AutoCloner

Multiple sequence alignment - TraesCS6A01G175900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G175900	chr6A	100.000	2729	0	0	1	2729	191661894	191664622	0.000000e+00	5040
1	TraesCS6A01G175900	chr3A	96.926	1106	31	2	1627	2729	26852239	26853344	0.000000e+00	1851
2	TraesCS6A01G175900	chr3A	95.996	1124	24	9	1626	2729	711043398	711044520	0.000000e+00	1807
3	TraesCS6A01G175900	chr6B	96.204	1001	30	2	626	1626	276304386	276303394	0.000000e+00	1631
4	TraesCS6A01G175900	chr6B	91.015	1113	84	14	1626	2729	671098892	671099997	0.000000e+00	1487
5	TraesCS6A01G175900	chr6B	84.385	634	87	10	1	628	276305423	276304796	1.800000e-171	612
6	TraesCS6A01G175900	chr3B	92.606	1082	68	10	1651	2725	765661816	765662892	0.000000e+00	1544
7	TraesCS6A01G175900	chr5A	91.817	1112	78	12	1627	2729	662372781	662373888	0.000000e+00	1537
8	TraesCS6A01G175900	chr4B	91.382	1114	82	12	1627	2729	616991561	616992671	0.000000e+00	1513
9	TraesCS6A01G175900	chr2B	91.226	1117	81	14	1627	2729	231225945	231227058	0.000000e+00	1504
10	TraesCS6A01G175900	chr7B	90.704	1108	91	12	1626	2724	628429855	628428751	0.000000e+00	1465
11	TraesCS6A01G175900	chr7B	89.474	779	66	15	863	1626	607280504	607281281	0.000000e+00	970
12	TraesCS6A01G175900	chr7B	87.294	787	70	19	866	1626	607171646	607172428	0.000000e+00	872
13	TraesCS6A01G175900	chr7A	94.191	964	49	7	1670	2629	120993187	120992227	0.000000e+00	1463
14	TraesCS6A01G175900	chr7A	90.801	674	58	3	957	1626	643992233	643992906	0.000000e+00	898
15	TraesCS6A01G175900	chr7D	88.818	787	55	23	863	1626	559105226	559106002	0.000000e+00	935
16	TraesCS6A01G175900	chr7D	89.435	672	71	0	955	1626	559225510	559226181	0.000000e+00	848

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G175900	chr6A	191661894	191664622	2728	False	5040.0	5040	100.0000	1	2729	1	chr6A.!!$F1	2728
1	TraesCS6A01G175900	chr3A	26852239	26853344	1105	False	1851.0	1851	96.9260	1627	2729	1	chr3A.!!$F1	1102
2	TraesCS6A01G175900	chr3A	711043398	711044520	1122	False	1807.0	1807	95.9960	1626	2729	1	chr3A.!!$F2	1103
3	TraesCS6A01G175900	chr6B	671098892	671099997	1105	False	1487.0	1487	91.0150	1626	2729	1	chr6B.!!$F1	1103
4	TraesCS6A01G175900	chr6B	276303394	276305423	2029	True	1121.5	1631	90.2945	1	1626	2	chr6B.!!$R1	1625
5	TraesCS6A01G175900	chr3B	765661816	765662892	1076	False	1544.0	1544	92.6060	1651	2725	1	chr3B.!!$F1	1074
6	TraesCS6A01G175900	chr5A	662372781	662373888	1107	False	1537.0	1537	91.8170	1627	2729	1	chr5A.!!$F1	1102
