGTGATTTAC 57.132 29.630 0.00 0.00 0.00 2.01
4451 4593 9.199645 TGGTGATGAAATAATGGTGATTTACAT 57.800 29.630 0.00 0.00 0.00 2.29
4529 4681 6.374417 ACCCACTACTTATCACACTTCAAT 57.626 37.500 0.00 0.00 0.00 2.57
4554 4706 9.975218 ATAAAGAGAACCACAATAACCAACTAT 57.025 29.630 0.00 0.00 0.00 2.12
4617 4769 3.306917 TTTTCTACATGAGTTCGCGGA 57.693 42.857 6.13 0.00 0.00 5.54
4664 4816 8.520351 CCGGTCCTTTTATCACTATTTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
4665 4817 9.556030 CGGTCCTTTTATCACTATTTCTTTTTC 57.444 33.333 0.00 0.00 0.00 2.29
4925 5086 9.691362 ATTGTTCGTTTAAATAGAAACATGCTT 57.309 25.926 9.63 0.00 38.92 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.704664 ACAAGGGGGTCCAAAGATCC 59.295 55.000 0.00 0.00 43.35 3.36
2 3 3.732048 TTACAAGGGGGTCCAAAGATC 57.268 47.619 0.00 0.00 34.83 2.75
3 4 4.692523 ATTTACAAGGGGGTCCAAAGAT 57.307 40.909 0.00 0.00 34.83 2.40
4 5 4.479156 AATTTACAAGGGGGTCCAAAGA 57.521 40.909 0.00 0.00 34.83 2.52
5 6 5.330233 AGTAATTTACAAGGGGGTCCAAAG 58.670 41.667 9.15 0.00 34.83 2.77
6 7 5.342361 AGTAATTTACAAGGGGGTCCAAA 57.658 39.130 9.15 0.00 34.83 3.28
7 8 5.342361 AAGTAATTTACAAGGGGGTCCAA 57.658 39.130 9.15 0.00 34.83 3.53
8 9 5.342361 AAAGTAATTTACAAGGGGGTCCA 57.658 39.130 9.15 0.00 34.83 4.02
9 10 6.675413 AAAAAGTAATTTACAAGGGGGTCC 57.325 37.500 9.15 0.00 0.00 4.46
57 58 8.983307 TTAACAAAAACCGTAGAACAATTGTT 57.017 26.923 23.49 23.49 41.20 2.83
58 59 8.983307 TTTAACAAAAACCGTAGAACAATTGT 57.017 26.923 4.92 4.92 0.00 2.71
85 86 8.521176 CGGTATATACTGCCTGATACTAAGTTT 58.479 37.037 12.54 0.00 0.00 2.66
86 87 7.668886 ACGGTATATACTGCCTGATACTAAGTT 59.331 37.037 19.67 0.00 36.01 2.66
87 88 7.173722 ACGGTATATACTGCCTGATACTAAGT 58.826 38.462 19.67 0.00 36.01 2.24
88 89 7.627298 ACGGTATATACTGCCTGATACTAAG 57.373 40.000 19.67 0.00 36.01 2.18
89 90 9.170734 CTTACGGTATATACTGCCTGATACTAA 57.829 37.037 19.67 8.64 36.01 2.24
97 98 5.740290 AATGCTTACGGTATATACTGCCT 57.260 39.130 19.67 5.93 36.01 4.75
98 99 6.796705 AAAATGCTTACGGTATATACTGCC 57.203 37.500 19.67 8.06 36.01 4.85
286 306 0.389948 CTCCACTGTTAGCGGGTGAC 60.390 60.000 4.56 0.00 33.32 3.67
314 334 4.827692 TGTGCGAAAGATAAGCTCCTTAA 58.172 39.130 0.00 0.00 29.35 1.85
332 352 4.756084 AGCATTTCAGACTACTTTGTGC 57.244 40.909 0.00 0.00 0.00 4.57
333 353 6.621596 GCCTTAGCATTTCAGACTACTTTGTG 60.622 42.308 0.00 0.00 39.53 3.33
