Multiple sequence alignment - TraesCS6A01G173100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G173100 chr6A 100.000 2951 0 0 1 2951 185042885 185045835 0.000000e+00 5450
1 TraesCS6A01G173100 chr6A 82.828 198 26 6 2757 2951 321434482 321434674 1.410000e-38 171
2 TraesCS6A01G173100 chr6D 90.058 1217 70 23 481 1683 140314205 140315384 0.000000e+00 1530
3 TraesCS6A01G173100 chr6D 93.723 924 35 15 1715 2616 140315469 140316391 0.000000e+00 1363
4 TraesCS6A01G173100 chr6D 95.906 171 7 0 2619 2789 116858277 116858447 8.060000e-71 278
5 TraesCS6A01G173100 chr6B 90.278 936 44 18 771 1683 240381945 240382856 0.000000e+00 1181
6 TraesCS6A01G173100 chr6B 88.729 763 61 16 1 759 240381123 240381864 0.000000e+00 909
7 TraesCS6A01G173100 chr6B 88.172 651 51 13 1722 2352 240382938 240383582 0.000000e+00 752
8 TraesCS6A01G173100 chr3D 97.041 169 5 0 2621 2789 9283492 9283660 4.810000e-73 285
9 TraesCS6A01G173100 chr3D 95.455 176 7 1 2614 2789 26255873 26255699 2.240000e-71 279
10 TraesCS6A01G173100 chr3D 83.333 270 41 4 101 368 134128896 134129163 2.270000e-61 246
11 TraesCS6A01G173100 chr3D 78.261 391 62 14 101 477 48385324 48384943 2.290000e-56 230
12 TraesCS6A01G173100 chr7A 96.491 171 6 0 2619 2789 490123861 490124031 1.730000e-72 283
13 TraesCS6A01G173100 chr7A 95.906 171 7 0 2619 2789 434754140 434753970 8.060000e-71 278
14 TraesCS6A01G173100 chr7A 79.515 371 53 17 105 465 648755596 648755953 2.940000e-60 243
15 TraesCS6A01G173100 chr7A 78.919 370 55 11 101 463 646553762 646554115 2.290000e-56 230
16 TraesCS6A01G173100 chr7A 82.796 186 23 7 2765 2950 525473348 525473524 1.090000e-34 158
17 TraesCS6A01G173100 chr4D 96.491 171 6 0 2619 2789 7423475 7423305 1.730000e-72 283
18 TraesCS6A01G173100 chr3B 96.450 169 6 0 2621 2789 758150632 758150464 2.240000e-71 279
19 TraesCS6A01G173100 chr5D 94.944 178 8 1 2612 2789 276551346 276551170 8.060000e-71 278
20 TraesCS6A01G173100 chr5D 81.126 302 47 7 101 398 257736000 257736295 1.770000e-57 233
21 TraesCS6A01G173100 chr2D 95.906 171 7 0 2619 2789 101375914 101375744 8.060000e-71 278
22 TraesCS6A01G173100 chr2D 78.947 190 34 5 2763 2951 205683184 205683368 1.110000e-24 124
23 TraesCS6A01G173100 chr2D 88.043 92 9 1 2765 2856 547076143 547076232 1.120000e-19 108
24 TraesCS6A01G173100 chr2A 97.500 160 3 1 2792 2951 606695327 606695169 3.750000e-69 272
25 TraesCS6A01G173100 chr2A 83.246 191 26 5 2761 2951 87118137 87118321 1.410000e-38 171
26 TraesCS6A01G173100 chr2A 76.699 309 31 16 101 398 691629281 691629559 1.850000e-27 134
27 TraesCS6A01G173100 chr3A 96.319 163 3 3 2790 2950 258120889 258120728 6.270000e-67 265
28 TraesCS6A01G173100 chr5A 95.758 165 4 3 2789 2951 427927729 427927892 2.260000e-66 263
29 TraesCS6A01G173100 chr4A 96.296 162 2 4 2792 2950 382447074 382446914 2.260000e-66 263
30 TraesCS6A01G173100 chr4A 94.220 173 7 3 2781 2951 498961011 498961182 8.110000e-66 261
31 TraesCS6A01G173100 chr4A 94.706 170 5 4 2785 2951 498974648 498974816 8.110000e-66 261
32 TraesCS6A01G173100 chr4A 95.152 165 7 1 2787 2951 562834856 562834693 2.920000e-65 259
33 TraesCS6A01G173100 chr7D 82.410 307 45 7 101 402 32866141 32866443 2.920000e-65 259
34 TraesCS6A01G173100 chr7D 78.992 357 50 14 101 445 561717526 561717869 1.380000e-53 220
35 TraesCS6A01G173100 chr2B 77.846 325 54 14 168 479 744159027 744159346 5.020000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G173100 chr6A 185042885 185045835 2950 False 5450.000000 5450 100.000000 1 2951 1 chr6A.!!$F1 2950
1 TraesCS6A01G173100 chr6D 140314205 140316391 2186 False 1446.500000 1530 91.890500 481 2616 2 chr6D.!!$F2 2135
2 TraesCS6A01G173100 chr6B 240381123 240383582 2459 False 947.333333 1181 89.059667 1 2352 3 chr6B.!!$F1 2351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 2.009681 TGCTGAGGAGACTGGTGTTA 57.990 50.0 0.0 0.0 44.43 2.41 F
1364 1463 2.437085 TCCTCGATGCTGTAGGAAGA 57.563 50.0 0.0 0.0 36.47 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1504 0.112412 AATGGCCTTTTCCACCGTCT 59.888 50.0 3.32 0.00 39.25 4.18 R
2806 3015 0.032267 GACACGTGGGAGCTATAGCC 59.968 60.0 21.17 12.26 43.38 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.009681 TGCTGAGGAGACTGGTGTTA 57.990 50.000 0.00 0.00 44.43 2.41
72 73 8.752766 GGTTAACAGAAACCTTATTTTTAGCC 57.247 34.615 8.10 0.00 44.67 3.93
99 100 8.510243 AACTTTCGAAAAAGGGTTAGAAGTTA 57.490 30.769 12.41 0.00 45.15 2.24
103 104 5.922544 TCGAAAAAGGGTTAGAAGTTAGACG 59.077 40.000 0.00 0.00 0.00 4.18
109 110 3.509184 GGGTTAGAAGTTAGACGTGGAGT 59.491 47.826 0.00 0.00 0.00 3.85
143 144 4.978083 ACTCAAATGCTCCATGATGAAC 57.022 40.909 0.00 0.00 0.00 3.18
144 145 4.338012 ACTCAAATGCTCCATGATGAACA 58.662 39.130 0.00 0.00 0.00 3.18
148 149 5.945191 TCAAATGCTCCATGATGAACAGTAA 59.055 36.000 0.00 0.00 0.00 2.24
149 150 6.433716 TCAAATGCTCCATGATGAACAGTAAA 59.566 34.615 0.00 0.00 0.00 2.01
150 151 6.839124 AATGCTCCATGATGAACAGTAAAA 57.161 33.333 0.00 0.00 0.00 1.52
151 152 7.414222 AATGCTCCATGATGAACAGTAAAAT 57.586 32.000 0.00 0.00 0.00 1.82
152 153 6.839124 TGCTCCATGATGAACAGTAAAATT 57.161 33.333 0.00 0.00 0.00 1.82
153 154 7.230849 TGCTCCATGATGAACAGTAAAATTT 57.769 32.000 0.00 0.00 0.00 1.82
154 155 7.669427 TGCTCCATGATGAACAGTAAAATTTT 58.331 30.769 8.75 8.75 0.00 1.82
155 156 8.801299 TGCTCCATGATGAACAGTAAAATTTTA 58.199 29.630 6.54 6.54 0.00 1.52
156 157 9.294030 GCTCCATGATGAACAGTAAAATTTTAG 57.706 33.333 10.92 3.57 0.00 1.85
157 158 9.793252 CTCCATGATGAACAGTAAAATTTTAGG 57.207 33.333 10.92 9.00 0.00 2.69
213 214 9.869844 TTTTTGTGTGTTAAACTTTGACAAATG 57.130 25.926 0.05 0.00 33.26 2.32
218 219 9.312146 GTGTGTTAAACTTTGACAAATGTTTTG 57.688 29.630 22.17 7.20 41.39 2.44
268 269 5.076182 TGAAATTAGTGGAAGTCATGGCAA 58.924 37.500 0.00 0.00 0.00 4.52
305 306 7.961351 TGATGGTCCAAAAATGATAGTTTTGT 58.039 30.769 11.80 0.00 42.05 2.83
324 325 5.590530 TTGTAAACATTTTGGAGTGCTGT 57.409 34.783 0.00 0.00 0.00 4.40
448 450 9.639563 TTCTATTTTATTATTCATCAGGGTGCA 57.360 29.630 0.00 0.00 0.00 4.57
455 457 4.719026 ATTCATCAGGGTGCATATGAGT 57.281 40.909 6.97 0.00 30.53 3.41
478 480 4.286707 TCGGGATCAGAATAGGACTTTCA 58.713 43.478 0.00 0.00 0.00 2.69
479 481 4.901849 TCGGGATCAGAATAGGACTTTCAT 59.098 41.667 0.00 0.00 0.00 2.57
551 554 9.774742 CAACAATTACTTAGAGATTTTACCAGC 57.225 33.333 0.00 0.00 0.00 4.85
554 557 8.398665 CAATTACTTAGAGATTTTACCAGCCAC 58.601 37.037 0.00 0.00 0.00 5.01
559 562 8.107095 ACTTAGAGATTTTACCAGCCACAAATA 58.893 33.333 0.00 0.00 0.00 1.40