7	TraesCS6A01G175900	chr4B	616991561	616992671	1110	False	1513.0	1513	91.3820	1627	2729	1	chr4B.!!$F1	1102
8	TraesCS6A01G175900	chr2B	231225945	231227058	1113	False	1504.0	1504	91.2260	1627	2729	1	chr2B.!!$F1	1102
9	TraesCS6A01G175900	chr7B	628428751	628429855	1104	True	1465.0	1465	90.7040	1626	2724	1	chr7B.!!$R1	1098
10	TraesCS6A01G175900	chr7B	607280504	607281281	777	False	970.0	970	89.4740	863	1626	1	chr7B.!!$F2	763
11	TraesCS6A01G175900	chr7B	607171646	607172428	782	False	872.0	872	87.2940	866	1626	1	chr7B.!!$F1	760
12	TraesCS6A01G175900	chr7A	120992227	120993187	960	True	1463.0	1463	94.1910	1670	2629	1	chr7A.!!$R1	959
13	TraesCS6A01G175900	chr7A	643992233	643992906	673	False	898.0	898	90.8010	957	1626	1	chr7A.!!$F1	669
14	TraesCS6A01G175900	chr7D	559105226	559106002	776	False	935.0	935	88.8180	863	1626	1	chr7D.!!$F1	763
15	TraesCS6A01G175900	chr7D	559225510	559226181	671	False	848.0	848	89.4350	955	1626	1	chr7D.!!$F2	671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
624	630	0.451783	AAGCCGGAAAATGCACGATC	59.548	50.0	5.05	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2085	2572	1.011333	CTCCGTGGTGACGTTTTGTT	58.989	50.0	0.0	0.0	44.54	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	8.786826	TCCATAAAATGTCACTACGATTTTCT	57.213	30.769	0.00	0.00	32.98	2.52
111	114	7.775397	AATATTCATTCTTTTGAAATGCGGG	57.225	32.000	0.00	0.00	42.31	6.13
136	139	7.652909	GGAACATTTTTCTCATTGTCATGAACA	59.347	33.333	0.00	0.00	39.04	3.18
316	321	0.618458	TTACTGGACTGGCCCATCAC	59.382	55.000	0.00	0.00	35.33	3.06
320	325	2.125106	GACTGGCCCATCACCGAC	60.125	66.667	0.00	0.00	0.00	4.79
335	340	2.102553	GACTGTCGGCGAGGCTAC	59.897	66.667	11.20	0.00	0.00	3.58
368	373	3.555795	GCAGTAAGCAGCATATAGAGGCA	60.556	47.826	0.00	0.00	44.79	4.75
375	380	2.899900	CAGCATATAGAGGCACCCACTA	59.100	50.000	0.00	0.00	33.81	2.74
377	382	3.165875	GCATATAGAGGCACCCACTAGA	58.834	50.000	0.00	0.00	30.86	2.43
388	393	1.204941	ACCCACTAGAAACTGCTAGCG	59.795	52.381	10.77	7.61	41.21	4.26
389	394	1.471676	CCCACTAGAAACTGCTAGCGG	60.472	57.143	22.26	22.26	41.21	5.52
401	406	1.976112	CTAGCGGGGATTCCTAGCC	59.024	63.158	15.73	3.49	37.36	3.93
402	407	0.832135	CTAGCGGGGATTCCTAGCCA	60.832	60.000	15.73	5.47	37.36	4.75
405	410	1.766461	CGGGGATTCCTAGCCACCT	60.766	63.158	2.01	0.00	25.38	4.00
406	411	0.471211	CGGGGATTCCTAGCCACCTA	60.471	60.000	2.01	0.00	25.38	3.08
