Multiple sequence alignment - TraesCS6A01G174000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G174000 chr6A 100.000 4395 0 0 1 4395 187731835 187736229 0.000000e+00 8117.0
1 TraesCS6A01G174000 chr6D 90.012 2443 119 50 2010 4395 142742381 142744755 0.000000e+00 3044.0
2 TraesCS6A01G174000 chr6D 91.542 733 41 12 970 1687 142741414 142742140 0.000000e+00 990.0
3 TraesCS6A01G174000 chr6D 85.752 765 96 7 210 973 142740401 142741153 0.000000e+00 797.0
4 TraesCS6A01G174000 chr6D 90.769 65 6 0 86 150 142740339 142740403 2.180000e-13 87.9
5 TraesCS6A01G174000 chr6B 91.298 1965 98 33 2011 3951 248349104 248351019 0.000000e+00 2614.0
6 TraesCS6A01G174000 chr6B 86.281 1261 102 33 455 1674 248347658 248348888 0.000000e+00 1304.0
7 TraesCS6A01G174000 chr6B 84.360 422 17 22 3993 4395 248351032 248351423 6.940000e-98 368.0
8 TraesCS6A01G174000 chr6B 77.528 267 17 13 86 350 248181767 248181992 2.150000e-23 121.0
9 TraesCS6A01G174000 chr7B 90.968 155 12 2 1685 1838 369872871 369872718 1.600000e-49 207.0
10 TraesCS6A01G174000 chr7D 90.260 154 14 1 1685 1837 454079230 454079077 2.680000e-47 200.0
11 TraesCS6A01G174000 chr7A 89.308 159 16 1 1681 1838 421785163 421785005 9.640000e-47 198.0
12 TraesCS6A01G174000 chr3D 88.889 162 17 1 1684 1845 441388820 441388660 9.640000e-47 198.0
13 TraesCS6A01G174000 chr2D 88.889 162 17 1 1681 1841 617101217 617101056 9.640000e-47 198.0
14 TraesCS6A01G174000 chr5D 88.415 164 18 1 1681 1843 175300061 175299898 3.470000e-46 196.0
15 TraesCS6A01G174000 chr5D 89.308 159 14 3 1685 1842 528717428 528717272 3.470000e-46 196.0
16 TraesCS6A01G174000 chr4B 88.095 168 16 4 1684 1848 146469368 146469202 3.470000e-46 196.0
17 TraesCS6A01G174000 chr3A 87.283 173 21 1 1682 1854 602017887 602017716 3.470000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G174000 chr6A 187731835 187736229 4394 False 8117.000000 8117 100.00000 1 4395 1 chr6A.!!$F1 4394
1 TraesCS6A01G174000 chr6D 142740339 142744755 4416 False 1229.725000 3044 89.51875 86 4395 4 chr6D.!!$F1 4309
2 TraesCS6A01G174000 chr6B 248347658 248351423 3765 False 1428.666667 2614 87.31300 455 4395 3 chr6B.!!$F2 3940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.036010 CCAGCCCGTGATGAAGAAGT 60.036 55.0 0.00 0.00 0.00 3.01 F
29 30 0.036388 TGATGAAGAAGTGGCCCGTC 60.036 55.0 0.00 0.00 0.00 4.79 F
30 31 0.036388 GATGAAGAAGTGGCCCGTCA 60.036 55.0 0.00 0.00 0.00 4.35 F
32 33 0.036388 TGAAGAAGTGGCCCGTCATC 60.036 55.0 0.00 2.95 0.00 2.92 F
912 919 0.042581 TGAGGTGAGGGTGAGCCATA 59.957 55.0 2.50 0.00 36.17 2.74 F
935 954 0.108281 GGAAGTGGGACTAAGCGACC 60.108 60.0 0.00 0.00 0.00 4.79 F
1759 2056 0.443869 CCGACTGAAATGAGCCAACG 59.556 55.0 0.00 0.00 0.00 4.10 F
2479 2855 0.589729 GCGTGTTGCTTCACTGTGTG 60.590 55.0 7.79 3.68 41.73 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 2037 0.443869 CGTTGGCTCATTTCAGTCGG 59.556 55.000 0.00 0.00 0.00 4.79 R
1741 2038 1.428448 TCGTTGGCTCATTTCAGTCG 58.572 50.000 0.00 0.00 0.00 4.18 R
1872 2169 1.538075 AGGCCCGAAAAACACGTAATG 59.462 47.619 0.00 0.00 0.00 1.90 R
1873 2170 1.900245 AGGCCCGAAAAACACGTAAT 58.100 45.000 0.00 0.00 0.00 1.89 R
2479 2855 0.385390 CGGCCCTGGCAATAATCAAC 59.615 55.000 10.86 0.00 44.11 3.18 R
2676 3053 1.065491 CATGTCATCCGGTCCTGGAAA 60.065 52.381 0.00 0.00 42.46 3.13 R
3019 3398 0.454600 CAATCCAGTCATGCTGTGGC 59.545 55.000 13.67 0.00 43.55 5.01 R
4284 4739 0.109964 CTATAGCTCTCGTGCTCGGC 60.110 60.000 8.49 4.11 42.97 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.371784 TTCCAGCCCGTGATGAAGA 58.628 52.632 0.00 0.00 0.00 2.87
19 20 0.690192 TTCCAGCCCGTGATGAAGAA 59.310 50.000 0.00 0.00 0.00 2.52
20 21 0.250234 TCCAGCCCGTGATGAAGAAG 59.750 55.000 0.00 0.00 0.00 2.85
21 22 0.036010 CCAGCCCGTGATGAAGAAGT 60.036 55.000 0.00 0.00 0.00 3.01
22 23 1.081892 CAGCCCGTGATGAAGAAGTG 58.918 55.000 0.00 0.00 0.00 3.16
23 24 0.036010 AGCCCGTGATGAAGAAGTGG 60.036 55.000 0.00 0.00 0.00 4.00
24 25 1.648467 GCCCGTGATGAAGAAGTGGC 61.648 60.000 0.00 0.00 0.00 5.01
25 26 1.026718 CCCGTGATGAAGAAGTGGCC 61.027 60.000 0.00 0.00 0.00 5.36
26 27 1.026718 CCGTGATGAAGAAGTGGCCC 61.027 60.000 0.00 0.00 0.00 5.80
27 28 1.361668 CGTGATGAAGAAGTGGCCCG 61.362 60.000 0.00 0.00 0.00 6.13
28 29 0.321653 GTGATGAAGAAGTGGCCCGT 60.322 55.000 0.00 0.00 0.00 5.28
29 30 0.036388 TGATGAAGAAGTGGCCCGTC 60.036 55.000 0.00 0.00 0.00 4.79
30 31 0.036388 GATGAAGAAGTGGCCCGTCA 60.036 55.000 0.00 0.00 0.00 4.35
31 32 0.620556 ATGAAGAAGTGGCCCGTCAT 59.379 50.000 0.00 0.84 0.00 3.06
32 33 0.036388 TGAAGAAGTGGCCCGTCATC 60.036 55.000 0.00 2.95 0.00 2.92
33 34 0.036388 GAAGAAGTGGCCCGTCATCA 60.036 55.000 0.00 0.00 0.00 3.07
34 35 0.400213 AAGAAGTGGCCCGTCATCAA 59.600 50.000 0.00 0.00 0.00 2.57
35 36 0.400213 AGAAGTGGCCCGTCATCAAA 59.600 50.000 0.00 0.00 0.00 2.69
36 37 0.521735 GAAGTGGCCCGTCATCAAAC 59.478 55.000 0.00 0.00 0.00 2.93
37 38 0.893727 AAGTGGCCCGTCATCAAACC 60.894 55.000 0.00 0.00 0.00 3.27
38 39 1.303317 GTGGCCCGTCATCAAACCT 60.303 57.895 0.00 0.00 0.00 3.50
39 40 1.002624 TGGCCCGTCATCAAACCTC 60.003 57.895 0.00 0.00 0.00 3.85
40 41 1.749258 GGCCCGTCATCAAACCTCC 60.749 63.158 0.00 0.00 0.00 4.30
41 42 1.002624 GCCCGTCATCAAACCTCCA 60.003 57.895 0.00 0.00 0.00 3.86
42 43 0.394352 GCCCGTCATCAAACCTCCAT 60.394 55.000 0.00 0.00 0.00 3.41
43 44 1.382522 CCCGTCATCAAACCTCCATG 58.617 55.000 0.00 0.00 0.00 3.66
44 45 0.734889 CCGTCATCAAACCTCCATGC 59.265 55.000 0.00 0.00 0.00 4.06
45 46 0.734889 CGTCATCAAACCTCCATGCC 59.265 55.000 0.00 0.00 0.00 4.40
46 47 1.679944 CGTCATCAAACCTCCATGCCT 60.680 52.381 0.00 0.00 0.00 4.75
47 48 2.019984 GTCATCAAACCTCCATGCCTC 58.980 52.381 0.00 0.00 0.00 4.70
48 49 1.019673 CATCAAACCTCCATGCCTCG 58.980 55.000 0.00 0.00 0.00 4.63
49 50 0.749454 ATCAAACCTCCATGCCTCGC 60.749 55.000 0.00 0.00 0.00 5.03
50 51 1.675310 CAAACCTCCATGCCTCGCA 60.675 57.895 0.00 0.00 44.86 5.10
51 52 1.074775 AAACCTCCATGCCTCGCAA 59.925 52.632 0.00 0.00 43.62 4.85
52 53 0.962356 AAACCTCCATGCCTCGCAAG 60.962 55.000 0.00 0.00 43.62 4.01
53 54 3.207669 CCTCCATGCCTCGCAAGC 61.208 66.667 0.00 0.00 43.62 4.01
54 55 2.124819 CTCCATGCCTCGCAAGCT 60.125 61.111 0.00 0.00 43.62 3.74
55 56 2.437180 TCCATGCCTCGCAAGCTG 60.437 61.111 0.00 0.00 43.62 4.24
56 57 2.749044 CCATGCCTCGCAAGCTGT 60.749 61.111 0.00 0.00 43.62 4.40
57 58 2.758089 CCATGCCTCGCAAGCTGTC 61.758 63.158 0.00 0.00 43.62 3.51
58 59 1.744368 CATGCCTCGCAAGCTGTCT 60.744 57.895 0.00 0.00 43.62 3.41
59 60 1.449246 ATGCCTCGCAAGCTGTCTC 60.449 57.895 0.00 0.00 43.62 3.36
60 61 1.897225 ATGCCTCGCAAGCTGTCTCT 61.897 55.000 0.00 0.00 43.62 3.10
61 62 2.099431 GCCTCGCAAGCTGTCTCTG 61.099 63.158 0.00 0.00 37.18 3.35
62 63 2.099431 CCTCGCAAGCTGTCTCTGC 61.099 63.158 0.00 0.00 37.18 4.26
63 64 2.047844 TCGCAAGCTGTCTCTGCC 60.048 61.111 1.84 0.00 37.18 4.85
64 65 2.357881 CGCAAGCTGTCTCTGCCA 60.358 61.111 1.84 0.00 0.00 4.92
65 66 1.962822 CGCAAGCTGTCTCTGCCAA 60.963 57.895 1.84 0.00 0.00 4.52
66 67 1.578423 GCAAGCTGTCTCTGCCAAC 59.422 57.895 0.00 0.00 0.00 3.77
67 68 1.168407 GCAAGCTGTCTCTGCCAACA 61.168 55.000 0.00 0.00 0.00 3.33
68 69 1.311859 CAAGCTGTCTCTGCCAACAA 58.688 50.000 0.00 0.00 0.00 2.83
69 70 1.266175 CAAGCTGTCTCTGCCAACAAG 59.734 52.381 0.00 0.00 0.00 3.16
70 71 0.471617 AGCTGTCTCTGCCAACAAGT 59.528 50.000 0.00 0.00 0.00 3.16
71 72 0.590195 GCTGTCTCTGCCAACAAGTG 59.410 55.000 0.00 0.00 0.00 3.16
72 73 1.811558 GCTGTCTCTGCCAACAAGTGA 60.812 52.381 0.00 0.00 0.00 3.41
73 74 2.775890 CTGTCTCTGCCAACAAGTGAT 58.224 47.619 0.00 0.00 0.00 3.06
74 75 2.483106 CTGTCTCTGCCAACAAGTGATG 59.517 50.000 0.00 0.00 0.00 3.07
75 76 1.198637 GTCTCTGCCAACAAGTGATGC 59.801 52.381 0.00 0.00 0.00 3.91
