Multiple sequence alignment - TraesCS6A01G176300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G176300 chr6A 100.000 2591 0 0 1 2591 193460729 193458139 0.000000e+00 4785.0
1 TraesCS6A01G176300 chr6A 91.961 1418 92 11 1185 2591 225657133 225655727 0.000000e+00 1967.0
2 TraesCS6A01G176300 chr6A 84.971 173 17 6 2422 2589 265991241 265991073 1.590000e-37 167.0
3 TraesCS6A01G176300 chr4A 92.384 1418 87 9 1185 2591 15679782 15681189 0.000000e+00 2001.0
4 TraesCS6A01G176300 chr4A 90.054 1116 90 14 1210 2310 675642558 675641449 0.000000e+00 1426.0
5 TraesCS6A01G176300 chr4A 87.228 736 73 13 1564 2289 33926601 33925877 0.000000e+00 819.0
6 TraesCS6A01G176300 chr4A 92.199 141 11 0 15 155 170620613 170620753 1.570000e-47 200.0
7 TraesCS6A01G176300 chr4A 87.135 171 19 2 547 714 675643104 675642934 9.460000e-45 191.0
8 TraesCS6A01G176300 chr4A 88.235 102 11 1 531 631 554005976 554006077 1.260000e-23 121.0
9 TraesCS6A01G176300 chr7A 90.120 1417 91 19 1185 2591 282381208 282379831 0.000000e+00 1796.0
10 TraesCS6A01G176300 chr7B 88.569 1111 102 15 1210 2309 392931573 392930477 0.000000e+00 1325.0
11 TraesCS6A01G176300 chr7B 82.819 454 59 14 673 1118 392932020 392931578 3.130000e-104 388.0
12 TraesCS6A01G176300 chr1A 89.545 966 63 12 1639 2591 119666526 119667466 0.000000e+00 1190.0
13 TraesCS6A01G176300 chr1A 88.776 392 36 3 1259 1650 119666083 119666466 8.390000e-130 473.0
14 TraesCS6A01G176300 chr5A 87.092 736 75 15 1564 2289 157069183 157068458 0.000000e+00 815.0
15 TraesCS6A01G176300 chr5A 90.066 151 11 4 15 161 293869049 293868899 2.630000e-45 193.0
16 TraesCS6A01G176300 chr5A 83.582 67 7 4 2353 2419 637810004 637810066 2.780000e-05 60.2
17 TraesCS6A01G176300 chr4D 86.885 732 75 14 1564 2284 280861160 280860439 0.000000e+00 800.0
18 TraesCS6A01G176300 chr4D 87.742 155 19 0 1 155 380332636 380332790 5.700000e-42 182.0
19 TraesCS6A01G176300 chr3A 84.351 639 81 7 531 1167 330179933 330179312 2.200000e-170 608.0
20 TraesCS6A01G176300 chr3A 82.992 635 86 11 535 1167 626730239 626730853 2.910000e-154 555.0
21 TraesCS6A01G176300 chr3A 92.000 75 6 0 547 621 458524519 458524445 3.530000e-19 106.0
22 TraesCS6A01G176300 chr1B 84.169 638 82 11 531 1167 228103585 228102966 3.690000e-168 601.0
23 TraesCS6A01G176300 chr1B 88.889 81 8 1 531 610 533330158 533330238 5.900000e-17 99.0
24 TraesCS6A01G176300 chr7D 89.308 159 15 2 5 161 50763409 50763251 5.660000e-47 198.0
25 TraesCS6A01G176300 chr7D 88.679 159 16 2 5 161 50783338 50783180 2.630000e-45 193.0
26 TraesCS6A01G176300 chr7D 88.679 159 16 2 5 161 50950019 50949861 2.630000e-45 193.0
27 TraesCS6A01G176300 chr7D 88.679 159 16 2 5 161 50974975 50974817 2.630000e-45 193.0
28 TraesCS6A01G176300 chr7D 88.050 159 17 2 5 161 50815849 50815691 1.220000e-43 187.0
29 TraesCS6A01G176300 chr7D 91.892 74 6 0 548 621 47861216 47861289 1.270000e-18 104.0
30 TraesCS6A01G176300 chr2D 89.333 150 16 0 15 164 368559581 368559432 3.400000e-44 189.0
31 TraesCS6A01G176300 chr3B 89.474 95 10 0 531 625 795504351 795504257 1.260000e-23 121.0
32 TraesCS6A01G176300 chr3B 86.813 91 9 3 531 621 686591538 686591625 5.900000e-17 99.0
33 TraesCS6A01G176300 chr3B 88.750 80 7 2 531 609 412954607 412954685 2.120000e-16 97.1
34 TraesCS6A01G176300 chr5D 87.356 87 8 3 547 632 236034531 236034615 2.120000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G176300 chr6A 193458139 193460729 2590 True 4785.0 4785 100.0000 1 2591 1 chr6A.!!$R1 2590
1 TraesCS6A01G176300 chr6A 225655727 225657133 1406 True 1967.0 1967 91.9610 1185 2591 1 chr6A.!!$R2 1406
2 TraesCS6A01G176300 chr4A 15679782 15681189 1407 False 2001.0 2001 92.3840 1185 2591 1 chr4A.!!$F1 1406
3 TraesCS6A01G176300 chr4A 33925877 33926601 724 True 819.0 819 87.2280 1564 2289 1 chr4A.!!$R1 725
4 TraesCS6A01G176300 chr4A 675641449 675643104 1655 True 808.5 1426 88.5945 547 2310 2 chr4A.!!$R2 1763
5 TraesCS6A01G176300 chr7A 282379831 282381208 1377 True 1796.0 1796 90.1200 1185 2591 1 chr7A.!!$R1 1406
6 TraesCS6A01G176300 chr7B 392930477 392932020 1543 True 856.5 1325 85.6940 673 2309 2 chr7B.!!$R1 1636
7 TraesCS6A01G176300 chr1A 119666083 119667466 1383 False 831.5 1190 89.1605 1259 2591 2 chr1A.!!$F1 1332
8 TraesCS6A01G176300 chr5A 157068458 157069183 725 True 815.0 815 87.0920 1564 2289 1 chr5A.!!$R1 725
9 TraesCS6A01G176300 chr4D 280860439 280861160 721 True 800.0 800 86.8850 1564 2284 1 chr4D.!!$R1 720
10 TraesCS6A01G176300 chr3A 330179312 330179933 621 True 608.0 608 84.3510 531 1167 1 chr3A.!!$R1 636
11 TraesCS6A01G176300 chr3A 626730239 626730853 614 False 555.0 555 82.9920 535 1167 1 chr3A.!!$F1 632
12 TraesCS6A01G176300 chr1B 228102966 228103585 619 True 601.0 601 84.1690 531 1167 1 chr1B.!!$R1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 453 0.033503 TAGCCGGTGACCTGAGATGA 60.034 55.0 1.9 0.0 0.0 2.92 F
1025 1042 0.106519 ACAAACTTGCTCCACCTGCT 60.107 50.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1373 1.043116 CGTGATGCACCTCCTCCCTA 61.043 60.000 0.0 0.0 0.00 3.53 R
2033 2136 2.832129 TCTAGAAACAGCGGAAGTCCAT 59.168 45.455 0.0 0.0 35.14 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.619316 TCTTATTTTGTTGTTTATCATTCCACG 57.381 29.630 0.00 0.00 0.00 4.94
29 30 6.704512 ATTTTGTTGTTTATCATTCCACGC 57.295 33.333 0.00 0.00 0.00 5.34
30 31 3.463533 TGTTGTTTATCATTCCACGCG 57.536 42.857 3.53 3.53 0.00 6.01
31 32 2.809119 TGTTGTTTATCATTCCACGCGT 59.191 40.909 5.58 5.58 0.00 6.01
32 33 3.160545 GTTGTTTATCATTCCACGCGTG 58.839 45.455 31.77 31.77 0.00 5.34
33 34 1.129624 TGTTTATCATTCCACGCGTGC 59.870 47.619 33.17 15.69 0.00 5.34
34 35 1.129624 GTTTATCATTCCACGCGTGCA 59.870 47.619 33.17 18.18 0.00 4.57
35 36 1.662517 TTATCATTCCACGCGTGCAT 58.337 45.000 33.17 22.95 0.00 3.96
36 37 2.517650 TATCATTCCACGCGTGCATA 57.482 45.000 33.17 19.69 0.00 3.14
37 38 1.882912 ATCATTCCACGCGTGCATAT 58.117 45.000 33.17 20.98 0.00 1.78
38 39 0.936600 TCATTCCACGCGTGCATATG 59.063 50.000 33.17 29.14 0.00 1.78
39 40 0.936600 CATTCCACGCGTGCATATGA 59.063 50.000 33.17 21.18 0.00 2.15
40 41 1.070376 CATTCCACGCGTGCATATGAG 60.070 52.381 33.17 17.66 0.00 2.90