356 377 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
361 382 5.593679 TGCTAAGTTACTCCCACTATGAC 57.406 43.478 0.00 0.00 0.00 3.06
363 384 5.978814 ACTTGCTAAGTTACTCCCACTATG 58.021 41.667 0.00 0.00 39.04 2.23
364 385 7.179694 TGTTACTTGCTAAGTTACTCCCACTAT 59.820 37.037 14.64 0.00 40.62 2.12
367 388 5.544650 TGTTACTTGCTAAGTTACTCCCAC 58.455 41.667 14.64 0.00 40.62 4.61
368 389 5.811796 TGTTACTTGCTAAGTTACTCCCA 57.188 39.130 14.64 0.00 40.62 4.37
369 390 7.820872 TGTTATGTTACTTGCTAAGTTACTCCC 59.179 37.037 14.64 5.83 40.62 4.30
370 391 8.654215 GTGTTATGTTACTTGCTAAGTTACTCC 58.346 37.037 14.64 5.61 40.62 3.85
371 392 9.199982 TGTGTTATGTTACTTGCTAAGTTACTC 57.800 33.333 14.64 7.39 40.62 2.59
372 393 9.720769 ATGTGTTATGTTACTTGCTAAGTTACT 57.279 29.630 14.64 0.00 40.62 2.24
387 408 9.980780 GCAAACTTGTTTTAAATGTGTTATGTT 57.019 25.926 0.00 0.00 0.00 2.71
388 409 9.377312 AGCAAACTTGTTTTAAATGTGTTATGT 57.623 25.926 0.00 0.00 0.00 2.29
393 414 9.377312 ACATAAGCAAACTTGTTTTAAATGTGT 57.623 25.926 5.59 0.00 36.57 3.72
394 415 9.635632 CACATAAGCAAACTTGTTTTAAATGTG 57.364 29.630 13.93 13.93 38.38 3.21
395 416 8.825745 CCACATAAGCAAACTTGTTTTAAATGT 58.174 29.630 0.00 0.00 36.57 2.71
396 417 7.798052 GCCACATAAGCAAACTTGTTTTAAATG 59.202 33.333 0.00 0.00 36.57 2.32
397 418 7.497249 TGCCACATAAGCAAACTTGTTTTAAAT 59.503 29.630 0.00 0.00 37.28 1.40
398 419 6.818644 TGCCACATAAGCAAACTTGTTTTAAA 59.181 30.769 0.00 0.00 37.28 1.52
399 420 6.341316 TGCCACATAAGCAAACTTGTTTTAA 58.659 32.000 0.00 0.00 37.28 1.52
400 421 5.907207 TGCCACATAAGCAAACTTGTTTTA 58.093 33.333 0.00 0.00 37.28 1.52
401 422 4.764172 TGCCACATAAGCAAACTTGTTTT 58.236 34.783 0.00 0.00 37.28 2.43
402 423 4.399004 TGCCACATAAGCAAACTTGTTT 57.601 36.364 0.00 0.00 37.28 2.83
403 424 4.605640 ATGCCACATAAGCAAACTTGTT 57.394 36.364 0.00 0.00 44.83 2.83
404 425 5.009631 TCTATGCCACATAAGCAAACTTGT 58.990 37.500 0.00 0.00 44.83 3.16
405 426 5.124457 ACTCTATGCCACATAAGCAAACTTG 59.876 40.000 0.00 0.00 44.83 3.16
406 427 5.256474 ACTCTATGCCACATAAGCAAACTT 58.744 37.500 0.00 0.00 44.83 2.66
407 428 4.848357 ACTCTATGCCACATAAGCAAACT 58.152 39.130 0.00 0.00 44.83 2.66
408 429 5.567138 AACTCTATGCCACATAAGCAAAC 57.433 39.130 0.00 0.00 44.83 2.93
409 430 7.880160 ATTAACTCTATGCCACATAAGCAAA 57.120 32.000 0.00 0.00 44.83 3.68