76 77 0.167470 CTCTGCCAACAAGTGATGCG 59.833 55.000 0.00 0.00 0.00 4.73
77 78 0.250252 TCTGCCAACAAGTGATGCGA 60.250 50.000 0.00 0.00 0.00 5.10
78 79 0.167470 CTGCCAACAAGTGATGCGAG 59.833 55.000 0.00 0.00 0.00 5.03
79 80 0.534877 TGCCAACAAGTGATGCGAGT 60.535 50.000 0.00 0.00 0.00 4.18
80 81 0.593128 GCCAACAAGTGATGCGAGTT 59.407 50.000 0.00 0.00 0.00 3.01
81 82 1.001378 GCCAACAAGTGATGCGAGTTT 60.001 47.619 0.00 0.00 0.00 2.66
82 83 2.543653 GCCAACAAGTGATGCGAGTTTT 60.544 45.455 0.00 0.00 0.00 2.43
83 84 3.300009 CCAACAAGTGATGCGAGTTTTC 58.700 45.455 0.00 0.00 0.00 2.29
84 85 3.003689 CCAACAAGTGATGCGAGTTTTCT 59.996 43.478 0.00 0.00 0.00 2.52
85 86 4.498009 CCAACAAGTGATGCGAGTTTTCTT 60.498 41.667 0.00 0.00 0.00 2.52
86 87 4.214980 ACAAGTGATGCGAGTTTTCTTG 57.785 40.909 0.00 0.00 37.43 3.02
87 88 3.876914 ACAAGTGATGCGAGTTTTCTTGA 59.123 39.130 0.00 0.00 35.99 3.02
88 89 4.024556 ACAAGTGATGCGAGTTTTCTTGAG 60.025 41.667 0.00 0.00 35.99 3.02
101 102 7.585573 CGAGTTTTCTTGAGATTTTGTTCTCTG 59.414 37.037 3.41 0.00 42.22 3.35
142 143 9.537192 TTTATGATCGTTACTAGGGTAATGTTG 57.463 33.333 0.00 0.00 42.43 3.33
150 151 8.992073 CGTTACTAGGGTAATGTTGTTACTTTT 58.008 33.333 0.00 0.00 39.67 2.27
154 155 9.227777 ACTAGGGTAATGTTGTTACTTTTCATC 57.772 33.333 0.00 0.00 0.00 2.92
155 156 9.449719 CTAGGGTAATGTTGTTACTTTTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
156 157 8.336801 AGGGTAATGTTGTTACTTTTCATCTC 57.663 34.615 0.00 0.00 0.00 2.75
157 158 8.164070 AGGGTAATGTTGTTACTTTTCATCTCT 58.836 33.333 0.00 0.00 0.00 3.10
158 159 8.237267 GGGTAATGTTGTTACTTTTCATCTCTG 58.763 37.037 0.00 0.00 0.00 3.35
159 160 8.784043 GGTAATGTTGTTACTTTTCATCTCTGT 58.216 33.333 0.00 0.00 0.00 3.41
178 179 9.965824 ATCTCTGTTTTAGTTTAAACATGTTGG 57.034 29.630 20.06 5.24 44.44 3.77
179 180 8.410141 TCTCTGTTTTAGTTTAAACATGTTGGG 58.590 33.333 20.06 5.93 44.44 4.12
180 181 8.068892 TCTGTTTTAGTTTAAACATGTTGGGT 57.931 30.769 20.06 0.00 44.44 4.51
181 182 8.532819 TCTGTTTTAGTTTAAACATGTTGGGTT 58.467 29.630 20.06 0.00 44.44 4.11
182 183 9.157104 CTGTTTTAGTTTAAACATGTTGGGTTT 57.843 29.630 20.06 0.00 44.44 3.27
183 184 8.936864 TGTTTTAGTTTAAACATGTTGGGTTTG 58.063 29.630 20.06 0.00 41.65 2.93
184 185 9.152595 GTTTTAGTTTAAACATGTTGGGTTTGA 57.847 29.630 20.06 0.00 38.77 2.69
185 186 8.934507 TTTAGTTTAAACATGTTGGGTTTGAG 57.065 30.769 20.06 0.00 38.77 3.02
186 187 5.912892 AGTTTAAACATGTTGGGTTTGAGG 58.087 37.500 20.06 0.00 38.77 3.86
187 188 5.423931 AGTTTAAACATGTTGGGTTTGAGGT 59.576 36.000 20.06 0.00 38.77 3.85
188 189 6.608002 AGTTTAAACATGTTGGGTTTGAGGTA 59.392 34.615 20.06 0.00 38.77 3.08
189 190 4.929819 AAACATGTTGGGTTTGAGGTAC 57.070 40.909 12.82 0.00 37.10 3.34
190 191 4.542697 AAACATGTTGGGTTTGAGGTACT 58.457 39.130 12.82 0.00 37.10 2.73
191 192 4.986054 ACATGTTGGGTTTGAGGTACTA 57.014 40.909 0.00 0.00 41.55 1.82
192 193 4.648651 ACATGTTGGGTTTGAGGTACTAC 58.351 43.478 0.00 0.00 41.55 2.73
193 194 4.349930 ACATGTTGGGTTTGAGGTACTACT 59.650 41.667 0.00 0.00 41.55 2.57
194 195 5.163131 ACATGTTGGGTTTGAGGTACTACTT 60.163 40.000 0.00 0.00 41.55 2.24
195 196 4.964593 TGTTGGGTTTGAGGTACTACTTC 58.035 43.478 0.00 0.00 41.55 3.01
196 197 4.409574 TGTTGGGTTTGAGGTACTACTTCA 59.590 41.667 0.00 0.00 41.55 3.02
197 198 4.884668 TGGGTTTGAGGTACTACTTCAG 57.115 45.455 1.68 0.00 41.55 3.02
198 199 3.007614 TGGGTTTGAGGTACTACTTCAGC 59.992 47.826 1.68 0.52 41.55 4.26
199 200 3.597255 GGTTTGAGGTACTACTTCAGCC 58.403 50.000 1.68 5.16 41.55 4.85
200 201 3.251571 GTTTGAGGTACTACTTCAGCCG 58.748 50.000 1.68 0.00 41.55 5.52
201 202 2.211250 TGAGGTACTACTTCAGCCGT 57.789 50.000 0.00 0.00 41.55 5.68
202 203 2.089980 TGAGGTACTACTTCAGCCGTC 58.910 52.381 0.00 0.00 41.55 4.79
203 204 1.063764 GAGGTACTACTTCAGCCGTCG 59.936 57.143 0.00 0.00 41.55 5.12
204 205 0.100146 GGTACTACTTCAGCCGTCGG 59.900 60.000 6.99 6.99 0.00 4.79
205 206 0.100146 GTACTACTTCAGCCGTCGGG 59.900 60.000 14.38 0.00 0.00 5.14
206 207 1.033746 TACTACTTCAGCCGTCGGGG 61.034 60.000 14.38 0.00 39.58 5.73
241 242 2.268762 TCCATGCTTGTGCTGTTGTA 57.731 45.000 0.00 0.00 40.48 2.41
257 258 6.099701 TGCTGTTGTAGGATCCTGTAATATGT 59.900 38.462 25.28 0.00 0.00 2.29
277 278 2.167075 GTGGCTATTTTGGATGCTGCTT 59.833 45.455 0.00 0.00 0.00 3.91
278 279 2.428171 TGGCTATTTTGGATGCTGCTTC 59.572 45.455 6.97 6.97 0.00 3.86
289 290 0.603707 TGCTGCTTCTCAGGTTTCCG 60.604 55.000 0.00 0.00 43.06 4.30
296 297 3.119814 GCTTCTCAGGTTTCCGAAATTCC 60.120 47.826 0.00 0.00 0.00 3.01
297 298 3.067684 TCTCAGGTTTCCGAAATTCCC 57.932 47.619 0.00 0.00 0.00 3.97
311 313 4.588278 GAAATTCCCGTTCTCTTAATGCG 58.412 43.478 0.00 0.00 0.00 4.73
313 315 0.535335 TCCCGTTCTCTTAATGCGCT 59.465 50.000 9.73 0.00 0.00 5.92
320 322 4.437390 CGTTCTCTTAATGCGCTGGAAAAT 60.437 41.667 9.73 0.00 0.00 1.82
339 341 6.038492 GGAAAATACCAAAATCATTGGCCATG 59.962 38.462 6.09 7.61 43.23 3.66
342 344 3.106054 ACCAAAATCATTGGCCATGCTA 58.894 40.909 6.09 0.00 43.23 3.49
354 356 4.156477 TGGCCATGCTAAAACCTAAAACT 58.844 39.130 0.00 0.00 0.00 2.66
359 361 7.822334 GGCCATGCTAAAACCTAAAACTAAATT 59.178 33.333 0.00 0.00 0.00 1.82
369 371 5.571357 ACCTAAAACTAAATTGCGCAAATCG 59.429 36.000 28.81 16.85 42.12 3.34
386 388 7.408710 GCGCAAATCGAAATAAATATGCTTCTC 60.409 37.037 0.30 0.00 41.67 2.87
392 394 8.948631 TCGAAATAAATATGCTTCTCTTCTGT 57.051 30.769 0.00 0.00 0.00 3.41
482 484 6.992063 AGGCACTATGAAAGAACATAACAG 57.008 37.500 0.00 0.00 36.02 3.16
504 506 4.689549 TCCCTTCGGCCCTGACGA 62.690 66.667 0.00 0.00 43.26 4.20
554 556 0.327480 TCCTGATATGGGCTGGTGGT 60.327 55.000 0.00 0.00 0.00 4.16
556 558 0.250038 CTGATATGGGCTGGTGGTCG 60.250 60.000 0.00 0.00 0.00 4.79
579 581 3.561503 CGTACAACAACGTCAGATCAGA 58.438 45.455 0.00 0.00 38.07 3.27
591 593 4.518590 CGTCAGATCAGACATGAGTAGGAT 59.481 45.833 17.28 0.00 39.29 3.24
593 595 4.831710 TCAGATCAGACATGAGTAGGATGG 59.168 45.833 0.00 0.00 39.29 3.51
633 635 1.069823 CCTGGATGGTTCGATCTCAGG 59.930 57.143 13.18 13.18 35.89 3.86
634 636 1.069823 CTGGATGGTTCGATCTCAGGG 59.930 57.143 0.00 0.00 0.00 4.45
635 637 0.394565 GGATGGTTCGATCTCAGGGG 59.605 60.000 0.00 0.00 0.00 4.79
636 638 0.394565 GATGGTTCGATCTCAGGGGG 59.605 60.000 0.00 0.00 0.00 5.40
695 697 5.414454 GGCGATGTCATAGTCTTCTAGATCT 59.586 44.000 0.00 0.00 0.00 2.75
697 699 6.314018 CGATGTCATAGTCTTCTAGATCTGC 58.686 44.000 5.18 0.00 0.00 4.26
705 707 0.944999 TTCTAGATCTGCCCCCTCCT 59.055 55.000 5.18 0.00 0.00 3.69
706 708 0.944999 TCTAGATCTGCCCCCTCCTT 59.055 55.000 5.18 0.00 0.00 3.36
716 718 2.597217 CCCTCCTTGTTGCGGCAA 60.597 61.111 12.11 12.11 0.00 4.52
725 727 1.028130 TGTTGCGGCAACTGAATTGA 58.972 45.000 36.75 18.79 43.85 2.57
734 736 4.176271 GGCAACTGAATTGAATAAGTGGC 58.824 43.478 10.36 10.36 41.23 5.01
743 745 5.914898 ATTGAATAAGTGGCAACCCTAAC 57.085 39.130 0.00 0.00 0.00 2.34
755 757 6.544564 GTGGCAACCCTAACAAATAATAGCTA 59.455 38.462 0.00 0.00 0.00 3.32
758 760 6.259387 GCAACCCTAACAAATAATAGCTACGT 59.741 38.462 0.00 0.00 0.00 3.57
763 765 7.208080 CCTAACAAATAATAGCTACGTCCACT 58.792 38.462 0.00 0.00 0.00 4.00
782 784 3.128068 CACTTTTCGTGCCCCCTAATTAC 59.872 47.826 0.00 0.00 36.72 1.89
805 807 4.158764 CGGGCAGGTTTTAATGATGGTTTA 59.841 41.667 0.00 0.00 0.00 2.01
810 812 7.096551 GCAGGTTTTAATGATGGTTTACATGT 58.903 34.615 2.69 2.69 40.72 3.21
850 852 6.040166 ACGTATTGAGGGTACTAATCAACGAT 59.960 38.462 18.00 6.17 35.89 3.73
882 884 2.920912 AGGTGGAGCCGGACGAAA 60.921 61.111 5.05 0.00 43.70 3.46
908 915 2.665603 GGTGAGGTGAGGGTGAGC 59.334 66.667 0.00 0.00 0.00 4.26
912 919 0.042581 TGAGGTGAGGGTGAGCCATA 59.957 55.000 2.50 0.00 36.17 2.74
915 922 0.464554 GGTGAGGGTGAGCCATAAGC 60.465 60.000 2.50 0.00 44.25 3.09