41 42 0.108377 TTCCACGCGTGCATATGAGT 60.108 50.000 33.17 0.00 0.00 3.41
42 43 0.108377 TCCACGCGTGCATATGAGTT 60.108 50.000 33.17 0.00 0.00 3.01
43 44 0.726827 CCACGCGTGCATATGAGTTT 59.273 50.000 33.17 0.00 0.00 2.66
44 45 1.130373 CCACGCGTGCATATGAGTTTT 59.870 47.619 33.17 0.00 0.00 2.43
45 46 2.430956 CACGCGTGCATATGAGTTTTC 58.569 47.619 28.16 0.00 0.00 2.29
46 47 1.396996 ACGCGTGCATATGAGTTTTCC 59.603 47.619 12.93 0.00 0.00 3.13
47 48 1.396648 CGCGTGCATATGAGTTTTCCA 59.603 47.619 6.97 0.00 0.00 3.53
48 49 2.785679 GCGTGCATATGAGTTTTCCAC 58.214 47.619 6.97 2.20 0.00 4.02
49 50 2.477863 GCGTGCATATGAGTTTTCCACC 60.478 50.000 6.97 0.00 0.00 4.61
50 51 2.223021 CGTGCATATGAGTTTTCCACCG 60.223 50.000 6.97 0.00 0.00 4.94
51 52 3.006940 GTGCATATGAGTTTTCCACCGA 58.993 45.455 6.97 0.00 0.00 4.69
52 53 3.438781 GTGCATATGAGTTTTCCACCGAA 59.561 43.478 6.97 0.00 0.00 4.30
53 54 4.096382 GTGCATATGAGTTTTCCACCGAAT 59.904 41.667 6.97 0.00 0.00 3.34
54 55 4.704540 TGCATATGAGTTTTCCACCGAATT 59.295 37.500 6.97 0.00 0.00 2.17
55 56 5.036737 GCATATGAGTTTTCCACCGAATTG 58.963 41.667 6.97 0.00 0.00 2.32
56 57 5.393027 GCATATGAGTTTTCCACCGAATTGT 60.393 40.000 6.97 0.00 0.00 2.71
57 58 6.183360 GCATATGAGTTTTCCACCGAATTGTA 60.183 38.462 6.97 0.00 0.00 2.41
58 59 7.468631 GCATATGAGTTTTCCACCGAATTGTAT 60.469 37.037 6.97 0.00 0.00 2.29
59 60 9.051679 CATATGAGTTTTCCACCGAATTGTATA 57.948 33.333 0.00 0.00 0.00 1.47
60 61 9.793259 ATATGAGTTTTCCACCGAATTGTATAT 57.207 29.630 0.00 0.00 0.00 0.86
61 62 7.931578 TGAGTTTTCCACCGAATTGTATATT 57.068 32.000 0.00 0.00 0.00 1.28
62 63 7.981142 TGAGTTTTCCACCGAATTGTATATTC 58.019 34.615 0.00 0.00 0.00 1.75
63 64 7.827236 TGAGTTTTCCACCGAATTGTATATTCT 59.173 33.333 0.00 0.00 0.00 2.40
64 65 9.321562 GAGTTTTCCACCGAATTGTATATTCTA 57.678 33.333 0.00 0.00 0.00 2.10
65 66 9.326413 AGTTTTCCACCGAATTGTATATTCTAG 57.674 33.333 0.00 0.00 0.00 2.43
66 67 8.557029 GTTTTCCACCGAATTGTATATTCTAGG 58.443 37.037 0.00 0.00 0.00 3.02
67 68 7.606135 TTCCACCGAATTGTATATTCTAGGA 57.394 36.000 0.00 0.00 0.00 2.94
68 69 7.792364 TCCACCGAATTGTATATTCTAGGAT 57.208 36.000 0.00 0.00 0.00 3.24
69 70 7.837863 TCCACCGAATTGTATATTCTAGGATC 58.162 38.462 0.00 0.00 0.00 3.36
70 71 7.453439 TCCACCGAATTGTATATTCTAGGATCA 59.547 37.037 0.00 0.00 0.00 2.92
71 72 8.260818 CCACCGAATTGTATATTCTAGGATCAT 58.739 37.037 0.00 0.00 0.00 2.45
72 73 9.307121 CACCGAATTGTATATTCTAGGATCATC 57.693 37.037 0.00 0.00 0.00 2.92
73 74 8.191446 ACCGAATTGTATATTCTAGGATCATCG 58.809 37.037 0.00 0.00 0.00 3.84
74 75 8.191446 CCGAATTGTATATTCTAGGATCATCGT 58.809 37.037 0.00 0.00 0.00 3.73
75 76 9.574458 CGAATTGTATATTCTAGGATCATCGTT 57.426 33.333 0.00 0.00 0.00 3.85
84 85 6.894339 TCTAGGATCATCGTTGTTATAGCA 57.106 37.500 0.00 0.00 0.00 3.49
85 86 7.468141 TCTAGGATCATCGTTGTTATAGCAT 57.532 36.000 0.00 0.00 0.00 3.79
86 87 8.575649 TCTAGGATCATCGTTGTTATAGCATA 57.424 34.615 0.00 0.00 0.00 3.14
87 88 8.678199 TCTAGGATCATCGTTGTTATAGCATAG 58.322 37.037 0.00 0.00 0.00 2.23
88 89 7.468141 AGGATCATCGTTGTTATAGCATAGA 57.532 36.000 0.00 0.00 0.00 1.98
89 90 7.896811 AGGATCATCGTTGTTATAGCATAGAA 58.103 34.615 0.00 0.00 0.00 2.10
90 91 8.535335 AGGATCATCGTTGTTATAGCATAGAAT 58.465 33.333 0.00 0.00 0.00 2.40
91 92 9.803315 GGATCATCGTTGTTATAGCATAGAATA 57.197 33.333 0.00 0.00 0.00 1.75
159 160 2.369394 CCTCTAGGGCACATTTTCACC 58.631 52.381 0.00 0.00 0.00 4.02
160 161 2.290896 CCTCTAGGGCACATTTTCACCA 60.291 50.000 0.00 0.00 0.00 4.17
161 162 3.624777 CTCTAGGGCACATTTTCACCAT 58.375 45.455 0.00 0.00 0.00 3.55
162 163 4.385199 CCTCTAGGGCACATTTTCACCATA 60.385 45.833 0.00 0.00 0.00 2.74
163 164 5.186256 TCTAGGGCACATTTTCACCATAA 57.814 39.130 0.00 0.00 0.00 1.90
164 165 5.575157 TCTAGGGCACATTTTCACCATAAA 58.425 37.500 0.00 0.00 0.00 1.40
165 166 6.194235 TCTAGGGCACATTTTCACCATAAAT 58.806 36.000 0.00 0.00 0.00 1.40
166 167 7.350382 TCTAGGGCACATTTTCACCATAAATA 58.650 34.615 0.00 0.00 0.00 1.40
167 168 8.004215 TCTAGGGCACATTTTCACCATAAATAT 58.996 33.333 0.00 0.00 0.00 1.28
168 169 7.054491 AGGGCACATTTTCACCATAAATATC 57.946 36.000 0.00 0.00 0.00 1.63
169 170 6.610830 AGGGCACATTTTCACCATAAATATCA 59.389 34.615 0.00 0.00 0.00 2.15
170 171 7.125507 AGGGCACATTTTCACCATAAATATCAA 59.874 33.333 0.00 0.00 0.00 2.57
171 172 7.933033 GGGCACATTTTCACCATAAATATCAAT 59.067 33.333 0.00 0.00 0.00 2.57
172 173 9.979578 GGCACATTTTCACCATAAATATCAATA 57.020 29.630 0.00 0.00 0.00 1.90
204 205 9.871238 TCTGAATACTTGAACTATACTTGTTCC 57.129 33.333 0.00 0.00 42.04 3.62
205 206 9.099454 CTGAATACTTGAACTATACTTGTTCCC 57.901 37.037 0.00 0.00 42.04 3.97
206 207 8.598916 TGAATACTTGAACTATACTTGTTCCCA 58.401 33.333 0.00 0.00 42.04 4.37
207 208 9.444600 GAATACTTGAACTATACTTGTTCCCAA 57.555 33.333 0.00 0.00 42.04 4.12
208 209 9.975218 AATACTTGAACTATACTTGTTCCCAAT 57.025 29.630 0.00 0.00 42.04 3.16
209 210 9.975218 ATACTTGAACTATACTTGTTCCCAATT 57.025 29.630 0.00 0.00 42.04 2.32
210 211 8.336801 ACTTGAACTATACTTGTTCCCAATTC 57.663 34.615 0.00 0.00 42.04 2.17
211 212 7.942341 ACTTGAACTATACTTGTTCCCAATTCA 59.058 33.333 0.00 0.00 42.04 2.57
212 213 8.877864 TTGAACTATACTTGTTCCCAATTCAT 57.122 30.769 0.00 0.00 42.04 2.57
213 214 9.967451 TTGAACTATACTTGTTCCCAATTCATA 57.033 29.630 0.00 0.00 42.04 2.15
214 215 9.613428 TGAACTATACTTGTTCCCAATTCATAG 57.387 33.333 0.00 0.00 42.04 2.23
215 216 8.980481 AACTATACTTGTTCCCAATTCATAGG 57.020 34.615 0.00 0.00 0.00 2.57
216 217 7.518188 ACTATACTTGTTCCCAATTCATAGGG 58.482 38.462 0.00 0.00 46.90 3.53
217 218 3.981212 ACTTGTTCCCAATTCATAGGGG 58.019 45.455 0.00 0.00 45.51 4.79
218 219 3.336694 ACTTGTTCCCAATTCATAGGGGT 59.663 43.478 0.00 0.00 45.51 4.95
219 220 4.542525 ACTTGTTCCCAATTCATAGGGGTA 59.457 41.667 0.00 0.00 45.51 3.69
220 221 5.015817 ACTTGTTCCCAATTCATAGGGGTAA 59.984 40.000 0.00 0.00 45.51 2.85
221 222 4.862371 TGTTCCCAATTCATAGGGGTAAC 58.138 43.478 0.00 0.00 45.51 2.50
222 223 4.542525 TGTTCCCAATTCATAGGGGTAACT 59.457 41.667 0.00 0.00 45.51 2.24
223 224 5.732170 TGTTCCCAATTCATAGGGGTAACTA 59.268 40.000 0.00 0.00 45.51 2.24
224 225 5.899631 TCCCAATTCATAGGGGTAACTAC 57.100 43.478 0.00 0.00 45.51 2.73
225 226 5.290335 TCCCAATTCATAGGGGTAACTACA 58.710 41.667 0.00 0.00 45.51 2.74
