Multiple sequence alignment - TraesCS6A01G178100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G178100 chr6A 100.000 9057 0 0 1 9057 199818718 199809662 0.000000e+00 16726.0
1 TraesCS6A01G178100 chr6A 83.750 240 38 1 2960 3199 364945457 364945219 9.150000e-55 226.0
2 TraesCS6A01G178100 chr6A 76.000 225 37 9 30 247 415019423 415019637 5.790000e-17 100.0
3 TraesCS6A01G178100 chr6D 90.938 5374 300 89 3747 9057 147877820 147883069 0.000000e+00 7053.0
4 TraesCS6A01G178100 chr6D 94.699 2075 89 8 287 2353 147874864 147876925 0.000000e+00 3203.0
5 TraesCS6A01G178100 chr6D 89.989 919 68 9 2406 3309 147876925 147877834 0.000000e+00 1166.0
6 TraesCS6A01G178100 chr6D 83.860 285 31 10 3311 3586 461709609 461709887 3.240000e-64 257.0
7 TraesCS6A01G178100 chr6D 78.365 208 36 6 43 248 301846768 301846568 9.550000e-25 126.0
8 TraesCS6A01G178100 chr6D 97.778 45 0 1 3747 3790 425976736 425976692 9.750000e-10 76.8
9 TraesCS6A01G178100 chr6B 93.247 3539 148 23 5547 9057 260545089 260548564 0.000000e+00 5127.0
10 TraesCS6A01G178100 chr6B 94.002 2951 137 15 588 3512 260539917 260542853 0.000000e+00 4433.0
11 TraesCS6A01G178100 chr6B 93.977 1926 74 20 3629 5548 260543039 260544928 0.000000e+00 2876.0
12 TraesCS6A01G178100 chr6B 87.140 591 48 11 2 585 260539031 260539600 0.000000e+00 645.0
13 TraesCS6A01G178100 chr6B 87.805 123 13 2 3629 3750 132305990 132306111 9.480000e-30 143.0
14 TraesCS6A01G178100 chr6B 94.643 56 1 1 3587 3640 118960156 118960101 1.620000e-12 86.1
15 TraesCS6A01G178100 chr6B 97.917 48 1 0 3587 3634 439389857 439389904 5.830000e-12 84.2
16 TraesCS6A01G178100 chr6B 97.959 49 0 1 3587 3635 688564973 688565020 5.830000e-12 84.2
17 TraesCS6A01G178100 chr1B 88.889 396 26 4 5580 5967 490004152 490003767 1.060000e-128 472.0
18 TraesCS6A01G178100 chr1B 79.661 118 21 3 94 208 56998242 56998125 2.100000e-11 82.4
19 TraesCS6A01G178100 chr2A 86.093 453 34 11 5580 6031 16756761 16756337 2.300000e-125 460.0
20 TraesCS6A01G178100 chr2A 94.118 51 3 0 3587 3637 179294555 179294505 2.710000e-10 78.7
21 TraesCS6A01G178100 chr2A 94.444 36 1 1 3629 3663 716526051 716526016 5.000000e-03 54.7
22 TraesCS6A01G178100 chr3A 89.256 242 15 7 2958 3193 523754678 523754914 8.890000e-75 292.0
23 TraesCS6A01G178100 chr3A 97.959 49 0 1 3587 3635 594016675 594016628 5.830000e-12 84.2
24 TraesCS6A01G178100 chr3D 88.017 242 18 6 2958 3193 402804688 402804924 8.960000e-70 276.0
25 TraesCS6A01G178100 chr3D 79.498 239 37 10 31 262 32259655 32259888 9.410000e-35 159.0
26 TraesCS6A01G178100 chr2B 84.838 277 34 8 3315 3586 373994199 373994472 1.160000e-68 272.0
27 TraesCS6A01G178100 chr2B 88.670 203 16 5 3389 3586 776035865 776036065 3.270000e-59 241.0
28 TraesCS6A01G178100 chr2B 91.870 123 8 2 3629 3750 663888282 663888403 4.350000e-38 171.0
29 TraesCS6A01G178100 chr4B 87.029 239 27 4 2958 3196 464159284 464159050 5.390000e-67 267.0
30 TraesCS6A01G178100 chr3B 86.667 240 27 3 2958 3193 528639517 528639755 2.510000e-65 261.0
31 TraesCS6A01G178100 chr3B 81.404 285 44 6 3309 3589 66600060 66599781 3.290000e-54 224.0
32 TraesCS6A01G178100 chr7B 77.083 480 84 22 1501 1973 475655783 475656243 4.200000e-63 254.0
33 TraesCS6A01G178100 chr7B 82.332 283 41 5 3311 3589 327460197 327459920 4.230000e-58 237.0
34 TraesCS6A01G178100 chr7B 85.211 142 18 3 1261 1401 475655563 475655702 9.480000e-30 143.0
35 TraesCS6A01G178100 chr4D 87.805 205 23 2 2990 3193 378261588 378261385 1.180000e-58 239.0
36 TraesCS6A01G178100 chr4D 96.522 115 4 0 3195 3309 123728090 123728204 3.340000e-44 191.0
37 TraesCS6A01G178100 chr4D 96.522 115 4 0 3195 3309 134972181 134972067 3.340000e-44 191.0
38 TraesCS6A01G178100 chr4D 97.778 45 0 1 3747 3790 134972081 134972037 9.750000e-10 76.8
39 TraesCS6A01G178100 chr4D 100.000 32 0 0 177 208 87539814 87539783 9.820000e-05 60.2
40 TraesCS6A01G178100 chr4D 96.875 32 1 0 3361 3392 98301332 98301363 5.000000e-03 54.7
41 TraesCS6A01G178100 chr4D 100.000 29 0 0 3364 3392 183390323 183390295 5.000000e-03 54.7
42 TraesCS6A01G178100 chr1A 88.718 195 19 3 3395 3586 585632081 585632275 1.520000e-57 235.0
43 TraesCS6A01G178100 chr1A 96.000 50 1 1 3587 3635 76488975 76489024 7.540000e-11 80.5
44 TraesCS6A01G178100 chr5A 85.088 228 29 4 2959 3184 664846614 664846390 2.540000e-55 228.0
45 TraesCS6A01G178100 chr5D 87.065 201 23 3 3389 3586 556557598 556557798 3.290000e-54 224.0
46 TraesCS6A01G178100 chr5D 87.037 54 2 5 3339 3392 527510464 527510416 1.000000e-03 56.5
47 TraesCS6A01G178100 chr5D 87.037 54 2 5 3339 3392 527511805 527511757 1.000000e-03 56.5
48 TraesCS6A01G178100 chr5B 87.065 201 23 3 3389 3586 120574716 120574916 3.290000e-54 224.0
49 TraesCS6A01G178100 chr5B 83.465 127 15 5 3629 3751 120574533 120574657 7.430000e-21 113.0
50 TraesCS6A01G178100 chr5B 83.740 123 17 3 3629 3750 120574913 120575033 7.430000e-21 113.0
51 TraesCS6A01G178100 chr5B 96.875 32 1 0 3361 3392 120574212 120574243 5.000000e-03 54.7
52 TraesCS6A01G178100 chr5B 96.875 32 1 0 3361 3392 120574349 120574380 5.000000e-03 54.7
53 TraesCS6A01G178100 chr5B 100.000 29 0 0 3364 3392 664031510 664031482 5.000000e-03 54.7
54 TraesCS6A01G178100 chr5B 100.000 29 0 0 3364 3392 664032396 664032368 5.000000e-03 54.7
55 TraesCS6A01G178100 chr7A 86.935 199 25 1 1497 1694 545059688 545059886 1.180000e-53 222.0
56 TraesCS6A01G178100 chr7A 84.507 142 19 3 1262 1402 545059480 545059619 4.410000e-28 137.0
57 TraesCS6A01G178100 chr7A 87.342 79 6 4 3629 3704 680632546 680632623 4.500000e-13 87.9
58 TraesCS6A01G178100 chr7A 97.959 49 0 1 3587 3635 232317162 232317115 5.830000e-12 84.2
59 TraesCS6A01G178100 chr7A 82.955 88 13 2 7568 7654 18877531 18877445 2.710000e-10 78.7
60 TraesCS6A01G178100 chr7A 100.000 34 0 0 7070 7103 711295723 711295756 7.590000e-06 63.9
61 TraesCS6A01G178100 chr7D 87.568 185 23 0 1498 1682 452698651 452698835 1.980000e-51 215.0
62 TraesCS6A01G178100 chr7D 96.522 115 4 0 3195 3309 381878901 381879015 3.340000e-44 191.0
63 TraesCS6A01G178100 chr7D 90.164 122 12 0 4316 4437 452700377 452700498 9.410000e-35 159.0