935 954 0.108281 GGAAGTGGGACTAAGCGACC 60.108 60.000 0.00 0.00 0.00 4.79
942 961 2.097825 GGGACTAAGCGACCTAAGACA 58.902 52.381 0.00 0.00 0.00 3.41
1364 1647 0.738975 CCTCGCTCGTACAATCCAGA 59.261 55.000 0.00 0.00 0.00 3.86
1398 1681 0.781191 GCTGATCGCGATTCTACTGC 59.219 55.000 24.55 20.12 0.00 4.40
1419 1702 0.802222 GTTATGTCGAGCGCTGCAGA 60.802 55.000 18.48 8.95 0.00 4.26
1514 1803 4.683832 ACACCTAACTGAATACGATCTGC 58.316 43.478 0.00 0.00 0.00 4.26
1544 1833 3.246619 GTTTAGAGACTTCAGCGTCCAG 58.753 50.000 0.00 0.00 34.46 3.86
1627 1924 2.490903 AGATGTGATGGAAAGTTGCTGC 59.509 45.455 0.00 0.00 0.00 5.25
1639 1936 1.455402 TTGCTGCACTGGGCTTCAA 60.455 52.632 0.00 4.36 45.15 2.69
1660 1957 9.774742 CTTCAATAGCTTGGTCAAATTTACTAC 57.225 33.333 0.00 0.00 32.95 2.73
1661 1958 8.276252 TCAATAGCTTGGTCAAATTTACTACC 57.724 34.615 0.00 8.79 32.95 3.18
1662 1959 7.885922 TCAATAGCTTGGTCAAATTTACTACCA 59.114 33.333 12.75 12.75 40.19 3.25
1685 1982 2.224917 CCTTGGGGTTTGGTGCTTACTA 60.225 50.000 0.00 0.00 0.00 1.82
1686 1983 2.572209 TGGGGTTTGGTGCTTACTAC 57.428 50.000 0.00 0.00 0.00 2.73
1688 1985 2.039348 TGGGGTTTGGTGCTTACTACTC 59.961 50.000 0.00 0.00 0.00 2.59
1689 1986 2.617276 GGGGTTTGGTGCTTACTACTCC 60.617 54.545 0.00 0.00 0.00 3.85
1690 1987 2.617276 GGGTTTGGTGCTTACTACTCCC 60.617 54.545 0.00 0.00 0.00 4.30
1691 1988 2.305052 GGTTTGGTGCTTACTACTCCCT 59.695 50.000 0.00 0.00 0.00 4.20
1692 1989 3.597255 GTTTGGTGCTTACTACTCCCTC 58.403 50.000 0.00 0.00 0.00 4.30
1693 1990 2.921834 TGGTGCTTACTACTCCCTCT 57.078 50.000 0.00 0.00 0.00 3.69
1694 1991 2.457598 TGGTGCTTACTACTCCCTCTG 58.542 52.381 0.00 0.00 0.00 3.35
1695 1992 2.225293 TGGTGCTTACTACTCCCTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
1696 1993 2.832733 GGTGCTTACTACTCCCTCTGTT 59.167 50.000 0.00 0.00 0.00 3.16
1697 1994 3.119065 GGTGCTTACTACTCCCTCTGTTC 60.119 52.174 0.00 0.00 0.00 3.18
1698 1995 3.510360 GTGCTTACTACTCCCTCTGTTCA 59.490 47.826 0.00 0.00 0.00 3.18
1699 1996 3.510360 TGCTTACTACTCCCTCTGTTCAC 59.490 47.826 0.00 0.00 0.00 3.18
1700 1997 3.510360 GCTTACTACTCCCTCTGTTCACA 59.490 47.826 0.00 0.00 0.00 3.58
1701 1998 4.021368 GCTTACTACTCCCTCTGTTCACAA 60.021 45.833 0.00 0.00 0.00 3.33
1702 1999 5.510861 GCTTACTACTCCCTCTGTTCACAAA 60.511 44.000 0.00 0.00 0.00 2.83
1703 2000 6.681729 TTACTACTCCCTCTGTTCACAAAT 57.318 37.500 0.00 0.00 0.00 2.32
1704 2001 7.578955 GCTTACTACTCCCTCTGTTCACAAATA 60.579 40.741 0.00 0.00 0.00 1.40
1705 2002 6.875972 ACTACTCCCTCTGTTCACAAATAT 57.124 37.500 0.00 0.00 0.00 1.28
1706 2003 7.973048 ACTACTCCCTCTGTTCACAAATATA 57.027 36.000 0.00 0.00 0.00 0.86
1707 2004 8.375493 ACTACTCCCTCTGTTCACAAATATAA 57.625 34.615 0.00 0.00 0.00 0.98
1708 2005 8.258708 ACTACTCCCTCTGTTCACAAATATAAC 58.741 37.037 0.00 0.00 0.00 1.89
1709 2006 7.016153 ACTCCCTCTGTTCACAAATATAACA 57.984 36.000 0.00 0.00 0.00 2.41
1710 2007 7.633789 ACTCCCTCTGTTCACAAATATAACAT 58.366 34.615 0.00 0.00 33.01 2.71
1711 2008 7.554118 ACTCCCTCTGTTCACAAATATAACATG 59.446 37.037 0.00 0.00 33.01 3.21
1712 2009 7.402054 TCCCTCTGTTCACAAATATAACATGT 58.598 34.615 0.00 0.00 33.01 3.21
1713 2010 7.888021 TCCCTCTGTTCACAAATATAACATGTT 59.112 33.333 16.68 16.68 33.01 2.71
1714 2011 8.522830 CCCTCTGTTCACAAATATAACATGTTT 58.477 33.333 17.78 7.40 33.01 2.83
1715 2012 9.912634 CCTCTGTTCACAAATATAACATGTTTT 57.087 29.630 17.78 11.71 33.01 2.43
1717 2014 9.689976 TCTGTTCACAAATATAACATGTTTTGG 57.310 29.630 17.78 5.37 34.23 3.28
1718 2015 9.689976 CTGTTCACAAATATAACATGTTTTGGA 57.310 29.630 17.78 10.98 34.23 3.53
1742 2039 9.314321 GGATATTTCAATATGGACTACATACCG 57.686 37.037 0.00 0.00 44.41 4.02
1744 2041 9.871238 ATATTTCAATATGGACTACATACCGAC 57.129 33.333 0.00 0.00 44.41 4.79
1745 2042 6.971726 TTCAATATGGACTACATACCGACT 57.028 37.500 0.00 0.00 44.41 4.18
1746 2043 6.327279 TCAATATGGACTACATACCGACTG 57.673 41.667 0.00 0.00 44.41 3.51
1747 2044 6.066032 TCAATATGGACTACATACCGACTGA 58.934 40.000 0.00 0.00 44.41 3.41
1748 2045 6.548251 TCAATATGGACTACATACCGACTGAA 59.452 38.462 0.00 0.00 44.41 3.02
1749 2046 6.971726 ATATGGACTACATACCGACTGAAA 57.028 37.500 0.00 0.00 44.41 2.69
1750 2047 5.871396 ATGGACTACATACCGACTGAAAT 57.129 39.130 0.00 0.00 38.26 2.17
1751 2048 5.006153 TGGACTACATACCGACTGAAATG 57.994 43.478 0.00 0.00 0.00 2.32
1752 2049 4.707934 TGGACTACATACCGACTGAAATGA 59.292 41.667 0.00 0.00 0.00 2.57
1753 2050 5.163550 TGGACTACATACCGACTGAAATGAG 60.164 44.000 0.00 0.00 0.00 2.90
1754 2051 4.683832 ACTACATACCGACTGAAATGAGC 58.316 43.478 0.00 0.00 0.00 4.26
1755 2052 2.906354 ACATACCGACTGAAATGAGCC 58.094 47.619 0.00 0.00 0.00 4.70
1756 2053 2.236146 ACATACCGACTGAAATGAGCCA 59.764 45.455 0.00 0.00 0.00 4.75
1757 2054 3.270027 CATACCGACTGAAATGAGCCAA 58.730 45.455 0.00 0.00 0.00 4.52
1758 2055 1.523758 ACCGACTGAAATGAGCCAAC 58.476 50.000 0.00 0.00 0.00 3.77
1759 2056 0.443869 CCGACTGAAATGAGCCAACG 59.556 55.000 0.00 0.00 0.00 4.10
1760 2057 1.428448 CGACTGAAATGAGCCAACGA 58.572 50.000 0.00 0.00 0.00 3.85
1761 2058 1.798223 CGACTGAAATGAGCCAACGAA 59.202 47.619 0.00 0.00 0.00 3.85
1762 2059 2.411547 CGACTGAAATGAGCCAACGAAC 60.412 50.000 0.00 0.00 0.00 3.95
1763 2060 2.548057 GACTGAAATGAGCCAACGAACA 59.452 45.455 0.00 0.00 0.00 3.18
1764 2061 2.290641 ACTGAAATGAGCCAACGAACAC 59.709 45.455 0.00 0.00 0.00 3.32
1765 2062 2.290367 CTGAAATGAGCCAACGAACACA 59.710 45.455 0.00 0.00 0.00 3.72
1766 2063 2.032799 TGAAATGAGCCAACGAACACAC 59.967 45.455 0.00 0.00 0.00 3.82
1767 2064 1.967319 AATGAGCCAACGAACACACT 58.033 45.000 0.00 0.00 0.00 3.55
1768 2065 2.831685 ATGAGCCAACGAACACACTA 57.168 45.000 0.00 0.00 0.00 2.74
1769 2066 2.605837 TGAGCCAACGAACACACTAA 57.394 45.000 0.00 0.00 0.00 2.24
1770 2067 2.907634 TGAGCCAACGAACACACTAAA 58.092 42.857 0.00 0.00 0.00 1.85
1771 2068 3.472652 TGAGCCAACGAACACACTAAAT 58.527 40.909 0.00 0.00 0.00 1.40
1772 2069 3.496884 TGAGCCAACGAACACACTAAATC 59.503 43.478 0.00 0.00 0.00 2.17
1773 2070 3.472652 AGCCAACGAACACACTAAATCA 58.527 40.909 0.00 0.00 0.00 2.57
1774 2071 4.072131 AGCCAACGAACACACTAAATCAT 58.928 39.130 0.00 0.00 0.00 2.45
1775 2072 4.083324 AGCCAACGAACACACTAAATCATG 60.083 41.667 0.00 0.00 0.00 3.07
1776 2073 4.320202 GCCAACGAACACACTAAATCATGT 60.320 41.667 0.00 0.00 0.00 3.21
1777 2074 5.382303 CCAACGAACACACTAAATCATGTC 58.618 41.667 0.00 0.00 0.00 3.06
1778 2075 5.179368 CCAACGAACACACTAAATCATGTCT 59.821 40.000 0.00 0.00 0.00 3.41
1779 2076 6.367695 CCAACGAACACACTAAATCATGTCTA 59.632 38.462 0.00 0.00 0.00 2.59
1780 2077 7.064609 CCAACGAACACACTAAATCATGTCTAT 59.935 37.037 0.00 0.00 0.00 1.98
1781 2078 7.525688 ACGAACACACTAAATCATGTCTATG 57.474 36.000 0.00 0.00 35.57 2.23
1782 2079 6.036083 ACGAACACACTAAATCATGTCTATGC 59.964 38.462 0.00 0.00 34.21 3.14
1783 2080 6.035975 CGAACACACTAAATCATGTCTATGCA 59.964 38.462 0.00 0.00 34.21 3.96
1784 2081 7.254556 CGAACACACTAAATCATGTCTATGCAT 60.255 37.037 3.79 3.79 34.21 3.96
1785 2082 8.962884 AACACACTAAATCATGTCTATGCATA 57.037 30.769 6.20 6.20 34.21 3.14
1786 2083 9.565090 AACACACTAAATCATGTCTATGCATAT 57.435 29.630 6.92 0.00 34.21 1.78
1787 2084 9.212641 ACACACTAAATCATGTCTATGCATATC 57.787 33.333 6.92 4.62 34.21 1.63
1788 2085 9.433153 CACACTAAATCATGTCTATGCATATCT 57.567 33.333 6.92 0.00 34.21 1.98
1789 2086 9.433153 ACACTAAATCATGTCTATGCATATCTG 57.567 33.333 6.92 3.14 34.21 2.90
1790 2087 9.649167 CACTAAATCATGTCTATGCATATCTGA 57.351 33.333 6.92 8.22 34.21 3.27
1794 2091 9.734984 AAATCATGTCTATGCATATCTGATTCA 57.265 29.630 21.15 9.03 34.21 2.57
1795 2092 8.719560 ATCATGTCTATGCATATCTGATTCAC 57.280 34.615 6.92 0.00 34.21 3.18
1796 2093 7.673180 TCATGTCTATGCATATCTGATTCACA 58.327 34.615 6.92 1.50 34.21 3.58
1797 2094 8.152246 TCATGTCTATGCATATCTGATTCACAA 58.848 33.333 6.92 0.00 34.21 3.33