226 227 5.732170 TCCCAATTCATAGGGGTAACTACAA 59.268 40.000 0.00 0.00 45.51 2.41
227 228 6.217900 TCCCAATTCATAGGGGTAACTACAAA 59.782 38.462 0.00 0.00 45.51 2.83
228 229 6.546034 CCCAATTCATAGGGGTAACTACAAAG 59.454 42.308 0.00 0.00 41.58 2.77
229 230 7.116736 CCAATTCATAGGGGTAACTACAAAGT 58.883 38.462 0.00 0.00 37.65 2.66
230 231 8.269317 CCAATTCATAGGGGTAACTACAAAGTA 58.731 37.037 0.00 0.00 33.75 2.24
231 232 9.326413 CAATTCATAGGGGTAACTACAAAGTAG 57.674 37.037 2.79 2.79 33.75 2.57
232 233 8.849543 ATTCATAGGGGTAACTACAAAGTAGA 57.150 34.615 10.87 0.00 33.75 2.59
233 234 8.669055 TTCATAGGGGTAACTACAAAGTAGAA 57.331 34.615 10.87 0.00 33.75 2.10
234 235 8.302515 TCATAGGGGTAACTACAAAGTAGAAG 57.697 38.462 10.87 0.00 33.75 2.85
235 236 8.117956 TCATAGGGGTAACTACAAAGTAGAAGA 58.882 37.037 10.87 0.00 33.75 2.87
236 237 8.755977 CATAGGGGTAACTACAAAGTAGAAGAA 58.244 37.037 10.87 0.00 33.75 2.52
237 238 7.242322 AGGGGTAACTACAAAGTAGAAGAAG 57.758 40.000 10.87 0.00 33.75 2.85
238 239 7.015064 AGGGGTAACTACAAAGTAGAAGAAGA 58.985 38.462 10.87 0.00 33.75 2.87
239 240 7.511714 AGGGGTAACTACAAAGTAGAAGAAGAA 59.488 37.037 10.87 0.00 33.75 2.52
240 241 8.152898 GGGGTAACTACAAAGTAGAAGAAGAAA 58.847 37.037 10.87 0.00 33.75 2.52
241 242 9.722184 GGGTAACTACAAAGTAGAAGAAGAAAT 57.278 33.333 10.87 0.00 33.75 2.17
293 294 9.507329 AAAATAAGCTCATCTTTCACACTAGAA 57.493 29.630 0.00 0.00 36.25 2.10
294 295 9.678260 AAATAAGCTCATCTTTCACACTAGAAT 57.322 29.630 0.00 0.00 36.25 2.40
295 296 9.678260 AATAAGCTCATCTTTCACACTAGAATT 57.322 29.630 0.00 0.00 36.25 2.17
297 298 8.485976 AAGCTCATCTTTCACACTAGAATTAC 57.514 34.615 0.00 0.00 0.00 1.89
298 299 7.846066 AGCTCATCTTTCACACTAGAATTACT 58.154 34.615 0.00 0.00 0.00 2.24
299 300 8.317679 AGCTCATCTTTCACACTAGAATTACTT 58.682 33.333 0.00 0.00 0.00 2.24
300 301 8.940952 GCTCATCTTTCACACTAGAATTACTTT 58.059 33.333 0.00 0.00 0.00 2.66
302 303 9.996554 TCATCTTTCACACTAGAATTACTTTCA 57.003 29.630 0.00 0.00 36.75 2.69
304 305 8.311650 TCTTTCACACTAGAATTACTTTCAGC 57.688 34.615 0.00 0.00 36.75 4.26
305 306 8.150945 TCTTTCACACTAGAATTACTTTCAGCT 58.849 33.333 0.00 0.00 36.75 4.24
306 307 7.891183 TTCACACTAGAATTACTTTCAGCTC 57.109 36.000 0.00 0.00 36.75 4.09
307 308 6.398918 TCACACTAGAATTACTTTCAGCTCC 58.601 40.000 0.00 0.00 36.75 4.70
308 309 6.211584 TCACACTAGAATTACTTTCAGCTCCT 59.788 38.462 0.00 0.00 36.75 3.69
309 310 6.533367 CACACTAGAATTACTTTCAGCTCCTC 59.467 42.308 0.00 0.00 36.75 3.71
310 311 6.439058 ACACTAGAATTACTTTCAGCTCCTCT 59.561 38.462 0.00 0.00 36.75 3.69
311 312 6.756074 CACTAGAATTACTTTCAGCTCCTCTG 59.244 42.308 0.00 0.00 44.21 3.35
321 322 3.831323 TCAGCTCCTCTGATCTAGAAGG 58.169 50.000 0.00 0.00 46.34 3.46
322 323 3.204158 TCAGCTCCTCTGATCTAGAAGGT 59.796 47.826 7.86 0.00 46.34 3.50
323 324 3.960102 CAGCTCCTCTGATCTAGAAGGTT 59.040 47.826 7.86 0.00 45.72 3.50
324 325 3.960102 AGCTCCTCTGATCTAGAAGGTTG 59.040 47.826 7.86 4.57 34.32 3.77
325 326 3.069443 GCTCCTCTGATCTAGAAGGTTGG 59.931 52.174 7.86 3.74 34.32 3.77
326 327 4.285863 CTCCTCTGATCTAGAAGGTTGGT 58.714 47.826 7.86 0.00 34.32 3.67
327 328 4.689062 TCCTCTGATCTAGAAGGTTGGTT 58.311 43.478 7.86 0.00 34.32 3.67
328 329 4.712337 TCCTCTGATCTAGAAGGTTGGTTC 59.288 45.833 7.86 0.00 34.32 3.62
329 330 4.714308 CCTCTGATCTAGAAGGTTGGTTCT 59.286 45.833 0.00 0.00 40.07 3.01
330 331 5.894393 CCTCTGATCTAGAAGGTTGGTTCTA 59.106 44.000 0.00 0.00 37.89 2.10
331 332 6.381420 CCTCTGATCTAGAAGGTTGGTTCTAA 59.619 42.308 0.00 0.00 38.33 2.10
332 333 7.093289 CCTCTGATCTAGAAGGTTGGTTCTAAA 60.093 40.741 0.00 0.00 38.33 1.85
333 334 7.612677 TCTGATCTAGAAGGTTGGTTCTAAAC 58.387 38.462 0.00 0.00 38.33 2.01
334 335 7.455008 TCTGATCTAGAAGGTTGGTTCTAAACT 59.545 37.037 0.00 0.00 38.33 2.66
335 336 8.660295 TGATCTAGAAGGTTGGTTCTAAACTA 57.340 34.615 0.00 0.00 38.33 2.24
336 337 9.096823 TGATCTAGAAGGTTGGTTCTAAACTAA 57.903 33.333 0.00 0.00 38.33 2.24
337 338 9.939802 GATCTAGAAGGTTGGTTCTAAACTAAA 57.060 33.333 0.00 0.00 38.33 1.85
339 340 9.551734 TCTAGAAGGTTGGTTCTAAACTAAAAC 57.448 33.333 0.00 0.00 38.33 2.43
340 341 9.333724 CTAGAAGGTTGGTTCTAAACTAAAACA 57.666 33.333 0.00 0.00 38.33 2.83
341 342 8.584063 AGAAGGTTGGTTCTAAACTAAAACAA 57.416 30.769 0.00 0.00 34.90 2.83
342 343 9.197306 AGAAGGTTGGTTCTAAACTAAAACAAT 57.803 29.630 0.00 0.00 34.80 2.71
364 365 9.201989 ACAATAAACATGGACTAGTAGATCTCA 57.798 33.333 3.59 0.00 0.00 3.27
368 369 7.904558 AACATGGACTAGTAGATCTCAATGA 57.095 36.000 3.59 0.00 0.00 2.57
369 370 7.904558 ACATGGACTAGTAGATCTCAATGAA 57.095 36.000 3.59 0.00 0.00 2.57
370 371 8.489676 ACATGGACTAGTAGATCTCAATGAAT 57.510 34.615 3.59 0.00 0.00 2.57
371 372 8.366401 ACATGGACTAGTAGATCTCAATGAATG 58.634 37.037 3.59 0.00 0.00 2.67
372 373 7.904558 TGGACTAGTAGATCTCAATGAATGT 57.095 36.000 3.59 0.00 0.00 2.71
373 374 7.720442 TGGACTAGTAGATCTCAATGAATGTG 58.280 38.462 3.59 0.00 0.00 3.21
374 375 7.343057 TGGACTAGTAGATCTCAATGAATGTGT 59.657 37.037 3.59 0.00 0.00 3.72
375 376 8.200792 GGACTAGTAGATCTCAATGAATGTGTT 58.799 37.037 3.59 0.00 0.00 3.32
376 377 8.939201 ACTAGTAGATCTCAATGAATGTGTTG 57.061 34.615 3.59 0.00 0.00 3.33
377 378 8.753133 ACTAGTAGATCTCAATGAATGTGTTGA 58.247 33.333 3.59 0.00 33.63 3.18
383 384 3.753815 TCAATGAATGTGTTGAGAGGCA 58.246 40.909 0.00 0.00 31.24 4.75
384 385 3.503363 TCAATGAATGTGTTGAGAGGCAC 59.497 43.478 0.00 0.00 36.26 5.01
385 386 4.747623 TCAATGAATGTGTTGAGAGGCACT 60.748 41.667 0.00 0.00 36.63 4.40
386 387 2.497138 TGAATGTGTTGAGAGGCACTG 58.503 47.619 0.00 0.00 41.55 3.66
387 388 2.104622 TGAATGTGTTGAGAGGCACTGA 59.895 45.455 0.00 0.00 41.55 3.41
388 389 2.469274 ATGTGTTGAGAGGCACTGAG 57.531 50.000 0.00 0.00 41.55 3.35
389 390 0.394192 TGTGTTGAGAGGCACTGAGG 59.606 55.000 0.00 0.00 41.55 3.86
390 391 0.952984 GTGTTGAGAGGCACTGAGGC 60.953 60.000 0.00 0.00 41.55 4.70
401 402 4.959596 GGCACTGAGGCATATATCAATG 57.040 45.455 0.00 0.00 43.51 2.82
402 403 4.582869 GGCACTGAGGCATATATCAATGA 58.417 43.478 0.00 0.00 43.51 2.57
403 404 4.634883 GGCACTGAGGCATATATCAATGAG 59.365 45.833 0.00 0.00 43.51 2.90
404 405 5.485620 GCACTGAGGCATATATCAATGAGA 58.514 41.667 0.00 0.00 0.00 3.27
405 406 5.581479 GCACTGAGGCATATATCAATGAGAG 59.419 44.000 0.00 0.00 0.00 3.20