64 TraesCS6A01G178100 chr7D 86.290 124 13 4 3629 3749 116987177 116987299 2.050000e-26 132.0
65 TraesCS6A01G178100 chr7D 83.803 142 20 3 1261 1401 452698430 452698569 2.050000e-26 132.0
66 TraesCS6A01G178100 chr7D 82.955 88 13 2 7568 7654 18428554 18428468 2.710000e-10 78.7
67 TraesCS6A01G178100 chr7D 97.778 45 0 1 3747 3790 203527169 203527213 9.750000e-10 76.8
68 TraesCS6A01G178100 chr7D 97.778 45 0 1 3747 3790 381879001 381879045 9.750000e-10 76.8
69 TraesCS6A01G178100 chrUn 96.522 115 4 0 3195 3309 381708666 381708780 3.340000e-44 191.0
70 TraesCS6A01G178100 chrUn 96.522 115 4 0 3195 3309 402972351 402972237 3.340000e-44 191.0
71 TraesCS6A01G178100 chrUn 82.955 88 13 2 7568 7654 50836431 50836345 2.710000e-10 78.7
72 TraesCS6A01G178100 chrUn 97.778 45 0 1 3747 3790 381708766 381708810 9.750000e-10 76.8
73 TraesCS6A01G178100 chrUn 97.778 45 0 1 3747 3790 402972251 402972207 9.750000e-10 76.8
74 TraesCS6A01G178100 chr2D 96.522 115 4 0 3195 3309 635022214 635022100 3.340000e-44 191.0
75 TraesCS6A01G178100 chr2D 97.778 45 0 1 3747 3790 635022114 635022070 9.750000e-10 76.8
76 TraesCS6A01G178100 chr2D 88.136 59 5 2 3629 3687 579061887 579061831 1.630000e-07 69.4
77 TraesCS6A01G178100 chr4A 95.652 115 5 0 3195 3309 295162129 295162243 1.550000e-42 185.0
78 TraesCS6A01G178100 chr1D 97.959 49 0 1 3587 3635 74399011 74399058 5.830000e-12 84.2
79 TraesCS6A01G178100 chr1D 97.872 47 1 0 3587 3633 384510687 384510641 2.100000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G178100 chr6A 199809662 199818718 9056 True 16726.000000 16726 100.000000 1 9057 1 chr6A.!!$R1 9056
1 TraesCS6A01G178100 chr6D 147874864 147883069 8205 False 3807.333333 7053 91.875333 287 9057 3 chr6D.!!$F2 8770
2 TraesCS6A01G178100 chr6B 260539031 260548564 9533 False 3270.250000 5127 92.091500 2 9057 4 chr6B.!!$F4 9055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1269 0.302890 CTGGATTCTTGATCGCGTGC 59.697 55.000 5.77 0.00 35.49 5.34 F
2136 2476 1.370051 GCTTTCGTTGTCCCAACGC 60.370 57.895 21.09 6.76 42.80 4.84 F
3715 4198 0.099791 CGCGTGGTTTTCACTGGTTT 59.900 50.000 0.00 0.00 43.94 3.27 F
4237 4730 0.170561 TCTTTAGTCTCGCGCTGTCC 59.829 55.000 5.56 0.00 0.00 4.02 F
4711 5207 0.249531 TGTCGCGGCACACTTTCTTA 60.250 50.000 10.57 0.00 0.00 2.10 F
4741 5240 0.321671 CCACCTGTCACCGAACTCAT 59.678 55.000 0.00 0.00 0.00 2.90 F
6441 7112 0.473326 GGCAAGAGCTCATCCAGGAT 59.527 55.000 17.77 0.00 41.70 3.24 F
6637 7309 0.584396 TGCACGGCGAAAGTGTTAAG 59.416 50.000 16.62 0.00 41.36 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2541 0.327924 ATGTCTGAAATCGGCACCCA 59.672 50.000 0.00 0.0 0.00 4.51 R
3717 4200 0.179012 ACGGAAACCCACATTCGGTT 60.179 50.000 0.00 0.0 45.70 4.44 R
4720 5216 0.038159 GAGTTCGGTGACAGGTGGAG 60.038 60.000 0.00 0.0 0.00 3.86 R
5723 6388 1.831580 CTCAAGCTCCTTTCCCTTGG 58.168 55.000 0.00 0.0 37.24 3.61 R
6689 7361 0.622136 AGCTCATTCTGTGCATGGGA 59.378 50.000 0.00 0.0 39.15 4.37 R
6712 7384 7.338196 TGAAGTTACACACAGAAAGGAAATTCA 59.662 33.333 0.00 0.0 29.93 2.57 R
7608 8283 0.035152 AGTCTGCATTTCATCCGCCA 60.035 50.000 0.00 0.0 0.00 5.69 R
8068 8747 1.821332 GCATGCCTGGGTGCTACTC 60.821 63.158 6.36 0.0 38.30 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 8.946085 GTAAGATGTTCAAATGTATGAGGTTCA 58.054 33.333 0.00 0.00 0.00 3.18
87 88 4.753107 AGGTTCATGCAAAATTTCAGCTTG 59.247 37.500 17.90 17.90 35.49 4.01
89 90 5.007921 GGTTCATGCAAAATTTCAGCTTGTT 59.992 36.000 20.75 4.45 35.62 2.83
92 93 7.783090 TCATGCAAAATTTCAGCTTGTTTAA 57.217 28.000 20.75 8.02 35.62 1.52
107 108 5.985530 GCTTGTTTAAACATTTGAGGAGCTT 59.014 36.000 21.17 0.00 38.95 3.74
145 148 4.846779 TTCCGAGGGTGAGAAATTTTTG 57.153 40.909 0.00 0.00 0.00 2.44
149 152 5.009610 TCCGAGGGTGAGAAATTTTTGAAAG 59.990 40.000 0.00 0.00 0.00 2.62
150 153 4.681483 CGAGGGTGAGAAATTTTTGAAAGC 59.319 41.667 0.00 0.00 0.00 3.51
151 154 5.600696 GAGGGTGAGAAATTTTTGAAAGCA 58.399 37.500 0.00 0.00 0.00 3.91
153 156 5.817296 AGGGTGAGAAATTTTTGAAAGCAAC 59.183 36.000 0.00 0.00 32.79 4.17
154 157 5.584251 GGGTGAGAAATTTTTGAAAGCAACA 59.416 36.000 0.00 0.00 32.79 3.33
155 158 6.456853 GGGTGAGAAATTTTTGAAAGCAACAC 60.457 38.462 0.00 0.00 32.79 3.32
156 159 6.313658 GGTGAGAAATTTTTGAAAGCAACACT 59.686 34.615 0.00 0.00 32.79 3.55
157 160 7.175410 GTGAGAAATTTTTGAAAGCAACACTG 58.825 34.615 0.00 0.00 32.79 3.66
158 161 6.873076 TGAGAAATTTTTGAAAGCAACACTGT 59.127 30.769 0.00 0.00 32.79 3.55
161 164 9.213799 AGAAATTTTTGAAAGCAACACTGTTTA 57.786 25.926 0.00 0.00 32.79 2.01
162 165 9.986833 GAAATTTTTGAAAGCAACACTGTTTAT 57.013 25.926 0.00 0.00 32.79 1.40
166 169 9.809096 TTTTTGAAAGCAACACTGTTTATATCA 57.191 25.926 0.00 0.00 32.79 2.15
168 171 7.144722 TGAAAGCAACACTGTTTATATCAGG 57.855 36.000 9.30 3.14 37.25 3.86
196 199 2.490328 TTTTTGCCACAAGCTTCTCG 57.510 45.000 0.00 0.00 44.23 4.04
203 206 2.413371 GCCACAAGCTTCTCGAATGTTC 60.413 50.000 0.00 0.00 38.99 3.18
211 214 3.665871 GCTTCTCGAATGTTCAAACAAGC 59.334 43.478 0.00 0.00 43.03 4.01
217 220 5.645624 TCGAATGTTCAAACAAGCTGAAAA 58.354 33.333 0.00 0.00 43.03 2.29
227 230 8.715191 TCAAACAAGCTGAAAATTTACACAAT 57.285 26.923 0.00 0.00 0.00 2.71
228 231 9.809096 TCAAACAAGCTGAAAATTTACACAATA 57.191 25.926 0.00 0.00 0.00 1.90
231 234 9.979578 AACAAGCTGAAAATTTACACAATATCA 57.020 25.926 0.00 0.00 0.00 2.15
232 235 9.410556 ACAAGCTGAAAATTTACACAATATCAC 57.589 29.630 0.00 0.00 0.00 3.06
233 236 8.577939 CAAGCTGAAAATTTACACAATATCACG 58.422 33.333 0.00 0.00 0.00 4.35
234 237 6.747280 AGCTGAAAATTTACACAATATCACGC 59.253 34.615 0.00 0.00 0.00 5.34
235 238 6.526325 GCTGAAAATTTACACAATATCACGCA 59.474 34.615 0.00 0.00 0.00 5.24
236 239 7.220683 GCTGAAAATTTACACAATATCACGCAT 59.779 33.333 0.00 0.00 0.00 4.73
239 242 9.674208 GAAAATTTACACAATATCACGCATTTG 57.326 29.630 0.00 0.00 0.00 2.32
240 243 8.978564 AAATTTACACAATATCACGCATTTGA 57.021 26.923 0.00 0.00 0.00 2.69
242 245 4.019919 ACACAATATCACGCATTTGAGC 57.980 40.909 0.00 0.00 0.00 4.26
243 246 3.439825 ACACAATATCACGCATTTGAGCA 59.560 39.130 0.00 0.00 0.00 4.26