1798 2095 8.780249 CATGTCTATGCATATCTGATTCACAAA 58.220 33.333 6.92 0.00 0.00 2.83
1799 2096 8.735692 TGTCTATGCATATCTGATTCACAAAA 57.264 30.769 6.92 0.00 0.00 2.44
1800 2097 9.176460 TGTCTATGCATATCTGATTCACAAAAA 57.824 29.630 6.92 0.00 0.00 1.94
1827 2124 9.035607 AGCTAGAACATCTTATATTTGTGAACG 57.964 33.333 0.00 0.00 0.00 3.95
1828 2125 8.276325 GCTAGAACATCTTATATTTGTGAACGG 58.724 37.037 0.00 0.00 0.00 4.44
1829 2126 9.529325 CTAGAACATCTTATATTTGTGAACGGA 57.471 33.333 0.00 0.00 0.00 4.69
1830 2127 8.425577 AGAACATCTTATATTTGTGAACGGAG 57.574 34.615 0.00 0.00 0.00 4.63
1831 2128 7.495934 AGAACATCTTATATTTGTGAACGGAGG 59.504 37.037 0.00 0.00 0.00 4.30
1832 2129 6.055588 ACATCTTATATTTGTGAACGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
1833 2130 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
1834 2131 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
1842 2139 2.028385 GTGAACGGAGGGAGTACAATGT 60.028 50.000 0.00 0.00 0.00 2.71
1886 2183 9.210426 CTTGTATAGCATCATTACGTGTTTTTC 57.790 33.333 0.00 0.00 0.00 2.29
1907 2204 1.000496 GGCCTTAGGGAGGGTTTCTT 59.000 55.000 0.00 0.00 46.40 2.52
1910 2207 2.618302 GCCTTAGGGAGGGTTTCTTGTC 60.618 54.545 0.00 0.00 46.40 3.18
1925 2222 7.407337 GGTTTCTTGTCTGTTGTACTGTAAAG 58.593 38.462 0.00 0.00 0.00 1.85
1954 2251 3.153919 GTGCACAATTGTTAGGGAAGGA 58.846 45.455 13.17 0.00 0.00 3.36
1960 2257 5.011023 CACAATTGTTAGGGAAGGAAAGCTT 59.989 40.000 8.77 0.00 0.00 3.74
1963 2260 4.178956 TGTTAGGGAAGGAAAGCTTTGT 57.821 40.909 18.30 0.00 0.00 2.83
1980 2277 4.578601 CTTTGTGTGTTTGTCGAGAACTC 58.421 43.478 11.55 9.04 0.00 3.01
1981 2278 3.239587 TGTGTGTTTGTCGAGAACTCA 57.760 42.857 11.55 11.04 0.00 3.41
1982 2279 3.186909 TGTGTGTTTGTCGAGAACTCAG 58.813 45.455 13.51 0.00 32.97 3.35
1983 2280 3.119280 TGTGTGTTTGTCGAGAACTCAGA 60.119 43.478 13.51 10.97 32.97 3.27
1984 2281 3.243177 GTGTGTTTGTCGAGAACTCAGAC 59.757 47.826 13.51 11.58 32.97 3.51
1985 2282 2.795470 GTGTTTGTCGAGAACTCAGACC 59.205 50.000 16.97 8.27 34.58 3.85
1986 2283 2.693591 TGTTTGTCGAGAACTCAGACCT 59.306 45.455 16.97 0.00 34.58 3.85
2031 2404 3.119029 ACATGGCTTACATCATTTGGCAC 60.119 43.478 0.00 0.00 37.84 5.01
2037 2410 4.990426 GCTTACATCATTTGGCACTGTTTT 59.010 37.500 0.00 0.00 0.00 2.43
2135 2508 0.689055 TGAGCACAGGAGCAAGACAT 59.311 50.000 0.00 0.00 36.85 3.06
2136 2509 1.338484 TGAGCACAGGAGCAAGACATC 60.338 52.381 0.00 0.00 36.85 3.06
2137 2510 0.689055 AGCACAGGAGCAAGACATCA 59.311 50.000 0.00 0.00 36.85 3.07
2138 2511 1.085091 GCACAGGAGCAAGACATCAG 58.915 55.000 0.00 0.00 0.00 2.90
2139 2512 1.735386 CACAGGAGCAAGACATCAGG 58.265 55.000 0.00 0.00 0.00 3.86
2140 2513 1.277273 CACAGGAGCAAGACATCAGGA 59.723 52.381 0.00 0.00 0.00 3.86
2141 2514 2.093075 CACAGGAGCAAGACATCAGGAT 60.093 50.000 0.00 0.00 0.00 3.24
2258 2632 3.121944 GCATGTCGATAAGCTGATAACCG 59.878 47.826 1.87 0.00 0.00 4.44
2289 2663 4.034048 CACACATACTCGAGGTATTTTGGC 59.966 45.833 18.41 0.00 38.92 4.52
2291 2665 4.271049 CACATACTCGAGGTATTTTGGCAG 59.729 45.833 18.41 2.07 38.92 4.85
2420 2794 0.764369 TGTCCCAGAGGTCAGTGCTT 60.764 55.000 0.00 0.00 0.00 3.91
2454 2828 7.873719 TTCTTGTCTTATTCCAAAGTGTGAA 57.126 32.000 0.00 0.00 0.00 3.18
2478 2854 1.024046 TGCGTGTTGCTTCACTGTGT 61.024 50.000 7.79 0.00 46.63 3.72
2479 2855 0.589729 GCGTGTTGCTTCACTGTGTG 60.590 55.000 7.79 3.68 41.73 3.82
2490 2866 4.618489 GCTTCACTGTGTGTTGATTATTGC 59.382 41.667 7.79 0.00 34.79 3.56
2634 3011 1.064832 GTGGAGACCGTACTAGTCCCT 60.065 57.143 0.00 0.00 34.67 4.20
2781 3158 7.039504 TCCTTTTTCTCCCATTTCATTTCTCTG 60.040 37.037 0.00 0.00 0.00 3.35
2887 3265 4.257267 GCACTTGGCAGGTAAGAAAAAT 57.743 40.909 0.50 0.00 43.97 1.82
2978 3357 3.635836 TCATCATGGCTGTTTTGTTGTCA 59.364 39.130 0.00 0.00 0.00 3.58
2994 3373 7.595819 TTGTTGTCACCTTTCAATCCTTAAT 57.404 32.000 0.00 0.00 0.00 1.40
2995 3374 8.698973 TTGTTGTCACCTTTCAATCCTTAATA 57.301 30.769 0.00 0.00 0.00 0.98
2996 3375 8.106247 TGTTGTCACCTTTCAATCCTTAATAC 57.894 34.615 0.00 0.00 0.00 1.89
3055 3435 1.083489 TTGCTTGCGTAGAATTCCCG 58.917 50.000 0.65 6.30 0.00 5.14
3079 3462 7.063308 CCGGGTGAATGAAAAGTTATGAAATTG 59.937 37.037 0.00 0.00 0.00 2.32
3088 3471 6.774354 AAAGTTATGAAATTGCAAGCAGTG 57.226 33.333 4.94 0.00 0.00 3.66
3125 3508 6.391227 TCATATTGACTATGCTTCGACTGA 57.609 37.500 0.00 0.00 37.68 3.41
3136 3519 5.947228 TGCTTCGACTGAATTCAAAATCT 57.053 34.783 9.88 0.00 32.61 2.40
3157 3552 7.762588 ATCTATACTTAGTACGGACAAGCAT 57.237 36.000 0.00 1.00 0.00 3.79
3164 3559 2.038557 AGTACGGACAAGCATCTTTGGT 59.961 45.455 0.00 0.00 34.30 3.67
3167 3562 1.069022 CGGACAAGCATCTTTGGTGTG 60.069 52.381 0.00 0.00 32.86 3.82
3264 3661 9.606631 AACTGAACAGAAGAATCCATACTTATC 57.393 33.333 8.87 0.00 0.00 1.75
3272 3669 7.601886 AGAAGAATCCATACTTATCGCAGATTG 59.398 37.037 0.00 0.00 45.12 2.67
3275 3672 4.898320 TCCATACTTATCGCAGATTGCAT 58.102 39.130 1.69 0.00 45.36 3.96
3284 3681 3.307674 TCGCAGATTGCATGTTTTGTTC 58.692 40.909 1.69 0.00 45.36 3.18
3355 3753 2.219847 CGAACATCGCGATCATGCT 58.780 52.632 20.85 0.20 31.14 3.79
3358 3756 2.398498 GAACATCGCGATCATGCTAGT 58.602 47.619 20.85 9.51 0.00 2.57
3452 3850 0.387750 GCAGCTTTAAGCACCAGCAC 60.388 55.000 19.63 0.00 45.56 4.40
3458 3856 0.948678 TTAAGCACCAGCACGGAAAC 59.051 50.000 0.00 0.00 45.49 2.78
3462 3860 1.444119 GCACCAGCACGGAAACTCAA 61.444 55.000 0.00 0.00 41.58 3.02
3466 3864 1.581934 CAGCACGGAAACTCAAGACA 58.418 50.000 0.00 0.00 0.00 3.41
3501 3899 2.356913 TCGTGTACGGGTCGTCGA 60.357 61.111 4.44 0.00 41.54 4.20
3522 3920 7.149063 CGTCGATCTTGTATGTATGAATGAGTG 60.149 40.741 0.00 0.00 0.00 3.51
3534 3932 6.645827 TGTATGAATGAGTGGTGCAAAATTTG 59.354 34.615 0.57 0.57 0.00 2.32
3582 3985 1.199097 CAAAATGTGGACGTACCCAGC 59.801 52.381 0.00 0.00 36.78 4.85
3589 3992 0.953960 GGACGTACCCAGCTGTTTGG 60.954 60.000 13.81 9.52 38.00 3.28
3596 3999 3.356529 ACCCAGCTGTTTGGATAGAAG 57.643 47.619 13.81 0.00 40.87 2.85
3680 4083 5.695816 TGAAGAAATAAACATGCCTTGCAAC 59.304 36.000 0.00 0.00 43.62 4.17
3709 4112 5.406477 GTGACATTTCAGATTGCTTTTTCCC 59.594 40.000 0.00 0.00 30.10 3.97
3712 4118 2.999185 TCAGATTGCTTTTTCCCCCT 57.001 45.000 0.00 0.00 0.00 4.79
3843 4255 2.996734 ATTTGCAAGGCCACCGGG 60.997 61.111 6.32 0.00 37.18 5.73
3907 4319 0.389948 ATCGTGGCGGAAGAGTTCAC 60.390 55.000 0.00 0.00 0.00 3.18
3984 4396 3.764466 CGCCGCCCTCTTCACTCT 61.764 66.667 0.00 0.00 0.00 3.24
4018 4440 2.031919 CGCAACCTGCCACTACCA 59.968 61.111 0.00 0.00 41.12 3.25
4019 4441 1.599518 CGCAACCTGCCACTACCAA 60.600 57.895 0.00 0.00 41.12 3.67
4071 4493 2.763710 TGCATGCTCTCCCGCCTA 60.764 61.111 20.33 0.00 0.00 3.93
4072 4494 2.315781 CTGCATGCTCTCCCGCCTAA 62.316 60.000 20.33 0.00 0.00 2.69
4074 4496 1.227674 CATGCTCTCCCGCCTAACC 60.228 63.158 0.00 0.00 0.00 2.85
4167 4621 2.197465 AGAACTGTTACCATCCCCCTC 58.803 52.381 0.00 0.00 0.00 4.30
4200 4655 6.148480 CCGTTTCAATTCCATGGCATTTTAAA 59.852 34.615 6.91 8.28 0.00 1.52
4204 4659 6.236409 TCAATTCCATGGCATTTTAAAGCAA 58.764 32.000 6.91 0.00 0.00 3.91
4229 4684 1.436983 GCGAAAGAGGGGGCGTTATG 61.437 60.000 0.00 0.00 0.00 1.90
4232 4687 0.679960 AAAGAGGGGGCGTTATGTGC 60.680 55.000 0.00 0.00 0.00 4.57
4237 4692 2.046285 GGGGCGTTATGTGCTTGCT 61.046 57.895 0.00 0.00 0.00 3.91
4238 4693 1.595093 GGGGCGTTATGTGCTTGCTT 61.595 55.000 0.00 0.00 0.00 3.91
4239 4694 0.179163 GGGCGTTATGTGCTTGCTTC 60.179 55.000 0.00 0.00 0.00 3.86
4240 4695 0.179163 GGCGTTATGTGCTTGCTTCC 60.179 55.000 0.00 0.00 0.00 3.46
4241 4696 0.804989 GCGTTATGTGCTTGCTTCCT 59.195 50.000 0.00 0.00 0.00 3.36
4242 4697 1.202076 GCGTTATGTGCTTGCTTCCTC 60.202 52.381 0.00 0.00 0.00 3.71
4243 4698 1.398390 CGTTATGTGCTTGCTTCCTCC 59.602 52.381 0.00 0.00 0.00 4.30