615 618 5.241662 AGTAAGCAACATGAGGAAGAAGAC 58.758 41.667 0.00 0.00 0.00 3.01
619 622 4.284490 AGCAACATGAGGAAGAAGACAGTA 59.716 41.667 0.00 0.00 0.00 2.74
621 624 5.645497 GCAACATGAGGAAGAAGACAGTAAT 59.355 40.000 0.00 0.00 0.00 1.89
623 626 6.611613 ACATGAGGAAGAAGACAGTAATGA 57.388 37.500 0.00 0.00 0.00 2.57
624 627 6.638610 ACATGAGGAAGAAGACAGTAATGAG 58.361 40.000 0.00 0.00 0.00 2.90
625 628 5.078411 TGAGGAAGAAGACAGTAATGAGC 57.922 43.478 0.00 0.00 0.00 4.26
768 861 9.668497 AAGAATACAACATTTTAGTACTCCCTC 57.332 33.333 0.00 0.00 0.00 4.30
769 862 8.265764 AGAATACAACATTTTAGTACTCCCTCC 58.734 37.037 0.00 0.00 0.00 4.30
770 863 4.828829 ACAACATTTTAGTACTCCCTCCG 58.171 43.478 0.00 0.00 0.00 4.63
771 864 4.529377 ACAACATTTTAGTACTCCCTCCGA 59.471 41.667 0.00 0.00 0.00 4.55
772 865 5.109903 CAACATTTTAGTACTCCCTCCGAG 58.890 45.833 0.00 0.00 44.95 4.63
773 866 3.705072 ACATTTTAGTACTCCCTCCGAGG 59.295 47.826 7.56 7.56 43.57 4.63
1331 1426 4.496670 CCGCAGGTAAACCTCTCG 57.503 61.111 0.00 6.08 46.65 4.04
1364 1463 2.437085 TCCTCGATGCTGTAGGAAGA 57.563 50.000 0.00 0.00 36.47 2.87
1365 1464 2.735151 TCCTCGATGCTGTAGGAAGAA 58.265 47.619 0.00 0.00 36.47 2.52
1405 1504 2.423892 GTCCGAGCTTAGTCTCATGTCA 59.576 50.000 0.00 0.00 33.41 3.58
1416 1515 1.967779 TCTCATGTCAGACGGTGGAAA 59.032 47.619 6.05 0.00 0.00 3.13
1417 1516 2.367241 TCTCATGTCAGACGGTGGAAAA 59.633 45.455 6.05 0.00 0.00 2.29
1461 1560 1.194547 CGGAACAGAAATGTGACACGG 59.805 52.381 0.22 0.00 0.00 4.94
1545 1671 1.064060 GACAGACAGTGTTTGTGGTGC 59.936 52.381 22.93 5.95 40.56 5.01
1547 1673 1.064505 CAGACAGTGTTTGTGGTGCTG 59.935 52.381 5.64 0.00 41.05 4.41
1548 1674 0.248621 GACAGTGTTTGTGGTGCTGC 60.249 55.000 0.00 0.00 41.05 5.25
1549 1675 1.066257 CAGTGTTTGTGGTGCTGCC 59.934 57.895 0.00 0.00 37.90 4.85
1550 1676 1.379710 AGTGTTTGTGGTGCTGCCA 60.380 52.632 0.00 0.00 46.95 4.92
1573 1699 1.068610 GCCAAATAAGTGCAGCACGAA 60.069 47.619 19.96 12.29 39.64 3.85
1581 1707 0.376852 GTGCAGCACGAACTTGAACA 59.623 50.000 10.47 0.00 0.00 3.18
1654 1781 3.545124 CTGCCTGCGGTGGTGGTAA 62.545 63.158 0.00 0.00 0.00 2.85
1709 1865 4.499037 GGAAACCACACTACCATGAAAC 57.501 45.455 0.00 0.00 0.00 2.78
1766 1946 2.468831 TGCCGCTCACAAATGTTTTTC 58.531 42.857 0.00 0.00 0.00 2.29
1772 1952 5.164061 CCGCTCACAAATGTTTTTCTATTGC 60.164 40.000 0.00 0.00 0.00 3.56
1773 1953 5.401972 CGCTCACAAATGTTTTTCTATTGCA 59.598 36.000 0.00 0.00 0.00 4.08
1774 1954 6.399249 CGCTCACAAATGTTTTTCTATTGCAG 60.399 38.462 0.00 0.00 0.00 4.41
1775 1955 6.617105 GCTCACAAATGTTTTTCTATTGCAGC 60.617 38.462 0.00 0.00 0.00 5.25
1791 1971 1.001378 GCAGCGACCAAACTTCATTGT 60.001 47.619 0.00 0.00 0.00 2.71
1832 2033 8.867112 AAAGCTTATATCTGCATGTCATTTTG 57.133 30.769 0.00 0.00 0.00 2.44
1875 2076 1.066757 GATCGTAGGTTCCCCGAAGAC 59.933 57.143 5.56 0.00 33.89 3.01
1991 2192 7.686438 ATTCATAACAACTGTAGATGCACAA 57.314 32.000 0.00 0.00 0.00 3.33
2288 2495 0.106066 CCATGGAGGCCCTTTGCATA 60.106 55.000 5.56 0.00 43.89 3.14
2290 2497 2.322658 CATGGAGGCCCTTTGCATAAT 58.677 47.619 0.00 0.00 43.89 1.28
2326 2533 8.742554 ACATCGAAAGTTTTATGAATTGGTTC 57.257 30.769 15.14 0.00 34.85 3.62
2445 2654 0.961019 TGTCTTGCATGCACTTTCCC 59.039 50.000 22.58 5.97 0.00 3.97
2548 2757 8.696410 TGTTCTTTTGTTCCAAAGTATTGAAC 57.304 30.769 0.00 0.00 38.94 3.18
2574 2783 3.839490 TGTTCCAGCCAATTCATCCAAAT 59.161 39.130 0.00 0.00 0.00 2.32
2604 2813 5.243981 ACTGATGGAAAGAGACAGACAATG 58.756 41.667 0.00 0.00 33.53 2.82
2616 2825 5.670485 AGACAGACAATGTACTTCAACACA 58.330 37.500 0.00 0.00 44.17 3.72
2617 2826 5.755375 AGACAGACAATGTACTTCAACACAG 59.245 40.000 0.00 0.00 44.17 3.66
2618 2827 5.428253 ACAGACAATGTACTTCAACACAGT 58.572 37.500 0.00 0.00 41.60 3.55
2619 2828 5.880332 ACAGACAATGTACTTCAACACAGTT 59.120 36.000 0.00 0.00 41.60 3.16
2620 2829 6.374333 ACAGACAATGTACTTCAACACAGTTT 59.626 34.615 0.00 0.00 41.60 2.66
2621 2830 7.094377 ACAGACAATGTACTTCAACACAGTTTT 60.094 33.333 0.00 0.00 41.60 2.43
2622 2831 7.754924 CAGACAATGTACTTCAACACAGTTTTT 59.245 33.333 0.00 0.00 30.75 1.94
2652 2861 3.139565 GGATGTACCTCCGGCCTC 58.860 66.667 0.00 0.00 35.41 4.70
2653 2862 1.457831 GGATGTACCTCCGGCCTCT 60.458 63.158 0.00 0.00 35.41 3.69
2654 2863 1.742768 GATGTACCTCCGGCCTCTG 59.257 63.158 0.00 0.00 0.00 3.35
2655 2864 2.370647 GATGTACCTCCGGCCTCTGC 62.371 65.000 0.00 0.00 0.00 4.26
2656 2865 3.075005 GTACCTCCGGCCTCTGCA 61.075 66.667 0.00 0.00 40.13 4.41
2657 2866 2.041922 TACCTCCGGCCTCTGCAT 60.042 61.111 0.00 0.00 40.13 3.96
2658 2867 2.134287 TACCTCCGGCCTCTGCATC 61.134 63.158 0.00 0.00 40.13 3.91
2659 2868 2.589610 TACCTCCGGCCTCTGCATCT 62.590 60.000 0.00 0.00 40.13 2.90
2660 2869 2.108566 CTCCGGCCTCTGCATCTG 59.891 66.667 0.00 0.00 40.13 2.90
2661 2870 3.457625 CTCCGGCCTCTGCATCTGG 62.458 68.421 0.00 0.00 40.13 3.86
2662 2871 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
2663 2872 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
2664 2873 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
2665 2874 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
2666 2875 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
2673 2882 2.697819 CATCTGGACGATGCATGCA 58.302 52.632 25.04 25.04 42.75 3.96
2674 2883 0.586802 CATCTGGACGATGCATGCAG 59.413 55.000 26.69 15.79 42.75 4.41
2675 2884 1.164662 ATCTGGACGATGCATGCAGC 61.165 55.000 25.69 25.69 45.96 5.25
2676 2885 2.825387 TGGACGATGCATGCAGCC 60.825 61.111 28.76 23.21 44.83 4.85
2677 2886 2.825387 GGACGATGCATGCAGCCA 60.825 61.111 28.76 3.84 44.83 4.75
2678 2887 2.191513 GGACGATGCATGCAGCCAT 61.192 57.895 28.76 18.07 44.83 4.40
2679 2888 0.886043 GGACGATGCATGCAGCCATA 60.886 55.000 28.76 2.58 44.83 2.74
2680 2889 1.162698 GACGATGCATGCAGCCATAT 58.837 50.000 28.76 12.89 44.83 1.78
2681 2890 1.538512 GACGATGCATGCAGCCATATT 59.461 47.619 28.76 9.02 44.83 1.28
2682 2891 2.743664 GACGATGCATGCAGCCATATTA 59.256 45.455 28.76 0.09 44.83 0.98
2683 2892 3.349927 ACGATGCATGCAGCCATATTAT 58.650 40.909 28.76 7.39 44.83 1.28
2684 2893 3.760151 ACGATGCATGCAGCCATATTATT 59.240 39.130 28.76 6.59 44.83 1.40
2685 2894 4.943093 ACGATGCATGCAGCCATATTATTA 59.057 37.500 28.76 0.00 44.83 0.98
2686 2895 5.415389 ACGATGCATGCAGCCATATTATTAA 59.585 36.000 28.76 0.00 44.83 1.40
2687 2896 6.095860 ACGATGCATGCAGCCATATTATTAAT 59.904 34.615 28.76 5.31 44.83 1.40
2688 2897 6.976349 CGATGCATGCAGCCATATTATTAATT 59.024 34.615 28.76 4.60 44.83 1.40
2689 2898 8.130469 CGATGCATGCAGCCATATTATTAATTA 58.870 33.333 28.76 0.00 44.83 1.40