256 261 5.682862 CGCATTTGAGCATCTTATAAACCAC 59.317 40.000 0.00 0.00 34.92 4.16
266 271 8.637986 AGCATCTTATAAACCACAAAAAGTTCA 58.362 29.630 0.00 0.00 0.00 3.18
269 274 9.981114 ATCTTATAAACCACAAAAAGTTCAAGG 57.019 29.630 0.00 0.00 0.00 3.61
271 276 8.934507 TTATAAACCACAAAAAGTTCAAGGTG 57.065 30.769 0.00 0.00 0.00 4.00
284 289 5.891451 AGTTCAAGGTGTTCTTTTTGCTAC 58.109 37.500 0.00 0.00 32.41 3.58
308 314 0.605589 GGATGTAGATGAGCTCGGGG 59.394 60.000 9.64 0.00 0.00 5.73
310 316 1.964223 GATGTAGATGAGCTCGGGGAA 59.036 52.381 9.64 0.00 0.00 3.97
334 340 4.670621 CGACTTGAATTTTCGTGGTGAAAG 59.329 41.667 0.00 0.00 46.72 2.62
403 409 2.123897 GTGCACACACCCCAACCT 60.124 61.111 13.17 0.00 41.21 3.50
591 912 1.873698 TCGTGACCTTTTACAGTGCC 58.126 50.000 0.00 0.00 0.00 5.01
592 913 0.511221 CGTGACCTTTTACAGTGCCG 59.489 55.000 0.00 0.00 0.00 5.69
638 962 1.255859 GTTTGGTAAAAACGCCGTTGC 59.744 47.619 1.95 0.00 0.00 4.17
887 1211 4.138290 TCTTCTTCTACTATCTCTGCCCG 58.862 47.826 0.00 0.00 0.00 6.13
918 1242 4.933064 CTGGACGGCGGATCGAGC 62.933 72.222 13.24 0.00 0.00 5.03
942 1266 0.811219 TGCCTGGATTCTTGATCGCG 60.811 55.000 0.00 0.00 35.49 5.87
943 1267 0.811616 GCCTGGATTCTTGATCGCGT 60.812 55.000 5.77 0.00 35.49 6.01
945 1269 0.302890 CTGGATTCTTGATCGCGTGC 59.697 55.000 5.77 0.00 35.49 5.34
1104 1428 2.732094 CAAAGCAGCTTGGCGCAC 60.732 61.111 8.88 0.00 42.61 5.34
1347 1674 1.603455 CGTGGTGAAGGCCAACCAT 60.603 57.895 23.17 0.00 40.68 3.55
1408 1735 1.868251 GTAAGTCGCTCGCCACTCG 60.868 63.158 0.00 0.00 40.15 4.18
1807 2136 5.022021 CGACTAATTGATTTCGTTTGCCTC 58.978 41.667 0.00 0.00 0.00 4.70
2018 2353 2.279252 CCGGACATTAGGACGCCG 60.279 66.667 0.00 0.00 41.53 6.46
2102 2437 5.404946 CAAATGGGATTGTCACTCAACATC 58.595 41.667 0.00 0.00 38.97 3.06
2120 2460 6.434340 TCAACATCGGTGAGATACTATATGCT 59.566 38.462 0.65 0.00 37.52 3.79
2123 2463 7.316640 ACATCGGTGAGATACTATATGCTTTC 58.683 38.462 0.65 0.00 37.52 2.62
2136 2476 1.370051 GCTTTCGTTGTCCCAACGC 60.370 57.895 21.09 6.76 42.80 4.84
2156 2496 3.067320 CGCTACCTGTCTCTTGATGATCA 59.933 47.826 0.00 0.00 0.00 2.92
2158 2498 5.609423 GCTACCTGTCTCTTGATGATCAAT 58.391 41.667 8.50 0.00 35.59 2.57
2193 2541 1.344763 GTGTGTCCTGAGCTTACACCT 59.655 52.381 15.55 0.00 42.22 4.00
2255 2603 1.705337 CGCTGCCGGTGATCGATTTT 61.705 55.000 1.90 0.00 42.43 1.82
2396 2748 9.464714 CACTACTACTTACATTACATAGGCAAG 57.535 37.037 0.00 0.00 0.00 4.01
2434 2786 2.014128 CTTGTTCGGTTGTGAACTGGT 58.986 47.619 7.97 0.00 46.59 4.00
2436 2788 1.339247 TGTTCGGTTGTGAACTGGTGT 60.339 47.619 7.97 0.00 46.59 4.16
2515 2867 6.591834 GTCAAGCAGATAAAGAAAGCTCTACA 59.408 38.462 0.00 0.00 33.83 2.74
2543 2895 0.246635 AGGTCGAAATCACTCACCGG 59.753 55.000 0.00 0.00 31.92 5.28
2561 2913 2.550639 CCGGGGAAGTTTAAGACGGAAA 60.551 50.000 0.00 0.00 42.19 3.13
2631 2983 3.565482 TGTTCTGAAATCTCTGTTGGTGC 59.435 43.478 0.00 0.00 0.00 5.01
2711 3063 8.810652 TTGTCAGTTTTAGTGCCATAAAATTC 57.189 30.769 6.50 0.00 37.08 2.17
2718 3070 6.509418 TTAGTGCCATAAAATTCACCTGAC 57.491 37.500 0.00 0.00 0.00 3.51
2719 3071 3.763897 AGTGCCATAAAATTCACCTGACC 59.236 43.478 0.00 0.00 0.00 4.02
2724 3076 2.649531 AAAATTCACCTGACCGGACA 57.350 45.000 9.46 7.70 36.31 4.02
2761 3113 5.946377 GGAACTTCAGTTTATTCCAGGATGT 59.054 40.000 0.00 0.00 40.38 3.06
2771 3123 9.802039 AGTTTATTCCAGGATGTTTTGTAGTTA 57.198 29.630 0.00 0.00 0.00 2.24
2905 3264 4.609947 TGTAGCATGAACAGCAGTTTTTG 58.390 39.130 0.00 0.00 38.30 2.44
2921 3280 6.035975 GCAGTTTTTGTTAACAACTTGAGCAT 59.964 34.615 20.43 0.00 35.28 3.79
2951 3310 7.171508 ACTGGTTGATACATGAAACTATATGCG 59.828 37.037 0.00 0.00 0.00 4.73
2978 3337 4.478686 AGTTAGGCCTCCTTTGGTTCATAT 59.521 41.667 9.68 0.00 34.61 1.78
3305 3672 0.468226 GATGACCGTCCCATTAGCCA 59.532 55.000 0.00 0.00 0.00 4.75
3319 3686 4.260170 CATTAGCCAGCCAGGAGAATATC 58.740 47.826 0.00 0.00 41.22 1.63
3324 3691 3.008375 GCCAGCCAGGAGAATATCATACA 59.992 47.826 0.00 0.00 41.22 2.29
3337 3704 9.553064 GAGAATATCATACAGAGACCAACATTT 57.447 33.333 0.00 0.00 0.00 2.32
3349 3716 9.237846 CAGAGACCAACATTTAAAGAAAACTTC 57.762 33.333 0.00 0.00 0.00 3.01
3356 3723 8.531530 CAACATTTAAAGAAAACTTCGTGGAAG 58.468 33.333 3.92 3.92 44.37 3.46
3368 3735 1.051812 CGTGGAAGCCATAGGAGGAT 58.948 55.000 0.00 0.00 35.28 3.24
3421 3788 8.997323 GGATGTTAAGAGGATGATGTTCTATTG 58.003 37.037 0.00 0.00 0.00 1.90
3488 3855 7.467557 TGAAAAAGACAAATTCAGCAATGAC 57.532 32.000 0.00 0.00 0.00 3.06
3495 3862 6.148480 AGACAAATTCAGCAATGACTAGTGAC 59.852 38.462 0.00 0.00 0.00 3.67
3505 3872 5.164080 GCAATGACTAGTGACGTTACTGTTC 60.164 44.000 22.06 16.98 32.19 3.18
3508 3875 2.248487 CTAGTGACGTTACTGTTCGGC 58.752 52.381 22.06 6.92 35.47 5.54
3572 4054 9.927081 ATCCCTAATGTATCTGAACTTGAAATT 57.073 29.630 0.00 0.00 0.00 1.82
3609 4091 2.905959 GCAATGAAATGCAAAAGCCC 57.094 45.000 0.00 0.00 45.70 5.19
3610 4092 2.429478 GCAATGAAATGCAAAAGCCCT 58.571 42.857 0.00 0.00 45.70 5.19
3611 4093 2.815503 GCAATGAAATGCAAAAGCCCTT 59.184 40.909 0.00 0.00 45.70 3.95
3612 4094 3.253921 GCAATGAAATGCAAAAGCCCTTT 59.746 39.130 0.00 0.00 45.70 3.11
3613 4095 4.789784 CAATGAAATGCAAAAGCCCTTTG 58.210 39.130 0.00 4.82 46.20 2.77
3622 4104 4.737353 CAAAAGCCCTTTGCATTTTCTC 57.263 40.909 0.00 0.00 38.73 2.87
3623 4105 2.730550 AAGCCCTTTGCATTTTCTCG 57.269 45.000 0.00 0.00 44.83 4.04
3624 4106 1.909700 AGCCCTTTGCATTTTCTCGA 58.090 45.000 0.00 0.00 44.83 4.04
3625 4107 2.238521 AGCCCTTTGCATTTTCTCGAA 58.761 42.857 0.00 0.00 44.83 3.71
3626 4108 2.627699 AGCCCTTTGCATTTTCTCGAAA 59.372 40.909 0.00 0.00 44.83 3.46
3627 4109 3.069443 AGCCCTTTGCATTTTCTCGAAAA 59.931 39.130 7.22 7.22 44.83 2.29
3628 4110 3.807071 GCCCTTTGCATTTTCTCGAAAAA 59.193 39.130 8.69 7.59 42.71 1.94
3706 4189 3.430333 ACATCTTTTTCGCGTGGTTTT 57.570 38.095 5.77 0.00 0.00 2.43
3708 4191 3.181495 ACATCTTTTTCGCGTGGTTTTCA 60.181 39.130 5.77 0.00 0.00 2.69
3709 4192 2.788030 TCTTTTTCGCGTGGTTTTCAC 58.212 42.857 5.77 0.00 42.74 3.18
3710 4193 2.420722 TCTTTTTCGCGTGGTTTTCACT 59.579 40.909 5.77 0.00 43.94 3.41
3711 4194 2.181426 TTTTCGCGTGGTTTTCACTG 57.819 45.000 5.77 0.00 43.94 3.66
3712 4195 0.378962 TTTCGCGTGGTTTTCACTGG 59.621 50.000 5.77 0.00 43.94 4.00