4244 4699 1.745653 GTTATGTGCTTGCTTCCTCCC 59.254 52.381 0.00 0.00 0.00 4.30
4245 4700 1.289160 TATGTGCTTGCTTCCTCCCT 58.711 50.000 0.00 0.00 0.00 4.20
4246 4701 1.289160 ATGTGCTTGCTTCCTCCCTA 58.711 50.000 0.00 0.00 0.00 3.53
4278 4733 4.378874 GCGGATGAGGAACAAGAAAGAAAG 60.379 45.833 0.00 0.00 0.00 2.62
4279 4734 4.997395 CGGATGAGGAACAAGAAAGAAAGA 59.003 41.667 0.00 0.00 0.00 2.52
4280 4735 5.470098 CGGATGAGGAACAAGAAAGAAAGAA 59.530 40.000 0.00 0.00 0.00 2.52
4281 4736 6.017109 CGGATGAGGAACAAGAAAGAAAGAAA 60.017 38.462 0.00 0.00 0.00 2.52
4284 4739 7.088589 TGAGGAACAAGAAAGAAAGAAACTG 57.911 36.000 0.00 0.00 0.00 3.16
4322 4777 0.251430 GCTAGATAGACGGGGCCTCT 60.251 60.000 0.00 1.23 0.00 3.69
4387 4842 3.743584 GCCCCGTCCTCCTAATTTTAGAC 60.744 52.174 0.00 0.00 32.47 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.250234 CTTCTTCATCACGGGCTGGA 59.750 55.000 0.00 0.00 0.00 3.86
2 3 0.036010 ACTTCTTCATCACGGGCTGG 60.036 55.000 0.00 0.00 0.00 4.85
3 4 1.081892 CACTTCTTCATCACGGGCTG 58.918 55.000 0.00 0.00 0.00 4.85
4 5 0.036010 CCACTTCTTCATCACGGGCT 60.036 55.000 0.00 0.00 0.00 5.19
5 6 1.648467 GCCACTTCTTCATCACGGGC 61.648 60.000 0.00 0.00 0.00 6.13
6 7 1.026718 GGCCACTTCTTCATCACGGG 61.027 60.000 0.00 0.00 0.00 5.28
7 8 1.026718 GGGCCACTTCTTCATCACGG 61.027 60.000 4.39 0.00 0.00 4.94
8 9 1.361668 CGGGCCACTTCTTCATCACG 61.362 60.000 4.39 0.00 0.00 4.35
9 10 0.321653 ACGGGCCACTTCTTCATCAC 60.322 55.000 4.39 0.00 0.00 3.06
10 11 0.036388 GACGGGCCACTTCTTCATCA 60.036 55.000 4.39 0.00 0.00 3.07
11 12 0.036388 TGACGGGCCACTTCTTCATC 60.036 55.000 4.39 0.00 0.00 2.92
12 13 0.620556 ATGACGGGCCACTTCTTCAT 59.379 50.000 4.39 0.00 0.00 2.57
13 14 0.036388 GATGACGGGCCACTTCTTCA 60.036 55.000 4.39 0.00 0.00 3.02
14 15 0.036388 TGATGACGGGCCACTTCTTC 60.036 55.000 4.39 5.79 0.00 2.87
15 16 0.400213 TTGATGACGGGCCACTTCTT 59.600 50.000 4.39 0.00 0.00 2.52
16 17 0.400213 TTTGATGACGGGCCACTTCT 59.600 50.000 4.39 0.00 0.00 2.85
17 18 0.521735 GTTTGATGACGGGCCACTTC 59.478 55.000 4.39 5.55 0.00 3.01
18 19 0.893727 GGTTTGATGACGGGCCACTT 60.894 55.000 4.39 0.00 0.00 3.16
19 20 1.303317 GGTTTGATGACGGGCCACT 60.303 57.895 4.39 0.00 0.00 4.00
20 21 1.303317 AGGTTTGATGACGGGCCAC 60.303 57.895 4.39 0.00 0.00 5.01
21 22 1.002624 GAGGTTTGATGACGGGCCA 60.003 57.895 4.39 0.00 0.00 5.36
22 23 1.749258 GGAGGTTTGATGACGGGCC 60.749 63.158 0.00 0.00 0.00 5.80
23 24 0.394352 ATGGAGGTTTGATGACGGGC 60.394 55.000 0.00 0.00 0.00 6.13
24 25 1.382522 CATGGAGGTTTGATGACGGG 58.617 55.000 0.00 0.00 0.00 5.28
25 26 0.734889 GCATGGAGGTTTGATGACGG 59.265 55.000 0.00 0.00 0.00 4.79
26 27 0.734889 GGCATGGAGGTTTGATGACG 59.265 55.000 0.00 0.00 0.00 4.35
27 28 2.019984 GAGGCATGGAGGTTTGATGAC 58.980 52.381 0.00 0.00 0.00 3.06
28 29 1.407299 CGAGGCATGGAGGTTTGATGA 60.407 52.381 0.00 0.00 0.00 2.92
29 30 1.019673 CGAGGCATGGAGGTTTGATG 58.980 55.000 0.00 0.00 0.00 3.07
30 31 0.749454 GCGAGGCATGGAGGTTTGAT 60.749 55.000 0.00 0.00 0.00 2.57
31 32 1.377202 GCGAGGCATGGAGGTTTGA 60.377 57.895 0.00 0.00 0.00 2.69
32 33 1.243342 TTGCGAGGCATGGAGGTTTG 61.243 55.000 0.00 0.00 38.76 2.93
33 34 0.962356 CTTGCGAGGCATGGAGGTTT 60.962 55.000 0.00 0.00 38.76 3.27
34 35 1.377725 CTTGCGAGGCATGGAGGTT 60.378 57.895 0.00 0.00 38.76 3.50
35 36 2.270205 CTTGCGAGGCATGGAGGT 59.730 61.111 0.00 0.00 38.76 3.85
36 37 3.207669 GCTTGCGAGGCATGGAGG 61.208 66.667 2.37 0.00 38.76 4.30
37 38 2.124819 AGCTTGCGAGGCATGGAG 60.125 61.111 2.37 0.00 38.76 3.86
38 39 2.437180 CAGCTTGCGAGGCATGGA 60.437 61.111 2.37 0.00 38.76 3.41
39 40 2.749044 ACAGCTTGCGAGGCATGG 60.749 61.111 2.37 0.00 38.76 3.66
40 41 1.703438 GAGACAGCTTGCGAGGCATG 61.703 60.000 2.37 0.00 38.76 4.06
41 42 1.449246 GAGACAGCTTGCGAGGCAT 60.449 57.895 2.37 0.00 38.76 4.40
42 43 2.047844 GAGACAGCTTGCGAGGCA 60.048 61.111 2.37 0.00 36.47 4.75
43 44 2.099431 CAGAGACAGCTTGCGAGGC 61.099 63.158 2.37 0.00 0.00 4.70
44 45 2.099431 GCAGAGACAGCTTGCGAGG 61.099 63.158 2.37 0.00 0.00 4.63
45 46 2.099431 GGCAGAGACAGCTTGCGAG 61.099 63.158 0.00 0.00 0.00 5.03
46 47 2.047844 GGCAGAGACAGCTTGCGA 60.048 61.111 1.43 0.00 0.00 5.10
47 48 1.962822 TTGGCAGAGACAGCTTGCG 60.963 57.895 1.43 0.00 0.00 4.85
48 49 1.168407 TGTTGGCAGAGACAGCTTGC 61.168 55.000 0.00 0.00 0.00 4.01
49 50 1.266175 CTTGTTGGCAGAGACAGCTTG 59.734 52.381 0.00 0.00 0.00 4.01
50 51 1.133976 ACTTGTTGGCAGAGACAGCTT 60.134 47.619 0.00 0.00 0.00 3.74
51 52 0.471617 ACTTGTTGGCAGAGACAGCT 59.528 50.000 2.26 0.00 0.00 4.24
52 53 0.590195 CACTTGTTGGCAGAGACAGC 59.410 55.000 2.26 0.00 0.00 4.40
53 54 2.245159 TCACTTGTTGGCAGAGACAG 57.755 50.000 2.26 0.00 0.00 3.51
54 55 2.497138 CATCACTTGTTGGCAGAGACA 58.503 47.619 2.26 0.00 0.00 3.41
55 56 1.198637 GCATCACTTGTTGGCAGAGAC 59.801 52.381 2.26 0.00 0.00 3.36
56 57 1.527034 GCATCACTTGTTGGCAGAGA 58.473 50.000 2.26 0.00 0.00 3.10
57 58 0.167470 CGCATCACTTGTTGGCAGAG 59.833 55.000 0.00 0.00 0.00 3.35
58 59 0.250252 TCGCATCACTTGTTGGCAGA 60.250 50.000 0.00 0.00 0.00 4.26
59 60 0.167470 CTCGCATCACTTGTTGGCAG 59.833 55.000 0.00 0.00 0.00 4.85
60 61 0.534877 ACTCGCATCACTTGTTGGCA 60.535 50.000 0.00 0.00 0.00 4.92
61 62 0.593128 AACTCGCATCACTTGTTGGC 59.407 50.000 0.00 0.00 0.00 4.52
62 63 3.003689 AGAAAACTCGCATCACTTGTTGG 59.996 43.478 0.00 0.00 0.00 3.77
63 64 4.214980 AGAAAACTCGCATCACTTGTTG 57.785 40.909 0.00 0.00 0.00 3.33
64 65 4.335315 TCAAGAAAACTCGCATCACTTGTT 59.665 37.500 0.00 0.00 35.99 2.83
65 66 3.876914 TCAAGAAAACTCGCATCACTTGT 59.123 39.130 0.00 0.00 35.99 3.16
66 67 4.212004 TCTCAAGAAAACTCGCATCACTTG 59.788 41.667 0.00 0.00 35.90 3.16
67 68 4.380531 TCTCAAGAAAACTCGCATCACTT 58.619 39.130 0.00 0.00 0.00 3.16
68 69 3.995199 TCTCAAGAAAACTCGCATCACT 58.005 40.909 0.00 0.00 0.00 3.41
69 70 4.935885 ATCTCAAGAAAACTCGCATCAC 57.064 40.909 0.00 0.00 0.00 3.06
70 71 5.947228 AAATCTCAAGAAAACTCGCATCA 57.053 34.783 0.00 0.00 0.00 3.07
71 72 6.145535 ACAAAATCTCAAGAAAACTCGCATC 58.854 36.000 0.00 0.00 0.00 3.91
72 73 6.076981 ACAAAATCTCAAGAAAACTCGCAT 57.923 33.333 0.00 0.00 0.00 4.73
73 74 5.499139 ACAAAATCTCAAGAAAACTCGCA 57.501 34.783 0.00 0.00 0.00 5.10
74 75 6.202226 AGAACAAAATCTCAAGAAAACTCGC 58.798 36.000 0.00 0.00 0.00 5.03
75 76 7.585573 CAGAGAACAAAATCTCAAGAAAACTCG 59.414 37.037 7.04 0.00 46.73 4.18
76 77 8.616076 TCAGAGAACAAAATCTCAAGAAAACTC 58.384 33.333 7.04 0.00 46.73 3.01
77 78 8.511604 TCAGAGAACAAAATCTCAAGAAAACT 57.488 30.769 7.04 0.00 46.73 2.66
78 79 9.230932 CTTCAGAGAACAAAATCTCAAGAAAAC 57.769 33.333 7.04 0.00 46.73 2.43
79 80 9.177608 TCTTCAGAGAACAAAATCTCAAGAAAA 57.822 29.630 7.04 0.00 46.73 2.29
80 81 8.737168 TCTTCAGAGAACAAAATCTCAAGAAA 57.263 30.769 7.04 1.18 46.73 2.52
81 82 8.915057 ATCTTCAGAGAACAAAATCTCAAGAA 57.085 30.769 7.04 8.78 46.73 2.52
82 83 8.152898 TGATCTTCAGAGAACAAAATCTCAAGA 58.847 33.333 7.04 7.92 46.73 3.02
83 84 8.320396 TGATCTTCAGAGAACAAAATCTCAAG 57.680 34.615 7.04 3.38 46.73 3.02
84 85 8.562892 GTTGATCTTCAGAGAACAAAATCTCAA 58.437 33.333 7.04 0.00 46.73 3.02
85 86 7.716560 TGTTGATCTTCAGAGAACAAAATCTCA 59.283 33.333 7.04 0.00 46.73 3.27
86 87 8.092521 TGTTGATCTTCAGAGAACAAAATCTC 57.907 34.615 0.00 0.00 43.51 2.75
87 88 8.455903 TTGTTGATCTTCAGAGAACAAAATCT 57.544 30.769 11.77 0.00 43.51 2.40
88 89 9.688592 ATTTGTTGATCTTCAGAGAACAAAATC 57.311 29.630 21.85 4.36 43.51 2.17
158 159 9.152595 TCAAACCCAACATGTTTAAACTAAAAC 57.847 29.630 18.72 0.00 39.35 2.43
159 160 9.372369 CTCAAACCCAACATGTTTAAACTAAAA 57.628 29.630 18.72 0.00 34.32 1.52
160 161 7.982354 CCTCAAACCCAACATGTTTAAACTAAA 59.018 33.333 18.72 0.00 34.32 1.85
161 162 7.124448 ACCTCAAACCCAACATGTTTAAACTAA 59.876 33.333 18.72 0.31 34.32 2.24