406 407 5.581479 CACTGAGGCATATATCAATGAGAGC 59.419 44.000 0.00 0.00 0.00 4.09
407 408 5.247792 ACTGAGGCATATATCAATGAGAGCA 59.752 40.000 0.00 0.00 0.00 4.26
408 409 6.070136 ACTGAGGCATATATCAATGAGAGCAT 60.070 38.462 0.00 0.00 35.92 3.79
409 410 7.125356 ACTGAGGCATATATCAATGAGAGCATA 59.875 37.037 0.00 0.00 33.44 3.14
410 411 7.854337 TGAGGCATATATCAATGAGAGCATAA 58.146 34.615 0.00 0.00 33.44 1.90
411 412 8.323567 TGAGGCATATATCAATGAGAGCATAAA 58.676 33.333 0.00 0.00 33.44 1.40
412 413 9.170734 GAGGCATATATCAATGAGAGCATAAAA 57.829 33.333 0.00 0.00 33.44 1.52
413 414 9.696572 AGGCATATATCAATGAGAGCATAAAAT 57.303 29.630 0.00 0.00 33.44 1.82
438 439 7.730364 AATATGTACCTTCAAGATTTAGCCG 57.270 36.000 0.00 0.00 0.00 5.52
439 440 3.869065 TGTACCTTCAAGATTTAGCCGG 58.131 45.455 0.00 0.00 0.00 6.13
440 441 3.262405 TGTACCTTCAAGATTTAGCCGGT 59.738 43.478 1.90 0.00 0.00 5.28
441 442 2.711542 ACCTTCAAGATTTAGCCGGTG 58.288 47.619 1.90 0.00 0.00 4.94
442 443 2.304761 ACCTTCAAGATTTAGCCGGTGA 59.695 45.455 1.90 0.00 0.00 4.02
443 444 2.678336 CCTTCAAGATTTAGCCGGTGAC 59.322 50.000 1.90 0.00 0.00 3.67
444 445 2.396590 TCAAGATTTAGCCGGTGACC 57.603 50.000 1.90 0.00 0.00 4.02
445 446 1.906574 TCAAGATTTAGCCGGTGACCT 59.093 47.619 1.90 0.00 0.00 3.85
446 447 2.009774 CAAGATTTAGCCGGTGACCTG 58.990 52.381 1.90 0.00 0.00 4.00
447 448 1.568504 AGATTTAGCCGGTGACCTGA 58.431 50.000 1.90 0.00 0.00 3.86
448 449 1.482593 AGATTTAGCCGGTGACCTGAG 59.517 52.381 1.90 0.00 0.00 3.35
449 450 1.480954 GATTTAGCCGGTGACCTGAGA 59.519 52.381 1.90 0.00 0.00 3.27
450 451 1.568504 TTTAGCCGGTGACCTGAGAT 58.431 50.000 1.90 0.00 0.00 2.75
451 452 0.824109 TTAGCCGGTGACCTGAGATG 59.176 55.000 1.90 0.00 0.00 2.90
452 453 0.033503 TAGCCGGTGACCTGAGATGA 60.034 55.000 1.90 0.00 0.00 2.92
453 454 0.689080 AGCCGGTGACCTGAGATGAT 60.689 55.000 1.90 0.00 0.00 2.45
454 455 0.179000 GCCGGTGACCTGAGATGATT 59.821 55.000 1.90 0.00 0.00 2.57
455 456 1.407437 GCCGGTGACCTGAGATGATTT 60.407 52.381 1.90 0.00 0.00 2.17
456 457 2.941415 GCCGGTGACCTGAGATGATTTT 60.941 50.000 1.90 0.00 0.00 1.82
457 458 2.939103 CCGGTGACCTGAGATGATTTTC 59.061 50.000 0.00 0.00 0.00 2.29
458 459 3.599343 CGGTGACCTGAGATGATTTTCA 58.401 45.455 0.00 0.00 0.00 2.69
459 460 4.002982 CGGTGACCTGAGATGATTTTCAA 58.997 43.478 0.00 0.00 0.00 2.69
460 461 4.455533 CGGTGACCTGAGATGATTTTCAAA 59.544 41.667 0.00 0.00 0.00 2.69
461 462 5.048782 CGGTGACCTGAGATGATTTTCAAAA 60.049 40.000 0.00 0.00 0.00 2.44
462 463 6.385033 GGTGACCTGAGATGATTTTCAAAAG 58.615 40.000 0.00 0.00 0.00 2.27
463 464 6.207417 GGTGACCTGAGATGATTTTCAAAAGA 59.793 38.462 0.00 0.00 0.00 2.52
464 465 7.255590 GGTGACCTGAGATGATTTTCAAAAGAA 60.256 37.037 0.00 0.00 0.00 2.52
465 466 8.137437 GTGACCTGAGATGATTTTCAAAAGAAA 58.863 33.333 0.00 0.00 0.00 2.52
466 467 8.694540 TGACCTGAGATGATTTTCAAAAGAAAA 58.305 29.630 5.93 5.93 38.26 2.29
467 468 9.702494 GACCTGAGATGATTTTCAAAAGAAAAT 57.298 29.630 14.07 14.07 44.54 1.82
468 469 9.485206 ACCTGAGATGATTTTCAAAAGAAAATG 57.515 29.630 17.83 6.44 42.68 2.32
469 470 9.485206 CCTGAGATGATTTTCAAAAGAAAATGT 57.515 29.630 17.83 8.66 42.68 2.71
476 477 9.434420 TGATTTTCAAAAGAAAATGTGAGTTGT 57.566 25.926 17.83 0.00 42.68 3.32
479 480 8.600449 TTTCAAAAGAAAATGTGAGTTGTTGT 57.400 26.923 0.00 0.00 0.00 3.32
480 481 7.810766 TCAAAAGAAAATGTGAGTTGTTGTC 57.189 32.000 0.00 0.00 0.00 3.18
481 482 7.601856 TCAAAAGAAAATGTGAGTTGTTGTCT 58.398 30.769 0.00 0.00 0.00 3.41
482 483 7.754924 TCAAAAGAAAATGTGAGTTGTTGTCTC 59.245 33.333 0.00 0.00 0.00 3.36
483 484 7.396540 AAAGAAAATGTGAGTTGTTGTCTCT 57.603 32.000 0.00 0.00 33.59 3.10
484 485 8.506168 AAAGAAAATGTGAGTTGTTGTCTCTA 57.494 30.769 0.00 0.00 33.59 2.43
485 486 7.721286 AGAAAATGTGAGTTGTTGTCTCTAG 57.279 36.000 0.00 0.00 33.59 2.43
486 487 6.708054 AGAAAATGTGAGTTGTTGTCTCTAGG 59.292 38.462 0.00 0.00 33.59 3.02
487 488 5.808366 AATGTGAGTTGTTGTCTCTAGGA 57.192 39.130 0.00 0.00 33.59 2.94
488 489 4.585955 TGTGAGTTGTTGTCTCTAGGAC 57.414 45.455 4.84 4.84 44.70 3.85
489 490 4.215908 TGTGAGTTGTTGTCTCTAGGACT 58.784 43.478 11.21 0.00 44.74 3.85
490 491 4.278669 TGTGAGTTGTTGTCTCTAGGACTC 59.721 45.833 11.21 0.00 44.74 3.36
491 492 4.278669 GTGAGTTGTTGTCTCTAGGACTCA 59.721 45.833 11.21 0.00 44.74 3.41
492 493 4.278669 TGAGTTGTTGTCTCTAGGACTCAC 59.721 45.833 11.21 8.90 44.74 3.51
493 494 3.574826 AGTTGTTGTCTCTAGGACTCACC 59.425 47.826 11.21 0.00 44.74 4.02
494 495 2.526432 TGTTGTCTCTAGGACTCACCC 58.474 52.381 11.21 0.00 44.74 4.61
495 496 2.158370 TGTTGTCTCTAGGACTCACCCA 60.158 50.000 11.21 1.48 44.74 4.51
496 497 2.897969 GTTGTCTCTAGGACTCACCCAA 59.102 50.000 11.21 0.00 44.74 4.12
497 498 3.254093 TGTCTCTAGGACTCACCCAAA 57.746 47.619 11.21 0.00 44.74 3.28
498 499 3.583228 TGTCTCTAGGACTCACCCAAAA 58.417 45.455 11.21 0.00 44.74 2.44
499 500 4.168101 TGTCTCTAGGACTCACCCAAAAT 58.832 43.478 11.21 0.00 44.74 1.82
500 501 4.020218 TGTCTCTAGGACTCACCCAAAATG 60.020 45.833 11.21 0.00 44.74 2.32
501 502 4.020128 GTCTCTAGGACTCACCCAAAATGT 60.020 45.833 4.62 0.00 41.46 2.71
502 503 4.020218 TCTCTAGGACTCACCCAAAATGTG 60.020 45.833 0.00 0.00 40.05 3.21
503 504 3.907474 TCTAGGACTCACCCAAAATGTGA 59.093 43.478 0.00 0.00 40.28 3.58
510 511 4.383850 TCACCCAAAATGTGAGTTGTTG 57.616 40.909 0.00 0.00 37.80 3.33
511 512 3.766591 TCACCCAAAATGTGAGTTGTTGT 59.233 39.130 0.00 0.00 37.80 3.32
512 513 4.950475 TCACCCAAAATGTGAGTTGTTGTA 59.050 37.500 0.00 0.00 37.80 2.41
513 514 5.596361 TCACCCAAAATGTGAGTTGTTGTAT 59.404 36.000 0.00 0.00 37.80 2.29
514 515 5.920273 CACCCAAAATGTGAGTTGTTGTATC 59.080 40.000 0.00 0.00 35.74 2.24
515 516 5.833131 ACCCAAAATGTGAGTTGTTGTATCT 59.167 36.000 0.00 0.00 0.00 1.98
516 517 7.001674 ACCCAAAATGTGAGTTGTTGTATCTA 58.998 34.615 0.00 0.00 0.00 1.98
517 518 7.669722 ACCCAAAATGTGAGTTGTTGTATCTAT 59.330 33.333 0.00 0.00 0.00 1.98
518 519 8.522830 CCCAAAATGTGAGTTGTTGTATCTATT 58.477 33.333 0.00 0.00 0.00 1.73
519 520 9.345517 CCAAAATGTGAGTTGTTGTATCTATTG 57.654 33.333 0.00 0.00 0.00 1.90
520 521 8.853345 CAAAATGTGAGTTGTTGTATCTATTGC 58.147 33.333 0.00 0.00 0.00 3.56
521 522 7.686438 AATGTGAGTTGTTGTATCTATTGCA 57.314 32.000 0.00 0.00 0.00 4.08