420	425	1.134788	CCACCTATCCTTCGCTTTCGT	60.135	52.381	0.00	0.00	36.96	3.85
449	454	0.537143	AAGCACAATCACTGGCGGAA	60.537	50.000	0.00	0.00	0.00	4.30
450	455	1.210155	GCACAATCACTGGCGGAAC	59.790	57.895	0.00	0.00	0.00	3.62
499	505	5.622770	ACAAAAAGACGAAACAAGACAGT	57.377	34.783	0.00	0.00	0.00	3.55
503	509	7.536281	ACAAAAAGACGAAACAAGACAGTAAAC	59.464	33.333	0.00	0.00	0.00	2.01
506	512	4.738740	AGACGAAACAAGACAGTAAACTCG	59.261	41.667	0.00	0.00	0.00	4.18
519	525	5.470098	ACAGTAAACTCGCTGTCAAAATGAT	59.530	36.000	0.00	0.00	41.58	2.45
520	526	5.791974	CAGTAAACTCGCTGTCAAAATGATG	59.208	40.000	0.00	0.00	0.00	3.07
540	546	2.490509	TGCAAAATCATGTCCAGCAGAG	59.509	45.455	0.00	0.00	0.00	3.35
542	548	2.753452	CAAAATCATGTCCAGCAGAGCT	59.247	45.455	0.00	0.00	40.77	4.09
598	604	3.138304	CACGAGAAAAACAGGATGGTCA	58.862	45.455	0.00	0.00	27.21	4.02
624	630	0.451783	AAGCCGGAAAATGCACGATC	59.548	50.000	5.05	0.00	0.00	3.69
634	1052	5.119898	GGAAAATGCACGATCTAGATGCTAG	59.880	44.000	10.74	1.46	40.13	3.42
654	1072	2.817844	AGGAATTTCCAAGTAACCACGC	59.182	45.455	17.57	0.00	39.61	5.34
732	1150	5.515534	GCATACCTATCCCATCCAACATTCT	60.516	44.000	0.00	0.00	0.00	2.40
733	1151	4.443978	ACCTATCCCATCCAACATTCTG	57.556	45.455	0.00	0.00	0.00	3.02
742	1160	1.202758	TCCAACATTCTGACGGCAACT	60.203	47.619	0.00	0.00	0.00	3.16
743	1161	1.608590	CCAACATTCTGACGGCAACTT	59.391	47.619	0.00	0.00	0.00	2.66
757	1175	2.351641	GGCAACTTGTCAATCATCGCAA	60.352	45.455	0.00	0.00	0.00	4.85
775	1193	1.647545	AACCGCAAGCCATGACATCG	61.648	55.000	0.00	0.00	0.00	3.84
796	1214	4.519350	TCGCCACAATTACAATTTACACCA	59.481	37.500	0.00	0.00	0.00	4.17
800	1218	5.288232	CCACAATTACAATTTACACCATGCG	59.712	40.000	0.00	0.00	0.00	4.73
806	1224	1.295792	ATTTACACCATGCGGTAGCG	58.704	50.000	10.57	10.57	46.94	4.26
828	1246	3.487209	GCGCCGTACTTATCCTATAGAGC	60.487	52.174	0.00	0.00	0.00	4.09
829	1247	3.688185	CGCCGTACTTATCCTATAGAGCA	59.312	47.826	0.00	0.00	0.00	4.26
830	1248	4.437121	CGCCGTACTTATCCTATAGAGCAC	60.437	50.000	0.00	0.00	0.00	4.40
831	1249	4.458295	GCCGTACTTATCCTATAGAGCACA	59.542	45.833	0.00	0.00	0.00	4.57
832	1250	5.392165	GCCGTACTTATCCTATAGAGCACAG	60.392	48.000	0.00	0.00	0.00	3.66
833	1251	5.392165	CCGTACTTATCCTATAGAGCACAGC	60.392	48.000	0.00	0.00	0.00	4.40
859	1277	1.896345	TCTGTCGCGAGAGAATTTCG	58.104	50.000	31.12	6.79	43.49	3.46
860	1278	0.917259	CTGTCGCGAGAGAATTTCGG	59.083	55.000	27.73	5.43	43.49	4.30