162 163 6.608002 ACCTCAAACCCAACATGTTTAAACTA 59.392 34.615 18.72 6.44 34.32 2.24
163 164 5.423931 ACCTCAAACCCAACATGTTTAAACT 59.576 36.000 18.72 2.56 34.32 2.66
164 165 5.666462 ACCTCAAACCCAACATGTTTAAAC 58.334 37.500 8.77 11.54 34.32 2.01
165 166 5.941555 ACCTCAAACCCAACATGTTTAAA 57.058 34.783 8.77 0.00 34.32 1.52
166 167 6.130569 AGTACCTCAAACCCAACATGTTTAA 58.869 36.000 8.77 0.00 34.32 1.52
167 168 5.697067 AGTACCTCAAACCCAACATGTTTA 58.303 37.500 8.77 0.00 34.32 2.01
168 169 4.542697 AGTACCTCAAACCCAACATGTTT 58.457 39.130 8.77 0.00 36.40 2.83
169 170 4.178956 AGTACCTCAAACCCAACATGTT 57.821 40.909 4.92 4.92 0.00 2.71
170 171 3.876309 AGTACCTCAAACCCAACATGT 57.124 42.857 0.00 0.00 0.00 3.21
171 172 4.906618 AGTAGTACCTCAAACCCAACATG 58.093 43.478 0.00 0.00 0.00 3.21
172 173 5.072600 TGAAGTAGTACCTCAAACCCAACAT 59.927 40.000 0.00 0.00 0.00 2.71
173 174 4.409574 TGAAGTAGTACCTCAAACCCAACA 59.590 41.667 0.00 0.00 0.00 3.33
174 175 4.964593 TGAAGTAGTACCTCAAACCCAAC 58.035 43.478 0.00 0.00 0.00 3.77
175 176 4.504340 GCTGAAGTAGTACCTCAAACCCAA 60.504 45.833 3.28 0.00 0.00 4.12
176 177 3.007614 GCTGAAGTAGTACCTCAAACCCA 59.992 47.826 3.28 0.00 0.00 4.51
177 178 3.597255 GCTGAAGTAGTACCTCAAACCC 58.403 50.000 3.28 0.00 0.00 4.11
178 179 3.597255 GGCTGAAGTAGTACCTCAAACC 58.403 50.000 3.28 4.44 0.00 3.27
179 180 3.251571 CGGCTGAAGTAGTACCTCAAAC 58.748 50.000 3.28 0.00 0.00 2.93
180 181 2.895404 ACGGCTGAAGTAGTACCTCAAA 59.105 45.455 0.00 0.00 0.00 2.69
181 182 2.490903 GACGGCTGAAGTAGTACCTCAA 59.509 50.000 0.00 0.00 0.00 3.02
182 183 2.089980 GACGGCTGAAGTAGTACCTCA 58.910 52.381 0.00 1.71 0.00 3.86
183 184 1.063764 CGACGGCTGAAGTAGTACCTC 59.936 57.143 0.00 0.00 0.00 3.85
184 185 1.093159 CGACGGCTGAAGTAGTACCT 58.907 55.000 0.00 0.00 0.00 3.08
185 186 0.100146 CCGACGGCTGAAGTAGTACC 59.900 60.000 0.00 0.00 0.00 3.34
186 187 0.100146 CCCGACGGCTGAAGTAGTAC 59.900 60.000 8.86 0.00 0.00 2.73
187 188 1.033746 CCCCGACGGCTGAAGTAGTA 61.034 60.000 8.86 0.00 0.00 1.82
188 189 2.348888 CCCCGACGGCTGAAGTAGT 61.349 63.158 8.86 0.00 0.00 2.73
189 190 2.494918 CCCCGACGGCTGAAGTAG 59.505 66.667 8.86 0.00 0.00 2.57
198 199 2.874751 GTGAAAATGCCCCGACGG 59.125 61.111 6.99 6.99 0.00 4.79
199 200 1.847890 AACGTGAAAATGCCCCGACG 61.848 55.000 0.00 0.00 0.00 5.12
200 201 0.312729 AAACGTGAAAATGCCCCGAC 59.687 50.000 0.00 0.00 0.00 4.79
201 202 0.312416 CAAACGTGAAAATGCCCCGA 59.688 50.000 0.00 0.00 0.00 5.14
202 203 0.312416 TCAAACGTGAAAATGCCCCG 59.688 50.000 0.00 0.00 0.00 5.73
203 204 2.606108 GATCAAACGTGAAAATGCCCC 58.394 47.619 0.00 0.00 37.30 5.80
204 205 2.029470 TGGATCAAACGTGAAAATGCCC 60.029 45.455 0.00 0.00 37.30 5.36
205 206 3.296322 TGGATCAAACGTGAAAATGCC 57.704 42.857 0.00 0.00 37.30 4.40
206 207 3.061161 GCATGGATCAAACGTGAAAATGC 59.939 43.478 0.00 0.00 39.06 3.56
207 208 4.487948 AGCATGGATCAAACGTGAAAATG 58.512 39.130 0.00 0.00 37.30 2.32
208 209 4.789012 AGCATGGATCAAACGTGAAAAT 57.211 36.364 0.00 0.00 37.30 1.82
209 210 4.202101 ACAAGCATGGATCAAACGTGAAAA 60.202 37.500 0.00 0.00 37.30 2.29
210 211 3.317711 ACAAGCATGGATCAAACGTGAAA 59.682 39.130 0.00 0.00 37.30 2.69
211 212 2.884012 ACAAGCATGGATCAAACGTGAA 59.116 40.909 0.00 0.00 37.30 3.18
212 213 2.226200 CACAAGCATGGATCAAACGTGA 59.774 45.455 0.00 0.00 38.41 4.35
213 214 2.587956 CACAAGCATGGATCAAACGTG 58.412 47.619 0.00 0.00 0.00 4.49
214 215 1.068333 GCACAAGCATGGATCAAACGT 60.068 47.619 0.00 0.00 41.58 3.99
241 242 6.959606 AATAGCCACATATTACAGGATCCT 57.040 37.500 9.02 9.02 0.00 3.24
257 258 2.148446 AGCAGCATCCAAAATAGCCA 57.852 45.000 0.00 0.00 0.00 4.75
277 278 2.614481 CGGGAATTTCGGAAACCTGAGA 60.614 50.000 5.12 0.00 0.00 3.27
278 279 1.737793 CGGGAATTTCGGAAACCTGAG 59.262 52.381 5.12 0.00 0.00 3.35
289 290 4.588278 CGCATTAAGAGAACGGGAATTTC 58.412 43.478 0.00 0.00 0.00 2.17
296 297 0.652592 CCAGCGCATTAAGAGAACGG 59.347 55.000 11.47 0.00 0.00 4.44
297 298 1.640428 TCCAGCGCATTAAGAGAACG 58.360 50.000 11.47 0.00 0.00 3.95
311 313 5.065090 GCCAATGATTTTGGTATTTTCCAGC 59.935 40.000 6.27 0.00 41.53 4.85
313 315 5.013495 TGGCCAATGATTTTGGTATTTTCCA 59.987 36.000 0.61 1.59 41.53 3.53
320 322 3.106054 AGCATGGCCAATGATTTTGGTA 58.894 40.909 10.96 0.00 41.53 3.25
339 341 6.363896 TGCGCAATTTAGTTTTAGGTTTTAGC 59.636 34.615 8.16 0.00 0.00 3.09
342 344 7.541122 TTTGCGCAATTTAGTTTTAGGTTTT 57.459 28.000 25.64 0.00 0.00 2.43
359 361 5.518812 AGCATATTTATTTCGATTTGCGCA 58.481 33.333 5.66 5.66 40.61 6.09
408 410 4.558226 AGCAGACATCCACATAACAAGA 57.442 40.909 0.00 0.00 0.00 3.02
415 417 5.108187 AGATTGTAAGCAGACATCCACAT 57.892 39.130 0.00 0.00 0.00 3.21
510 512 1.280457 CTTTGGCTCCAGGTACTCCT 58.720 55.000 0.00 0.00 46.37 3.69
579 581 0.753262 GACGGCCATCCTACTCATGT 59.247 55.000 2.24 0.00 0.00 3.21
591 593 3.233259 TTGATGAGCACGACGGCCA 62.233 57.895 2.24 1.45 0.00 5.36
593 595 2.027073 TGTTGATGAGCACGACGGC 61.027 57.895 0.00 0.00 0.00 5.68
648 650 3.742433 CCAAAACTTGGTGCACCATAA 57.258 42.857 37.97 23.76 46.97 1.90
695 697 4.659172 CGCAACAAGGAGGGGGCA 62.659 66.667 0.00 0.00 0.00 5.36
705 707 1.406898 TCAATTCAGTTGCCGCAACAA 59.593 42.857 32.22 21.33 45.66 2.83
706 708 1.028130 TCAATTCAGTTGCCGCAACA 58.972 45.000 32.22 16.43 45.66 3.33
716 718 4.220602 GGGTTGCCACTTATTCAATTCAGT 59.779 41.667 0.00 0.00 0.00 3.41
725 727 7.784470 TTATTTGTTAGGGTTGCCACTTATT 57.216 32.000 0.00 0.00 0.00 1.40
734 736 7.042254 GGACGTAGCTATTATTTGTTAGGGTTG 60.042 40.741 0.00 0.00 0.00 3.77
743 745 7.117454 CGAAAAGTGGACGTAGCTATTATTTG 58.883 38.462 0.00 0.00 0.00 2.32
763 765 2.358015 CGTAATTAGGGGGCACGAAAA 58.642 47.619 0.00 0.00 34.66 2.29
782 784 2.099405 ACCATCATTAAAACCTGCCCG 58.901 47.619 0.00 0.00 0.00 6.13
839 841 5.682862 GCATGCCAGTTTTATCGTTGATTAG 59.317 40.000 6.36 0.00 0.00 1.73
850 852 1.164411 CACCTCGCATGCCAGTTTTA 58.836 50.000 13.15 0.00 0.00 1.52
888 890 3.706373 CACCCTCACCTCACCCCG 61.706 72.222 0.00 0.00 0.00 5.73
908 915 0.541863 AGTCCCACTTCCGCTTATGG 59.458 55.000 0.00 0.00 0.00 2.74
912 919 0.036294 GCTTAGTCCCACTTCCGCTT 60.036 55.000 0.00 0.00 0.00 4.68
915 922 0.458025 GTCGCTTAGTCCCACTTCCG 60.458 60.000 0.00 0.00 0.00 4.30
935 954 6.074648 AGTAAGGATCCATCTCCTGTCTTAG 58.925 44.000 15.82 0.00 45.15 2.18
1219 1502 3.814268 CTTGGCGGCCATGGAACG 61.814 66.667 24.49 19.91 31.53 3.95
1341 1624 4.789075 TTGTACGAGCGAGGCGGC 62.789 66.667 0.00 0.00 0.00 6.53
1350 1633 3.849911 TGAAAGCTCTGGATTGTACGAG 58.150 45.455 0.00 0.00 0.00 4.18
1354 1637 5.441718 AAGGATGAAAGCTCTGGATTGTA 57.558 39.130 0.00 0.00 0.00 2.41
1364 1647 3.128242 CGATCAGCAAAAGGATGAAAGCT 59.872 43.478 0.00 0.00 46.46 3.74
1367 1650 2.159531 CGCGATCAGCAAAAGGATGAAA 60.160 45.455 0.00 0.00 46.46 2.69
1398 1681 1.078201 TGCAGCGCTCGACATAACAG 61.078 55.000 7.13 0.00 0.00 3.16
1419 1702 2.684927 CGCCCTCAATCTCCCTCAAAAT 60.685 50.000 0.00 0.00 0.00 1.82
1539 1828 3.209410 AGCATAATACAGCTTGCTGGAC 58.791 45.455 23.98 6.01 43.44 4.02
1544 1833 3.430218 CCGTCTAGCATAATACAGCTTGC 59.570 47.826 0.00 0.00 42.05 4.01
1591 1880 9.958180 TCCATCACATCTATTTCTGTTTAAGAA 57.042 29.630 0.00 0.00 43.37 2.52
1599 1896 6.971184 GCAACTTTCCATCACATCTATTTCTG 59.029 38.462 0.00 0.00 0.00 3.02
1607 1904 2.229543 TGCAGCAACTTTCCATCACATC 59.770 45.455 0.00 0.00 0.00 3.06
1620 1917 1.737355 TTGAAGCCCAGTGCAGCAAC 61.737 55.000 0.00 0.00 44.83 4.17
1639 1936 6.318900 GCTGGTAGTAAATTTGACCAAGCTAT 59.681 38.462 17.24 0.00 41.34 2.97
1660 1957 2.201210 ACCAAACCCCAAGGCTGG 59.799 61.111 0.00 0.00 42.72 4.85
1661 1958 2.871253 GCACCAAACCCCAAGGCTG 61.871 63.158 0.00 0.00 36.11 4.85
1662 1959 2.524148 GCACCAAACCCCAAGGCT 60.524 61.111 0.00 0.00 36.11 4.58
1669 1966 2.617276 GGGAGTAGTAAGCACCAAACCC 60.617 54.545 0.00 0.00 0.00 4.11