410 431 8.972458 TTATTAACTCTATGCCACATAAGCAA 57.028 30.769 0.00 0.00 44.83 3.91
411 432 8.972458 TTTATTAACTCTATGCCACATAAGCA 57.028 30.769 0.00 0.00 45.94 3.91
412 433 9.273016 TCTTTATTAACTCTATGCCACATAAGC 57.727 33.333 0.00 0.00 0.00 3.09
418 439 9.788960 CCTTTTTCTTTATTAACTCTATGCCAC 57.211 33.333 0.00 0.00 0.00 5.01
419 440 9.528489 ACCTTTTTCTTTATTAACTCTATGCCA 57.472 29.630 0.00 0.00 0.00 4.92
465 486 4.624024 TGAGTTGCGCTATGTTACAGTAAC 59.376 41.667 15.58 15.58 39.11 2.50
466 487 4.811908 TGAGTTGCGCTATGTTACAGTAA 58.188 39.130 9.73 0.00 0.00 2.24
467 488 4.443913 TGAGTTGCGCTATGTTACAGTA 57.556 40.909 9.73 0.00 0.00 2.74
468 489 3.313012 TGAGTTGCGCTATGTTACAGT 57.687 42.857 9.73 0.00 0.00 3.55
469 490 4.641954 CTTTGAGTTGCGCTATGTTACAG 58.358 43.478 9.73 0.00 0.00 2.74
470 491 3.120338 GCTTTGAGTTGCGCTATGTTACA 60.120 43.478 9.73 0.00 0.00 2.41
471 492 3.120338 TGCTTTGAGTTGCGCTATGTTAC 60.120 43.478 9.73 0.00 0.00 2.50
472 493 3.070748 TGCTTTGAGTTGCGCTATGTTA 58.929 40.909 9.73 0.00 0.00 2.41
473 494 1.879380 TGCTTTGAGTTGCGCTATGTT 59.121 42.857 9.73 0.00 0.00 2.71
474 495 1.522668 TGCTTTGAGTTGCGCTATGT 58.477 45.000 9.73 0.00 0.00 2.29
475 496 2.617250 TTGCTTTGAGTTGCGCTATG 57.383 45.000 9.73 0.00 0.00 2.23
476 497 3.641437 TTTTGCTTTGAGTTGCGCTAT 57.359 38.095 9.73 0.00 0.00 2.97
477 498 3.641437 ATTTTGCTTTGAGTTGCGCTA 57.359 38.095 9.73 0.00 0.00 4.26
478 499 2.514205 ATTTTGCTTTGAGTTGCGCT 57.486 40.000 9.73 0.00 0.00 5.92
479 500 4.707210 TTTATTTTGCTTTGAGTTGCGC 57.293 36.364 0.00 0.00 0.00 6.09
480 501 6.695292 AGATTTATTTTGCTTTGAGTTGCG 57.305 33.333 0.00 0.00 0.00 4.85
551 572 9.471702 AGTCTAAGTTACTACCTTTATAGTGCA 57.528 33.333 0.00 0.00 36.09 4.57
559 580 8.930846 TGACACTAGTCTAAGTTACTACCTTT 57.069 34.615 0.00 0.00 45.20 3.11
560 581 8.958506 CATGACACTAGTCTAAGTTACTACCTT 58.041 37.037 0.00 0.00 45.20 3.50
561 582 7.067251 GCATGACACTAGTCTAAGTTACTACCT 59.933 40.741 0.00 0.00 45.20 3.08
562 583 7.148120 TGCATGACACTAGTCTAAGTTACTACC 60.148 40.741 0.00 0.00 45.20 3.18
563 584 7.759465 TGCATGACACTAGTCTAAGTTACTAC 58.241 38.462 0.00 0.00 45.20 2.73
564 585 7.933215 TGCATGACACTAGTCTAAGTTACTA 57.067 36.000 0.00 0.00 45.20 1.82
565 586 6.835819 TGCATGACACTAGTCTAAGTTACT 57.164 37.500 0.00 0.00 45.20 2.24