2690 2899 9.976511 GATGCATGCAGCCATATTATTAATTAT 57.023 29.630 25.21 0.54 44.83 1.28
2692 2901 9.806203 TGCATGCAGCCATATTATTAATTATTC 57.194 29.630 18.46 0.00 44.83 1.75
2693 2902 9.806203 GCATGCAGCCATATTATTAATTATTCA 57.194 29.630 14.21 0.00 37.23 2.57
2710 2919 8.650143 AATTATTCACAAAGACCATACAAGGT 57.350 30.769 0.00 0.00 46.82 3.50
2711 2920 5.964958 ATTCACAAAGACCATACAAGGTG 57.035 39.130 0.00 0.00 43.38 4.00
2712 2921 4.698201 TCACAAAGACCATACAAGGTGA 57.302 40.909 0.00 0.00 43.38 4.02
2713 2922 5.241403 TCACAAAGACCATACAAGGTGAT 57.759 39.130 0.00 0.00 43.38 3.06
2714 2923 6.367374 TCACAAAGACCATACAAGGTGATA 57.633 37.500 0.00 0.00 43.38 2.15
2715 2924 6.170506 TCACAAAGACCATACAAGGTGATAC 58.829 40.000 0.00 0.00 43.38 2.24
2716 2925 5.937540 CACAAAGACCATACAAGGTGATACA 59.062 40.000 0.00 0.00 43.38 2.29
2717 2926 6.599244 CACAAAGACCATACAAGGTGATACAT 59.401 38.462 0.00 0.00 43.38 2.29
2718 2927 6.823689 ACAAAGACCATACAAGGTGATACATC 59.176 38.462 0.00 0.00 43.38 3.06
2719 2928 6.560003 AAGACCATACAAGGTGATACATCA 57.440 37.500 0.00 0.00 43.38 3.07
2720 2929 6.560003 AGACCATACAAGGTGATACATCAA 57.440 37.500 0.00 0.00 43.38 2.57
2721 2930 7.141758 AGACCATACAAGGTGATACATCAAT 57.858 36.000 0.00 0.00 43.38 2.57
2722 2931 8.262601 AGACCATACAAGGTGATACATCAATA 57.737 34.615 0.00 0.00 43.38 1.90
2723 2932 8.713971 AGACCATACAAGGTGATACATCAATAA 58.286 33.333 0.00 0.00 43.38 1.40
2724 2933 8.908786 ACCATACAAGGTGATACATCAATAAG 57.091 34.615 0.00 0.00 41.30 1.73
2725 2934 7.445402 ACCATACAAGGTGATACATCAATAAGC 59.555 37.037 0.00 0.00 41.30 3.09
2726 2935 7.094634 CCATACAAGGTGATACATCAATAAGCC 60.095 40.741 0.00 0.00 38.75 4.35
2727 2936 6.006275 ACAAGGTGATACATCAATAAGCCT 57.994 37.500 0.00 0.00 38.75 4.58
2728 2937 5.824624 ACAAGGTGATACATCAATAAGCCTG 59.175 40.000 0.00 0.00 38.75 4.85
2729 2938 5.894298 AGGTGATACATCAATAAGCCTGA 57.106 39.130 0.00 0.00 38.75 3.86
2730 2939 6.252599 AGGTGATACATCAATAAGCCTGAA 57.747 37.500 0.00 0.00 38.75 3.02
2731 2940 6.294473 AGGTGATACATCAATAAGCCTGAAG 58.706 40.000 0.00 0.00 38.75 3.02
2732 2941 5.049129 GGTGATACATCAATAAGCCTGAAGC 60.049 44.000 0.00 0.00 38.75 3.86
2733 2942 5.049129 GTGATACATCAATAAGCCTGAAGCC 60.049 44.000 0.00 0.00 39.72 4.35
2734 2943 3.370840 ACATCAATAAGCCTGAAGCCA 57.629 42.857 0.00 0.00 45.47 4.75
2735 2944 3.019564 ACATCAATAAGCCTGAAGCCAC 58.980 45.455 0.00 0.00 45.47 5.01
2736 2945 2.128771 TCAATAAGCCTGAAGCCACC 57.871 50.000 0.00 0.00 45.47 4.61
2737 2946 1.354031 TCAATAAGCCTGAAGCCACCA 59.646 47.619 0.00 0.00 45.47 4.17
2738 2947 2.025037 TCAATAAGCCTGAAGCCACCAT 60.025 45.455 0.00 0.00 45.47 3.55
2739 2948 2.355010 ATAAGCCTGAAGCCACCATC 57.645 50.000 0.00 0.00 45.47 3.51
2740 2949 1.289160 TAAGCCTGAAGCCACCATCT 58.711 50.000 0.00 0.00 45.47 2.90
2741 2950 0.407139 AAGCCTGAAGCCACCATCTT 59.593 50.000 0.00 0.00 45.47 2.40
2742 2951 0.323178 AGCCTGAAGCCACCATCTTG 60.323 55.000 0.00 0.00 45.47 3.02
2743 2952 0.322816 GCCTGAAGCCACCATCTTGA 60.323 55.000 0.00 0.00 34.35 3.02
2744 2953 1.457346 CCTGAAGCCACCATCTTGAC 58.543 55.000 0.00 0.00 0.00 3.18
2745 2954 1.271543 CCTGAAGCCACCATCTTGACA 60.272 52.381 0.00 0.00 0.00 3.58
2746 2955 2.507484 CTGAAGCCACCATCTTGACAA 58.493 47.619 0.00 0.00 0.00 3.18
2747 2956 2.227388 CTGAAGCCACCATCTTGACAAC 59.773 50.000 0.00 0.00 0.00 3.32
2748 2957 2.229792 GAAGCCACCATCTTGACAACA 58.770 47.619 0.00 0.00 0.00 3.33
2749 2958 2.592102 AGCCACCATCTTGACAACAT 57.408 45.000 0.00 0.00 0.00 2.71
2750 2959 2.440409 AGCCACCATCTTGACAACATC 58.560 47.619 0.00 0.00 0.00 3.06
2751 2960 1.131126 GCCACCATCTTGACAACATCG 59.869 52.381 0.00 0.00 0.00 3.84
2752 2961 2.426522 CCACCATCTTGACAACATCGT 58.573 47.619 0.00 0.00 0.00 3.73
2753 2962 2.813754 CCACCATCTTGACAACATCGTT 59.186 45.455 0.00 0.00 0.00 3.85
2754 2963 3.365264 CCACCATCTTGACAACATCGTTG 60.365 47.826 5.34 5.34 0.00 4.10
2755 2964 2.226437 ACCATCTTGACAACATCGTTGC 59.774 45.455 6.77 1.43 0.00 4.17
2756 2965 2.485426 CCATCTTGACAACATCGTTGCT 59.515 45.455 6.77 0.00 0.00 3.91
2757 2966 3.684305 CCATCTTGACAACATCGTTGCTA 59.316 43.478 6.77 0.00 0.00 3.49
2758 2967 4.436050 CCATCTTGACAACATCGTTGCTAC 60.436 45.833 6.77 0.00 0.00 3.58
2759 2968 3.990092 TCTTGACAACATCGTTGCTACT 58.010 40.909 6.77 0.00 0.00 2.57
2760 2969 3.987868 TCTTGACAACATCGTTGCTACTC 59.012 43.478 6.77 0.00 0.00 2.59
2761 2970 2.683968 TGACAACATCGTTGCTACTCC 58.316 47.619 6.77 0.00 0.00 3.85
2762 2971 2.299013 TGACAACATCGTTGCTACTCCT 59.701 45.455 6.77 0.00 0.00 3.69
2763 2972 3.508402 TGACAACATCGTTGCTACTCCTA 59.492 43.478 6.77 0.00 0.00 2.94
2764 2973 4.159693 TGACAACATCGTTGCTACTCCTAT 59.840 41.667 6.77 0.00 0.00 2.57
2765 2974 4.683832 ACAACATCGTTGCTACTCCTATC 58.316 43.478 6.77 0.00 0.00 2.08
2766 2975 4.051922 CAACATCGTTGCTACTCCTATCC 58.948 47.826 0.00 0.00 0.00 2.59
2767 2976 2.628657 ACATCGTTGCTACTCCTATCCC 59.371 50.000 0.00 0.00 0.00 3.85
2768 2977 1.700955 TCGTTGCTACTCCTATCCCC 58.299 55.000 0.00 0.00 0.00 4.81
2769 2978 1.217183 TCGTTGCTACTCCTATCCCCT 59.783 52.381 0.00 0.00 0.00 4.79
2770 2979 2.040178 CGTTGCTACTCCTATCCCCTT 58.960 52.381 0.00 0.00 0.00 3.95
2771 2980 2.224066 CGTTGCTACTCCTATCCCCTTG 60.224 54.545 0.00 0.00 0.00 3.61
2772 2981 3.039011 GTTGCTACTCCTATCCCCTTGA 58.961 50.000 0.00 0.00 0.00 3.02
2773 2982 3.637821 TGCTACTCCTATCCCCTTGAT 57.362 47.619 0.00 0.00 37.49 2.57
2774 2983 3.242867 TGCTACTCCTATCCCCTTGATG 58.757 50.000 0.00 0.00 34.76 3.07
2775 2984 2.027653 GCTACTCCTATCCCCTTGATGC 60.028 54.545 0.00 0.00 34.76 3.91
2776 2985 2.196742 ACTCCTATCCCCTTGATGCA 57.803 50.000 0.00 0.00 34.76 3.96
2777 2986 2.053244 ACTCCTATCCCCTTGATGCAG 58.947 52.381 0.00 0.00 34.76 4.41
2778 2987 1.350351 CTCCTATCCCCTTGATGCAGG 59.650 57.143 0.00 0.00 34.76 4.85
2779 2988 0.251077 CCTATCCCCTTGATGCAGGC 60.251 60.000 0.00 0.00 34.76 4.85
2780 2989 0.604780 CTATCCCCTTGATGCAGGCG 60.605 60.000 0.00 0.00 34.76 5.52
2781 2990 1.344953 TATCCCCTTGATGCAGGCGT 61.345 55.000 0.00 0.00 34.76 5.68
2782 2991 2.898920 ATCCCCTTGATGCAGGCGTG 62.899 60.000 1.01 1.01 31.69 5.34
2791 3000 3.420943 GCAGGCGTGCCGAATTAT 58.579 55.556 20.50 0.00 44.72 1.28
2792 3001 2.612200 GCAGGCGTGCCGAATTATA 58.388 52.632 20.50 0.00 44.72 0.98
2793 3002 0.941542 GCAGGCGTGCCGAATTATAA 59.058 50.000 20.50 0.00 44.72 0.98
2794 3003 1.333791 GCAGGCGTGCCGAATTATAAC 60.334 52.381 20.50 0.00 44.72 1.89
2795 3004 1.070843 CAGGCGTGCCGAATTATAACG 60.071 52.381 5.02 0.00 41.95 3.18
2797 3006 3.721466 CGTGCCGAATTATAACGCC 57.279 52.632 0.00 0.00 0.00 5.68