3713 4196 0.745128 TTCGCGTGGTTTTCACTGGT 60.745 50.000 5.77 0.00 43.94 4.00
3714 4197 0.745128 TCGCGTGGTTTTCACTGGTT 60.745 50.000 5.77 0.00 43.94 3.67
3715 4198 0.099791 CGCGTGGTTTTCACTGGTTT 59.900 50.000 0.00 0.00 43.94 3.27
3716 4199 1.835121 GCGTGGTTTTCACTGGTTTC 58.165 50.000 0.00 0.00 43.94 2.78
3717 4200 1.133407 GCGTGGTTTTCACTGGTTTCA 59.867 47.619 0.00 0.00 43.94 2.69
3869 4360 4.217767 GGAGGCCTTAGTTTTTGGTGTTAG 59.782 45.833 6.77 0.00 0.00 2.34
3987 4480 5.761234 TCCTTTCTTACACTGTTACGCAAAT 59.239 36.000 0.00 0.00 0.00 2.32
4090 4583 4.216257 ACAGTTTCCCAATTGACGATGAAG 59.784 41.667 7.12 0.00 0.00 3.02
4131 4624 8.336801 AGTACTTCAAGGAAATGTATGGTTTC 57.663 34.615 0.00 0.00 35.38 2.78
4237 4730 0.170561 TCTTTAGTCTCGCGCTGTCC 59.829 55.000 5.56 0.00 0.00 4.02
4239 4732 1.529152 TTTAGTCTCGCGCTGTCCCA 61.529 55.000 5.56 0.00 0.00 4.37
4245 4738 1.901650 CTCGCGCTGTCCCAAACTTC 61.902 60.000 5.56 0.00 0.00 3.01
4319 4812 3.055819 ACACGAGATGCTTATTGACAGGT 60.056 43.478 0.00 0.00 0.00 4.00
4383 4876 8.283699 TGAATGAAAAGCAGATCACATCATTA 57.716 30.769 0.00 0.00 36.48 1.90
4440 4933 5.475719 GAAATGGATATTCGACGGGTATGA 58.524 41.667 0.00 0.00 0.00 2.15
4588 5084 8.770438 TTAACATGCCAAGTTTATTTCAATCC 57.230 30.769 0.00 0.00 0.00 3.01
4592 5088 5.237048 TGCCAAGTTTATTTCAATCCTTGC 58.763 37.500 0.00 0.00 0.00 4.01
4616 5112 8.387354 TGCGTAGTACATTGAAGAATATTGTTG 58.613 33.333 2.01 0.00 0.00 3.33
4626 5122 6.101332 TGAAGAATATTGTTGGCTTCATTGC 58.899 36.000 2.01 0.00 39.77 3.56
4643 5139 3.808466 TTGCCACACTTTGCAACATAA 57.192 38.095 0.00 0.00 42.19 1.90
4653 5149 6.005583 ACTTTGCAACATAAGTGACAGATG 57.994 37.500 0.00 0.00 33.55 2.90
4657 5153 4.213906 TGCAACATAAGTGACAGATGTGTG 59.786 41.667 0.00 5.79 36.88 3.82
4683 5179 4.201970 GCTACTGTTTGTTTTACTGGCACA 60.202 41.667 0.00 0.00 0.00 4.57
4684 5180 4.792521 ACTGTTTGTTTTACTGGCACAA 57.207 36.364 0.00 0.00 38.70 3.33
4685 5181 5.140747 ACTGTTTGTTTTACTGGCACAAA 57.859 34.783 0.00 0.00 38.70 2.83
4709 5205 2.108157 TGTCGCGGCACACTTTCT 59.892 55.556 10.57 0.00 0.00 2.52
4710 5206 1.522806 TGTCGCGGCACACTTTCTT 60.523 52.632 10.57 0.00 0.00 2.52
4711 5207 0.249531 TGTCGCGGCACACTTTCTTA 60.250 50.000 10.57 0.00 0.00 2.10
4714 5210 1.225376 CGCGGCACACTTTCTTACCA 61.225 55.000 0.00 0.00 0.00 3.25
4717 5213 0.881796 GGCACACTTTCTTACCAGCC 59.118 55.000 0.00 0.00 0.00 4.85
4718 5214 1.545651 GGCACACTTTCTTACCAGCCT 60.546 52.381 0.00 0.00 37.89 4.58
4719 5215 1.537202 GCACACTTTCTTACCAGCCTG 59.463 52.381 0.00 0.00 0.00 4.85
4720 5216 1.537202 CACACTTTCTTACCAGCCTGC 59.463 52.381 0.00 0.00 0.00 4.85
4740 5239 0.757561 TCCACCTGTCACCGAACTCA 60.758 55.000 0.00 0.00 0.00 3.41
4741 5240 0.321671 CCACCTGTCACCGAACTCAT 59.678 55.000 0.00 0.00 0.00 2.90
4743 5242 2.168521 CCACCTGTCACCGAACTCATAT 59.831 50.000 0.00 0.00 0.00 1.78
4755 5255 5.708230 ACCGAACTCATATACTTTTGCCAAA 59.292 36.000 0.00 0.00 0.00 3.28
4756 5256 6.128007 ACCGAACTCATATACTTTTGCCAAAG 60.128 38.462 8.65 8.65 44.57 2.77
4777 5277 7.928706 CCAAAGTTGTGGACACCAATTTATTTA 59.071 33.333 2.40 0.00 41.65 1.40
4823 5323 4.022068 CAGTTTAGCAGGAAAATCTTGGCA 60.022 41.667 0.00 0.00 0.00 4.92
4905 5405 8.721478 CATAATTCAGTCAAAACCCGATATAGG 58.279 37.037 0.00 0.00 0.00 2.57
4907 5407 5.531122 TCAGTCAAAACCCGATATAGGAG 57.469 43.478 2.98 0.00 0.00 3.69
4926 5426 3.440522 GGAGGAGTACAATTTTCACTGCC 59.559 47.826 0.00 0.00 31.62 4.85
4971 5471 7.984002 TTGTTTCATTACACAACATTGAGTG 57.016 32.000 5.12 10.82 41.40 3.51
5157 5657 2.092212 ACCCTGGGTAAGATCAATGCTG 60.092 50.000 18.99 0.00 32.11 4.41
5775 6440 1.444933 TCCTCCCTGACAACAATGGT 58.555 50.000 0.00 0.00 0.00 3.55
5917 6582 3.848019 GTGACATAAAGCGCATTTGTGAG 59.152 43.478 24.42 11.58 41.21 3.51
5930 6595 2.940994 TTGTGAGACCGAATTGGGAA 57.059 45.000 14.12 0.00 44.64 3.97
6034 6699 9.676861 AATGTTAAGGTAGTTATTAACTGGGAC 57.323 33.333 17.47 8.86 42.84 4.46
6186 6856 2.401766 GGACGCGGTAAGTCGGAGA 61.402 63.158 12.47 0.00 39.38 3.71
6205 6875 3.881688 GAGAATCCCATTGGTCAGTGATG 59.118 47.826 1.20 0.00 0.00 3.07
6237 6907 4.545823 AATATTTGGTGCGGATGTAACG 57.454 40.909 0.00 0.00 0.00 3.18
6343 7014 9.751542 GTTTCCATATGATATCCTCTAATACGG 57.248 37.037 3.65 0.00 0.00 4.02
6408 7079 0.673644 AGTACGCTGGATTGGTGTGC 60.674 55.000 0.00 0.00 0.00 4.57
6441 7112 0.473326 GGCAAGAGCTCATCCAGGAT 59.527 55.000 17.77 0.00 41.70 3.24
6480 7151 2.125753 CCTCAGCGAGGCACTGTC 60.126 66.667 10.89 0.00 43.29 3.51
6556 7227 7.923888 ACACATCATCTGTAAAGATAATGCAC 58.076 34.615 6.00 0.00 35.91 4.57
6623 7295 1.458445 GATCATCCGTCATCATGCACG 59.542 52.381 0.00 5.08 35.72 5.34
6637 7309 0.584396 TGCACGGCGAAAGTGTTAAG 59.416 50.000 16.62 0.00 41.36 1.85
6653 7325 6.166982 AGTGTTAAGTAGAGCATCCAACTTC 58.833 40.000 0.00 0.00 39.97 3.01
6833 7505 2.555325 ACTTCACTGTGCATGTTGGATG 59.445 45.455 2.12 0.00 0.00 3.51
6844 7516 2.189594 TGTTGGATGTCTCTTGCAGG 57.810 50.000 0.00 0.00 0.00 4.85
6976 7648 8.753175 CAAGTATTACTTTACGAGTTAGATGCC 58.247 37.037 6.34 0.00 36.03 4.40
7030 7702 6.257849 CCTATTATGTTGACATGCTTACACGT 59.742 38.462 6.87 0.00 37.15 4.49
7035 7707 5.743467 TGTTGACATGCTTACACGTTAAAG 58.257 37.500 0.00 2.86 0.00 1.85
7046 7718 8.875803 TGCTTACACGTTAAAGTATCCTAATTG 58.124 33.333 8.11 0.00 0.00 2.32
7170 7843 4.317769 GCAAACAACCACAACGATAAAAGC 60.318 41.667 0.00 0.00 0.00 3.51
7209 7882 4.884164 GGAAATATCCTGCCTGGTATATGC 59.116 45.833 0.00 0.00 42.93 3.14
7213 7886 1.352017 TCCTGCCTGGTATATGCCATG 59.648 52.381 13.40 11.62 37.96 3.66
7245 7918 9.716531 TCCATCATCAAGATATTGATAACTCAC 57.283 33.333 14.91 0.00 39.47 3.51
7329 8002 2.552599 TAGGCACCGTTGTTGATTCA 57.447 45.000 0.00 0.00 0.00 2.57
7371 8044 4.006319 AGTTTGATTTCTACCTCTGCAGC 58.994 43.478 9.47 0.00 0.00 5.25
7440 8113 6.322201 AGGATTGCCTTGATTTCATATTTCGT 59.678 34.615 0.00 0.00 43.90 3.85
7479 8152 5.798934 GCTTGAATGTACAAAATGCAGAGAG 59.201 40.000 0.00 0.00 0.00 3.20
7480 8153 6.569226 GCTTGAATGTACAAAATGCAGAGAGT 60.569 38.462 0.00 0.00 0.00 3.24
7499 8173 9.416794 CAGAGAGTAGCCTGTACAATAATTATG 57.583 37.037 0.00 0.00 0.00 1.90