566 587 9.186323 CATATGCATGACACTAGTCTAAGTTAC 57.814 37.037 10.16 0.00 45.20 2.50
567 588 9.131791 TCATATGCATGACACTAGTCTAAGTTA 57.868 33.333 10.16 0.00 45.20 2.24
568 589 8.011844 TCATATGCATGACACTAGTCTAAGTT 57.988 34.615 10.16 0.00 45.20 2.66
569 590 7.588497 TCATATGCATGACACTAGTCTAAGT 57.412 36.000 10.16 0.00 45.20 2.24
582 603 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
583 604 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
584 605 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
585 606 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
586 607 8.077386 GGAGTAACTTAGACTAGTGTCATATGC 58.923 40.741 0.00 0.00 45.20 3.14
587 608 8.569641 GGGAGTAACTTAGACTAGTGTCATATG 58.430 40.741 0.00 0.00 45.20 1.78
588 609 7.724951 GGGGAGTAACTTAGACTAGTGTCATAT 59.275 40.741 0.00 0.00 45.20 1.78
589 610 7.059156 GGGGAGTAACTTAGACTAGTGTCATA 58.941 42.308 0.00 0.00 45.20 2.15
590 611 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
591 612 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
592 613 5.259632 TGGGGAGTAACTTAGACTAGTGTC 58.740 45.833 0.00 0.00 43.22 3.67
593 614 5.266709 TGGGGAGTAACTTAGACTAGTGT 57.733 43.478 0.00 0.00 0.00 3.55
594 615 5.892119 TGATGGGGAGTAACTTAGACTAGTG 59.108 44.000 0.00 0.00 0.00 2.74
595 616 6.088541 TGATGGGGAGTAACTTAGACTAGT 57.911 41.667 0.00 0.00 0.00 2.57
596 617 6.778069 TCATGATGGGGAGTAACTTAGACTAG 59.222 42.308 0.00 0.00 0.00 2.57
597 618 6.550108 GTCATGATGGGGAGTAACTTAGACTA 59.450 42.308 0.00 0.00 0.00 2.59
598 619 5.364157 GTCATGATGGGGAGTAACTTAGACT 59.636 44.000 0.00 0.00 0.00 3.24
599 620 5.364157 AGTCATGATGGGGAGTAACTTAGAC 59.636 44.000 0.00 0.00 0.00 2.59
600 621 5.529289 AGTCATGATGGGGAGTAACTTAGA 58.471 41.667 0.00 0.00 0.00 2.10
601 622 5.878406 AGTCATGATGGGGAGTAACTTAG 57.122 43.478 0.00 0.00 0.00 2.18
602 623 5.304614 GCTAGTCATGATGGGGAGTAACTTA 59.695 44.000 0.00 0.00 0.00 2.24
603 624 4.101741 GCTAGTCATGATGGGGAGTAACTT 59.898 45.833 0.00 0.00 0.00 2.66
604 625 3.643792 GCTAGTCATGATGGGGAGTAACT 59.356 47.826 0.00 0.00 0.00 2.24
605 626 3.244249 GGCTAGTCATGATGGGGAGTAAC 60.244 52.174 0.00 0.00 0.00 2.50
606 627 2.972713 GGCTAGTCATGATGGGGAGTAA 59.027 50.000 0.00 0.00 0.00 2.24
607 628 2.180086 AGGCTAGTCATGATGGGGAGTA 59.820 50.000 0.00 0.00 0.00 2.59
608 629 1.061812 AGGCTAGTCATGATGGGGAGT 60.062 52.381 0.00 0.00 0.00 3.85