1153	1607	2.577059	GTCGCATGTTCCCCTCGA	59.423	61.111	0.00	0.00	0.00	4.04
1187	1641	3.667282	CGAGGTCCACGACGGTGT	61.667	66.667	2.04	0.00	42.80	4.16
1212	1666	1.424302	TCCTACATCCCCTACTCGGAG	59.576	57.143	2.83	2.83	31.41	4.63
1293	1747	4.729856	GTGTTCGGCCGCGTAGGT	62.730	66.667	23.51	0.00	43.70	3.08
1433	1887	2.336809	GGCGCTCTACTGGATCCG	59.663	66.667	7.64	4.62	0.00	4.18
1542	1996	4.172232	TCTATGCCGGGCCTCCCT	62.172	66.667	17.97	0.00	42.67	4.20
1606	2066	2.827190	ACGGCAGGATAGTCGCGA	60.827	61.111	3.71	3.71	40.98	5.87
1608	2068	2.805546	GGCAGGATAGTCGCGACA	59.194	61.111	37.85	24.72	0.00	4.35
1686	2169	9.487790	CTCAACAAACTCTATTCTTTCTCTCTT	57.512	33.333	0.00	0.00	0.00	2.85
1800	2286	3.011119	TCAATATAAACCAACGCGGCTT	58.989	40.909	12.47	0.00	39.03	4.35
1852	2338	3.317406	ACATGGTATACAGAGCCATCCA	58.683	45.455	5.01	0.00	40.68	3.41
2085	2572	1.665916	GTGCAGCAAGAGCAGACGA	60.666	57.895	0.00	0.00	43.63	4.20
2091	2579	2.032054	CAGCAAGAGCAGACGAACAAAA	59.968	45.455	0.00	0.00	45.49	2.44
2476	2967	3.872511	ATTGGCGCAATCAAGAATCAA	57.127	38.095	10.83	0.00	26.27	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
86	87	8.040132	TCCCGCATTTCAAAAGAATGAATATTT	58.960	29.630	1.32	0.00	38.98	1.40
87	88	7.555087	TCCCGCATTTCAAAAGAATGAATATT	58.445	30.769	1.32	0.00	38.98	1.28
88	89	7.111247	TCCCGCATTTCAAAAGAATGAATAT	57.889	32.000	1.32	0.00	38.98	1.28
92	95	4.038522	TGTTCCCGCATTTCAAAAGAATGA	59.961	37.500	1.32	0.00	36.78	2.57
97	100	5.671742	AAAATGTTCCCGCATTTCAAAAG	57.328	34.783	4.78	0.00	45.17	2.27
106	109	3.320541	ACAATGAGAAAAATGTTCCCGCA	59.679	39.130	0.00	0.00	0.00	5.69
107	110	3.913089	ACAATGAGAAAAATGTTCCCGC	58.087	40.909	0.00	0.00	0.00	6.13
111	114	8.578308	TGTTCATGACAATGAGAAAAATGTTC	57.422	30.769	0.00	0.00	43.64	3.18
298	303	1.271840	GGTGATGGGCCAGTCCAGTA	61.272	60.000	13.78	0.00	40.56	2.74
299	304	2.606587	GGTGATGGGCCAGTCCAGT	61.607	63.158	13.78	0.00	40.56	4.00
300	305	2.273449	GGTGATGGGCCAGTCCAG	59.727	66.667	13.78	0.00	40.56	3.86
301	306	3.716195	CGGTGATGGGCCAGTCCA	61.716	66.667	13.78	7.19	41.60	4.02
303	308	2.125106	GTCGGTGATGGGCCAGTC	60.125	66.667	13.78	10.52	0.00	3.51
304	309	2.607750	AGTCGGTGATGGGCCAGT	60.608	61.111	13.78	0.00	0.00	4.00
306	311	2.927856	ACAGTCGGTGATGGGCCA	60.928	61.111	9.61	9.61	0.00	5.36
320	325	4.554363	CCGTAGCCTCGCCGACAG	62.554	72.222	0.00	0.00	0.00	3.51
335	340	0.387239	GCTTACTGCAAGGCAAACCG	60.387	55.000	0.00	0.00	40.82	4.44
355	360	2.109229	AGTGGGTGCCTCTATATGCT	57.891	50.000	0.00	0.00	0.00	3.79