7608 8283 3.750371 TGTGGGACGAGAACAATTTCAT 58.250 40.909 0.00 0.00 33.72 2.57
7615 8290 2.355756 CGAGAACAATTTCATGGCGGAT 59.644 45.455 0.00 0.00 33.72 4.18
7633 8308 3.725895 CGGATGAAATGCAGACTTTGACG 60.726 47.826 0.00 0.00 32.20 4.35
7706 8381 6.313658 ACTTTTTCAGAACCAAAGTTGCATTC 59.686 34.615 7.03 0.00 37.44 2.67
7723 8398 6.078202 TGCATTCCGTTATTCAGTTTGAAA 57.922 33.333 0.00 0.00 40.12 2.69
7761 8436 2.268298 GTGAATTCGTCGCAGGTATGT 58.732 47.619 0.04 0.00 36.70 2.29
7825 8504 2.483876 GCGCTCCTGCTGAATACATTA 58.516 47.619 0.00 0.00 36.97 1.90
7826 8505 2.872245 GCGCTCCTGCTGAATACATTAA 59.128 45.455 0.00 0.00 36.97 1.40
7834 8513 7.394016 TCCTGCTGAATACATTAACTCTTTCA 58.606 34.615 0.00 0.00 0.00 2.69
7849 8528 5.278604 ACTCTTTCAACGTAACAATTTGGC 58.721 37.500 0.78 0.00 0.00 4.52
7852 8531 3.529634 TCAACGTAACAATTTGGCGAG 57.470 42.857 14.07 8.26 0.00 5.03
7876 8555 3.586470 TCTGAACTTTGGCCTTTGGTA 57.414 42.857 3.32 0.00 0.00 3.25
7982 8661 0.443869 CTCGGTGAAGAATGCCAACG 59.556 55.000 0.00 0.00 44.09 4.10
8017 8696 0.179048 CCATGAAGACTATGCCGGCA 60.179 55.000 34.80 34.80 0.00 5.69
8068 8747 1.986882 ACTGCTGACAAGGGGAAAAG 58.013 50.000 0.00 0.00 0.00 2.27
8070 8749 2.157738 CTGCTGACAAGGGGAAAAGAG 58.842 52.381 0.00 0.00 0.00 2.85
8072 8751 2.708861 TGCTGACAAGGGGAAAAGAGTA 59.291 45.455 0.00 0.00 0.00 2.59
8195 8879 6.145338 TGTAAAAACTTGGCCGATGTTTTA 57.855 33.333 23.86 18.74 39.68 1.52
8198 8882 6.538189 AAAAACTTGGCCGATGTTTTATTG 57.462 33.333 23.86 2.01 39.68 1.90
8201 8885 3.443681 ACTTGGCCGATGTTTTATTGAGG 59.556 43.478 0.00 0.00 0.00 3.86
8203 8887 1.067060 GGCCGATGTTTTATTGAGGGC 59.933 52.381 0.00 0.00 38.56 5.19
8205 8889 2.285083 CCGATGTTTTATTGAGGGCGA 58.715 47.619 0.00 0.00 0.00 5.54
8327 9042 1.275010 GGGGTTGTGCTGTATTTTGGG 59.725 52.381 0.00 0.00 0.00 4.12
8328 9043 1.337728 GGGTTGTGCTGTATTTTGGGC 60.338 52.381 0.00 0.00 0.00 5.36
8329 9044 1.342819 GGTTGTGCTGTATTTTGGGCA 59.657 47.619 0.00 0.00 0.00 5.36
8330 9045 2.028203 GGTTGTGCTGTATTTTGGGCAT 60.028 45.455 0.00 0.00 37.05 4.40
8331 9046 3.194542 GGTTGTGCTGTATTTTGGGCATA 59.805 43.478 0.00 0.00 37.05 3.14
8332 9047 4.141959 GGTTGTGCTGTATTTTGGGCATAT 60.142 41.667 0.00 0.00 37.05 1.78
8333 9048 5.068460 GGTTGTGCTGTATTTTGGGCATATA 59.932 40.000 0.00 0.00 37.05 0.86
8334 9049 6.239289 GGTTGTGCTGTATTTTGGGCATATAT 60.239 38.462 0.00 0.00 37.05 0.86
8335 9050 6.330004 TGTGCTGTATTTTGGGCATATATG 57.670 37.500 8.45 8.45 37.05 1.78
8336 9051 6.067350 TGTGCTGTATTTTGGGCATATATGA 58.933 36.000 17.10 0.00 37.05 2.15
8337 9052 6.548993 TGTGCTGTATTTTGGGCATATATGAA 59.451 34.615 17.10 1.69 37.05 2.57
8338 9053 7.069208 TGTGCTGTATTTTGGGCATATATGAAA 59.931 33.333 17.10 8.15 37.05 2.69
8339 9054 7.382218 GTGCTGTATTTTGGGCATATATGAAAC 59.618 37.037 17.10 5.93 37.05 2.78
8340 9055 7.069208 TGCTGTATTTTGGGCATATATGAAACA 59.931 33.333 17.10 8.38 0.00 2.83
8341 9056 7.382218 GCTGTATTTTGGGCATATATGAAACAC 59.618 37.037 17.10 7.78 0.00 3.32
8342 9057 8.298729 TGTATTTTGGGCATATATGAAACACA 57.701 30.769 17.10 10.10 0.00 3.72
8343 9058 8.922237 TGTATTTTGGGCATATATGAAACACAT 58.078 29.630 17.10 8.26 42.39 3.21
8344 9059 9.195411 GTATTTTGGGCATATATGAAACACATG 57.805 33.333 17.10 0.00 39.77 3.21
8345 9060 7.415592 TTTTGGGCATATATGAAACACATGA 57.584 32.000 17.10 0.00 39.77 3.07
8346 9061 7.600231 TTTGGGCATATATGAAACACATGAT 57.400 32.000 17.10 0.00 39.77 2.45
8347 9062 6.822667 TGGGCATATATGAAACACATGATC 57.177 37.500 17.10 0.00 39.77 2.92
8348 9063 6.545567 TGGGCATATATGAAACACATGATCT 58.454 36.000 17.10 0.00 39.77 2.75
8349 9064 7.005902 TGGGCATATATGAAACACATGATCTT 58.994 34.615 17.10 0.00 39.77 2.40
8350 9065 7.040271 TGGGCATATATGAAACACATGATCTTG 60.040 37.037 17.10 7.04 39.77 3.02
8351 9066 7.175467 GGGCATATATGAAACACATGATCTTGA 59.825 37.037 17.10 0.00 39.77 3.02
8386 9101 4.090761 CCAGAATTAGGCAAGGCTCATA 57.909 45.455 0.00 0.00 0.00 2.15
8614 9332 7.785506 ACTCCCAGTAAACAGCTATAGATACTT 59.214 37.037 3.21 0.00 0.00 2.24
8749 9472 5.288804 ACATTTGGTTCCATCAAAAACTCG 58.711 37.500 0.00 0.00 37.60 4.18
8854 9577 2.803956 CTGTTTGATGACCGTACCGTTT 59.196 45.455 0.00 0.00 0.00 3.60
8860 9583 0.463204 TGACCGTACCGTTTGTGGAA 59.537 50.000 0.00 0.00 0.00 3.53
8881 9613 5.453198 GGAAGCAACATTTTCTTGAAGGGAA 60.453 40.000 0.00 0.00 0.00 3.97
8908 9640 0.951040 CTGTCCCAACGACTTGAGCC 60.951 60.000 0.00 0.00 42.49 4.70
8937 9669 1.673665 CCGCCTCTGCTTTCAGCTT 60.674 57.895 0.00 0.00 42.97 3.74
8986 9718 1.251527 GGGGAGAGAACTGCGAGTCA 61.252 60.000 0.00 0.00 35.29 3.41
8998 9730 0.606604 GCGAGTCAAGGGACCTTACA 59.393 55.000 2.78 0.00 45.48 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.729756 CCTCATACATTTGAACATCTTACACAA 58.270 33.333 0.00 0.00 0.00 3.33
60 61 6.071221 AGCTGAAATTTTGCATGAACCTCATA 60.071 34.615 15.97 0.00 34.28 2.15
61 62 4.933400 GCTGAAATTTTGCATGAACCTCAT 59.067 37.500 0.00 0.00 37.65 2.90
62 63 4.039488 AGCTGAAATTTTGCATGAACCTCA 59.961 37.500 15.97 0.00 0.00 3.86
70 71 7.983307 TGTTTAAACAAGCTGAAATTTTGCAT 58.017 26.923 18.54 4.94 35.67 3.96
87 88 5.691754 CCACAAGCTCCTCAAATGTTTAAAC 59.308 40.000 11.54 11.54 0.00 2.01
89 90 4.261994 GCCACAAGCTCCTCAAATGTTTAA 60.262 41.667 0.00 0.00 38.99 1.52
92 93 1.615392 GCCACAAGCTCCTCAAATGTT 59.385 47.619 0.00 0.00 38.99 2.71
127 130 4.681483 GCTTTCAAAAATTTCTCACCCTCG 59.319 41.667 0.00 0.00 0.00 4.63
129 132 5.612725 TGCTTTCAAAAATTTCTCACCCT 57.387 34.783 0.00 0.00 0.00 4.34
131 134 6.313658 AGTGTTGCTTTCAAAAATTTCTCACC 59.686 34.615 0.00 0.00 33.37 4.02
145 148 7.145932 ACCTGATATAAACAGTGTTGCTTTC 57.854 36.000 9.79 5.89 34.04 2.62
149 152 7.145323 ACAAAACCTGATATAAACAGTGTTGC 58.855 34.615 9.79 0.00 33.08 4.17
150 153 8.567948 AGACAAAACCTGATATAAACAGTGTTG 58.432 33.333 9.79 0.00 33.08 3.33
151 154 8.691661 AGACAAAACCTGATATAAACAGTGTT 57.308 30.769 1.64 1.64 33.64 3.32
153 156 9.965824 AAAAGACAAAACCTGATATAAACAGTG 57.034 29.630 8.69 0.00 34.04 3.66
186 189 4.847633 TGTTTGAACATTCGAGAAGCTTG 58.152 39.130 2.10 0.00 33.17 4.01
192 195 4.126437 TCAGCTTGTTTGAACATTCGAGA 58.874 39.130 0.00 0.00 38.95 4.04
196 199 9.636965 GTAAATTTTCAGCTTGTTTGAACATTC 57.363 29.630 0.00 0.00 35.19 2.67