609 630 1.727062 AGGCTAGTCATGATGGGGAG 58.273 55.000 0.00 0.00 0.00 4.30
610 631 3.344535 TTAGGCTAGTCATGATGGGGA 57.655 47.619 0.00 0.00 0.00 4.81
611 632 3.871463 GCATTAGGCTAGTCATGATGGGG 60.871 52.174 8.52 0.00 40.25 4.96
612 633 3.341823 GCATTAGGCTAGTCATGATGGG 58.658 50.000 8.52 0.00 40.25 4.00
625 646 5.240891 TGCACTATGAGATTAGCATTAGGC 58.759 41.667 0.00 0.00 45.30 3.93
626 647 7.823310 AGATTGCACTATGAGATTAGCATTAGG 59.177 37.037 0.00 0.00 0.00 2.69
709 730 5.060693 GCTCGCGCTAGAATATAAAAGGTAC 59.939 44.000 13.89 0.00 0.00 3.34
711 732 3.988517 GCTCGCGCTAGAATATAAAAGGT 59.011 43.478 13.89 0.00 0.00 3.50
840 865 2.701587 CTCGAGAGGAGAGCGATGT 58.298 57.895 6.58 0.00 46.23 3.06
882 907 1.899142 GAGAACTGAGAAGGAGGCAGT 59.101 52.381 0.00 0.00 44.15 4.40
892 917 1.272760 GGGAGGGAGTGAGAACTGAGA 60.273 57.143 0.00 0.00 0.00 3.27
896 921 0.041982 GAGGGGAGGGAGTGAGAACT 59.958 60.000 0.00 0.00 0.00 3.01
897 922 0.978667 GGAGGGGAGGGAGTGAGAAC 60.979 65.000 0.00 0.00 0.00 3.01
898 923 1.392534 GGAGGGGAGGGAGTGAGAA 59.607 63.158 0.00 0.00 0.00 2.87
899 924 2.637640 GGGAGGGGAGGGAGTGAGA 61.638 68.421 0.00 0.00 0.00 3.27
902 927 2.041405 GAGGGAGGGGAGGGAGTG 60.041 72.222 0.00 0.00 0.00 3.51
903 928 3.756783 CGAGGGAGGGGAGGGAGT 61.757 72.222 0.00 0.00 0.00 3.85
988 1013 1.244019 GCCGGCATTGTCTTCAAGGT 61.244 55.000 24.80 0.00 37.61 3.50
1046 1071 1.061711 GTGAAGCAATGAGTAGCAGCG 59.938 52.381 0.00 0.00 0.00 5.18
1079 1104 2.291153 CCTCCTCCTCCATTGCAAGAAA 60.291 50.000 4.94 0.00 0.00 2.52
1128 1165 2.113243 GACCAAAGCTCACCTCGGGT 62.113 60.000 0.00 0.00 35.62 5.28
1139 1176 1.019805 GCCCGAGTACTGACCAAAGC 61.020 60.000 0.00 0.00 0.00 3.51
1162 1199 1.599047 CCTTGCTGTCCACCTCGAT 59.401 57.895 0.00 0.00 0.00 3.59
1298 1338 2.645838 AAGCCAAAGAGTTCAGCAGA 57.354 45.000 0.00 0.00 0.00 4.26
1299 1339 2.620115 TGAAAGCCAAAGAGTTCAGCAG 59.380 45.455 0.00 0.00 0.00 4.24
1301 1341 3.572584 CATGAAAGCCAAAGAGTTCAGC 58.427 45.455 0.00 0.00 33.74 4.26
1313 1354 1.678101 GCAGGATACACCATGAAAGCC 59.322 52.381 0.00 0.00 42.04 4.35
1344 1385 7.545265 GGAGCACATATTTAACTTGATTGCAAA 59.455 33.333 1.71 0.00 32.73 3.68
1389 1430 7.834803 AGCCAAAGAAGAAAATATGAAAGGAG 58.165 34.615 0.00 0.00 0.00 3.69
1425 1466 3.600388 AGTTCGGATCACATTCTGGTTC 58.400 45.455 0.00 0.00 0.00 3.62