2798 3007 0.233848 CGTGCCGAATTATAACGCCC 59.766 55.000 0.00 0.00 0.00 6.13
2799 3008 1.589803 GTGCCGAATTATAACGCCCT 58.410 50.000 0.00 0.00 0.00 5.19
2800 3009 1.529865 GTGCCGAATTATAACGCCCTC 59.470 52.381 0.00 0.00 0.00 4.30
2801 3010 0.788391 GCCGAATTATAACGCCCTCG 59.212 55.000 0.00 0.00 42.43 4.63
2802 3011 1.603678 GCCGAATTATAACGCCCTCGA 60.604 52.381 0.00 0.00 39.41 4.04
2803 3012 2.929592 GCCGAATTATAACGCCCTCGAT 60.930 50.000 0.00 0.00 39.41 3.59
2804 3013 2.666508 CCGAATTATAACGCCCTCGATG 59.333 50.000 0.00 0.00 39.41 3.84
2805 3014 2.092211 CGAATTATAACGCCCTCGATGC 59.908 50.000 0.00 0.00 39.41 3.91
2812 3021 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
2813 3022 1.153745 GCCCTCGATGCGGCTATAG 60.154 63.158 10.26 0.00 42.21 1.31
2814 3023 1.153745 CCCTCGATGCGGCTATAGC 60.154 63.158 16.78 16.78 41.14 2.97
2815 3024 1.599606 CCCTCGATGCGGCTATAGCT 61.600 60.000 23.53 4.19 41.70 3.32
2816 3025 0.179150 CCTCGATGCGGCTATAGCTC 60.179 60.000 23.53 15.77 41.70 4.09
2817 3026 0.179150 CTCGATGCGGCTATAGCTCC 60.179 60.000 23.53 14.86 41.70 4.70
2818 3027 1.153745 CGATGCGGCTATAGCTCCC 60.154 63.158 23.53 12.57 41.70 4.30
2819 3028 1.877576 CGATGCGGCTATAGCTCCCA 61.878 60.000 23.53 17.22 41.70 4.37
2820 3029 0.390472 GATGCGGCTATAGCTCCCAC 60.390 60.000 23.53 6.29 41.70 4.61
2821 3030 2.049063 GCGGCTATAGCTCCCACG 60.049 66.667 23.53 18.20 41.70 4.94
2822 3031 2.857744 GCGGCTATAGCTCCCACGT 61.858 63.158 23.53 0.00 41.70 4.49
2823 3032 1.007271 CGGCTATAGCTCCCACGTG 60.007 63.158 23.53 9.08 41.70 4.49
2824 3033 1.735376 CGGCTATAGCTCCCACGTGT 61.735 60.000 23.53 0.00 41.70 4.49
2825 3034 0.032267 GGCTATAGCTCCCACGTGTC 59.968 60.000 23.53 0.00 41.70 3.67
2826 3035 0.317938 GCTATAGCTCCCACGTGTCG 60.318 60.000 17.75 4.04 38.21 4.35
2827 3036 1.306148 CTATAGCTCCCACGTGTCGA 58.694 55.000 15.65 8.55 0.00 4.20
2828 3037 1.264557 CTATAGCTCCCACGTGTCGAG 59.735 57.143 20.16 20.16 0.00 4.04
2829 3038 1.384989 ATAGCTCCCACGTGTCGAGG 61.385 60.000 23.66 14.89 37.35 4.63
2831 3040 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
2832 3041 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
2842 3051 3.545724 TCGAGGCACGACTTAGAGA 57.454 52.632 2.07 0.00 46.45 3.10
2843 3052 1.085091 TCGAGGCACGACTTAGAGAC 58.915 55.000 2.07 0.00 46.45 3.36
2844 3053 0.803117 CGAGGCACGACTTAGAGACA 59.197 55.000 0.00 0.00 45.77 3.41
2845 3054 1.402259 CGAGGCACGACTTAGAGACAT 59.598 52.381 0.00 0.00 45.77 3.06
2846 3055 2.612672 CGAGGCACGACTTAGAGACATA 59.387 50.000 0.00 0.00 45.77 2.29
2847 3056 3.064958 CGAGGCACGACTTAGAGACATAA 59.935 47.826 0.00 0.00 45.77 1.90
2848 3057 4.352887 GAGGCACGACTTAGAGACATAAC 58.647 47.826 0.00 0.00 0.00 1.89
2849 3058 3.130693 AGGCACGACTTAGAGACATAACC 59.869 47.826 0.00 0.00 0.00 2.85
2850 3059 3.106672 GCACGACTTAGAGACATAACCG 58.893 50.000 0.00 0.00 0.00 4.44
2851 3060 3.106672 CACGACTTAGAGACATAACCGC 58.893 50.000 0.00 0.00 0.00 5.68
2852 3061 2.751259 ACGACTTAGAGACATAACCGCA 59.249 45.455 0.00 0.00 0.00 5.69
2853 3062 3.380637 ACGACTTAGAGACATAACCGCAT 59.619 43.478 0.00 0.00 0.00 4.73
2854 3063 4.142227 ACGACTTAGAGACATAACCGCATT 60.142 41.667 0.00 0.00 0.00 3.56
2855 3064 4.207224 CGACTTAGAGACATAACCGCATTG 59.793 45.833 0.00 0.00 0.00 2.82
2856 3065 5.339008 ACTTAGAGACATAACCGCATTGA 57.661 39.130 0.00 0.00 0.00 2.57
2857 3066 5.730550 ACTTAGAGACATAACCGCATTGAA 58.269 37.500 0.00 0.00 0.00 2.69
2858 3067 6.170506 ACTTAGAGACATAACCGCATTGAAA 58.829 36.000 0.00 0.00 0.00 2.69
2859 3068 6.313905 ACTTAGAGACATAACCGCATTGAAAG 59.686 38.462 0.00 0.00 0.00 2.62
2860 3069 3.375299 AGAGACATAACCGCATTGAAAGC 59.625 43.478 0.00 0.00 0.00 3.51
2861 3070 3.081061 AGACATAACCGCATTGAAAGCA 58.919 40.909 0.00 0.00 0.00 3.91
2862 3071 3.505680 AGACATAACCGCATTGAAAGCAA 59.494 39.130 0.00 0.00 38.60 3.91
2863 3072 4.158394 AGACATAACCGCATTGAAAGCAAT 59.842 37.500 0.00 0.00 45.33 3.56
2872 3081 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
2873 3082 3.435105 TTGAAAGCAATGTCGCAAGTT 57.565 38.095 0.00 0.00 39.48 2.66
2874 3083 4.560136 TTGAAAGCAATGTCGCAAGTTA 57.440 36.364 0.00 0.00 39.48 2.24
2875 3084 4.145876 TGAAAGCAATGTCGCAAGTTAG 57.854 40.909 0.00 0.00 39.48 2.34
2876 3085 3.058293 TGAAAGCAATGTCGCAAGTTAGG 60.058 43.478 0.00 0.00 39.48 2.69
2877 3086 0.804989 AGCAATGTCGCAAGTTAGGC 59.195 50.000 0.00 0.00 39.48 3.93
2878 3087 0.521291 GCAATGTCGCAAGTTAGGCA 59.479 50.000 0.00 0.00 39.48 4.75
2879 3088 1.068610 GCAATGTCGCAAGTTAGGCAA 60.069 47.619 0.00 0.00 39.48 4.52
2880 3089 2.415893 GCAATGTCGCAAGTTAGGCAAT 60.416 45.455 0.00 0.00 39.48 3.56
2881 3090 3.429085 CAATGTCGCAAGTTAGGCAATC 58.571 45.455 0.00 0.00 39.48 2.67
2882 3091 2.177394 TGTCGCAAGTTAGGCAATCA 57.823 45.000 0.00 0.00 39.48 2.57
2883 3092 2.710377 TGTCGCAAGTTAGGCAATCAT 58.290 42.857 0.00 0.00 39.48 2.45
2884 3093 2.677836 TGTCGCAAGTTAGGCAATCATC 59.322 45.455 0.00 0.00 39.48 2.92
2885 3094 2.677836 GTCGCAAGTTAGGCAATCATCA 59.322 45.455 0.00 0.00 39.48 3.07
2886 3095 2.677836 TCGCAAGTTAGGCAATCATCAC 59.322 45.455 0.00 0.00 39.48 3.06
2887 3096 2.419673 CGCAAGTTAGGCAATCATCACA 59.580 45.455 0.00 0.00 0.00 3.58
2888 3097 3.119884 CGCAAGTTAGGCAATCATCACAA 60.120 43.478 0.00 0.00 0.00 3.33
2889 3098 4.615682 CGCAAGTTAGGCAATCATCACAAA 60.616 41.667 0.00 0.00 0.00 2.83
2890 3099 4.622740 GCAAGTTAGGCAATCATCACAAAC 59.377 41.667 0.00 0.00 0.00 2.93
2891 3100 5.771469 CAAGTTAGGCAATCATCACAAACA 58.229 37.500 0.00 0.00 0.00 2.83
2892 3101 6.392354 CAAGTTAGGCAATCATCACAAACAT 58.608 36.000 0.00 0.00 0.00 2.71
2893 3102 6.199937 AGTTAGGCAATCATCACAAACATC 57.800 37.500 0.00 0.00 0.00 3.06
2894 3103 5.126061 AGTTAGGCAATCATCACAAACATCC 59.874 40.000 0.00 0.00 0.00 3.51
2895 3104 2.762327 AGGCAATCATCACAAACATCCC 59.238 45.455 0.00 0.00 0.00 3.85
2896 3105 2.496871 GGCAATCATCACAAACATCCCA 59.503 45.455 0.00 0.00 0.00 4.37
2897 3106 3.133362 GGCAATCATCACAAACATCCCAT 59.867 43.478 0.00 0.00 0.00 4.00
2898 3107 4.116961 GCAATCATCACAAACATCCCATG 58.883 43.478 0.00 0.00 0.00 3.66
2900 3109 5.163530 GCAATCATCACAAACATCCCATGTA 60.164 40.000 0.00 0.00 44.07 2.29
2901 3110 6.627731 GCAATCATCACAAACATCCCATGTAA 60.628 38.462 0.00 0.00 44.07 2.41
2902 3111 5.895636 TCATCACAAACATCCCATGTAAC 57.104 39.130 0.00 0.00 44.07 2.50
2903 3112 5.320277 TCATCACAAACATCCCATGTAACA 58.680 37.500 0.00 0.00 44.07 2.41
2904 3113 5.772169 TCATCACAAACATCCCATGTAACAA 59.228 36.000 0.00 0.00 44.07 2.83
2905 3114 5.703978 TCACAAACATCCCATGTAACAAG 57.296 39.130 0.00 0.00 44.07 3.16
2906 3115 5.136828 TCACAAACATCCCATGTAACAAGT 58.863 37.500 0.00 0.00 44.07 3.16