211 214 8.619146 ATGCGTGATATTGTGTAAATTTTCAG 57.381 30.769 0.00 0.00 0.00 3.02
217 220 6.692681 GCTCAAATGCGTGATATTGTGTAAAT 59.307 34.615 0.00 0.00 0.00 1.40
227 230 7.961325 TTATAAGATGCTCAAATGCGTGATA 57.039 32.000 0.00 0.00 35.36 2.15
228 231 6.866010 TTATAAGATGCTCAAATGCGTGAT 57.134 33.333 0.00 0.00 35.36 3.06
229 232 6.458206 GGTTTATAAGATGCTCAAATGCGTGA 60.458 38.462 0.00 0.00 35.36 4.35
230 233 5.682862 GGTTTATAAGATGCTCAAATGCGTG 59.317 40.000 0.00 0.00 35.36 5.34
231 234 5.356751 TGGTTTATAAGATGCTCAAATGCGT 59.643 36.000 0.00 0.00 35.36 5.24
232 235 5.682862 GTGGTTTATAAGATGCTCAAATGCG 59.317 40.000 0.00 0.00 35.36 4.73
233 236 6.563422 TGTGGTTTATAAGATGCTCAAATGC 58.437 36.000 0.00 0.00 0.00 3.56
234 237 8.984891 TTTGTGGTTTATAAGATGCTCAAATG 57.015 30.769 0.00 0.00 0.00 2.32
235 238 9.995003 TTTTTGTGGTTTATAAGATGCTCAAAT 57.005 25.926 0.00 0.00 0.00 2.32
236 239 9.474920 CTTTTTGTGGTTTATAAGATGCTCAAA 57.525 29.630 0.00 0.00 0.00 2.69
239 242 9.129209 GAACTTTTTGTGGTTTATAAGATGCTC 57.871 33.333 0.00 0.00 0.00 4.26
240 243 8.637986 TGAACTTTTTGTGGTTTATAAGATGCT 58.362 29.630 0.00 0.00 0.00 3.79
243 246 9.981114 CCTTGAACTTTTTGTGGTTTATAAGAT 57.019 29.630 0.00 0.00 0.00 2.40
266 271 4.439563 CGGTTGTAGCAAAAAGAACACCTT 60.440 41.667 0.00 0.00 36.47 3.50
269 274 3.065648 TCCGGTTGTAGCAAAAAGAACAC 59.934 43.478 0.00 0.00 0.00 3.32
271 276 3.974871 TCCGGTTGTAGCAAAAAGAAC 57.025 42.857 0.00 0.00 0.00 3.01
284 289 2.748605 GAGCTCATCTACATCCGGTTG 58.251 52.381 9.40 11.06 0.00 3.77
308 314 3.966218 CACCACGAAAATTCAAGTCGTTC 59.034 43.478 0.00 0.00 45.17 3.95
314 320 4.298332 CCCTTTCACCACGAAAATTCAAG 58.702 43.478 0.00 0.00 43.01 3.02
326 332 1.128809 TCTTACGGCCCCTTTCACCA 61.129 55.000 0.00 0.00 0.00 4.17
334 340 1.668151 GCATCGATCTTACGGCCCC 60.668 63.158 0.00 0.00 0.00 5.80
515 522 5.220989 GGGAGTATTTTTATGGAACGGAAGC 60.221 44.000 0.00 0.00 0.00 3.86
525 532 5.357032 ACAGAAAGGCGGGAGTATTTTTATG 59.643 40.000 0.00 0.00 0.00 1.90
945 1269 0.318107 CAACAAGACAAAGCAGGCGG 60.318 55.000 0.00 0.00 0.00 6.13
948 1272 0.381801 ACGCAACAAGACAAAGCAGG 59.618 50.000 0.00 0.00 0.00 4.85
1443 1770 2.282180 ATGGTCACCACGGTTGCC 60.282 61.111 0.00 0.00 35.80 4.52
1483 1810 1.234821 GCAGGACATCGAAAACACCA 58.765 50.000 0.00 0.00 0.00 4.17
1716 2045 1.079681 GCCGATTGTGTGTACCGGA 60.080 57.895 9.46 0.00 42.49 5.14
1924 2259 1.991099 GACGTCGAGGACCTGTAGGC 61.991 65.000 12.85 0.00 39.32 3.93
2102 2437 5.700846 ACGAAAGCATATAGTATCTCACCG 58.299 41.667 0.00 0.00 0.00 4.94
2136 2476 6.479331 CACATTGATCATCAAGAGACAGGTAG 59.521 42.308 6.19 0.00 40.05 3.18
2156 2496 3.638160 ACACACAAGGAAGCAATCACATT 59.362 39.130 0.00 0.00 0.00 2.71
2158 2498 2.618241 GACACACAAGGAAGCAATCACA 59.382 45.455 0.00 0.00 0.00 3.58
2193 2541 0.327924 ATGTCTGAAATCGGCACCCA 59.672 50.000 0.00 0.00 0.00 4.51
2252 2600 2.359850 AGGATCTGCGCCGCAAAA 60.360 55.556 14.77 4.51 38.41 2.44
2341 2689 7.032580 CACTAGTCTGGATATAGCACATAAGC 58.967 42.308 0.00 0.00 0.00 3.09
2342 2690 8.341892 TCACTAGTCTGGATATAGCACATAAG 57.658 38.462 0.00 0.00 0.00 1.73
2396 2748 5.607119 ACAAGTACGAATTTCACATGGTC 57.393 39.130 0.00 0.00 0.00 4.02
2454 2806 6.656693 ACCATATAAACTAATCAGGCATCAGC 59.343 38.462 0.00 0.00 41.10 4.26
2515 2867 4.315803 AGTGATTTCGACCTTCAAATCGT 58.684 39.130 0.00 0.00 40.50 3.73
2543 2895 5.808042 GGTATTTCCGTCTTAAACTTCCC 57.192 43.478 0.00 0.00 0.00 3.97
2682 3034 4.098914 TGGCACTAAAACTGACAATCCT 57.901 40.909 0.00 0.00 0.00 3.24
2698 3050 3.427503 CGGTCAGGTGAATTTTATGGCAC 60.428 47.826 0.00 0.00 0.00 5.01
2711 3063 3.343617 ACATTTAATGTCCGGTCAGGTG 58.656 45.455 7.60 4.23 39.92 4.00
2718 3070 5.592688 AGTTCCCATAACATTTAATGTCCGG 59.407 40.000 11.24 11.23 44.07 5.14
2719 3071 6.693315 AGTTCCCATAACATTTAATGTCCG 57.307 37.500 11.24 3.15 44.07 4.79
2761 3113 6.993308 TCAGTTGCCAGTACATAACTACAAAA 59.007 34.615 0.00 0.00 36.03 2.44
2771 3123 4.584325 ACAAACATTCAGTTGCCAGTACAT 59.416 37.500 0.00 0.00 41.19 2.29
2905 3264 5.687285 CCAGTTCAATGCTCAAGTTGTTAAC 59.313 40.000 2.11 0.00 0.00 2.01
2921 3280 8.862325 ATAGTTTCATGTATCAACCAGTTCAA 57.138 30.769 0.00 0.00 0.00 2.69
2951 3310 2.307980 ACCAAAGGAGGCCTAACTAACC 59.692 50.000 4.42 0.12 31.13 2.85
2978 3337 8.972662 TTCCTATTCCCATGATACTTCTATCA 57.027 34.615 0.00 0.00 42.45 2.15
3157 3517 7.454694 AGCCCTTTGGTTTGTAAGAATAGATTT 59.545 33.333 0.00 0.00 0.00 2.17
3263 3630 2.933573 TCGAACCAAGGTAAAAGGCAA 58.066 42.857 0.00 0.00 0.00 4.52
3305 3672 5.480073 GTCTCTGTATGATATTCTCCTGGCT 59.520 44.000 0.00 0.00 0.00 4.75
3324 3691 8.129211 CGAAGTTTTCTTTAAATGTTGGTCTCT 58.871 33.333 0.00 0.00 40.61 3.10
3337 3704 4.200874 TGGCTTCCACGAAGTTTTCTTTA 58.799 39.130 3.52 0.00 41.61 1.85
3349 3716 1.051812 ATCCTCCTATGGCTTCCACG 58.948 55.000 0.00 0.00 35.80 4.94
3356 3723 5.690464 ATAGAACATCATCCTCCTATGGC 57.310 43.478 0.00 0.00 0.00 4.40
3392 3759 5.919348 ACATCATCCTCTTAACATCCCAT 57.081 39.130 0.00 0.00 0.00 4.00
3450 3817 4.274459 GTCTTTTTCATAGCTCGCATCCAT 59.726 41.667 0.00 0.00 0.00 3.41
3451 3818 3.623060 GTCTTTTTCATAGCTCGCATCCA 59.377 43.478 0.00 0.00 0.00 3.41
3452 3819 3.623060 TGTCTTTTTCATAGCTCGCATCC 59.377 43.478 0.00 0.00 0.00 3.51
3453 3820 4.864916 TGTCTTTTTCATAGCTCGCATC 57.135 40.909 0.00 0.00 0.00 3.91
3454 3821 5.627499 TTTGTCTTTTTCATAGCTCGCAT 57.373 34.783 0.00 0.00 0.00 4.73
3455 3822 5.627499 ATTTGTCTTTTTCATAGCTCGCA 57.373 34.783 0.00 0.00 0.00 5.10
3456 3823 6.086222 TGAATTTGTCTTTTTCATAGCTCGC 58.914 36.000 0.00 0.00 0.00 5.03
3488 3855 2.248487 GCCGAACAGTAACGTCACTAG 58.752 52.381 0.00 0.00 0.00 2.57
3495 3862 3.247442 TGAATAGTGCCGAACAGTAACG 58.753 45.455 0.00 0.00 37.72 3.18
3505 3872 3.976793 AATCAGCATTGAATAGTGCCG 57.023 42.857 0.00 0.00 42.20 5.69
3508 3875 8.752766 AAAGACAAAATCAGCATTGAATAGTG 57.247 30.769 0.00 0.00 36.78 2.74
3601 4083 3.184986 CGAGAAAATGCAAAGGGCTTTTG 59.815 43.478 16.86 16.86 45.82 2.44
3603 4085 2.627699 TCGAGAAAATGCAAAGGGCTTT 59.372 40.909 0.00 0.00 45.15 3.51
3604 4086 2.238521 TCGAGAAAATGCAAAGGGCTT 58.761 42.857 0.00 0.00 45.15 4.35
3605 4087 1.909700 TCGAGAAAATGCAAAGGGCT 58.090 45.000 0.00 0.00 45.15 5.19