359	364	4.649674	CAGTTTCTAGTGGGTGCCTCTATA	59.350	45.833	0.00	0.00	30.63	1.31
361	366	2.832129	CAGTTTCTAGTGGGTGCCTCTA	59.168	50.000	0.00	0.00	0.00	2.43
368	373	1.204941	CGCTAGCAGTTTCTAGTGGGT	59.795	52.381	16.45	0.00	41.23	4.51
375	380	0.912486	AATCCCCGCTAGCAGTTTCT	59.088	50.000	16.45	0.00	0.00	2.52
377	382	0.107165	GGAATCCCCGCTAGCAGTTT	60.107	55.000	16.45	4.11	0.00	2.66
388	393	1.909986	GATAGGTGGCTAGGAATCCCC	59.090	57.143	0.00	0.00	0.00	4.81
389	394	1.909986	GGATAGGTGGCTAGGAATCCC	59.090	57.143	0.00	0.00	0.00	3.85
401	406	2.295253	ACGAAAGCGAAGGATAGGTG	57.705	50.000	0.00	0.00	41.64	4.00
402	407	3.000727	CAAACGAAAGCGAAGGATAGGT	58.999	45.455	0.00	0.00	41.64	3.08
405	410	3.322211	TCCAAACGAAAGCGAAGGATA	57.678	42.857	0.00	0.00	41.64	2.59
406	411	2.178912	TCCAAACGAAAGCGAAGGAT	57.821	45.000	0.00	0.00	41.64	3.24
420	425	3.380004	AGTGATTGTGCTTTCGTTCCAAA	59.620	39.130	0.00	0.00	0.00	3.28
432	437	1.210155	GTTCCGCCAGTGATTGTGC	59.790	57.895	0.00	0.00	0.00	4.57
434	439	0.250124	TTCGTTCCGCCAGTGATTGT	60.250	50.000	0.00	0.00	0.00	2.71
437	442	1.156736	CTTTTCGTTCCGCCAGTGAT	58.843	50.000	0.00	0.00	0.00	3.06
449	454	1.344763	CTCCCCACTCTGACTTTTCGT	59.655	52.381	0.00	0.00	0.00	3.85
450	455	1.344763	ACTCCCCACTCTGACTTTTCG	59.655	52.381	0.00	0.00	0.00	3.46
478	483	7.749126	AGTTTACTGTCTTGTTTCGTCTTTTTG	59.251	33.333	0.00	0.00	0.00	2.44
483	488	4.738740	CGAGTTTACTGTCTTGTTTCGTCT	59.261	41.667	0.00	0.00	0.00	4.18
484	489	4.605573	GCGAGTTTACTGTCTTGTTTCGTC	60.606	45.833	0.00	0.00	0.00	4.20
485	490	3.244579	GCGAGTTTACTGTCTTGTTTCGT	59.755	43.478	0.00	0.00	0.00	3.85
486	491	3.489785	AGCGAGTTTACTGTCTTGTTTCG	59.510	43.478	0.00	0.00	0.00	3.46
499	505	4.215185	TGCATCATTTTGACAGCGAGTTTA	59.785	37.500	0.00	0.00	34.63	2.01
503	509	2.905959	TGCATCATTTTGACAGCGAG	57.094	45.000	0.00	0.00	34.63	5.03
506	512	5.849357	TGATTTTGCATCATTTTGACAGC	57.151	34.783	0.00	0.00	33.13	4.40
510	516	6.465084	TGGACATGATTTTGCATCATTTTGA	58.535	32.000	0.00	0.00	36.69	2.69
519	525	2.490509	CTCTGCTGGACATGATTTTGCA	59.509	45.455	0.00	2.45	0.00	4.08
520	526	2.734492	GCTCTGCTGGACATGATTTTGC	60.734	50.000	0.00	0.00	0.00	3.68
540	546	3.367395	GGTCAAAATAAGAAGGGTGCAGC	60.367	47.826	7.55	7.55	0.00	5.25
542	548	4.079253	GAGGTCAAAATAAGAAGGGTGCA	58.921	43.478	0.00	0.00	0.00	4.57
590	596	1.133025	CGGCTTGAACAATGACCATCC	59.867	52.381	0.00	0.00	0.00	3.51
598	604	2.036992	TGCATTTTCCGGCTTGAACAAT	59.963	40.909	0.00	0.00	0.00	2.71