522 523 7.686438 ATGTGAGTTGTTGTATCTATTGCAA 57.314 32.000 0.00 0.00 0.00 4.08
523 524 7.132694 TGTGAGTTGTTGTATCTATTGCAAG 57.867 36.000 4.94 0.00 0.00 4.01
524 525 6.934083 TGTGAGTTGTTGTATCTATTGCAAGA 59.066 34.615 4.94 0.00 0.00 3.02
525 526 7.443879 TGTGAGTTGTTGTATCTATTGCAAGAA 59.556 33.333 4.94 0.00 0.00 2.52
526 527 8.289618 GTGAGTTGTTGTATCTATTGCAAGAAA 58.710 33.333 4.94 0.00 29.46 2.52
527 528 8.289618 TGAGTTGTTGTATCTATTGCAAGAAAC 58.710 33.333 4.94 1.89 29.46 2.78
528 529 8.165239 AGTTGTTGTATCTATTGCAAGAAACA 57.835 30.769 4.94 4.72 29.46 2.83
529 530 8.796475 AGTTGTTGTATCTATTGCAAGAAACAT 58.204 29.630 4.94 0.00 28.84 2.71
591 592 9.825109 TCATAATAACTATTTGGATCACGTCAA 57.175 29.630 0.00 0.00 0.00 3.18
621 623 1.342672 GGCCCGATTAGGTTCTCCCA 61.343 60.000 0.00 0.00 38.74 4.37
640 642 0.685097 AAACTCCCGAGCTGCTACAA 59.315 50.000 0.15 0.00 0.00 2.41
647 649 1.732259 CCGAGCTGCTACAAAACGAAT 59.268 47.619 0.15 0.00 0.00 3.34
671 676 1.268992 CCCACCTACCCACCATCGAA 61.269 60.000 0.00 0.00 0.00 3.71
722 727 2.969238 CCATCACCGATCTGGCGC 60.969 66.667 0.00 0.00 43.94 6.53
723 728 2.969238 CATCACCGATCTGGCGCC 60.969 66.667 22.73 22.73 43.94 6.53
724 729 4.592192 ATCACCGATCTGGCGCCG 62.592 66.667 23.90 16.91 43.94 6.46
754 769 3.650950 GGGCAGGAAGCTCCACCA 61.651 66.667 12.85 0.00 44.79 4.17
855 872 4.379243 CCGCCAGCACCGTCTCTT 62.379 66.667 0.00 0.00 0.00 2.85
899 916 3.655211 CCCTTGCCCCTCACTGCT 61.655 66.667 0.00 0.00 0.00 4.24
900 917 2.360852 CCTTGCCCCTCACTGCTG 60.361 66.667 0.00 0.00 0.00 4.41
909 926 4.662961 TCACTGCTGCCACCGTCG 62.663 66.667 0.00 0.00 0.00 5.12
978 995 4.016706 CCGCCAAGTCCGTCCCTT 62.017 66.667 0.00 0.00 0.00 3.95
984 1001 4.974438 AGTCCGTCCCTTGCCCCA 62.974 66.667 0.00 0.00 0.00 4.96
992 1009 2.311854 CCCTTGCCCCAGATCAGGT 61.312 63.158 3.16 0.00 0.00 4.00
1008 1025 1.278985 CAGGTTACCTCCATGAGCACA 59.721 52.381 0.00 0.00 0.00 4.57
1025 1042 0.106519 ACAAACTTGCTCCACCTGCT 60.107 50.000 0.00 0.00 0.00 4.24
1047 1064 1.371558 GCGACCTTCCTCCAACTGT 59.628 57.895 0.00 0.00 0.00 3.55
1111 1128 2.117423 CCCCCACAACCTCCAACC 59.883 66.667 0.00 0.00 0.00 3.77
1157 1174 1.118965 TCTGTGCTTCTTCCCCGACA 61.119 55.000 0.00 0.00 0.00 4.35
1167 1184 2.796483 TTCCCCGACATCGCAACCAG 62.796 60.000 0.00 0.00 38.18 4.00
1168 1185 2.819595 CCCGACATCGCAACCAGG 60.820 66.667 0.00 0.00 38.18 4.45
1169 1186 2.819595 CCGACATCGCAACCAGGG 60.820 66.667 0.00 0.00 38.18 4.45
1170 1187 3.499737 CGACATCGCAACCAGGGC 61.500 66.667 0.00 0.00 0.00 5.19
1171 1188 2.359850 GACATCGCAACCAGGGCA 60.360 61.111 0.00 0.00 0.00 5.36
1172 1189 2.672996 ACATCGCAACCAGGGCAC 60.673 61.111 0.00 0.00 0.00 5.01
1192 1209 4.901511 ACCCACCGGTTCCTATCA 57.098 55.556 2.97 0.00 40.58 2.15
1253 1270 1.617850 GCATCCAAACATGTCCAACCA 59.382 47.619 0.00 0.00 0.00 3.67
1351 1368 1.610673 GAGACAGGGGTGGAGCTCA 60.611 63.158 17.19 0.00 0.00 4.26
1356 1373 2.284995 GGGGTGGAGCTCAGGACT 60.285 66.667 17.19 0.00 0.00 3.85
1396 1414 0.107831 TGGCGCTGTAAGAAGGTTGT 59.892 50.000 7.64 0.00 34.07 3.32
1452 1472 3.658709 TGTACTCAAATGTGTCGATGCA 58.341 40.909 0.00 0.00 0.00 3.96
1467 1487 3.622612 TCGATGCATTTCTGTGTGTATGG 59.377 43.478 0.00 0.00 0.00 2.74
1469 1489 4.274214 CGATGCATTTCTGTGTGTATGGAT 59.726 41.667 0.00 0.00 32.70 3.41
1537 1557 7.972277 AGAATTTGTAATGCATGATGACTGTTC 59.028 33.333 0.00 0.00 0.00 3.18
1598 1619 2.276201 TGGTGTTGTGTGACGAAGAAG 58.724 47.619 0.00 0.00 0.00 2.85
1661 1752 9.440761 GAGATATATATGATAGGGGTTCAAGGT 57.559 37.037 0.00 0.00 0.00 3.50
1684 1775 6.307155 GTGATGTTGTATGGCGCTAATTATC 58.693 40.000 7.64 2.38 0.00 1.75
1685 1776 6.147821 GTGATGTTGTATGGCGCTAATTATCT 59.852 38.462 7.64 0.00 0.00 1.98
1763 1860 8.230486 GGAACCATGAATCGATTATATGTTCAC 58.770 37.037 26.81 18.94 32.30 3.18
1974 2075 9.829507 ACACTAGAATTTCTCTCCATTGATAAG 57.170 33.333 1.27 0.00 35.41 1.73
2188 2294 6.255596 GGATTTTCTCCGCTTAAAAAGTCT 57.744 37.500 0.00 0.00 33.29 3.24
2342 2453 4.830600 TCAATGTTTAAAACCCCCTCAGAC 59.169 41.667 0.00 0.00 0.00 3.51
2361 2472 8.030106 CCTCAGACTTTCGTTCTTACTAAAGAT 58.970 37.037 8.65 0.00 41.36 2.40
2416 2528 8.312896 TGCAGTAGTTTGATGTATACGAAAAA 57.687 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.619316 CGTGGAATGATAAACAACAAAATAAGA 57.381 29.630 0.00 0.00 0.00 2.10
3 4 8.372521 GCGTGGAATGATAAACAACAAAATAAG 58.627 33.333 0.00 0.00 0.00 1.73
4 5 7.061210 CGCGTGGAATGATAAACAACAAAATAA 59.939 33.333 0.00 0.00 0.00 1.40
5 6 6.524933 CGCGTGGAATGATAAACAACAAAATA 59.475 34.615 0.00 0.00 0.00 1.40
6 7 5.344665 CGCGTGGAATGATAAACAACAAAAT 59.655 36.000 0.00 0.00 0.00 1.82
7 8 4.677378 CGCGTGGAATGATAAACAACAAAA 59.323 37.500 0.00 0.00 0.00 2.44
8 9 4.222886 CGCGTGGAATGATAAACAACAAA 58.777 39.130 0.00 0.00 0.00 2.83
9 10 3.251245 ACGCGTGGAATGATAAACAACAA 59.749 39.130 12.93 0.00 0.00 2.83
10 11 2.809119 ACGCGTGGAATGATAAACAACA 59.191 40.909 12.93 0.00 0.00 3.33
11 12 3.160545 CACGCGTGGAATGATAAACAAC 58.839 45.455 31.15 0.00 0.00 3.32
12 13 2.413502 GCACGCGTGGAATGATAAACAA 60.414 45.455 37.47 0.00 0.00 2.83
13 14 1.129624 GCACGCGTGGAATGATAAACA 59.870 47.619 37.47 0.00 0.00 2.83
14 15 1.129624 TGCACGCGTGGAATGATAAAC 59.870 47.619 37.47 18.62 0.00 2.01
15 16 1.443802 TGCACGCGTGGAATGATAAA 58.556 45.000 37.47 0.00 0.00 1.40
16 17 1.662517 ATGCACGCGTGGAATGATAA 58.337 45.000 36.42 2.20 33.77 1.75
17 18 2.517650 TATGCACGCGTGGAATGATA 57.482 45.000 36.42 21.41 33.77 2.15
18 19 1.532437 CATATGCACGCGTGGAATGAT 59.468 47.619 36.42 25.17 33.77 2.45
19 20 0.936600 CATATGCACGCGTGGAATGA 59.063 50.000 36.42 24.13 33.77 2.57
20 21 0.936600 TCATATGCACGCGTGGAATG 59.063 50.000 36.42 32.71 33.77 2.67
21 22 1.220529 CTCATATGCACGCGTGGAAT 58.779 50.000 36.42 25.51 33.77 3.01
22 23 0.108377 ACTCATATGCACGCGTGGAA 60.108 50.000 36.42 24.52 33.77 3.53
23 24 0.108377 AACTCATATGCACGCGTGGA 60.108 50.000 37.47 36.34 34.81 4.02
24 25 0.726827 AAACTCATATGCACGCGTGG 59.273 50.000 37.47 21.99 0.00 4.94
25 26 2.430956 GAAAACTCATATGCACGCGTG 58.569 47.619 34.01 34.01 0.00 5.34
26 27 1.396996 GGAAAACTCATATGCACGCGT 59.603 47.619 5.58 5.58 0.00 6.01
27 28 1.396648 TGGAAAACTCATATGCACGCG 59.603 47.619 3.53 3.53 0.00 6.01
28 29 2.477863 GGTGGAAAACTCATATGCACGC 60.478 50.000 0.00 0.00 36.41 5.34