3606 4088 2.723124 TTCGAGAAAATGCAAAGGGC 57.277 45.000 0.00 0.00 45.13 5.19
3625 4107 8.934023 TGTTAAGAGGGTGATGTTCTATTTTT 57.066 30.769 0.00 0.00 0.00 1.94
3626 4108 9.178758 GATGTTAAGAGGGTGATGTTCTATTTT 57.821 33.333 0.00 0.00 0.00 1.82
3627 4109 7.775561 GGATGTTAAGAGGGTGATGTTCTATTT 59.224 37.037 0.00 0.00 0.00 1.40
3628 4110 7.283329 GGATGTTAAGAGGGTGATGTTCTATT 58.717 38.462 0.00 0.00 0.00 1.73
3629 4111 6.183361 GGGATGTTAAGAGGGTGATGTTCTAT 60.183 42.308 0.00 0.00 0.00 1.98
3630 4112 5.130477 GGGATGTTAAGAGGGTGATGTTCTA 59.870 44.000 0.00 0.00 0.00 2.10
3631 4113 4.080299 GGGATGTTAAGAGGGTGATGTTCT 60.080 45.833 0.00 0.00 0.00 3.01
3711 4194 1.324383 ACCCACATTCGGTTGAAACC 58.676 50.000 1.88 1.88 45.76 3.27
3712 4195 3.377439 GAAACCCACATTCGGTTGAAAC 58.623 45.455 0.00 0.00 42.90 2.78
3713 4196 2.362717 GGAAACCCACATTCGGTTGAAA 59.637 45.455 0.00 0.00 42.90 2.69
3714 4197 1.957877 GGAAACCCACATTCGGTTGAA 59.042 47.619 0.00 0.00 42.90 2.69
3715 4198 1.611519 GGAAACCCACATTCGGTTGA 58.388 50.000 0.00 0.00 42.90 3.18
3716 4199 0.239879 CGGAAACCCACATTCGGTTG 59.760 55.000 0.00 0.00 42.90 3.77
3717 4200 0.179012 ACGGAAACCCACATTCGGTT 60.179 50.000 0.00 0.00 45.70 4.44
3727 4210 4.286291 AGGGAGAATATCATACGGAAACCC 59.714 45.833 0.00 0.00 0.00 4.11
3798 4281 9.495382 AGGAATTCCATAGTATAGGATTCCTAC 57.505 37.037 22.82 6.06 42.94 3.18
3831 4314 2.508300 GGCCTCCTATGGTTTGTAGGAA 59.492 50.000 0.00 0.00 45.24 3.36
3832 4315 2.124411 GGCCTCCTATGGTTTGTAGGA 58.876 52.381 0.00 2.26 44.12 2.94
3833 4316 2.127708 AGGCCTCCTATGGTTTGTAGG 58.872 52.381 0.00 0.00 40.08 3.18
3834 4317 3.933861 AAGGCCTCCTATGGTTTGTAG 57.066 47.619 5.23 0.00 31.13 2.74
3835 4318 4.368067 ACTAAGGCCTCCTATGGTTTGTA 58.632 43.478 5.23 0.00 31.13 2.41
3836 4319 3.190439 ACTAAGGCCTCCTATGGTTTGT 58.810 45.455 5.23 0.00 31.13 2.83
3837 4320 3.933861 ACTAAGGCCTCCTATGGTTTG 57.066 47.619 5.23 0.00 31.13 2.93
3838 4321 4.948062 AAACTAAGGCCTCCTATGGTTT 57.052 40.909 5.23 8.39 31.13 3.27
3898 4391 7.974504 AGGAGTTAGGACAAGTTTGAATTAGA 58.025 34.615 0.00 0.00 0.00 2.10
4090 4583 6.154445 TGAAGTACTCTACAACCGATTTCAC 58.846 40.000 0.00 0.00 0.00 3.18
4131 4624 4.380867 GGAAGATGTGGTTGCTTTATGGTG 60.381 45.833 0.00 0.00 0.00 4.17
4237 4730 3.012518 CACTGGCTGATAGGAAGTTTGG 58.987 50.000 0.00 0.00 0.00 3.28
4239 4732 2.040278 TGCACTGGCTGATAGGAAGTTT 59.960 45.455 0.00 0.00 41.91 2.66
4245 4738 3.198409 TGTATTGCACTGGCTGATAGG 57.802 47.619 0.00 0.00 41.91 2.57
4282 4775 3.568430 TCTCGTGTCACACAGTATTCAGT 59.432 43.478 9.06 0.00 33.40 3.41
4289 4782 0.676184 AGCATCTCGTGTCACACAGT 59.324 50.000 9.06 0.00 33.40 3.55
4293 4786 3.926527 GTCAATAAGCATCTCGTGTCACA 59.073 43.478 3.42 0.00 0.00 3.58
4319 4812 3.817084 CTGACCTTCAACAATCTTGCAGA 59.183 43.478 0.00 0.00 0.00 4.26
4383 4876 4.853924 CCTTTGGCATGTAACTTTCAGT 57.146 40.909 0.00 0.00 0.00 3.41
4440 4933 8.621286 CACTTTTGAGTATACCAAGAAACACTT 58.379 33.333 0.00 0.00 39.70 3.16
4548 5042 8.893219 TGGCATGTTAATTATTGAAAACAACA 57.107 26.923 0.00 0.00 35.63 3.33
4549 5043 9.810231 CTTGGCATGTTAATTATTGAAAACAAC 57.190 29.630 0.00 0.00 35.63 3.32
4585 5081 5.339008 TCTTCAATGTACTACGCAAGGAT 57.661 39.130 0.00 0.00 46.39 3.24
4592 5088 7.850982 GCCAACAATATTCTTCAATGTACTACG 59.149 37.037 0.00 0.00 0.00 3.51
4641 5137 5.710567 AGTAGCTACACACATCTGTCACTTA 59.289 40.000 25.28 0.00 0.00 2.24
4643 5139 4.082517 CAGTAGCTACACACATCTGTCACT 60.083 45.833 25.28 0.00 0.00 3.41
4651 5147 6.693315 AAAACAAACAGTAGCTACACACAT 57.307 33.333 25.28 1.45 0.00 3.21
4653 5149 7.123830 CAGTAAAACAAACAGTAGCTACACAC 58.876 38.462 25.28 0.87 0.00 3.82
4657 5153 5.237779 TGCCAGTAAAACAAACAGTAGCTAC 59.762 40.000 16.43 16.43 0.00 3.58
4683 5179 0.515564 GTGCCGCGACACTTACATTT 59.484 50.000 18.82 0.00 37.58 2.32
4684 5180 0.601576 TGTGCCGCGACACTTACATT 60.602 50.000 25.68 0.00 41.30 2.71
4685 5181 1.005512 TGTGCCGCGACACTTACAT 60.006 52.632 25.68 0.00 41.30 2.29
4707 5203 1.553690 GGTGGAGCAGGCTGGTAAGA 61.554 60.000 20.63 3.34 0.00 2.10
4709 5205 1.538876 AGGTGGAGCAGGCTGGTAA 60.539 57.895 20.63 8.37 0.00 2.85
4710 5206 2.122729 AGGTGGAGCAGGCTGGTA 59.877 61.111 20.63 1.41 0.00 3.25
4711 5207 3.644606 CAGGTGGAGCAGGCTGGT 61.645 66.667 20.74 20.74 0.00 4.00
4714 5210 2.527624 TGACAGGTGGAGCAGGCT 60.528 61.111 0.00 0.00 0.00 4.58
4717 5213 2.047844 CGGTGACAGGTGGAGCAG 60.048 66.667 0.00 0.00 0.00 4.24
4718 5214 2.137528 TTCGGTGACAGGTGGAGCA 61.138 57.895 0.00 0.00 0.00 4.26
4719 5215 1.668151 GTTCGGTGACAGGTGGAGC 60.668 63.158 0.00 0.00 0.00 4.70
4720 5216 0.038159 GAGTTCGGTGACAGGTGGAG 60.038 60.000 0.00 0.00 0.00 3.86
4755 5255 6.551601 TGGTAAATAAATTGGTGTCCACAACT 59.448 34.615 0.00 0.00 33.92 3.16
4756 5256 6.643360 GTGGTAAATAAATTGGTGTCCACAAC 59.357 38.462 0.00 0.00 41.34 3.32
4757 5257 6.323996 TGTGGTAAATAAATTGGTGTCCACAA 59.676 34.615 14.69 0.00 45.95 3.33
4758 5258 5.833667 TGTGGTAAATAAATTGGTGTCCACA 59.166 36.000 13.68 13.68 46.47 4.17
4759 5259 6.153756 GTGTGGTAAATAAATTGGTGTCCAC 58.846 40.000 0.00 0.00 41.83 4.02
4760 5260 5.244178 GGTGTGGTAAATAAATTGGTGTCCA 59.756 40.000 0.00 0.00 0.00 4.02
4761 5261 5.336929 GGGTGTGGTAAATAAATTGGTGTCC 60.337 44.000 0.00 0.00 0.00 4.02
4762 5262 5.479027 AGGGTGTGGTAAATAAATTGGTGTC 59.521 40.000 0.00 0.00 0.00 3.67
4763 5263 5.399113 AGGGTGTGGTAAATAAATTGGTGT 58.601 37.500 0.00 0.00 0.00 4.16
4764 5264 5.993748 AGGGTGTGGTAAATAAATTGGTG 57.006 39.130 0.00 0.00 0.00 4.17
4777 5277 1.686587 GCAAGCTAAAAAGGGTGTGGT 59.313 47.619 0.00 0.00 0.00 4.16
4864 5364 6.262944 ACTGAATTATGTTGAAGCACTGACAA 59.737 34.615 0.00 0.00 0.00 3.18
4865 5365 5.764686 ACTGAATTATGTTGAAGCACTGACA 59.235 36.000 0.00 0.00 0.00 3.58
4905 5405 3.440522 GGGCAGTGAAAATTGTACTCCTC 59.559 47.826 0.00 0.00 0.00 3.71
4907 5407 2.161609 CGGGCAGTGAAAATTGTACTCC 59.838 50.000 0.00 0.00 0.00 3.85
4926 5426 0.883833 ACAAGAAGAATTGGCAGCGG 59.116 50.000 0.00 0.00 34.36 5.52
4971 5471 2.427095 GGGCCAGACCATGTTTTATGTC 59.573 50.000 4.39 0.00 42.05 3.06
5157 5657 4.427312 CTGGCAATAGCAAATTGGAGAAC 58.573 43.478 12.19 0.00 44.61 3.01