624	630	7.442666	GGTTACTTGGAAATTCCTAGCATCTAG	59.557	40.741	20.49	0.15	42.05	2.43
634	1052	2.094906	GGCGTGGTTACTTGGAAATTCC	60.095	50.000	4.79	4.79	36.96	3.01
732	1150	1.960417	TGATTGACAAGTTGCCGTCA	58.040	45.000	1.81	0.00	40.30	4.35
733	1151	2.474526	CGATGATTGACAAGTTGCCGTC	60.475	50.000	1.81	0.00	0.00	4.79
742	1160	0.167908	GCGGTTGCGATGATTGACAA	59.832	50.000	0.00	0.00	0.00	3.18
743	1161	1.793581	GCGGTTGCGATGATTGACA	59.206	52.632	0.00	0.00	0.00	3.58
757	1175	2.108514	CGATGTCATGGCTTGCGGT	61.109	57.895	0.00	0.00	0.00	5.68
775	1193	5.063312	GCATGGTGTAAATTGTAATTGTGGC	59.937	40.000	0.00	0.00	0.00	5.01
800	1218	1.000736	GATAAGTACGGCGCGCTACC	61.001	60.000	32.29	13.86	0.00	3.18
806	1224	3.487209	GCTCTATAGGATAAGTACGGCGC	60.487	52.174	6.90	0.00	0.00	6.53
828	1246	1.785951	CGACAGATGCTGTGCTGTG	59.214	57.895	4.60	0.00	45.44	3.66
829	1247	2.031516	GCGACAGATGCTGTGCTGT	61.032	57.895	4.60	0.00	45.44	4.40
830	1248	2.783275	GCGACAGATGCTGTGCTG	59.217	61.111	4.60	0.00	45.44	4.41
831	1249	2.812609	CGCGACAGATGCTGTGCT	60.813	61.111	0.00	0.00	45.44	4.40
832	1250	2.796425	CTCGCGACAGATGCTGTGC	61.796	63.158	3.71	8.06	45.44	4.57
833	1251	1.138636	CTCTCGCGACAGATGCTGTG	61.139	60.000	3.71	0.00	45.44	3.66
1187	1641	4.263816	CCGAGTAGGGGATGTAGGAGATAA	60.264	50.000	0.00	0.00	35.97	1.75
1212	1666	4.078516	AAGCCGTGGTCGTAGCCC	62.079	66.667	0.00	0.00	35.01	5.19
1293	1747	4.415332	GCCGAGAAGGTCACGCGA	62.415	66.667	15.93	0.00	43.70	5.87
1298	1752	4.373116	GCACCGCCGAGAAGGTCA	62.373	66.667	0.00	0.00	43.70	4.02
1542	1996	1.672854	GGTCACGGATCACCATCGGA	61.673	60.000	0.00	0.00	34.26	4.55
1550	2004	1.753078	CTCGGGAGGTCACGGATCA	60.753	63.158	1.02	0.00	44.15	2.92
1678	2161	4.822896	GGAGATAAGCTACGGAAGAGAGAA	59.177	45.833	0.00	0.00	0.00	2.87
1686	2169	2.712087	AGAGGAGGAGATAAGCTACGGA	59.288	50.000	0.00	0.00	30.42	4.69
1764	2250	8.926710	GGTTTATATTGATATGAGACAGGAACG	58.073	37.037	0.00	0.00	0.00	3.95
1800	2286	2.427453	GCGTTCCTACTCCTCAATGAGA	59.573	50.000	12.53	0.00	36.22	3.27
1852	2338	2.088104	TGGCTAGATCGATGGGAAGT	57.912	50.000	0.54	0.00	0.00	3.01
2085	2572	1.011333	CTCCGTGGTGACGTTTTGTT	58.989	50.000	0.00	0.00	44.54	2.83
2347	2835	1.908483	GAGCTCGTCCCCCAGATTT	59.092	57.895	0.00	0.00	0.00	2.17
2476	2967	4.154195	GCAAATAGGTCGTCAACTGTGATT	59.846	41.667	0.00	0.00	35.80	2.57
2704	3196	1.088306	GTTGTTGTTGTGGACGACCA	58.912	50.000	1.37	1.37	41.26	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.