29 30 2.223021 CGGTGGAAAACTCATATGCACG 60.223 50.000 0.00 0.00 36.41 5.34
30 31 3.006940 TCGGTGGAAAACTCATATGCAC 58.993 45.455 0.00 0.00 35.02 4.57
31 32 3.342377 TCGGTGGAAAACTCATATGCA 57.658 42.857 0.00 0.00 0.00 3.96
32 33 4.900635 ATTCGGTGGAAAACTCATATGC 57.099 40.909 0.00 0.00 35.40 3.14
33 34 6.194796 ACAATTCGGTGGAAAACTCATATG 57.805 37.500 0.00 0.00 35.40 1.78
34 35 9.793259 ATATACAATTCGGTGGAAAACTCATAT 57.207 29.630 0.00 0.00 35.40 1.78
35 36 9.621629 AATATACAATTCGGTGGAAAACTCATA 57.378 29.630 0.00 0.00 35.40 2.15
36 37 8.519799 AATATACAATTCGGTGGAAAACTCAT 57.480 30.769 0.00 0.00 35.40 2.90
37 38 7.827236 AGAATATACAATTCGGTGGAAAACTCA 59.173 33.333 0.00 0.00 35.40 3.41
38 39 8.209917 AGAATATACAATTCGGTGGAAAACTC 57.790 34.615 0.00 0.00 35.40 3.01
39 40 9.326413 CTAGAATATACAATTCGGTGGAAAACT 57.674 33.333 0.00 0.00 35.40 2.66
40 41 8.557029 CCTAGAATATACAATTCGGTGGAAAAC 58.443 37.037 0.00 0.00 35.40 2.43
41 42 8.487848 TCCTAGAATATACAATTCGGTGGAAAA 58.512 33.333 0.00 0.00 35.40 2.29
42 43 8.025270 TCCTAGAATATACAATTCGGTGGAAA 57.975 34.615 0.00 0.00 35.40 3.13
43 44 7.606135 TCCTAGAATATACAATTCGGTGGAA 57.394 36.000 0.00 0.00 36.41 3.53
44 45 7.453439 TGATCCTAGAATATACAATTCGGTGGA 59.547 37.037 0.00 9.82 33.72 4.02
45 46 7.611770 TGATCCTAGAATATACAATTCGGTGG 58.388 38.462 0.00 0.00 33.51 4.61
46 47 9.307121 GATGATCCTAGAATATACAATTCGGTG 57.693 37.037 0.00 0.00 33.51 4.94
47 48 8.191446 CGATGATCCTAGAATATACAATTCGGT 58.809 37.037 0.00 0.00 33.51 4.69
48 49 8.191446 ACGATGATCCTAGAATATACAATTCGG 58.809 37.037 0.00 0.00 33.51 4.30
49 50 9.574458 AACGATGATCCTAGAATATACAATTCG 57.426 33.333 0.00 0.00 33.51 3.34
58 59 9.020731 TGCTATAACAACGATGATCCTAGAATA 57.979 33.333 0.00 0.00 0.00 1.75
59 60 7.896811 TGCTATAACAACGATGATCCTAGAAT 58.103 34.615 0.00 0.00 0.00 2.40
60 61 7.284919 TGCTATAACAACGATGATCCTAGAA 57.715 36.000 0.00 0.00 0.00 2.10
61 62 6.894339 TGCTATAACAACGATGATCCTAGA 57.106 37.500 0.00 0.00 0.00 2.43
62 63 8.678199 TCTATGCTATAACAACGATGATCCTAG 58.322 37.037 0.00 0.00 0.00 3.02
63 64 8.575649 TCTATGCTATAACAACGATGATCCTA 57.424 34.615 0.00 0.00 0.00 2.94
64 65 7.468141 TCTATGCTATAACAACGATGATCCT 57.532 36.000 0.00 0.00 0.00 3.24
65 66 8.709386 ATTCTATGCTATAACAACGATGATCC 57.291 34.615 0.00 0.00 0.00 3.36
139 140 2.290896 TGGTGAAAATGTGCCCTAGAGG 60.291 50.000 0.00 0.00 39.47 3.69
140 141 3.071874 TGGTGAAAATGTGCCCTAGAG 57.928 47.619 0.00 0.00 0.00 2.43
141 142 3.737559 ATGGTGAAAATGTGCCCTAGA 57.262 42.857 0.00 0.00 0.00 2.43
142 143 5.913137 TTTATGGTGAAAATGTGCCCTAG 57.087 39.130 0.00 0.00 0.00 3.02
143 144 7.782168 TGATATTTATGGTGAAAATGTGCCCTA 59.218 33.333 0.00 0.00 0.00 3.53
144 145 6.610830 TGATATTTATGGTGAAAATGTGCCCT 59.389 34.615 0.00 0.00 0.00 5.19
145 146 6.815089 TGATATTTATGGTGAAAATGTGCCC 58.185 36.000 0.00 0.00 0.00 5.36
146 147 8.891671 ATTGATATTTATGGTGAAAATGTGCC 57.108 30.769 0.00 0.00 0.00 5.01
178 179 9.871238 GGAACAAGTATAGTTCAAGTATTCAGA 57.129 33.333 8.15 0.00 45.45 3.27
179 180 9.099454 GGGAACAAGTATAGTTCAAGTATTCAG 57.901 37.037 8.15 0.00 45.45 3.02
180 181 8.598916 TGGGAACAAGTATAGTTCAAGTATTCA 58.401 33.333 8.15 0.00 45.45 2.57
199 200 4.542525 AGTTACCCCTATGAATTGGGAACA 59.457 41.667 10.96 0.00 44.34 3.18
200 201 5.125367 AGTTACCCCTATGAATTGGGAAC 57.875 43.478 10.96 8.35 44.34 3.62
201 202 5.732170 TGTAGTTACCCCTATGAATTGGGAA 59.268 40.000 10.96 0.00 44.34 3.97
202 203 5.290335 TGTAGTTACCCCTATGAATTGGGA 58.710 41.667 10.96 0.00 44.34 4.37
203 204 5.640158 TGTAGTTACCCCTATGAATTGGG 57.360 43.478 3.07 3.07 45.34 4.12
204 205 7.116736 ACTTTGTAGTTACCCCTATGAATTGG 58.883 38.462 0.00 0.00 0.00 3.16
205 206 9.326413 CTACTTTGTAGTTACCCCTATGAATTG 57.674 37.037 0.00 0.00 35.78 2.32
206 207 9.275572 TCTACTTTGTAGTTACCCCTATGAATT 57.724 33.333 4.89 0.00 35.78 2.17
207 208 8.849543 TCTACTTTGTAGTTACCCCTATGAAT 57.150 34.615 4.89 0.00 35.78 2.57
208 209 8.669055 TTCTACTTTGTAGTTACCCCTATGAA 57.331 34.615 4.89 0.00 35.78 2.57
209 210 8.117956 TCTTCTACTTTGTAGTTACCCCTATGA 58.882 37.037 4.89 0.00 35.78 2.15
210 211 8.302515 TCTTCTACTTTGTAGTTACCCCTATG 57.697 38.462 4.89 0.00 35.78 2.23
211 212 8.906238 TTCTTCTACTTTGTAGTTACCCCTAT 57.094 34.615 4.89 0.00 35.78 2.57
212 213 8.172741 TCTTCTTCTACTTTGTAGTTACCCCTA 58.827 37.037 4.89 0.00 35.78 3.53
213 214 7.015064 TCTTCTTCTACTTTGTAGTTACCCCT 58.985 38.462 4.89 0.00 35.78 4.79
214 215 7.237209 TCTTCTTCTACTTTGTAGTTACCCC 57.763 40.000 4.89 0.00 35.78 4.95
215 216 9.722184 ATTTCTTCTTCTACTTTGTAGTTACCC 57.278 33.333 4.89 0.00 35.78 3.69
267 268 9.507329 TTCTAGTGTGAAAGATGAGCTTATTTT 57.493 29.630 0.00 0.00 35.24 1.82
268 269 9.678260 ATTCTAGTGTGAAAGATGAGCTTATTT 57.322 29.630 0.00 0.00 35.24 1.40
269 270 9.678260 AATTCTAGTGTGAAAGATGAGCTTATT 57.322 29.630 0.00 0.00 35.24 1.40
271 272 9.587772 GTAATTCTAGTGTGAAAGATGAGCTTA 57.412 33.333 0.00 0.00 35.24 3.09
272 273 8.317679 AGTAATTCTAGTGTGAAAGATGAGCTT 58.682 33.333 0.00 0.00 38.88 3.74
273 274 7.846066 AGTAATTCTAGTGTGAAAGATGAGCT 58.154 34.615 0.00 0.00 0.00 4.09
274 275 8.485976 AAGTAATTCTAGTGTGAAAGATGAGC 57.514 34.615 0.00 0.00 0.00 4.26
276 277 9.996554 TGAAAGTAATTCTAGTGTGAAAGATGA 57.003 29.630 0.00 0.00 38.92 2.92
278 279 8.940952 GCTGAAAGTAATTCTAGTGTGAAAGAT 58.059 33.333 0.00 0.00 38.92 2.40
279 280 8.150945 AGCTGAAAGTAATTCTAGTGTGAAAGA 58.849 33.333 0.00 0.00 38.92 2.52
280 281 8.316640 AGCTGAAAGTAATTCTAGTGTGAAAG 57.683 34.615 0.00 0.00 38.92 2.62
281 282 7.387948 GGAGCTGAAAGTAATTCTAGTGTGAAA 59.612 37.037 0.00 0.00 38.92 2.69
282 283 6.874134 GGAGCTGAAAGTAATTCTAGTGTGAA 59.126 38.462 0.00 0.00 38.92 3.18
283 284 6.211584 AGGAGCTGAAAGTAATTCTAGTGTGA 59.788 38.462 0.00 0.00 38.92 3.58
284 285 6.402222 AGGAGCTGAAAGTAATTCTAGTGTG 58.598 40.000 0.00 0.00 38.92 3.82
285 286 6.439058 AGAGGAGCTGAAAGTAATTCTAGTGT 59.561 38.462 0.00 0.00 38.92 3.55
286 287 6.872920 AGAGGAGCTGAAAGTAATTCTAGTG 58.127 40.000 0.00 0.00 38.92 2.74
301 302 3.565307 ACCTTCTAGATCAGAGGAGCTG 58.435 50.000 14.02 0.00 40.65 4.24
302 303 3.960102 CAACCTTCTAGATCAGAGGAGCT 59.040 47.826 14.02 0.00 43.43 4.09
303 304 3.069443 CCAACCTTCTAGATCAGAGGAGC 59.931 52.174 14.02 0.00 32.06 4.70