1675 1972 2.458620 ACAGAGGGAGTAGTAAGCACC 58.541 52.381 0.00 0.00 0.00 5.01
1685 1982 7.016153 TGTTATATTTGTGAACAGAGGGAGT 57.984 36.000 0.00 0.00 0.00 3.85
1686 1983 7.554118 ACATGTTATATTTGTGAACAGAGGGAG 59.446 37.037 0.00 0.00 36.57 4.30
1688 1985 7.630242 ACATGTTATATTTGTGAACAGAGGG 57.370 36.000 0.00 0.00 36.57 4.30
1689 1986 9.912634 AAAACATGTTATATTTGTGAACAGAGG 57.087 29.630 12.39 0.00 36.57 3.69
1691 1988 9.689976 CCAAAACATGTTATATTTGTGAACAGA 57.310 29.630 12.39 0.00 36.57 3.41
1692 1989 9.689976 TCCAAAACATGTTATATTTGTGAACAG 57.310 29.630 12.39 0.00 36.57 3.16
1716 2013 9.314321 CGGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
1718 2015 9.871238 GTCGGTATGTAGTCCATATTGAAATAT 57.129 33.333 0.00 0.00 38.29 1.28
1719 2016 9.085645 AGTCGGTATGTAGTCCATATTGAAATA 57.914 33.333 0.00 0.00 38.29 1.40
1720 2017 7.872993 CAGTCGGTATGTAGTCCATATTGAAAT 59.127 37.037 0.00 0.00 38.29 2.17
1721 2018 7.068962 TCAGTCGGTATGTAGTCCATATTGAAA 59.931 37.037 0.00 0.00 38.29 2.69
1722 2019 6.548251 TCAGTCGGTATGTAGTCCATATTGAA 59.452 38.462 0.00 0.00 38.29 2.69
1723 2020 6.066032 TCAGTCGGTATGTAGTCCATATTGA 58.934 40.000 0.00 0.00 38.29 2.57
1724 2021 6.327279 TCAGTCGGTATGTAGTCCATATTG 57.673 41.667 0.00 0.00 38.29 1.90
1725 2022 6.971726 TTCAGTCGGTATGTAGTCCATATT 57.028 37.500 0.00 0.00 38.29 1.28
1726 2023 6.971726 TTTCAGTCGGTATGTAGTCCATAT 57.028 37.500 0.00 0.00 38.29 1.78
1727 2024 6.548251 TCATTTCAGTCGGTATGTAGTCCATA 59.452 38.462 0.00 0.00 34.86 2.74
1728 2025 5.362717 TCATTTCAGTCGGTATGTAGTCCAT 59.637 40.000 0.00 0.00 37.58 3.41
1729 2026 4.707934 TCATTTCAGTCGGTATGTAGTCCA 59.292 41.667 0.00 0.00 0.00 4.02
1730 2027 5.258456 TCATTTCAGTCGGTATGTAGTCC 57.742 43.478 0.00 0.00 0.00 3.85
1731 2028 4.740695 GCTCATTTCAGTCGGTATGTAGTC 59.259 45.833 0.00 0.00 0.00 2.59
1732 2029 4.441634 GGCTCATTTCAGTCGGTATGTAGT 60.442 45.833 0.00 0.00 0.00 2.73
1733 2030 4.051922 GGCTCATTTCAGTCGGTATGTAG 58.948 47.826 0.00 0.00 0.00 2.74
1734 2031 3.449377 TGGCTCATTTCAGTCGGTATGTA 59.551 43.478 0.00 0.00 0.00 2.29
1735 2032 2.236146 TGGCTCATTTCAGTCGGTATGT 59.764 45.455 0.00 0.00 0.00 2.29
1736 2033 2.905075 TGGCTCATTTCAGTCGGTATG 58.095 47.619 0.00 0.00 0.00 2.39
1737 2034 3.270877 GTTGGCTCATTTCAGTCGGTAT 58.729 45.455 0.00 0.00 0.00 2.73
1738 2035 2.695359 GTTGGCTCATTTCAGTCGGTA 58.305 47.619 0.00 0.00 0.00 4.02
1739 2036 1.523758 GTTGGCTCATTTCAGTCGGT 58.476 50.000 0.00 0.00 0.00 4.69
1740 2037 0.443869 CGTTGGCTCATTTCAGTCGG 59.556 55.000 0.00 0.00 0.00 4.79
1741 2038 1.428448 TCGTTGGCTCATTTCAGTCG 58.572 50.000 0.00 0.00 0.00 4.18
1742 2039 2.548057 TGTTCGTTGGCTCATTTCAGTC 59.452 45.455 0.00 0.00 0.00 3.51
1743 2040 2.290641 GTGTTCGTTGGCTCATTTCAGT 59.709 45.455 0.00 0.00 0.00 3.41
1744 2041 2.290367 TGTGTTCGTTGGCTCATTTCAG 59.710 45.455 0.00 0.00 0.00 3.02
1745 2042 2.032799 GTGTGTTCGTTGGCTCATTTCA 59.967 45.455 0.00 0.00 0.00 2.69
1746 2043 2.290641 AGTGTGTTCGTTGGCTCATTTC 59.709 45.455 0.00 0.00 0.00 2.17
1747 2044 2.297701 AGTGTGTTCGTTGGCTCATTT 58.702 42.857 0.00 0.00 0.00 2.32
1748 2045 1.967319 AGTGTGTTCGTTGGCTCATT 58.033 45.000 0.00 0.00 0.00 2.57
1749 2046 2.831685 TAGTGTGTTCGTTGGCTCAT 57.168 45.000 0.00 0.00 0.00 2.90
1750 2047 2.605837 TTAGTGTGTTCGTTGGCTCA 57.394 45.000 0.00 0.00 0.00 4.26
1751 2048 3.496884 TGATTTAGTGTGTTCGTTGGCTC 59.503 43.478 0.00 0.00 0.00 4.70
1752 2049 3.472652 TGATTTAGTGTGTTCGTTGGCT 58.527 40.909 0.00 0.00 0.00 4.75
1753 2050 3.889196 TGATTTAGTGTGTTCGTTGGC 57.111 42.857 0.00 0.00 0.00 4.52
1754 2051 5.179368 AGACATGATTTAGTGTGTTCGTTGG 59.821 40.000 0.00 0.00 0.00 3.77
1755 2052 6.228273 AGACATGATTTAGTGTGTTCGTTG 57.772 37.500 0.00 0.00 0.00 4.10
1756 2053 7.413000 GCATAGACATGATTTAGTGTGTTCGTT 60.413 37.037 0.00 0.00 33.67 3.85
1757 2054 6.036083 GCATAGACATGATTTAGTGTGTTCGT 59.964 38.462 0.00 0.00 33.67 3.85
1758 2055 6.035975 TGCATAGACATGATTTAGTGTGTTCG 59.964 38.462 0.00 0.00 33.67 3.95
1759 2056 7.307493 TGCATAGACATGATTTAGTGTGTTC 57.693 36.000 0.00 0.00 33.67 3.18
1760 2057 7.870509 ATGCATAGACATGATTTAGTGTGTT 57.129 32.000 0.00 0.00 33.67 3.32
1761 2058 9.212641 GATATGCATAGACATGATTTAGTGTGT 57.787 33.333 12.79 0.00 33.67 3.72
1762 2059 9.433153 AGATATGCATAGACATGATTTAGTGTG 57.567 33.333 12.79 0.00 33.67 3.82
1763 2060 9.433153 CAGATATGCATAGACATGATTTAGTGT 57.567 33.333 12.79 0.00 33.67 3.55
1764 2061 9.649167 TCAGATATGCATAGACATGATTTAGTG 57.351 33.333 12.79 1.33 33.67 2.74
1768 2065 9.734984 TGAATCAGATATGCATAGACATGATTT 57.265 29.630 24.36 15.66 33.67 2.17
1769 2066 9.163899 GTGAATCAGATATGCATAGACATGATT 57.836 33.333 24.08 24.08 33.67 2.57
1770 2067 8.319146 TGTGAATCAGATATGCATAGACATGAT 58.681 33.333 12.79 14.12 33.67 2.45
1771 2068 7.673180 TGTGAATCAGATATGCATAGACATGA 58.327 34.615 12.79 12.63 33.67 3.07
1772 2069 7.900782 TGTGAATCAGATATGCATAGACATG 57.099 36.000 12.79 8.00 35.07 3.21
1773 2070 8.913487 TTTGTGAATCAGATATGCATAGACAT 57.087 30.769 12.79 0.00 0.00 3.06
1774 2071 8.735692 TTTTGTGAATCAGATATGCATAGACA 57.264 30.769 12.79 2.40 0.00 3.41
1801 2098 9.035607 CGTTCACAAATATAAGATGTTCTAGCT 57.964 33.333 0.00 0.00 0.00 3.32
1802 2099 8.276325 CCGTTCACAAATATAAGATGTTCTAGC 58.724 37.037 0.00 0.00 0.00 3.42
1803 2100 9.529325 TCCGTTCACAAATATAAGATGTTCTAG 57.471 33.333 0.00 0.00 0.00 2.43
1804 2101 9.529325 CTCCGTTCACAAATATAAGATGTTCTA 57.471 33.333 0.00 0.00 0.00 2.10
1805 2102 7.495934 CCTCCGTTCACAAATATAAGATGTTCT 59.504 37.037 0.00 0.00 0.00 3.01
1806 2103 7.254795 CCCTCCGTTCACAAATATAAGATGTTC 60.255 40.741 0.00 0.00 0.00 3.18
1807 2104 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
1808 2105 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
1809 2106 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
1810 2107 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
1811 2108 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
1812 2109 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
1813 2110 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
1814 2111 5.657745 TGTACTCCCTCCGTTCACAAATATA 59.342 40.000 0.00 0.00 0.00 0.86
1815 2112 4.468510 TGTACTCCCTCCGTTCACAAATAT 59.531 41.667 0.00 0.00 0.00 1.28
1816 2113 3.833650 TGTACTCCCTCCGTTCACAAATA 59.166 43.478 0.00 0.00 0.00 1.40
1817 2114 2.635915 TGTACTCCCTCCGTTCACAAAT 59.364 45.455 0.00 0.00 0.00 2.32
1818 2115 2.040939 TGTACTCCCTCCGTTCACAAA 58.959 47.619 0.00 0.00 0.00 2.83
1819 2116 1.707106 TGTACTCCCTCCGTTCACAA 58.293 50.000 0.00 0.00 0.00 3.33
1820 2117 1.707106 TTGTACTCCCTCCGTTCACA 58.293 50.000 0.00 0.00 0.00 3.58
1821 2118 2.028385 ACATTGTACTCCCTCCGTTCAC 60.028 50.000 0.00 0.00 0.00 3.18
1822 2119 2.253610 ACATTGTACTCCCTCCGTTCA 58.746 47.619 0.00 0.00 0.00 3.18
1823 2120 3.329929 AACATTGTACTCCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
1824 2121 4.895668 TTAACATTGTACTCCCTCCGTT 57.104 40.909 0.00 0.00 0.00 4.44
1825 2122 6.381994 TCTTATTAACATTGTACTCCCTCCGT 59.618 38.462 0.00 0.00 0.00 4.69
1826 2123 6.812998 TCTTATTAACATTGTACTCCCTCCG 58.187 40.000 0.00 0.00 0.00 4.63
1867 2164 3.119990 CCCGAAAAACACGTAATGATGCT 60.120 43.478 0.00 0.00 0.00 3.79
1872 2169 1.538075 AGGCCCGAAAAACACGTAATG 59.462 47.619 0.00 0.00 0.00 1.90
1873 2170 1.900245 AGGCCCGAAAAACACGTAAT 58.100 45.000 0.00 0.00 0.00 1.89
1886 2183 2.266816 GAAACCCTCCCTAAGGCCCG 62.267 65.000 0.00 0.00 44.71 6.13
1907 2204 6.040247 CACACTCTTTACAGTACAACAGACA 58.960 40.000 0.00 0.00 0.00 3.41
1910 2207 5.810587 ACACACACTCTTTACAGTACAACAG 59.189 40.000 0.00 0.00 0.00 3.16
1940 2237 5.011023 CACAAAGCTTTCCTTCCCTAACAAT 59.989 40.000 9.23 0.00 31.99 2.71
1942 2239 3.888930 CACAAAGCTTTCCTTCCCTAACA 59.111 43.478 9.23 0.00 31.99 2.41