1454 1495 7.176865 CCAATGATATCTCCAGAAATGAATGCT 59.823 37.037 3.98 0.00 0.00 3.79
1518 1566 1.378646 GAAGGCCCCTACACCAAGC 60.379 63.158 0.00 0.00 0.00 4.01
1618 1666 1.271102 GGTCGATAGGGAGCACTCATC 59.729 57.143 0.00 0.00 34.64 2.92
1628 1676 2.985896 TGCAGAAAAAGGTCGATAGGG 58.014 47.619 0.00 0.00 0.00 3.53
1635 1683 2.800881 CAGGGTTGCAGAAAAAGGTC 57.199 50.000 0.00 0.00 0.00 3.85
1651 1699 4.365723 GTGAATTGGAATTAGCATGCAGG 58.634 43.478 21.98 0.00 0.00 4.85
1735 1783 2.408271 TCACATTAGCTTCTGCAGGG 57.592 50.000 15.13 8.53 42.74 4.45
1736 1784 4.978083 AAATCACATTAGCTTCTGCAGG 57.022 40.909 15.13 0.00 42.74 4.85
1737 1785 5.587844 AGGTAAATCACATTAGCTTCTGCAG 59.412 40.000 7.63 7.63 39.83 4.41
1851 1899 8.494016 AACATTCAGTAATAAACCTCAGTAGC 57.506 34.615 0.00 0.00 0.00 3.58
1866 1942 6.712095 AGACAGATGCAAGAAAACATTCAGTA 59.288 34.615 0.00 0.00 0.00 2.74
1868 1944 5.856986 CAGACAGATGCAAGAAAACATTCAG 59.143 40.000 0.00 0.00 0.00 3.02
1873 1949 5.300034 ACATTCAGACAGATGCAAGAAAACA 59.700 36.000 0.00 0.00 0.00 2.83
1924 2000 4.030134 ACTATCTACGAAAAGGCAGTCG 57.970 45.455 0.00 3.39 42.91 4.18
1943 2019 9.227777 GAACTTATTTCCTACAAATGGTGTACT 57.772 33.333 0.00 0.00 41.98 2.73
1944 2020 9.227777 AGAACTTATTTCCTACAAATGGTGTAC 57.772 33.333 0.00 0.00 36.95 2.90
1980 2056 5.475564 ACAAAACATAAGTCCAACCGCTATT 59.524 36.000 0.00 0.00 0.00 1.73
1981 2057 5.007682 ACAAAACATAAGTCCAACCGCTAT 58.992 37.500 0.00 0.00 0.00 2.97
1986 2062 4.825085 TCCAGACAAAACATAAGTCCAACC 59.175 41.667 0.00 0.00 32.82 3.77
1992 2068 8.974060 TTAAGACTTCCAGACAAAACATAAGT 57.026 30.769 0.00 0.00 0.00 2.24
1993 2069 8.017946 GCTTAAGACTTCCAGACAAAACATAAG 58.982 37.037 6.67 0.00 0.00 1.73
2003 2079 5.140747 TCAAGAGCTTAAGACTTCCAGAC 57.859 43.478 6.67 0.00 0.00 3.51
2006 2082 4.262635 CCACTCAAGAGCTTAAGACTTCCA 60.263 45.833 6.67 0.02 0.00 3.53
2008 2084 4.021016 TCCCACTCAAGAGCTTAAGACTTC 60.021 45.833 6.67 0.35 0.00 3.01
2020 2096 3.455910 CCCATCATAACTCCCACTCAAGA 59.544 47.826 0.00 0.00 0.00 3.02
2066 2142 5.221501 ACACCATATTGCCCATTGCTTTATC 60.222 40.000 0.00 0.00 42.00 1.75
2079 2155 3.866910 CCTTTGCATGAACACCATATTGC 59.133 43.478 0.00 0.00 33.31 3.56
2147 2223 0.249657 CCGGCATAACTCTCTCCAGC 60.250 60.000 0.00 0.00 0.00 4.85
2228 2304 8.725148 GCAAAGAACATCTGAAGATTTAGAGAA 58.275 33.333 0.00 0.00 31.21 2.87