304 305 4.285863 ACCAACCTTCTAGATCAGAGGAG 58.714 47.826 14.02 6.77 32.06 3.69
305 306 4.338795 ACCAACCTTCTAGATCAGAGGA 57.661 45.455 14.02 0.00 32.06 3.71
306 307 4.714308 AGAACCAACCTTCTAGATCAGAGG 59.286 45.833 6.65 6.65 33.83 3.69
307 308 5.930837 AGAACCAACCTTCTAGATCAGAG 57.069 43.478 0.00 0.00 33.83 3.35
308 309 7.455008 AGTTTAGAACCAACCTTCTAGATCAGA 59.545 37.037 0.00 0.00 34.83 3.27
309 310 7.616313 AGTTTAGAACCAACCTTCTAGATCAG 58.384 38.462 0.00 0.00 34.83 2.90
310 311 7.554959 AGTTTAGAACCAACCTTCTAGATCA 57.445 36.000 0.00 0.00 34.83 2.92
311 312 9.939802 TTTAGTTTAGAACCAACCTTCTAGATC 57.060 33.333 0.00 0.00 34.83 2.75
313 314 9.551734 GTTTTAGTTTAGAACCAACCTTCTAGA 57.448 33.333 0.00 0.00 34.83 2.43
314 315 9.333724 TGTTTTAGTTTAGAACCAACCTTCTAG 57.666 33.333 0.00 0.00 34.83 2.43
315 316 9.683870 TTGTTTTAGTTTAGAACCAACCTTCTA 57.316 29.630 0.00 0.00 32.54 2.10
316 317 8.584063 TTGTTTTAGTTTAGAACCAACCTTCT 57.416 30.769 0.00 0.00 34.72 2.85
338 339 9.201989 TGAGATCTACTAGTCCATGTTTATTGT 57.798 33.333 0.00 0.00 0.00 2.71
342 343 9.421399 TCATTGAGATCTACTAGTCCATGTTTA 57.579 33.333 0.00 0.00 0.00 2.01
343 344 8.311395 TCATTGAGATCTACTAGTCCATGTTT 57.689 34.615 0.00 0.00 0.00 2.83
344 345 7.904558 TCATTGAGATCTACTAGTCCATGTT 57.095 36.000 0.00 0.00 0.00 2.71
345 346 7.904558 TTCATTGAGATCTACTAGTCCATGT 57.095 36.000 0.00 0.00 0.00 3.21
346 347 8.366401 ACATTCATTGAGATCTACTAGTCCATG 58.634 37.037 0.00 0.00 0.00 3.66
347 348 8.366401 CACATTCATTGAGATCTACTAGTCCAT 58.634 37.037 0.00 0.00 0.00 3.41
348 349 7.343057 ACACATTCATTGAGATCTACTAGTCCA 59.657 37.037 0.00 0.00 0.00 4.02
349 350 7.721402 ACACATTCATTGAGATCTACTAGTCC 58.279 38.462 0.00 0.00 0.00 3.85
350 351 9.029243 CAACACATTCATTGAGATCTACTAGTC 57.971 37.037 0.00 0.00 0.00 2.59
351 352 8.753133 TCAACACATTCATTGAGATCTACTAGT 58.247 33.333 0.00 0.00 31.29 2.57
362 363 3.503363 GTGCCTCTCAACACATTCATTGA 59.497 43.478 0.00 0.00 36.77 2.57
363 364 3.504906 AGTGCCTCTCAACACATTCATTG 59.495 43.478 0.00 0.00 39.30 2.82
364 365 3.504906 CAGTGCCTCTCAACACATTCATT 59.495 43.478 0.00 0.00 39.30 2.57
365 366 3.079578 CAGTGCCTCTCAACACATTCAT 58.920 45.455 0.00 0.00 39.30 2.57
366 367 2.104622 TCAGTGCCTCTCAACACATTCA 59.895 45.455 0.00 0.00 39.30 2.57
367 368 2.740981 CTCAGTGCCTCTCAACACATTC 59.259 50.000 0.00 0.00 39.30 2.67
368 369 2.551721 CCTCAGTGCCTCTCAACACATT 60.552 50.000 0.00 0.00 39.30 2.71
369 370 1.002888 CCTCAGTGCCTCTCAACACAT 59.997 52.381 0.00 0.00 39.30 3.21
370 371 0.394192 CCTCAGTGCCTCTCAACACA 59.606 55.000 0.00 0.00 39.30 3.72
371 372 0.952984 GCCTCAGTGCCTCTCAACAC 60.953 60.000 0.00 0.00 37.05 3.32
372 373 1.372683 GCCTCAGTGCCTCTCAACA 59.627 57.895 0.00 0.00 0.00 3.33
373 374 0.035630 ATGCCTCAGTGCCTCTCAAC 60.036 55.000 0.00 0.00 0.00 3.18
374 375 1.571955 TATGCCTCAGTGCCTCTCAA 58.428 50.000 0.00 0.00 0.00 3.02
375 376 1.798626 ATATGCCTCAGTGCCTCTCA 58.201 50.000 0.00 0.00 0.00 3.27
376 377 3.513119 TGATATATGCCTCAGTGCCTCTC 59.487 47.826 0.00 0.00 0.00 3.20
377 378 3.514539 TGATATATGCCTCAGTGCCTCT 58.485 45.455 0.00 0.00 0.00 3.69
378 379 3.969287 TGATATATGCCTCAGTGCCTC 57.031 47.619 0.00 0.00 0.00 4.70
379 380 4.287845 TCATTGATATATGCCTCAGTGCCT 59.712 41.667 0.00 0.00 31.37 4.75
380 381 4.582869 TCATTGATATATGCCTCAGTGCC 58.417 43.478 0.00 0.00 31.37 5.01
381 382 5.485620 TCTCATTGATATATGCCTCAGTGC 58.514 41.667 0.00 0.00 31.37 4.40
382 383 5.581479 GCTCTCATTGATATATGCCTCAGTG 59.419 44.000 0.00 0.00 32.24 3.66
383 384 5.247792 TGCTCTCATTGATATATGCCTCAGT 59.752 40.000 0.00 0.00 0.00 3.41
384 385 5.731591 TGCTCTCATTGATATATGCCTCAG 58.268 41.667 0.00 0.00 0.00 3.35
385 386 5.750352 TGCTCTCATTGATATATGCCTCA 57.250 39.130 0.00 0.00 0.00 3.86
386 387 8.728337 TTTATGCTCTCATTGATATATGCCTC 57.272 34.615 0.00 0.00 34.22 4.70
387 388 9.696572 ATTTTATGCTCTCATTGATATATGCCT 57.303 29.630 0.00 0.00 34.22 4.75
412 413 9.436957 CGGCTAAATCTTGAAGGTACATATTAT 57.563 33.333 0.00 0.00 0.00 1.28
413 414 7.876068 CCGGCTAAATCTTGAAGGTACATATTA 59.124 37.037 0.00 0.00 0.00 0.98
414 415 6.710744 CCGGCTAAATCTTGAAGGTACATATT 59.289 38.462 0.00 0.00 0.00 1.28
415 416 6.183361 ACCGGCTAAATCTTGAAGGTACATAT 60.183 38.462 0.00 0.00 0.00 1.78
416 417 5.129815 ACCGGCTAAATCTTGAAGGTACATA 59.870 40.000 0.00 0.00 0.00 2.29
417 418 4.080526 ACCGGCTAAATCTTGAAGGTACAT 60.081 41.667 0.00 0.00 0.00 2.29
418 419 3.262405 ACCGGCTAAATCTTGAAGGTACA 59.738 43.478 0.00 0.00 0.00 2.90
419 420 3.621715 CACCGGCTAAATCTTGAAGGTAC 59.378 47.826 0.00 0.00 0.00 3.34
420 421 3.516300 TCACCGGCTAAATCTTGAAGGTA 59.484 43.478 0.00 0.00 0.00 3.08
421 422 2.304761 TCACCGGCTAAATCTTGAAGGT 59.695 45.455 0.00 0.00 0.00 3.50
422 423 2.678336 GTCACCGGCTAAATCTTGAAGG 59.322 50.000 0.00 0.00 0.00 3.46
423 424 2.678336 GGTCACCGGCTAAATCTTGAAG 59.322 50.000 0.00 0.00 0.00 3.02
424 425 2.304761 AGGTCACCGGCTAAATCTTGAA 59.695 45.455 0.00 0.00 0.00 2.69
425 426 1.906574 AGGTCACCGGCTAAATCTTGA 59.093 47.619 0.00 0.00 0.00 3.02
426 427 2.009774 CAGGTCACCGGCTAAATCTTG 58.990 52.381 0.00 0.00 0.00 3.02
427 428 1.906574 TCAGGTCACCGGCTAAATCTT 59.093 47.619 0.00 0.00 0.00 2.40
428 429 1.482593 CTCAGGTCACCGGCTAAATCT 59.517 52.381 0.00 0.00 0.00 2.40
429 430 1.480954 TCTCAGGTCACCGGCTAAATC 59.519 52.381 0.00 0.00 0.00 2.17
430 431 1.568504 TCTCAGGTCACCGGCTAAAT 58.431 50.000 0.00 0.00 0.00 1.40
431 432 1.207089 CATCTCAGGTCACCGGCTAAA 59.793 52.381 0.00 0.00 0.00 1.85
432 433 0.824109 CATCTCAGGTCACCGGCTAA 59.176 55.000 0.00 0.00 0.00 3.09
433 434 0.033503 TCATCTCAGGTCACCGGCTA 60.034 55.000 0.00 0.00 0.00 3.93
434 435 0.689080 ATCATCTCAGGTCACCGGCT 60.689 55.000 0.00 0.00 0.00 5.52
435 436 0.179000 AATCATCTCAGGTCACCGGC 59.821 55.000 0.00 0.00 0.00 6.13
436 437 2.698855 AAATCATCTCAGGTCACCGG 57.301 50.000 0.00 0.00 0.00 5.28
437 438 3.599343 TGAAAATCATCTCAGGTCACCG 58.401 45.455 0.00 0.00 0.00 4.94
438 439 5.964958 TTTGAAAATCATCTCAGGTCACC 57.035 39.130 0.00 0.00 0.00 4.02
439 440 7.206981 TCTTTTGAAAATCATCTCAGGTCAC 57.793 36.000 0.00 0.00 0.00 3.67
440 441 7.822161 TTCTTTTGAAAATCATCTCAGGTCA 57.178 32.000 0.00 0.00 35.17 4.02
454 455 8.600449 ACAACAACTCACATTTTCTTTTGAAA 57.400 26.923 0.00 0.00 45.65 2.69