5723 6388 1.831580 CTCAAGCTCCTTTCCCTTGG 58.168 55.000 0.00 0.00 37.24 3.61
5775 6440 2.300433 GCATCCTCACCATACAATGCA 58.700 47.619 0.00 0.00 39.36 3.96
5917 6582 4.638421 TGTGACATTATTCCCAATTCGGTC 59.362 41.667 0.00 0.00 0.00 4.79
6034 6699 3.268013 GTGTGAAACGAAGACCATTGG 57.732 47.619 0.00 0.00 42.39 3.16
6062 6732 7.013083 AGAGACTAACTTACTTTCTGAACGTGA 59.987 37.037 9.52 1.02 0.00 4.35
6186 6856 3.744940 ACATCACTGACCAATGGGATT 57.255 42.857 3.55 0.00 38.05 3.01
6205 6875 5.437263 CGCACCAAATATTATTGTCGGTAC 58.563 41.667 5.54 0.00 0.00 3.34
6237 6907 1.556911 TCCTCTCTGGTTTCAGGATGC 59.443 52.381 0.00 0.00 41.23 3.91
6270 6940 3.694072 TGCTAAATCTTACCGCAGCAATT 59.306 39.130 0.00 0.00 36.18 2.32
6330 7000 6.229936 TGTAAAAGCACCGTATTAGAGGAT 57.770 37.500 0.00 0.00 0.00 3.24
6343 7014 3.436700 AGCAACAACCTGTAAAAGCAC 57.563 42.857 0.00 0.00 0.00 4.40
6441 7112 4.883585 GGATCATGCCATGTTTTGTAGAGA 59.116 41.667 4.31 0.00 0.00 3.10
6480 7151 1.227764 CCTGATCATGCCTCCGGTG 60.228 63.158 0.00 0.00 0.00 4.94
6552 7223 1.852942 GTCTCGAGTGAACTTGTGCA 58.147 50.000 13.13 0.00 0.00 4.57
6553 7224 0.778815 CGTCTCGAGTGAACTTGTGC 59.221 55.000 13.13 0.00 0.00 4.57
6556 7227 2.401017 TGTCGTCTCGAGTGAACTTG 57.599 50.000 13.13 0.00 36.23 3.16
6599 7270 4.023450 GTGCATGATGACGGATGATCAAAT 60.023 41.667 0.00 0.00 32.43 2.32
6623 7295 3.323243 TGCTCTACTTAACACTTTCGCC 58.677 45.455 0.00 0.00 0.00 5.54
6625 7297 5.168569 TGGATGCTCTACTTAACACTTTCG 58.831 41.667 0.00 0.00 0.00 3.46
6637 7309 5.016051 TGATCTGAAGTTGGATGCTCTAC 57.984 43.478 0.00 0.00 0.00 2.59
6689 7361 0.622136 AGCTCATTCTGTGCATGGGA 59.378 50.000 0.00 0.00 39.15 4.37
6712 7384 7.338196 TGAAGTTACACACAGAAAGGAAATTCA 59.662 33.333 0.00 0.00 29.93 2.57
6833 7505 2.814336 CCTTTTGTACCCTGCAAGAGAC 59.186 50.000 0.00 0.00 34.07 3.36
6844 7516 3.511699 GCATTAGCAAGCCTTTTGTACC 58.488 45.455 0.00 0.00 41.58 3.34
6868 7540 6.151985 TGAACTTCCATACAACACAAAACTGT 59.848 34.615 0.00 0.00 0.00 3.55
6976 7648 1.238439 AGTTGACAACCTTGCGGATG 58.762 50.000 14.72 0.00 38.90 3.51
7030 7702 7.184936 TCCAAGGGGTCAATTAGGATACTTTAA 59.815 37.037 0.00 0.00 41.53 1.52
7035 7707 5.584551 ATCCAAGGGGTCAATTAGGATAC 57.415 43.478 0.00 0.00 32.94 2.24
7046 7718 2.959030 GCCTGAAAATATCCAAGGGGTC 59.041 50.000 0.00 0.00 34.93 4.46
7170 7843 3.114616 CCGCTCTTGTCGGTGCTG 61.115 66.667 0.00 0.00 41.85 4.41
7194 7867 1.830279 CATGGCATATACCAGGCAGG 58.170 55.000 0.00 0.00 44.71 4.85
7209 7882 3.639561 TCTTGATGATGGAAATGGCATGG 59.360 43.478 0.00 0.00 0.00 3.66
7213 7886 7.223260 TCAATATCTTGATGATGGAAATGGC 57.777 36.000 0.00 0.00 36.46 4.40
7245 7918 8.306761 AGGGCAAAGAAAATGTAAGTCAATAAG 58.693 33.333 0.00 0.00 0.00 1.73
7329 8002 3.053395 ACTGTGTGGGATGGCATATCTTT 60.053 43.478 0.00 0.00 0.00 2.52
7394 8067 4.616802 CCTTTCAAAATTCAATCGGACACG 59.383 41.667 0.00 0.00 42.74 4.49
7400 8073 5.870978 AGGCAATCCTTTCAAAATTCAATCG 59.129 36.000 0.00 0.00 40.66 3.34
7438 8111 4.820897 TCAAGCCTATAATCATAGCCACG 58.179 43.478 0.00 0.00 33.95 4.94
7440 8113 6.782986 ACATTCAAGCCTATAATCATAGCCA 58.217 36.000 0.00 0.00 33.95 4.75
7608 8283 0.035152 AGTCTGCATTTCATCCGCCA 60.035 50.000 0.00 0.00 0.00 5.69
7615 8290 3.625313 TGTTCGTCAAAGTCTGCATTTCA 59.375 39.130 0.00 0.00 0.00 2.69
7633 8308 4.708601 CATACGTGTAGCAAAGGTTGTTC 58.291 43.478 0.00 0.00 0.00 3.18
7774 8449 6.371825 GGAAGAAATTACCGACAGAAACAGAT 59.628 38.462 0.00 0.00 0.00 2.90
7825 8504 5.746721 GCCAAATTGTTACGTTGAAAGAGTT 59.253 36.000 0.00 0.00 0.00 3.01
7826 8505 5.278604 GCCAAATTGTTACGTTGAAAGAGT 58.721 37.500 0.00 0.00 0.00 3.24
7834 8513 4.555348 TTTCTCGCCAAATTGTTACGTT 57.445 36.364 0.00 0.00 0.00 3.99
7849 8528 3.077359 AGGCCAAAGTTCAGATTTCTCG 58.923 45.455 5.01 0.00 0.00 4.04
7852 8531 4.202253 ACCAAAGGCCAAAGTTCAGATTTC 60.202 41.667 5.01 0.00 0.00 2.17
7876 8555 3.772932 CACTGCTCAAACAACACAACAT 58.227 40.909 0.00 0.00 0.00 2.71
7982 8661 4.570874 GGCGCCTCCATTCCTCCC 62.571 72.222 22.15 0.00 34.01 4.30
8017 8696 2.903135 CCTCTTCACCCTCTCTTTCACT 59.097 50.000 0.00 0.00 0.00 3.41
8068 8747 1.821332 GCATGCCTGGGTGCTACTC 60.821 63.158 6.36 0.00 38.30 2.59
8327 9042 7.749570 GCTCAAGATCATGTGTTTCATATATGC 59.250 37.037 7.92 0.00 34.67 3.14
8328 9043 8.780249 TGCTCAAGATCATGTGTTTCATATATG 58.220 33.333 6.36 6.36 34.67 1.78
8329 9044 8.913487 TGCTCAAGATCATGTGTTTCATATAT 57.087 30.769 0.00 0.00 34.67 0.86
8330 9045 8.913487 ATGCTCAAGATCATGTGTTTCATATA 57.087 30.769 0.00 0.00 34.67 0.86
8331 9046 7.818997 ATGCTCAAGATCATGTGTTTCATAT 57.181 32.000 0.00 0.00 34.67 1.78
8332 9047 8.913487 ATATGCTCAAGATCATGTGTTTCATA 57.087 30.769 0.00 0.00 34.67 2.15
8333 9048 7.818997 ATATGCTCAAGATCATGTGTTTCAT 57.181 32.000 0.00 0.00 37.22 2.57
8334 9049 8.913487 ATATATGCTCAAGATCATGTGTTTCA 57.087 30.769 0.00 0.00 0.00 2.69
8335 9050 9.608617 CAATATATGCTCAAGATCATGTGTTTC 57.391 33.333 0.00 0.00 0.00 2.78
8336 9051 9.346005 TCAATATATGCTCAAGATCATGTGTTT 57.654 29.630 0.00 0.00 0.00 2.83
8337 9052 8.913487 TCAATATATGCTCAAGATCATGTGTT 57.087 30.769 0.00 0.00 0.00 3.32
8338 9053 8.947115 CATCAATATATGCTCAAGATCATGTGT 58.053 33.333 0.00 0.00 0.00 3.72
8386 9101 8.853077 TCTGAACACTGATCAGACAATTAATT 57.147 30.769 29.27 10.22 46.23 1.40
8461 9179 5.248477 TCCATGCTCAAAAGTTACTACTCCT 59.752 40.000 0.00 0.00 31.99 3.69
8462 9180 5.351740 GTCCATGCTCAAAAGTTACTACTCC 59.648 44.000 0.00 0.00 31.99 3.85
8614 9332 7.155655 TGTAGCATATTTTTGACTTCATGCA 57.844 32.000 7.07 0.00 40.89 3.96
8680 9400 2.772102 TGCTGGGAAAGGCAGTAGA 58.228 52.632 0.00 0.00 34.22 2.59
8749 9472 5.884232 CACCCCCAGAAATTTAGTTAGTACC 59.116 44.000 0.00 0.00 0.00 3.34
8854 9577 4.998671 TCAAGAAAATGTTGCTTCCACA 57.001 36.364 0.00 0.00 0.00 4.17
8860 9583 4.202253 GGTTCCCTTCAAGAAAATGTTGCT 60.202 41.667 0.00 0.00 0.00 3.91
8881 9613 2.833957 GTTGGGACAGGGAACGGT 59.166 61.111 0.00 0.00 42.39 4.83
8908 9640 0.797249 CAGAGGCGGTAGAAACGACG 60.797 60.000 0.00 0.00 45.85 5.12
8937 9669 0.787084 AGACCTGGAGAGGGAACAGA 59.213 55.000 0.00 0.00 44.84 3.41
8986 9718 2.669240 GGCGCTGTAAGGTCCCTT 59.331 61.111 7.64 3.69 39.83 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.