2246 2322 2.295909 TGCCCTGTTACATGCAAAGAAC 59.704 45.455 7.14 0.00 0.00 3.01
2259 2335 3.168035 TGTGGAATGTAATGCCCTGTT 57.832 42.857 0.00 0.00 43.77 3.16
2260 2336 2.825532 GTTGTGGAATGTAATGCCCTGT 59.174 45.455 0.00 0.00 43.77 4.00
2289 2365 6.656693 CCTTCTTATTGAACTCAACCATGACT 59.343 38.462 0.00 0.00 38.86 3.41
2377 2453 5.922544 AGAAACAGTAAAATGCATCAACAGC 59.077 36.000 0.00 0.00 0.00 4.40
2492 2568 2.295885 GAGTCTGAAATGAGGCCATGG 58.704 52.381 7.63 7.63 32.36 3.66
2723 2799 4.248859 ACGGATTCTGATCAGTTTGTGAG 58.751 43.478 21.92 11.08 37.40 3.51
2772 2848 6.662663 AGATAGCTGCCTTCTTTCTCAAAAAT 59.337 34.615 0.00 0.00 0.00 1.82
2776 2852 4.469227 AGAGATAGCTGCCTTCTTTCTCAA 59.531 41.667 0.00 0.00 39.51 3.02
2946 3022 2.649034 CTGCTGCAAACTGCCCAG 59.351 61.111 3.02 0.00 44.23 4.45
3002 3078 6.764085 TGTTTCTTTCTCGAAAGGTCACATTA 59.236 34.615 16.80 0.00 45.80 1.90
3041 3117 2.517959 ACACAAAGTACCTGCATGCAT 58.482 42.857 22.97 10.26 0.00 3.96
3043 3119 5.751680 CATATACACAAAGTACCTGCATGC 58.248 41.667 11.82 11.82 35.05 4.06
3044 3120 5.296531 TGCATATACACAAAGTACCTGCATG 59.703 40.000 8.58 0.00 43.19 4.06
3045 3121 5.436175 TGCATATACACAAAGTACCTGCAT 58.564 37.500 8.58 0.00 43.19 3.96
3046 3122 4.837972 TGCATATACACAAAGTACCTGCA 58.162 39.130 8.58 8.58 44.56 4.41
3047 3123 5.760253 AGATGCATATACACAAAGTACCTGC 59.240 40.000 0.00 0.00 40.88 4.85
3048 3124 6.763135 ACAGATGCATATACACAAAGTACCTG 59.237 38.462 0.00 0.00 35.05 4.00
3049 3125 6.889198 ACAGATGCATATACACAAAGTACCT 58.111 36.000 0.00 0.00 35.05 3.08
3050 3126 7.553881 AACAGATGCATATACACAAAGTACC 57.446 36.000 0.00 0.00 35.05 3.34
3057 3133 9.860898 GTCAGATATAACAGATGCATATACACA 57.139 33.333 0.00 0.00 0.00 3.72
3058 3134 9.307121 GGTCAGATATAACAGATGCATATACAC 57.693 37.037 0.00 0.00 0.00 2.90
3059 3135 8.190784 CGGTCAGATATAACAGATGCATATACA 58.809 37.037 0.00 0.00 0.00 2.29
3060 3136 8.191446 ACGGTCAGATATAACAGATGCATATAC 58.809 37.037 0.00 0.00 0.00 1.47
3061 3137 8.293699 ACGGTCAGATATAACAGATGCATATA 57.706 34.615 0.00 0.00 0.00 0.86
3062 3138 7.175347 ACGGTCAGATATAACAGATGCATAT 57.825 36.000 0.00 0.00 0.00 1.78
3063 3139 6.590234 ACGGTCAGATATAACAGATGCATA 57.410 37.500 0.00 0.00 0.00 3.14
3064 3140 5.474578 ACGGTCAGATATAACAGATGCAT 57.525 39.130 0.00 0.00 0.00 3.96
3065 3141 4.937201 ACGGTCAGATATAACAGATGCA 57.063 40.909 0.00 0.00 0.00 3.96