455 456 8.087750 AGACAACAACTCACATTTTCTTTTGAA 58.912 29.630 0.00 0.00 36.52 2.69
456 457 7.601856 AGACAACAACTCACATTTTCTTTTGA 58.398 30.769 0.00 0.00 0.00 2.69
457 458 7.756722 AGAGACAACAACTCACATTTTCTTTTG 59.243 33.333 0.00 0.00 36.91 2.44
458 459 7.830739 AGAGACAACAACTCACATTTTCTTTT 58.169 30.769 0.00 0.00 36.91 2.27
459 460 7.396540 AGAGACAACAACTCACATTTTCTTT 57.603 32.000 0.00 0.00 36.91 2.52
460 461 7.227512 CCTAGAGACAACAACTCACATTTTCTT 59.772 37.037 0.00 0.00 36.91 2.52
461 462 6.708054 CCTAGAGACAACAACTCACATTTTCT 59.292 38.462 0.00 0.00 36.91 2.52
462 463 6.706270 TCCTAGAGACAACAACTCACATTTTC 59.294 38.462 0.00 0.00 36.91 2.29
463 464 6.483640 GTCCTAGAGACAACAACTCACATTTT 59.516 38.462 0.00 0.00 45.55 1.82
464 465 5.992217 GTCCTAGAGACAACAACTCACATTT 59.008 40.000 0.00 0.00 45.55 2.32
465 466 5.542779 GTCCTAGAGACAACAACTCACATT 58.457 41.667 0.00 0.00 45.55 2.71
466 467 5.140747 GTCCTAGAGACAACAACTCACAT 57.859 43.478 0.00 0.00 45.55 3.21
467 468 4.585955 GTCCTAGAGACAACAACTCACA 57.414 45.455 0.00 0.00 45.55 3.58
478 479 4.020128 ACATTTTGGGTGAGTCCTAGAGAC 60.020 45.833 0.00 0.00 46.71 3.36
479 480 4.020218 CACATTTTGGGTGAGTCCTAGAGA 60.020 45.833 0.00 0.00 38.54 3.10
480 481 4.020218 TCACATTTTGGGTGAGTCCTAGAG 60.020 45.833 0.00 0.00 40.16 2.43
481 482 3.907474 TCACATTTTGGGTGAGTCCTAGA 59.093 43.478 0.00 0.00 40.16 2.43
482 483 4.286297 TCACATTTTGGGTGAGTCCTAG 57.714 45.455 0.00 0.00 40.16 3.02
489 490 3.766591 ACAACAACTCACATTTTGGGTGA 59.233 39.130 0.00 0.00 38.32 4.02
490 491 4.122143 ACAACAACTCACATTTTGGGTG 57.878 40.909 0.00 0.00 38.32 4.61
491 492 5.833131 AGATACAACAACTCACATTTTGGGT 59.167 36.000 0.00 0.00 42.72 4.51
492 493 6.331369 AGATACAACAACTCACATTTTGGG 57.669 37.500 0.00 0.00 0.00 4.12
493 494 9.345517 CAATAGATACAACAACTCACATTTTGG 57.654 33.333 0.00 0.00 0.00 3.28
494 495 8.853345 GCAATAGATACAACAACTCACATTTTG 58.147 33.333 0.00 0.00 0.00 2.44
495 496 8.575589 TGCAATAGATACAACAACTCACATTTT 58.424 29.630 0.00 0.00 0.00 1.82
496 497 8.109705 TGCAATAGATACAACAACTCACATTT 57.890 30.769 0.00 0.00 0.00 2.32
497 498 7.686438 TGCAATAGATACAACAACTCACATT 57.314 32.000 0.00 0.00 0.00 2.71
498 499 7.607607 TCTTGCAATAGATACAACAACTCACAT 59.392 33.333 0.00 0.00 0.00 3.21
499 500 6.934083 TCTTGCAATAGATACAACAACTCACA 59.066 34.615 0.00 0.00 0.00 3.58
500 501 7.364522 TCTTGCAATAGATACAACAACTCAC 57.635 36.000 0.00 0.00 0.00 3.51
501 502 7.977789 TTCTTGCAATAGATACAACAACTCA 57.022 32.000 0.00 0.00 0.00 3.41
502 503 8.289618 TGTTTCTTGCAATAGATACAACAACTC 58.710 33.333 0.00 0.00 34.56 3.01
503 504 8.165239 TGTTTCTTGCAATAGATACAACAACT 57.835 30.769 0.00 0.00 34.56 3.16
504 505 8.970691 ATGTTTCTTGCAATAGATACAACAAC 57.029 30.769 13.42 4.36 38.81 3.32
540 541 5.964477 TCCCAGGATTAGAATAGTGTTGTCT 59.036 40.000 0.00 0.00 0.00 3.41
621 623 0.685097 TTGTAGCAGCTCGGGAGTTT 59.315 50.000 0.00 0.00 0.00 2.66
640 642 3.349927 GGTAGGTGGGCTTTATTCGTTT 58.650 45.455 0.00 0.00 0.00 3.60
647 649 0.476023 TGGTGGGTAGGTGGGCTTTA 60.476 55.000 0.00 0.00 0.00 1.85
671 676 3.712907 CGTGGGGATCGGTTGGGT 61.713 66.667 0.00 0.00 0.00 4.51
967 984 4.974438 TGGGGCAAGGGACGGACT 62.974 66.667 0.00 0.00 0.00 3.85
972 989 1.225704 CTGATCTGGGGCAAGGGAC 59.774 63.158 0.00 0.00 0.00 4.46
978 995 0.253160 AGGTAACCTGATCTGGGGCA 60.253 55.000 21.40 4.56 29.57 5.36
984 1001 2.703007 GCTCATGGAGGTAACCTGATCT 59.297 50.000 0.00 0.00 31.76 2.75
992 1009 3.788227 AGTTTGTGCTCATGGAGGTAA 57.212 42.857 0.00 0.00 0.00 2.85
1008 1025 1.458639 GCAGCAGGTGGAGCAAGTTT 61.459 55.000 0.86 0.00 0.00 2.66
1047 1064 1.909302 GAGGGAAGAAGGTCATGGTGA 59.091 52.381 0.00 0.00 0.00 4.02
1091 1108 4.938756 TGGAGGTTGTGGGGGCCT 62.939 66.667 0.84 0.00 34.93 5.19
1092 1109 3.909651 TTGGAGGTTGTGGGGGCC 61.910 66.667 0.00 0.00 0.00 5.80
1101 1118 1.838073 CGTAGCAGGGGTTGGAGGTT 61.838 60.000 0.00 0.00 0.00 3.50
1134 1151 0.915364 GGGGAAGAAGCACAGAGGAT 59.085 55.000 0.00 0.00 0.00 3.24
1157 1174 3.505790 TTGGTGCCCTGGTTGCGAT 62.506 57.895 0.00 0.00 0.00 4.58
1176 1193 0.108585 CCATGATAGGAACCGGTGGG 59.891 60.000 8.52 0.00 40.11 4.61
1177 1194 0.535102 GCCATGATAGGAACCGGTGG 60.535 60.000 8.52 1.97 0.00 4.61
1178 1195 0.180171 TGCCATGATAGGAACCGGTG 59.820 55.000 8.52 0.00 0.00 4.94
1179 1196 0.180406 GTGCCATGATAGGAACCGGT 59.820 55.000 0.00 0.00 30.25 5.28
1180 1197 0.469917 AGTGCCATGATAGGAACCGG 59.530 55.000 0.00 0.00 38.02 5.28
1181 1198 1.586422 CAGTGCCATGATAGGAACCG 58.414 55.000 0.00 0.00 38.02 4.44
1182 1199 1.490490 TCCAGTGCCATGATAGGAACC 59.510 52.381 0.00 0.00 38.02 3.62
1183 1200 2.435805 TCTCCAGTGCCATGATAGGAAC 59.564 50.000 0.00 0.00 37.49 3.62
1192 1209 1.761784 GATGAGAGTCTCCAGTGCCAT 59.238 52.381 17.57 2.87 0.00 4.40
1229 1246 0.179156 GGACATGTTTGGATGCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
1241 1258 1.228124 CGGTGGTGGTTGGACATGT 60.228 57.895 0.00 0.00 0.00 3.21
1351 1368 1.311747 GCACCTCCTCCCTAGTCCT 59.688 63.158 0.00 0.00 0.00 3.85
1356 1373 1.043116 CGTGATGCACCTCCTCCCTA 61.043 60.000 0.00 0.00 0.00 3.53
1385 1403 1.695242 TCTTGGGCGACAACCTTCTTA 59.305 47.619 0.00 0.00 34.76 2.10
1467 1487 6.997239 AGAAACAACGGGGAGTAAAATATC 57.003 37.500 0.00 0.00 0.00 1.63
1469 1489 7.718753 TGTAAAGAAACAACGGGGAGTAAAATA 59.281 33.333 0.00 0.00 0.00 1.40
1598 1619 5.101628 TGTTTCATGTTTTTGTGCTCTGTC 58.898 37.500 0.00 0.00 0.00 3.51
1661 1752 6.230472 AGATAATTAGCGCCATACAACATCA 58.770 36.000 2.29 0.00 0.00 3.07
1684 1775 4.838423 AGAACCTTTTGTTGGGGGAATAAG 59.162 41.667 0.00 0.00 37.29 1.73
1685 1776 4.591072 CAGAACCTTTTGTTGGGGGAATAA 59.409 41.667 0.00 0.00 37.29 1.40
1702 1793 6.920569 TCTTTCTTGTACACTTTCAGAACC 57.079 37.500 6.46 0.00 0.00 3.62
1763 1860 8.873830 AGTTCATAGACAAAATACATTCTCACG 58.126 33.333 0.00 0.00 0.00 4.35
1804 1901 9.677567 GATAAGTTGCTACAAGAAATGAAAACA 57.322 29.630 0.13 0.00 0.00 2.83
1815 1912 5.705441 TCCCAACAAGATAAGTTGCTACAAG 59.295 40.000 0.13 0.00 43.74 3.16
2033 2136 2.832129 TCTAGAAACAGCGGAAGTCCAT 59.168 45.455 0.00 0.00 35.14 3.41
2038 2141 4.515567 AGGTTTTTCTAGAAACAGCGGAAG 59.484 41.667 21.55 0.00 40.44 3.46
2331 2442 4.641792 ACGAAAGTCTGAGGGGGT 57.358 55.556 0.00 0.00 44.19 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.