2907 3116 6.299922 TCACAAACATCCCATGTAACAAGTA 58.700 36.000 0.00 0.00 44.07 2.24
2908 3117 6.773200 TCACAAACATCCCATGTAACAAGTAA 59.227 34.615 0.00 0.00 44.07 2.24
2909 3118 7.450014 TCACAAACATCCCATGTAACAAGTAAT 59.550 33.333 0.00 0.00 44.07 1.89
2910 3119 8.735315 CACAAACATCCCATGTAACAAGTAATA 58.265 33.333 0.00 0.00 44.07 0.98
2911 3120 9.303116 ACAAACATCCCATGTAACAAGTAATAA 57.697 29.630 0.00 0.00 44.07 1.40
2915 3124 8.966868 ACATCCCATGTAACAAGTAATAAAAGG 58.033 33.333 0.00 0.00 42.78 3.11
2916 3125 7.948034 TCCCATGTAACAAGTAATAAAAGGG 57.052 36.000 0.00 0.00 0.00 3.95
2917 3126 6.893005 TCCCATGTAACAAGTAATAAAAGGGG 59.107 38.462 0.00 0.00 0.00 4.79
2918 3127 6.893005 CCCATGTAACAAGTAATAAAAGGGGA 59.107 38.462 0.00 0.00 0.00 4.81
2919 3128 7.068226 CCCATGTAACAAGTAATAAAAGGGGAG 59.932 40.741 0.00 0.00 0.00 4.30
2920 3129 7.832187 CCATGTAACAAGTAATAAAAGGGGAGA 59.168 37.037 0.00 0.00 0.00 3.71
2921 3130 9.238368 CATGTAACAAGTAATAAAAGGGGAGAA 57.762 33.333 0.00 0.00 0.00 2.87
2922 3131 9.816787 ATGTAACAAGTAATAAAAGGGGAGAAA 57.183 29.630 0.00 0.00 0.00 2.52
2923 3132 9.070179 TGTAACAAGTAATAAAAGGGGAGAAAC 57.930 33.333 0.00 0.00 0.00 2.78
2924 3133 9.070179 GTAACAAGTAATAAAAGGGGAGAAACA 57.930 33.333 0.00 0.00 0.00 2.83
2925 3134 8.721133 AACAAGTAATAAAAGGGGAGAAACAT 57.279 30.769 0.00 0.00 0.00 2.71
2926 3135 9.816787 AACAAGTAATAAAAGGGGAGAAACATA 57.183 29.630 0.00 0.00 0.00 2.29
2927 3136 9.462606 ACAAGTAATAAAAGGGGAGAAACATAG 57.537 33.333 0.00 0.00 0.00 2.23
2928 3137 9.462606 CAAGTAATAAAAGGGGAGAAACATAGT 57.537 33.333 0.00 0.00 0.00 2.12
2930 3139 9.462606 AGTAATAAAAGGGGAGAAACATAGTTG 57.537 33.333 0.00 0.00 0.00 3.16
2931 3140 7.718334 AATAAAAGGGGAGAAACATAGTTGG 57.282 36.000 0.00 0.00 0.00 3.77
2932 3141 2.808906 AGGGGAGAAACATAGTTGGC 57.191 50.000 0.00 0.00 0.00 4.52
2933 3142 2.279173 AGGGGAGAAACATAGTTGGCT 58.721 47.619 0.00 0.00 0.00 4.75
2934 3143 2.649816 AGGGGAGAAACATAGTTGGCTT 59.350 45.455 0.00 0.00 0.00 4.35
2935 3144 3.850173 AGGGGAGAAACATAGTTGGCTTA 59.150 43.478 0.00 0.00 0.00 3.09
2936 3145 3.945921 GGGGAGAAACATAGTTGGCTTAC 59.054 47.826 0.00 0.00 0.00 2.34
2937 3146 4.566907 GGGGAGAAACATAGTTGGCTTACA 60.567 45.833 0.00 0.00 0.00 2.41
2938 3147 4.395231 GGGAGAAACATAGTTGGCTTACAC 59.605 45.833 0.00 0.00 0.00 2.90
2939 3148 5.246307 GGAGAAACATAGTTGGCTTACACT 58.754 41.667 0.00 0.00 0.00 3.55
2940 3149 5.351740 GGAGAAACATAGTTGGCTTACACTC 59.648 44.000 0.00 0.00 0.00 3.51
2941 3150 4.929808 AGAAACATAGTTGGCTTACACTCG 59.070 41.667 0.00 0.00 0.00 4.18
2942 3151 3.955650 ACATAGTTGGCTTACACTCGT 57.044 42.857 0.00 0.00 0.00 4.18
2943 3152 3.846360 ACATAGTTGGCTTACACTCGTC 58.154 45.455 0.00 0.00 0.00 4.20
2944 3153 3.257375 ACATAGTTGGCTTACACTCGTCA 59.743 43.478 0.00 0.00 0.00 4.35
2945 3154 2.150397 AGTTGGCTTACACTCGTCAC 57.850 50.000 0.00 0.00 0.00 3.67
2946 3155 0.782384 GTTGGCTTACACTCGTCACG 59.218 55.000 0.00 0.00 0.00 4.35
2947 3156 0.386476 TTGGCTTACACTCGTCACGT 59.614 50.000 0.00 0.00 0.00 4.49
2948 3157 0.039798 TGGCTTACACTCGTCACGTC 60.040 55.000 0.00 0.00 0.00 4.34
2949 3158 0.039798 GGCTTACACTCGTCACGTCA 60.040 55.000 0.00 0.00 0.00 4.35
2950 3159 1.050767 GCTTACACTCGTCACGTCAC 58.949 55.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.356124 AACACCAGTCTCCTCAGCAT 58.644 50.000 0.00 0.00 0.00 3.79
6 7 5.560722 TTTGATTAACACCAGTCTCCTCA 57.439 39.130 0.00 0.00 0.00 3.86
9 10 6.877611 TTCTTTTGATTAACACCAGTCTCC 57.122 37.500 0.00 0.00 0.00 3.71
53 54 6.909909 AGTTCGGCTAAAAATAAGGTTTCTG 58.090 36.000 0.00 0.00 0.00 3.02
56 57 6.859508 CGAAAGTTCGGCTAAAAATAAGGTTT 59.140 34.615 5.53 0.00 46.30 3.27
96 97 1.674962 AGCGGATACTCCACGTCTAAC 59.325 52.381 0.00 0.00 35.91 2.34
99 100 2.406205 GAGCGGATACTCCACGTCT 58.594 57.895 0.00 0.00 35.91 4.18
109 110 1.187974 TTTGAGTTCGGGAGCGGATA 58.812 50.000 0.00 0.00 0.00 2.59
113 114 1.021390 AGCATTTGAGTTCGGGAGCG 61.021 55.000 0.00 0.00 0.00 5.03
116 117 0.690192 TGGAGCATTTGAGTTCGGGA 59.310 50.000 0.00 0.00 0.00 5.14
122 123 4.338012 TGTTCATCATGGAGCATTTGAGT 58.662 39.130 0.00 0.00 0.00 3.41
187 188 9.869844 CATTTGTCAAAGTTTAACACACAAAAA 57.130 25.926 13.63 3.22 36.24 1.94
188 189 9.046296 ACATTTGTCAAAGTTTAACACACAAAA 57.954 25.926 13.63 2.84 36.24 2.44
192 193 9.312146 CAAAACATTTGTCAAAGTTTAACACAC 57.688 29.630 18.15 0.00 33.45 3.82
207 208 6.674694 TTTGCAAGCATACAAAACATTTGT 57.325 29.167 12.53 12.53 33.06 2.83
434 436 4.719026 ACTCATATGCACCCTGATGAAT 57.281 40.909 0.00 0.00 0.00 2.57
440 442 1.586422 CCGAACTCATATGCACCCTG 58.414 55.000 0.00 0.00 0.00 4.45
448 450 6.153680 GTCCTATTCTGATCCCGAACTCATAT 59.846 42.308 0.00 0.00 0.00 1.78
455 457 4.714802 TGAAAGTCCTATTCTGATCCCGAA 59.285 41.667 0.00 0.00 0.00 4.30
531 533 7.011499 TGTGGCTGGTAAAATCTCTAAGTAA 57.989 36.000 0.00 0.00 0.00 2.24
536 538 8.871629 TTTATTTGTGGCTGGTAAAATCTCTA 57.128 30.769 0.00 0.00 0.00 2.43
559 562 6.456449 GCGTTCGACTAAACCATCACATATTT 60.456 38.462 0.00 0.00 0.00 1.40
568 571 1.001633 ACCAGCGTTCGACTAAACCAT 59.998 47.619 0.00 0.00 0.00 3.55
701 705 9.877178 CAGTAGACAGATGGAACTAAAATTACT 57.123 33.333 0.00 0.00 0.00 2.24
743 750 8.265764 GGAGGGAGTACTAAAATGTTGTATTCT 58.734 37.037 0.00 0.00 0.00 2.40
919 1013 2.003548 GGATGAGGCTGGGGAAGGT 61.004 63.158 0.00 0.00 0.00 3.50
1329 1424 1.959226 GGAAAGGCAGCGTCAACGA 60.959 57.895 6.75 0.00 43.02 3.85
1331 1426 1.869690 GAGGAAAGGCAGCGTCAAC 59.130 57.895 0.00 0.00 0.00 3.18
1363 1462 5.054390 ACGTCTCAGATTCTCAAGTCTTC 57.946 43.478 0.00 0.00 0.00 2.87
1364 1463 4.082463 GGACGTCTCAGATTCTCAAGTCTT 60.082 45.833 16.46 0.00 0.00 3.01
1365 1464 3.442273 GGACGTCTCAGATTCTCAAGTCT 59.558 47.826 16.46 0.00 0.00 3.24
1405 1504 0.112412 AATGGCCTTTTCCACCGTCT 59.888 50.000 3.32 0.00 39.25 4.18
1441 1540 1.194547 CCGTGTCACATTTCTGTTCCG 59.805 52.381 3.42 0.00 31.62 4.30
1461 1560 5.786264 ATCAATCCAAATCCTGCAGAATC 57.214 39.130 17.39 0.00 0.00 2.52
1505 1631 6.615316 TCTGTCTGGACCCTTCATCATTATAA 59.385 38.462 0.00 0.00 0.00 0.98
1506 1632 6.042093 GTCTGTCTGGACCCTTCATCATTATA 59.958 42.308 0.00 0.00 0.00 0.98
1507 1633 4.971282 TCTGTCTGGACCCTTCATCATTAT 59.029 41.667 0.00 0.00 0.00 1.28
1508 1634 4.162320 GTCTGTCTGGACCCTTCATCATTA 59.838 45.833 0.00 0.00 0.00 1.90
1509 1635 3.054802 GTCTGTCTGGACCCTTCATCATT 60.055 47.826 0.00 0.00 0.00 2.57
1510 1636 2.503356 GTCTGTCTGGACCCTTCATCAT 59.497 50.000 0.00 0.00 0.00 2.45
1511 1637 1.902508 GTCTGTCTGGACCCTTCATCA 59.097 52.381 0.00 0.00 0.00 3.07
1512 1638 1.902508 TGTCTGTCTGGACCCTTCATC 59.097 52.381 0.00 0.00 35.54 2.92