1943 2240 3.889538 ACACAAAGCTTTCCTTCCCTAAC 59.110 43.478 9.23 0.00 31.99 2.34
1954 2251 3.438781 TCTCGACAAACACACAAAGCTTT 59.561 39.130 5.69 5.69 0.00 3.51
1960 2257 3.591023 TGAGTTCTCGACAAACACACAA 58.409 40.909 8.26 0.00 0.00 3.33
1963 2260 3.444916 GTCTGAGTTCTCGACAAACACA 58.555 45.455 14.63 7.12 0.00 3.72
1984 2281 7.038154 TCAAAACAAGAAACCTTGATACAGG 57.962 36.000 11.60 0.00 42.71 4.00
1985 2282 7.973388 TGTTCAAAACAAGAAACCTTGATACAG 59.027 33.333 11.60 0.00 42.71 2.74
1986 2283 7.831753 TGTTCAAAACAAGAAACCTTGATACA 58.168 30.769 11.60 0.00 42.71 2.29
2086 2459 8.282455 TGGTTTAATTATCGTGCTCCATTTTA 57.718 30.769 0.00 0.00 0.00 1.52
2098 2471 7.081349 TGTGCTCACTTTTGGTTTAATTATCG 58.919 34.615 1.47 0.00 0.00 2.92
2104 2477 4.274147 TCCTGTGCTCACTTTTGGTTTAA 58.726 39.130 1.47 0.00 0.00 1.52
2135 2508 4.982241 AAGTTTCACTCCTGAATCCTGA 57.018 40.909 0.00 0.00 36.26 3.86
2136 2509 7.175641 ACAATAAAGTTTCACTCCTGAATCCTG 59.824 37.037 0.00 0.00 36.26 3.86
2137 2510 7.234355 ACAATAAAGTTTCACTCCTGAATCCT 58.766 34.615 0.00 0.00 36.26 3.24
2138 2511 7.454260 ACAATAAAGTTTCACTCCTGAATCC 57.546 36.000 0.00 0.00 36.26 3.01
2139 2512 9.436957 TCTACAATAAAGTTTCACTCCTGAATC 57.563 33.333 0.00 0.00 36.26 2.52
2140 2513 9.220767 GTCTACAATAAAGTTTCACTCCTGAAT 57.779 33.333 0.00 0.00 36.26 2.57
2141 2514 8.208224 TGTCTACAATAAAGTTTCACTCCTGAA 58.792 33.333 0.00 0.00 34.39 3.02
2159 2532 9.146984 CGATATTTTAGTTTCACCTGTCTACAA 57.853 33.333 0.00 0.00 0.00 2.41
2231 2605 4.320608 TCAGCTTATCGACATGCATACA 57.679 40.909 0.00 0.00 0.00 2.29
2242 2616 5.104562 TCTACACGGTTATCAGCTTATCG 57.895 43.478 0.00 0.00 0.00 2.92
2258 2632 7.895594 ATACCTCGAGTATGTGTGCTCTACAC 61.896 46.154 12.31 3.37 45.18 2.90
2277 2651 7.706607 GGAATTTCATTACTGCCAAAATACCTC 59.293 37.037 0.00 0.00 0.00 3.85
2289 2663 5.728898 GCAGAGCGAAGGAATTTCATTACTG 60.729 44.000 0.00 6.03 32.58 2.74
2291 2665 4.094887 TGCAGAGCGAAGGAATTTCATTAC 59.905 41.667 0.00 0.00 35.43 1.89
2460 2834 0.589729 CACACAGTGAAGCAACACGC 60.590 55.000 7.81 0.00 44.35 5.34
2478 2854 1.484038 GGCCCTGGCAATAATCAACA 58.516 50.000 10.86 0.00 44.11 3.33
2479 2855 0.385390 CGGCCCTGGCAATAATCAAC 59.615 55.000 10.86 0.00 44.11 3.18
2570 2946 4.618489 CACTGTAATTTAAAGTGCAGCAGC 59.382 41.667 26.58 0.00 39.73 5.25
2571 2947 5.156355 CCACTGTAATTTAAAGTGCAGCAG 58.844 41.667 26.58 20.39 39.73 4.24
2580 2956 3.119316 CCGCCATGCCACTGTAATTTAAA 60.119 43.478 0.00 0.00 0.00 1.52
2634 3011 8.685838 TGATCTGATCATCTGAATGCAATAAA 57.314 30.769 16.06 0.00 33.59 1.40
2676 3053 1.065491 CATGTCATCCGGTCCTGGAAA 60.065 52.381 0.00 0.00 42.46 3.13
2952 3331 6.334989 ACAACAAAACAGCCATGATGATATG 58.665 36.000 0.00 0.00 0.00 1.78
2978 3357 9.495382 AGAGAGTAGTATTAAGGATTGAAAGGT 57.505 33.333 0.00 0.00 0.00 3.50
2994 3373 8.202137 GCATACCCAACAATAAAGAGAGTAGTA 58.798 37.037 0.00 0.00 0.00 1.82
2995 3374 7.048512 GCATACCCAACAATAAAGAGAGTAGT 58.951 38.462 0.00 0.00 0.00 2.73
2996 3375 6.483640 GGCATACCCAACAATAAAGAGAGTAG 59.516 42.308 0.00 0.00 0.00 2.57
3019 3398 0.454600 CAATCCAGTCATGCTGTGGC 59.545 55.000 13.67 0.00 43.55 5.01
3055 3435 7.387397 TGCAATTTCATAACTTTTCATTCACCC 59.613 33.333 0.00 0.00 0.00 4.61
3079 3462 2.939103 CCTCCTATACAACACTGCTTGC 59.061 50.000 0.00 0.00 0.00 4.01
3136 3519 7.578310 AAGATGCTTGTCCGTACTAAGTATA 57.422 36.000 0.00 0.00 28.96 1.47
3157 3552 7.791029 TCAGATACTATAATGCACACCAAAGA 58.209 34.615 0.00 0.00 0.00 2.52
3164 3559 9.264719 CTTGAACATCAGATACTATAATGCACA 57.735 33.333 0.00 0.00 0.00 4.57
3167 3562 8.545229 AGCTTGAACATCAGATACTATAATGC 57.455 34.615 0.00 0.00 0.00 3.56
3272 3669 2.738314 GCAATCCCAGAACAAAACATGC 59.262 45.455 0.00 0.00 0.00 4.06
3275 3672 4.478206 TTTGCAATCCCAGAACAAAACA 57.522 36.364 0.00 0.00 0.00 2.83
3284 3681 3.094572 AGGTGAGATTTTGCAATCCCAG 58.905 45.455 0.00 0.00 39.95 4.45
3355 3753 3.057386 TGACCACGATTTTACGAGCACTA 60.057 43.478 0.00 0.00 37.03 2.74
3358 3756 2.063266 GTGACCACGATTTTACGAGCA 58.937 47.619 0.00 0.00 37.03 4.26
3462 3860 4.649692 ACATGTTCAAAGCTCTCATGTCT 58.350 39.130 12.81 0.00 43.28 3.41
3466 3864 3.434641 CACGACATGTTCAAAGCTCTCAT 59.565 43.478 0.00 0.00 0.00 2.90
3501 3899 6.484643 GCACCACTCATTCATACATACAAGAT 59.515 38.462 0.00 0.00 0.00 2.40
3522 3920 7.446001 TCCCAATTTATTCAAATTTTGCACC 57.554 32.000 4.19 0.00 41.41 5.01
3534 3932 5.127682 ACTCATGTTGGCTCCCAATTTATTC 59.872 40.000 0.00 0.00 45.80 1.75
3582 3985 9.883142 AGAAACTCTTATCTTCTATCCAAACAG 57.117 33.333 0.00 0.00 0.00 3.16
3589 3992 7.932335 TGGACGAGAAACTCTTATCTTCTATC 58.068 38.462 0.00 0.00 29.59 2.08
3596 3999 6.797454 ACTACATGGACGAGAAACTCTTATC 58.203 40.000 0.00 0.00 0.00 1.75
3646 4049 9.309516 GCATGTTTATTTCTTCATCATTCATGT 57.690 29.630 0.00 0.00 33.66 3.21
3647 4050 8.761497 GGCATGTTTATTTCTTCATCATTCATG 58.239 33.333 0.00 0.00 0.00 3.07
3650 4053 8.814235 CAAGGCATGTTTATTTCTTCATCATTC 58.186 33.333 0.00 0.00 0.00 2.67
3651 4054 7.279313 GCAAGGCATGTTTATTTCTTCATCATT 59.721 33.333 0.00 0.00 0.00 2.57
3652 4055 6.759827 GCAAGGCATGTTTATTTCTTCATCAT 59.240 34.615 0.00 0.00 0.00 2.45
3653 4056 6.101332 GCAAGGCATGTTTATTTCTTCATCA 58.899 36.000 0.00 0.00 0.00 3.07
3654 4057 6.101332 TGCAAGGCATGTTTATTTCTTCATC 58.899 36.000 0.00 0.00 31.71 2.92
3664 4067 1.335780 CGCAGTTGCAAGGCATGTTTA 60.336 47.619 19.57 0.00 38.76 2.01
3680 4083 2.730090 GCAATCTGAAATGTCACCGCAG 60.730 50.000 0.00 0.00 0.00 5.18
3709 4112 2.835431 ATCCGTCTGCGAGGAGGG 60.835 66.667 9.51 9.51 40.26 4.30
3712 4118 1.747745 TTCGATCCGTCTGCGAGGA 60.748 57.895 0.00 0.00 41.33 3.71
3824 4231 2.274645 CCGGTGGCCTTGCAAATGA 61.275 57.895 3.32 0.00 0.00 2.57
3844 4256 2.870161 CTCGAGCGTCCGTTCGTG 60.870 66.667 21.78 16.93 46.29 4.35
3845 4257 4.755614 GCTCGAGCGTCCGTTCGT 62.756 66.667 23.61 0.00 46.29 3.85
3922 4334 0.467384 CATGGCTTCTCGGAGTGGAT 59.533 55.000 4.69 0.00 0.00 3.41
4009 4431 4.715523 TGCGCCCTTGGTAGTGGC 62.716 66.667 4.18 0.00 41.85 5.01
4054 4476 2.366393 TTAGGCGGGAGAGCATGCA 61.366 57.895 21.98 0.00 39.27 3.96
4118 4566 3.446570 ACCTCGTAACTCCGCCCG 61.447 66.667 0.00 0.00 0.00 6.13
4200 4655 1.673665 CTCTTTCGCCTGCCTTGCT 60.674 57.895 0.00 0.00 0.00 3.91
4204 4659 3.721706 CCCCTCTTTCGCCTGCCT 61.722 66.667 0.00 0.00 0.00 4.75
4229 4684 1.475930 GGATAGGGAGGAAGCAAGCAC 60.476 57.143 0.00 0.00 0.00 4.40
4232 4687 1.419387 CAGGGATAGGGAGGAAGCAAG 59.581 57.143 0.00 0.00 0.00 4.01
4237 4692 0.759436 GCGTCAGGGATAGGGAGGAA 60.759 60.000 0.00 0.00 0.00 3.36
4238 4693 1.152525 GCGTCAGGGATAGGGAGGA 60.153 63.158 0.00 0.00 0.00 3.71
4239 4694 2.565645 CGCGTCAGGGATAGGGAGG 61.566 68.421 0.00 0.00 0.00 4.30
4240 4695 2.565645 CCGCGTCAGGGATAGGGAG 61.566 68.421 4.92 0.00 0.00 4.30
4241 4696 2.367586 ATCCGCGTCAGGGATAGGGA 62.368 60.000 4.92 0.00 42.43 4.20
4242 4697 1.908793 ATCCGCGTCAGGGATAGGG 60.909 63.158 4.92 0.00 42.43 3.53
4243 4698 1.179174 TCATCCGCGTCAGGGATAGG 61.179 60.000 4.92 0.00 42.35 2.57
4244 4699 0.242286 CTCATCCGCGTCAGGGATAG 59.758 60.000 4.92 0.00 42.35 2.08
4245 4700 1.179174 CCTCATCCGCGTCAGGGATA 61.179 60.000 4.92 0.00 42.35 2.59
4246 4701 2.502492 CCTCATCCGCGTCAGGGAT 61.502 63.158 4.92 0.00 45.09 3.85
4278 4733 1.347817 CTCTCGTGCTCGGCAGTTTC 61.348 60.000 8.49 0.00 40.08 2.78
4279 4734 1.373497 CTCTCGTGCTCGGCAGTTT 60.373 57.895 8.49 0.00 40.08 2.66
4280 4735 2.259818 CTCTCGTGCTCGGCAGTT 59.740 61.111 8.49 0.00 40.08 3.16
4281 4736 4.427661 GCTCTCGTGCTCGGCAGT 62.428 66.667 8.49 0.00 40.08 4.40
4284 4739 0.109964 CTATAGCTCTCGTGCTCGGC 60.110 60.000 8.49 4.11 42.97 5.54
4322 4777 8.454106 GTGCTTGCTTAATTTAGATTCAGAGAA 58.546 33.333 0.00 0.00 0.00 2.87
4368 4823 3.181457 GGGGTCTAAAATTAGGAGGACGG 60.181 52.174 0.62 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.