3066 3142 6.015027 ACTACGGTCAGATATAACAGATGC 57.985 41.667 0.00 0.00 0.00 3.91
3067 3143 7.921214 ACAAACTACGGTCAGATATAACAGATG 59.079 37.037 0.00 0.00 0.00 2.90
3085 3190 8.921670 ACAAAACAGAAAAACATGACAAACTAC 58.078 29.630 0.00 0.00 0.00 2.73
3183 3288 2.299521 ACTAGTACTCTGATGCCGGAC 58.700 52.381 5.05 0.00 0.00 4.79
3307 3414 2.143876 AAGGCAGTGAAACACAAGGT 57.856 45.000 0.00 0.00 41.43 3.50
3374 3481 8.818622 ATTCTTCATCTTCATTGATTCCTCAA 57.181 30.769 0.00 0.00 45.15 3.02
3375 3482 8.050930 TGATTCTTCATCTTCATTGATTCCTCA 58.949 33.333 0.00 0.00 32.34 3.86
3378 3485 8.630917 ACATGATTCTTCATCTTCATTGATTCC 58.369 33.333 0.00 0.00 40.70 3.01
3379 3486 9.452065 CACATGATTCTTCATCTTCATTGATTC 57.548 33.333 0.00 0.00 40.70 2.52
3391 3498 6.755141 GCAATGCTAAACACATGATTCTTCAT 59.245 34.615 0.00 0.00 43.51 2.57
3446 3553 8.210946 CCTTGTGTCAAGTCCCAATTCTATATA 58.789 37.037 8.37 0.00 0.00 0.86
3468 3575 6.238076 GCAAAGTACAATGTTCCAAAACCTTG 60.238 38.462 0.00 5.22 42.96 3.61
3585 3692 7.760794 ACAAATGCCACATGTTACATCATTTAG 59.239 33.333 16.77 14.26 33.15 1.85
3715 3822 1.135315 TCGAACCAAACTCGATACGGG 60.135 52.381 0.00 0.00 40.25 5.28
3908 4015 0.320247 CAAGAGAGCGTTCAGGCTGT 60.320 55.000 15.27 0.00 44.93 4.40
3952 4059 1.375326 GTTTCCGGAAGAGGCCTGT 59.625 57.895 17.97 1.36 0.00 4.00
3962 4069 4.030913 ACTATCATGAGAAGGTTTCCGGA 58.969 43.478 0.00 0.00 0.00 5.14
4108 4215 3.900941 ACAAAACCTTTAGAGCAATGCG 58.099 40.909 0.00 0.00 0.00 4.73
4174 4283 2.036346 GCACAAAAAGAACTGGCTGGAT 59.964 45.455 0.00 0.00 0.00 3.41
4312 4422 4.888326 AAAATAAGGTGCTCCAATGCAA 57.112 36.364 7.70 0.00 45.12 4.08
4448 4590 7.064609 GGCTATACGAACAATGCATGTATATGT 59.935 37.037 0.00 0.00 42.99 2.29
4449 4591 7.064490 TGGCTATACGAACAATGCATGTATATG 59.936 37.037 0.00 0.00 42.99 1.78
4451 4593 6.459923 TGGCTATACGAACAATGCATGTATA 58.540 36.000 0.00 6.80 42.99 1.47
4529 4681 9.226606 CATAGTTGGTTATTGTGGTTCTCTTTA 57.773 33.333 0.00 0.00 0.00 1.85
4556 4708 3.591196 TGGGCACAAACATTAGAATGC 57.409 42.857 2.09 0.00 40.04 3.56
4597 4749 3.306917 TCCGCGAACTCATGTAGAAAA 57.693 42.857 8.23 0.00 0.00 2.29
4598 4750 3.186909 CATCCGCGAACTCATGTAGAAA 58.813 45.455 8.23 0.00 0.00 2.52
4607 4759 4.467084 TGGCCCATCCGCGAACTC 62.467 66.667 8.23 0.00 37.80 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.