1519 1645 2.213499 CAAACACTGTCTGTCTGGACC 58.787 52.381 0.00 0.00 35.54 4.46
1522 1648 1.942657 CCACAAACACTGTCTGTCTGG 59.057 52.381 0.00 0.00 35.47 3.86
1545 1671 2.288948 TGCACTTATTTGGCTTTGGCAG 60.289 45.455 0.00 0.00 39.75 4.85
1547 1673 2.340337 CTGCACTTATTTGGCTTTGGC 58.660 47.619 0.00 0.00 37.82 4.52
1548 1674 2.288948 TGCTGCACTTATTTGGCTTTGG 60.289 45.455 0.00 0.00 0.00 3.28
1549 1675 2.733026 GTGCTGCACTTATTTGGCTTTG 59.267 45.455 24.68 0.00 0.00 2.77
1550 1676 2.607771 CGTGCTGCACTTATTTGGCTTT 60.608 45.455 28.04 0.00 31.34 3.51
1551 1677 1.068333 CGTGCTGCACTTATTTGGCTT 60.068 47.619 28.04 0.00 31.34 4.35
1552 1678 0.523072 CGTGCTGCACTTATTTGGCT 59.477 50.000 28.04 0.00 31.34 4.75
1573 1699 6.926826 TCTATCACATTTGTACGTGTTCAAGT 59.073 34.615 0.00 0.00 34.66 3.16
1623 1750 1.304713 AGGCAGTGGGGCAATCAAG 60.305 57.895 0.00 0.00 46.44 3.02
1654 1781 5.852282 AACCACTAACAAAATTGTGCTCT 57.148 34.783 0.00 0.00 41.31 4.09
1662 1789 8.026607 CCAACGATATCAAACCACTAACAAAAT 58.973 33.333 3.12 0.00 0.00 1.82
1670 1797 3.992943 TCCCAACGATATCAAACCACT 57.007 42.857 3.12 0.00 0.00 4.00
1698 1854 8.970691 ATTTCTGAATTTTCGTTTCATGGTAG 57.029 30.769 0.00 0.00 32.94 3.18
1747 1927 2.742774 AGAAAAACATTTGTGAGCGGC 58.257 42.857 0.00 0.00 0.00 6.53
1766 1946 2.483877 TGAAGTTTGGTCGCTGCAATAG 59.516 45.455 0.00 0.00 0.00 1.73
1772 1952 2.290367 TGACAATGAAGTTTGGTCGCTG 59.710 45.455 0.00 0.00 0.00 5.18
1773 1953 2.571212 TGACAATGAAGTTTGGTCGCT 58.429 42.857 0.00 0.00 0.00 4.93
1774 1954 3.236816 CATGACAATGAAGTTTGGTCGC 58.763 45.455 0.00 0.00 35.67 5.19
1775 1955 4.214119 AGACATGACAATGAAGTTTGGTCG 59.786 41.667 0.00 0.00 37.24 4.79
1818 2018 5.158101 TGCAAAAACAAAATGACATGCAG 57.842 34.783 0.00 0.00 37.61 4.41
1832 2033 2.163412 TCCATCATACGCCTGCAAAAAC 59.837 45.455 0.00 0.00 0.00 2.43
1875 2076 1.077068 AGCCTCTGAGTCTCCCTCG 60.077 63.158 3.66 0.00 43.64 4.63
1991 2192 3.902881 AAGATCTCGAATTGCCAGAGT 57.097 42.857 0.00 0.00 33.96 3.24
2151 2354 4.434593 GCATTCGCAAAATGTGACAAATCC 60.435 41.667 9.75 0.00 36.51 3.01
2288 2495 6.500684 ACTTTCGATGTTCACATTGCTATT 57.499 33.333 2.60 0.00 37.60 1.73
2290 2497 5.940192 AACTTTCGATGTTCACATTGCTA 57.060 34.783 2.60 0.00 37.60 3.49
2445 2654 6.206634 TGAACTTTGTAGCAATGTTAAGAGGG 59.793 38.462 11.36 0.00 0.00 4.30
2548 2757 3.367703 GGATGAATTGGCTGGAACACAAG 60.368 47.826 0.00 0.00 28.08 3.16
2556 2765 3.431207 GGACATTTGGATGAATTGGCTGG 60.431 47.826 0.00 0.00 36.73 4.85
2574 2783 4.141505 TGTCTCTTTCCATCAGTTTGGACA 60.142 41.667 0.00 0.00 45.42 4.02
2643 2852 2.108566 CAGATGCAGAGGCCGGAG 59.891 66.667 5.05 0.00 40.13 4.63
2644 2853 3.473647 CCAGATGCAGAGGCCGGA 61.474 66.667 5.05 0.00 40.13 5.14
2645 2854 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
2646 2855 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
2647 2856 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
2648 2857 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
2656 2865 1.164662 GCTGCATGCATCGTCCAGAT 61.165 55.000 22.97 0.00 42.31 2.90
2657 2866 1.816679 GCTGCATGCATCGTCCAGA 60.817 57.895 22.97 0.00 42.31 3.86
2658 2867 2.713770 GCTGCATGCATCGTCCAG 59.286 61.111 22.97 8.76 42.31 3.86
2659 2868 2.825387 GGCTGCATGCATCGTCCA 60.825 61.111 22.97 0.00 45.15 4.02
2660 2869 0.886043 TATGGCTGCATGCATCGTCC 60.886 55.000 22.97 19.03 45.15 4.79
2661 2870 1.162698 ATATGGCTGCATGCATCGTC 58.837 50.000 22.97 13.00 45.15 4.20
2662 2871 1.612676 AATATGGCTGCATGCATCGT 58.387 45.000 22.97 19.00 45.15 3.73
2663 2872 4.365899 AATAATATGGCTGCATGCATCG 57.634 40.909 22.97 12.00 45.15 3.84
2664 2873 9.976511 ATAATTAATAATATGGCTGCATGCATC 57.023 29.630 22.97 17.75 45.15 3.91
2666 2875 9.806203 GAATAATTAATAATATGGCTGCATGCA 57.194 29.630 21.29 21.29 45.15 3.96
2667 2876 9.806203 TGAATAATTAATAATATGGCTGCATGC 57.194 29.630 11.82 11.82 41.94 4.06
2684 2893 9.747898 ACCTTGTATGGTCTTTGTGAATAATTA 57.252 29.630 0.00 0.00 34.86 1.40
2685 2894 8.522830 CACCTTGTATGGTCTTTGTGAATAATT 58.477 33.333 0.00 0.00 38.45 1.40
2686 2895 7.888021 TCACCTTGTATGGTCTTTGTGAATAAT 59.112 33.333 0.00 0.00 38.45 1.28
2687 2896 7.227873 TCACCTTGTATGGTCTTTGTGAATAA 58.772 34.615 0.00 0.00 38.45 1.40
2688 2897 6.774673 TCACCTTGTATGGTCTTTGTGAATA 58.225 36.000 0.00 0.00 38.45 1.75
2689 2898 5.630121 TCACCTTGTATGGTCTTTGTGAAT 58.370 37.500 0.00 0.00 38.45 2.57
2690 2899 5.042463 TCACCTTGTATGGTCTTTGTGAA 57.958 39.130 0.00 0.00 38.45 3.18
2691 2900 4.698201 TCACCTTGTATGGTCTTTGTGA 57.302 40.909 0.00 0.00 38.45 3.58
2692 2901 5.937540 TGTATCACCTTGTATGGTCTTTGTG 59.062 40.000 0.00 0.00 38.45 3.33
2693 2902 6.121776 TGTATCACCTTGTATGGTCTTTGT 57.878 37.500 0.00 0.00 38.45 2.83
2694 2903 6.823182 TGATGTATCACCTTGTATGGTCTTTG 59.177 38.462 0.00 0.00 38.45 2.77
2695 2904 6.957631 TGATGTATCACCTTGTATGGTCTTT 58.042 36.000 0.00 0.00 38.45 2.52
2696 2905 6.560003 TGATGTATCACCTTGTATGGTCTT 57.440 37.500 0.00 0.00 38.45 3.01
2697 2906 6.560003 TTGATGTATCACCTTGTATGGTCT 57.440 37.500 0.00 0.00 38.45 3.85
2698 2907 8.902540 TTATTGATGTATCACCTTGTATGGTC 57.097 34.615 0.00 0.00 38.45 4.02
2699 2908 7.445402 GCTTATTGATGTATCACCTTGTATGGT 59.555 37.037 0.00 0.00 41.77 3.55
2700 2909 7.094634 GGCTTATTGATGTATCACCTTGTATGG 60.095 40.741 0.00 0.00 36.36 2.74
2701 2910 7.663081 AGGCTTATTGATGTATCACCTTGTATG 59.337 37.037 0.00 0.00 36.36 2.39
2702 2911 7.663081 CAGGCTTATTGATGTATCACCTTGTAT 59.337 37.037 0.00 0.00 36.36 2.29
2703 2912 6.992123 CAGGCTTATTGATGTATCACCTTGTA 59.008 38.462 0.00 0.00 36.36 2.41
2704 2913 5.824624 CAGGCTTATTGATGTATCACCTTGT 59.175 40.000 0.00 0.00 36.36 3.16
2705 2914 6.057533 TCAGGCTTATTGATGTATCACCTTG 58.942 40.000 0.00 0.00 36.36 3.61
2706 2915 6.252599 TCAGGCTTATTGATGTATCACCTT 57.747 37.500 0.00 0.00 36.36 3.50
2707 2916 5.894298 TCAGGCTTATTGATGTATCACCT 57.106 39.130 0.00 0.00 36.36 4.00
2708 2917 5.049129 GCTTCAGGCTTATTGATGTATCACC 60.049 44.000 0.00 0.00 35.71 4.02
2709 2918 5.049129 GGCTTCAGGCTTATTGATGTATCAC 60.049 44.000 0.00 0.00 41.46 3.06
2710 2919 5.065914 GGCTTCAGGCTTATTGATGTATCA 58.934 41.667 0.00 0.00 41.46 2.15
2711 2920 5.049129 GTGGCTTCAGGCTTATTGATGTATC 60.049 44.000 1.64 0.00 41.69 2.24
2712 2921 4.823989 GTGGCTTCAGGCTTATTGATGTAT 59.176 41.667 1.64 0.00 41.69 2.29
2713 2922 4.199310 GTGGCTTCAGGCTTATTGATGTA 58.801 43.478 1.64 0.00 41.69 2.29
2714 2923 3.019564 GTGGCTTCAGGCTTATTGATGT 58.980 45.455 1.64 0.00 41.69 3.06
2715 2924 2.360165 GGTGGCTTCAGGCTTATTGATG 59.640 50.000 1.64 0.00 41.69 3.07
2716 2925 2.025037 TGGTGGCTTCAGGCTTATTGAT 60.025 45.455 1.64 0.00 41.69 2.57
2717 2926 1.354031 TGGTGGCTTCAGGCTTATTGA 59.646 47.619 1.64 0.00 41.69 2.57
2718 2927 1.838112 TGGTGGCTTCAGGCTTATTG 58.162 50.000 1.64 0.00 41.69 1.90
2719 2928 2.243221 AGATGGTGGCTTCAGGCTTATT 59.757 45.455 1.64 0.00 41.69 1.40
2720 2929 1.849039 AGATGGTGGCTTCAGGCTTAT 59.151 47.619 1.64 0.00 41.69 1.73
2721 2930 1.289160 AGATGGTGGCTTCAGGCTTA 58.711 50.000 1.64 0.00 41.69 3.09
2722 2931 0.407139 AAGATGGTGGCTTCAGGCTT 59.593 50.000 1.64 0.00 41.69 4.35
2723 2932 0.323178 CAAGATGGTGGCTTCAGGCT 60.323 55.000 1.64 0.00 41.69 4.58
2724 2933 0.322816 TCAAGATGGTGGCTTCAGGC 60.323 55.000 0.00 0.00 41.50 4.85
2725 2934 1.271543 TGTCAAGATGGTGGCTTCAGG 60.272 52.381 0.00 0.00 0.00 3.86
2726 2935 2.189594 TGTCAAGATGGTGGCTTCAG 57.810 50.000 0.00 0.00 0.00 3.02
2727 2936 2.229792 GTTGTCAAGATGGTGGCTTCA 58.770 47.619 0.00 0.00 0.00 3.02
2728 2937 2.229792 TGTTGTCAAGATGGTGGCTTC 58.770 47.619 0.00 0.00 0.00 3.86
2729 2938 2.363306 TGTTGTCAAGATGGTGGCTT 57.637 45.000 0.00 0.00 0.00 4.35
2730 2939 2.440409 GATGTTGTCAAGATGGTGGCT 58.560 47.619 0.00 0.00 0.00 4.75
2731 2940 1.131126 CGATGTTGTCAAGATGGTGGC 59.869 52.381 0.00 0.00 0.00 5.01
2732 2941 2.426522 ACGATGTTGTCAAGATGGTGG 58.573 47.619 9.18 0.00 0.00 4.61
2733 2942 3.813800 CAACGATGTTGTCAAGATGGTG 58.186 45.455 10.48 4.14 0.00 4.17
2734 2943 2.226437 GCAACGATGTTGTCAAGATGGT 59.774 45.455 10.96 4.76 0.00 3.55
2735 2944 2.485426 AGCAACGATGTTGTCAAGATGG 59.515 45.455 10.96 1.53 0.00 3.51
2736 2945 3.818961 AGCAACGATGTTGTCAAGATG 57.181 42.857 10.96 0.00 0.00 2.90
2737 2946 4.569943 AGTAGCAACGATGTTGTCAAGAT 58.430 39.130 10.96 0.00 0.00 2.40
2738 2947 3.987868 GAGTAGCAACGATGTTGTCAAGA 59.012 43.478 10.96 0.00 0.00 3.02
2739 2948 3.123621 GGAGTAGCAACGATGTTGTCAAG 59.876 47.826 10.96 0.00 0.00 3.02
2740 2949 3.064207 GGAGTAGCAACGATGTTGTCAA 58.936 45.455 10.96 0.00 0.00 3.18
2741 2950 2.299013 AGGAGTAGCAACGATGTTGTCA 59.701 45.455 10.96 0.00 0.00 3.58
2742 2951 2.960819 AGGAGTAGCAACGATGTTGTC 58.039 47.619 10.96 4.28 0.00 3.18
2743 2952 4.441634 GGATAGGAGTAGCAACGATGTTGT 60.442 45.833 10.96 1.85 0.00 3.32
2744 2953 4.051922 GGATAGGAGTAGCAACGATGTTG 58.948 47.826 5.34 5.34 0.00 3.33
2745 2954 3.069729 GGGATAGGAGTAGCAACGATGTT 59.930 47.826 0.00 0.00 0.00 2.71
2746 2955 2.628657 GGGATAGGAGTAGCAACGATGT 59.371 50.000 0.00 0.00 0.00 3.06
2747 2956 2.028930 GGGGATAGGAGTAGCAACGATG 60.029 54.545 0.00 0.00 0.00 3.84
2748 2957 2.158295 AGGGGATAGGAGTAGCAACGAT 60.158 50.000 0.00 0.00 0.00 3.73
2749 2958 1.217183 AGGGGATAGGAGTAGCAACGA 59.783 52.381 0.00 0.00 0.00 3.85
2750 2959 1.705873 AGGGGATAGGAGTAGCAACG 58.294 55.000 0.00 0.00 0.00 4.10
2751 2960 3.039011 TCAAGGGGATAGGAGTAGCAAC 58.961 50.000 0.00 0.00 0.00 4.17
2752 2961 3.414759 TCAAGGGGATAGGAGTAGCAA 57.585 47.619 0.00 0.00 0.00 3.91
2753 2962 3.242867 CATCAAGGGGATAGGAGTAGCA 58.757 50.000 0.00 0.00 33.95 3.49
2754 2963 2.027653 GCATCAAGGGGATAGGAGTAGC 60.028 54.545 0.00 0.00 33.95 3.58
2755 2964 3.242867 TGCATCAAGGGGATAGGAGTAG 58.757 50.000 0.00 0.00 33.95 2.57
2756 2965 3.242867 CTGCATCAAGGGGATAGGAGTA 58.757 50.000 0.00 0.00 33.95 2.59
2757 2966 2.053244 CTGCATCAAGGGGATAGGAGT 58.947 52.381 0.00 0.00 33.95 3.85
2758 2967 1.350351 CCTGCATCAAGGGGATAGGAG 59.650 57.143 0.00 0.00 34.78 3.69
2759 2968 1.438469 CCTGCATCAAGGGGATAGGA 58.562 55.000 0.00 0.00 34.78 2.94
2760 2969 0.251077 GCCTGCATCAAGGGGATAGG 60.251 60.000 0.00 0.00 37.84 2.57
2761 2970 3.336122 GCCTGCATCAAGGGGATAG 57.664 57.895 0.00 0.00 37.84 2.08
2766 2975 3.818787 GCACGCCTGCATCAAGGG 61.819 66.667 2.56 0.00 43.62 3.95
2767 2976 3.818787 GGCACGCCTGCATCAAGG 61.819 66.667 9.92 0.00 46.28 3.61
2783 2992 2.427232 TCGAGGGCGTTATAATTCGG 57.573 50.000 0.00 0.00 38.98 4.30
2784 2993 2.092211 GCATCGAGGGCGTTATAATTCG 59.908 50.000 0.00 0.00 38.98 3.34
2785 2994 3.724295 GCATCGAGGGCGTTATAATTC 57.276 47.619 0.00 0.00 38.98 2.17
2796 3005 1.153745 GCTATAGCCGCATCGAGGG 60.154 63.158 14.13 0.00 34.31 4.30
2797 3006 0.179150 GAGCTATAGCCGCATCGAGG 60.179 60.000 21.17 0.00 43.38 4.63
2798 3007 0.179150 GGAGCTATAGCCGCATCGAG 60.179 60.000 21.17 0.00 43.38 4.04
2799 3008 1.595993 GGGAGCTATAGCCGCATCGA 61.596 60.000 21.17 0.00 43.38 3.59
2800 3009 1.153745 GGGAGCTATAGCCGCATCG 60.154 63.158 21.17 0.00 43.38 3.84
2801 3010 0.390472 GTGGGAGCTATAGCCGCATC 60.390 60.000 24.89 15.99 43.38 3.91
2802 3011 1.674057 GTGGGAGCTATAGCCGCAT 59.326 57.895 24.89 9.43 43.38 4.73
2803 3012 2.856628 CGTGGGAGCTATAGCCGCA 61.857 63.158 21.17 21.10 43.38 5.69
2804 3013 2.049063 CGTGGGAGCTATAGCCGC 60.049 66.667 21.17 19.02 43.38 6.53
2805 3014 1.007271 CACGTGGGAGCTATAGCCG 60.007 63.158 21.17 18.10 43.38 5.52
2806 3015 0.032267 GACACGTGGGAGCTATAGCC 59.968 60.000 21.17 12.26 43.38 3.93
2807 3016 0.317938 CGACACGTGGGAGCTATAGC 60.318 60.000 21.57 17.33 42.49 2.97
2808 3017 1.264557 CTCGACACGTGGGAGCTATAG 59.735 57.143 21.57 0.00 0.00 1.31
2809 3018 1.306148 CTCGACACGTGGGAGCTATA 58.694 55.000 21.57 0.00 0.00 1.31
2810 3019 1.384989 CCTCGACACGTGGGAGCTAT 61.385 60.000 25.04 3.08 36.95 2.97
2811 3020 2.044555 CCTCGACACGTGGGAGCTA 61.045 63.158 25.04 4.72 36.95 3.32
2812 3021 3.374402 CCTCGACACGTGGGAGCT 61.374 66.667 25.04 4.48 36.95 4.09
2814 3023 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
2815 3024 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
2824 3033 1.085091 GTCTCTAAGTCGTGCCTCGA 58.915 55.000 0.00 0.00 46.83 4.04
2825 3034 0.803117 TGTCTCTAAGTCGTGCCTCG 59.197 55.000 0.00 0.00 41.41 4.63
2826 3035 4.352887 GTTATGTCTCTAAGTCGTGCCTC 58.647 47.826 0.00 0.00 0.00 4.70
2827 3036 3.130693 GGTTATGTCTCTAAGTCGTGCCT 59.869 47.826 0.00 0.00 0.00 4.75
2828 3037 3.445857 GGTTATGTCTCTAAGTCGTGCC 58.554 50.000 0.00 0.00 0.00 5.01
2829 3038 3.106672 CGGTTATGTCTCTAAGTCGTGC 58.893 50.000 0.00 0.00 0.00 5.34
2830 3039 3.106672 GCGGTTATGTCTCTAAGTCGTG 58.893 50.000 0.00 0.00 0.00 4.35
2831 3040 2.751259 TGCGGTTATGTCTCTAAGTCGT 59.249 45.455 0.00 0.00 0.00 4.34
2832 3041 3.416119 TGCGGTTATGTCTCTAAGTCG 57.584 47.619 0.00 0.00 0.00 4.18
2833 3042 5.348986 TCAATGCGGTTATGTCTCTAAGTC 58.651 41.667 0.00 0.00 0.00 3.01
2834 3043 5.339008 TCAATGCGGTTATGTCTCTAAGT 57.661 39.130 0.00 0.00 0.00 2.24
2835 3044 6.662414 TTTCAATGCGGTTATGTCTCTAAG 57.338 37.500 0.00 0.00 0.00 2.18
2836 3045 5.064707 GCTTTCAATGCGGTTATGTCTCTAA 59.935 40.000 0.00 0.00 0.00 2.10
2837 3046 4.570772 GCTTTCAATGCGGTTATGTCTCTA 59.429 41.667 0.00 0.00 0.00 2.43
2838 3047 3.375299 GCTTTCAATGCGGTTATGTCTCT 59.625 43.478 0.00 0.00 0.00 3.10
2839 3048 3.126858 TGCTTTCAATGCGGTTATGTCTC 59.873 43.478 0.00 0.00 0.00 3.36
2840 3049 3.081061 TGCTTTCAATGCGGTTATGTCT 58.919 40.909 0.00 0.00 0.00 3.41
2841 3050 3.485947 TGCTTTCAATGCGGTTATGTC 57.514 42.857 0.00 0.00 0.00 3.06
2842 3051 3.932545 TTGCTTTCAATGCGGTTATGT 57.067 38.095 0.00 0.00 0.00 2.29
2852 3061 3.648339 ACTTGCGACATTGCTTTCAAT 57.352 38.095 0.00 0.00 43.31 2.57
2853 3062 3.435105 AACTTGCGACATTGCTTTCAA 57.565 38.095 0.00 0.00 36.51 2.69
2854 3063 3.058293 CCTAACTTGCGACATTGCTTTCA 60.058 43.478 0.00 0.00 35.36 2.69
2855 3064 3.492313 CCTAACTTGCGACATTGCTTTC 58.508 45.455 0.00 0.00 35.36 2.62
2856 3065 2.351738 GCCTAACTTGCGACATTGCTTT 60.352 45.455 0.00 0.00 35.36 3.51
2857 3066 1.200020 GCCTAACTTGCGACATTGCTT 59.800 47.619 0.00 0.00 35.36 3.91
2858 3067 0.804989 GCCTAACTTGCGACATTGCT 59.195 50.000 0.00 0.00 35.36 3.91
2859 3068 0.521291 TGCCTAACTTGCGACATTGC 59.479 50.000 0.00 0.00 0.00 3.56
2860 3069 2.987413 TTGCCTAACTTGCGACATTG 57.013 45.000 0.00 0.00 0.00 2.82
2861 3070 3.081061 TGATTGCCTAACTTGCGACATT 58.919 40.909 0.00 0.00 0.00 2.71
2862 3071 2.710377 TGATTGCCTAACTTGCGACAT 58.290 42.857 0.00 0.00 0.00 3.06
2863 3072 2.177394 TGATTGCCTAACTTGCGACA 57.823 45.000 0.00 0.00 0.00 4.35
2864 3073 2.677836 TGATGATTGCCTAACTTGCGAC 59.322 45.455 0.00 0.00 0.00 5.19
2865 3074 2.677836 GTGATGATTGCCTAACTTGCGA 59.322 45.455 0.00 0.00 0.00 5.10
2866 3075 2.419673 TGTGATGATTGCCTAACTTGCG 59.580 45.455 0.00 0.00 0.00 4.85
2867 3076 4.439305 TTGTGATGATTGCCTAACTTGC 57.561 40.909 0.00 0.00 0.00 4.01
2868 3077 5.771469 TGTTTGTGATGATTGCCTAACTTG 58.229 37.500 0.00 0.00 0.00 3.16
2869 3078 6.350445 GGATGTTTGTGATGATTGCCTAACTT 60.350 38.462 0.00 0.00 0.00 2.66
2870 3079 5.126061 GGATGTTTGTGATGATTGCCTAACT 59.874 40.000 0.00 0.00 0.00 2.24
2871 3080 5.343249 GGATGTTTGTGATGATTGCCTAAC 58.657 41.667 0.00 0.00 0.00 2.34
2872 3081 4.402155 GGGATGTTTGTGATGATTGCCTAA 59.598 41.667 0.00 0.00 0.00 2.69
2873 3082 3.953612 GGGATGTTTGTGATGATTGCCTA 59.046 43.478 0.00 0.00 0.00 3.93
2874 3083 2.762327 GGGATGTTTGTGATGATTGCCT 59.238 45.455 0.00 0.00 0.00 4.75
2875 3084 2.496871 TGGGATGTTTGTGATGATTGCC 59.503 45.455 0.00 0.00 0.00 4.52
2876 3085 3.872511 TGGGATGTTTGTGATGATTGC 57.127 42.857 0.00 0.00 0.00 3.56
2877 3086 5.333299 ACATGGGATGTTTGTGATGATTG 57.667 39.130 0.00 0.00 41.63 2.67
2878 3087 6.436847 TGTTACATGGGATGTTTGTGATGATT 59.563 34.615 0.00 0.00 41.63 2.57
2879 3088 5.951148 TGTTACATGGGATGTTTGTGATGAT 59.049 36.000 0.00 0.00 41.63 2.45
2880 3089 5.320277 TGTTACATGGGATGTTTGTGATGA 58.680 37.500 0.00 0.00 41.63 2.92
2881 3090 5.641783 TGTTACATGGGATGTTTGTGATG 57.358 39.130 0.00 0.00 41.63 3.07
2882 3091 5.774690 ACTTGTTACATGGGATGTTTGTGAT 59.225 36.000 0.00 0.00 41.63 3.06
2883 3092 5.136828 ACTTGTTACATGGGATGTTTGTGA 58.863 37.500 0.00 0.00 41.63 3.58
2884 3093 5.452078 ACTTGTTACATGGGATGTTTGTG 57.548 39.130 0.00 0.00 41.63 3.33
2885 3094 7.775053 ATTACTTGTTACATGGGATGTTTGT 57.225 32.000 0.00 0.00 41.63 2.83
2889 3098 8.966868 CCTTTTATTACTTGTTACATGGGATGT 58.033 33.333 0.00 0.00 46.92 3.06
2890 3099 8.413229 CCCTTTTATTACTTGTTACATGGGATG 58.587 37.037 0.00 0.00 0.00 3.51
2891 3100 7.563556 CCCCTTTTATTACTTGTTACATGGGAT 59.436 37.037 0.00 0.00 0.00 3.85
2892 3101 6.893005 CCCCTTTTATTACTTGTTACATGGGA 59.107 38.462 0.00 0.00 0.00 4.37
2893 3102 6.893005 TCCCCTTTTATTACTTGTTACATGGG 59.107 38.462 0.00 0.00 0.00 4.00
2894 3103 7.832187 TCTCCCCTTTTATTACTTGTTACATGG 59.168 37.037 0.00 0.00 0.00 3.66
2895 3104 8.801882 TCTCCCCTTTTATTACTTGTTACATG 57.198 34.615 0.00 0.00 0.00 3.21
2896 3105 9.816787 TTTCTCCCCTTTTATTACTTGTTACAT 57.183 29.630 0.00 0.00 0.00 2.29
2897 3106 9.070179 GTTTCTCCCCTTTTATTACTTGTTACA 57.930 33.333 0.00 0.00 0.00 2.41
2898 3107 9.070179 TGTTTCTCCCCTTTTATTACTTGTTAC 57.930 33.333 0.00 0.00 0.00 2.50
2899 3108 9.816787 ATGTTTCTCCCCTTTTATTACTTGTTA 57.183 29.630 0.00 0.00 0.00 2.41
2900 3109 8.721133 ATGTTTCTCCCCTTTTATTACTTGTT 57.279 30.769 0.00 0.00 0.00 2.83
2901 3110 9.462606 CTATGTTTCTCCCCTTTTATTACTTGT 57.537 33.333 0.00 0.00 0.00 3.16
2902 3111 9.462606 ACTATGTTTCTCCCCTTTTATTACTTG 57.537 33.333 0.00 0.00 0.00 3.16
2904 3113 9.462606 CAACTATGTTTCTCCCCTTTTATTACT 57.537 33.333 0.00 0.00 0.00 2.24
2905 3114 8.683615 CCAACTATGTTTCTCCCCTTTTATTAC 58.316 37.037 0.00 0.00 0.00 1.89
2906 3115 7.340999 GCCAACTATGTTTCTCCCCTTTTATTA 59.659 37.037 0.00 0.00 0.00 0.98
2907 3116 6.154534 GCCAACTATGTTTCTCCCCTTTTATT 59.845 38.462 0.00 0.00 0.00 1.40
2908 3117 5.656859 GCCAACTATGTTTCTCCCCTTTTAT 59.343 40.000 0.00 0.00 0.00 1.40
2909 3118 5.014202 GCCAACTATGTTTCTCCCCTTTTA 58.986 41.667 0.00 0.00 0.00 1.52
2910 3119 3.832490 GCCAACTATGTTTCTCCCCTTTT 59.168 43.478 0.00 0.00 0.00 2.27
2911 3120 3.076032 AGCCAACTATGTTTCTCCCCTTT 59.924 43.478 0.00 0.00 0.00 3.11
2912 3121 2.649816 AGCCAACTATGTTTCTCCCCTT 59.350 45.455 0.00 0.00 0.00 3.95
2913 3122 2.279173 AGCCAACTATGTTTCTCCCCT 58.721 47.619 0.00 0.00 0.00 4.79
2914 3123 2.808906 AGCCAACTATGTTTCTCCCC 57.191 50.000 0.00 0.00 0.00 4.81
2915 3124 4.395231 GTGTAAGCCAACTATGTTTCTCCC 59.605 45.833 0.00 0.00 0.00 4.30
2916 3125 5.246307 AGTGTAAGCCAACTATGTTTCTCC 58.754 41.667 0.00 0.00 0.00 3.71
2917 3126 5.062308 CGAGTGTAAGCCAACTATGTTTCTC 59.938 44.000 0.00 0.00 0.00 2.87
2918 3127 4.929808 CGAGTGTAAGCCAACTATGTTTCT 59.070 41.667 0.00 0.00 0.00 2.52
2919 3128 4.689345 ACGAGTGTAAGCCAACTATGTTTC 59.311 41.667 0.00 0.00 0.00 2.78
2920 3129 4.638304 ACGAGTGTAAGCCAACTATGTTT 58.362 39.130 0.00 0.00 0.00 2.83
2921 3130 4.243270 GACGAGTGTAAGCCAACTATGTT 58.757 43.478 0.00 0.00 0.00 2.71
2922 3131 3.257375 TGACGAGTGTAAGCCAACTATGT 59.743 43.478 0.00 0.00 0.00 2.29
2923 3132 3.612860 GTGACGAGTGTAAGCCAACTATG 59.387 47.826 0.00 0.00 0.00 2.23
2924 3133 3.672511 CGTGACGAGTGTAAGCCAACTAT 60.673 47.826 0.00 0.00 0.00 2.12
2925 3134 2.351060 CGTGACGAGTGTAAGCCAACTA 60.351 50.000 0.00 0.00 0.00 2.24
2926 3135 1.602165 CGTGACGAGTGTAAGCCAACT 60.602 52.381 0.00 0.00 0.00 3.16
2927 3136 0.782384 CGTGACGAGTGTAAGCCAAC 59.218 55.000 0.00 0.00 0.00 3.77
2928 3137 0.386476 ACGTGACGAGTGTAAGCCAA 59.614 50.000 13.70 0.00 0.00 4.52
2929 3138 0.039798 GACGTGACGAGTGTAAGCCA 60.040 55.000 13.70 0.00 0.00 4.75
2930 3139 0.039798 TGACGTGACGAGTGTAAGCC 60.040 55.000 13.70 0.00 0.00 4.35
2931 3140 1.050767 GTGACGTGACGAGTGTAAGC 58.949 55.000 13.70 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.