Multiple sequence alignment - TraesCS6A01G172700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G172700 chr6A 100.000 2459 0 0 1 2459 184394189 184396647 0.000000e+00 4542
1 TraesCS6A01G172700 chr6A 85.866 283 32 7 183 464 579129778 579130053 6.650000e-76 294
2 TraesCS6A01G172700 chr4A 92.122 1244 84 5 183 1414 45153829 45155070 0.000000e+00 1742
3 TraesCS6A01G172700 chr4A 89.608 587 44 4 1576 2162 45207490 45208059 0.000000e+00 730
4 TraesCS6A01G172700 chr3D 91.252 1246 86 11 183 1414 437820010 437821246 0.000000e+00 1676
5 TraesCS6A01G172700 chr3D 92.342 666 41 7 1500 2162 365034732 365035390 0.000000e+00 939
6 TraesCS6A01G172700 chr3D 88.953 688 58 7 1476 2162 428600563 428599893 0.000000e+00 833
7 TraesCS6A01G172700 chr3D 86.111 288 36 4 183 468 601117363 601117078 8.540000e-80 307
8 TraesCS6A01G172700 chr3D 87.179 273 28 6 183 454 124069449 124069715 1.100000e-78 303
9 TraesCS6A01G172700 chr3D 84.385 301 42 5 183 483 397774177 397773882 8.600000e-75 291
10 TraesCS6A01G172700 chr5D 89.410 1237 95 14 183 1406 557771076 557769863 0.000000e+00 1526
11 TraesCS6A01G172700 chr5D 91.733 750 48 5 1419 2168 425018993 425018258 0.000000e+00 1029
12 TraesCS6A01G172700 chr5D 87.454 271 28 5 183 452 497306138 497305873 8.540000e-80 307
13 TraesCS6A01G172700 chr5A 88.943 1230 119 13 183 1406 170085287 170086505 0.000000e+00 1502
14 TraesCS6A01G172700 chr3A 88.221 1231 113 18 183 1406 726487957 726486752 0.000000e+00 1441
15 TraesCS6A01G172700 chr2D 95.703 861 34 2 557 1414 35521485 35520625 0.000000e+00 1382
16 TraesCS6A01G172700 chr2D 87.744 1126 117 16 183 1305 243146770 243145663 0.000000e+00 1295
17 TraesCS6A01G172700 chr2D 91.287 769 46 6 1419 2166 443130471 443129703 0.000000e+00 1029
18 TraesCS6A01G172700 chr2D 91.757 740 49 3 1426 2165 480757857 480757130 0.000000e+00 1018
19 TraesCS6A01G172700 chr2D 85.220 318 38 8 183 493 458741512 458741197 3.950000e-83 318
20 TraesCS6A01G172700 chr2D 89.831 236 23 1 1927 2162 182379700 182379466 3.970000e-78 302
21 TraesCS6A01G172700 chr6D 94.585 868 45 1 549 1414 131698883 131698016 0.000000e+00 1341
22 TraesCS6A01G172700 chr6D 91.455 749 38 6 1412 2160 397362798 397363520 0.000000e+00 1005
23 TraesCS6A01G172700 chr1D 91.819 929 71 4 480 1406 493699037 493699962 0.000000e+00 1290
24 TraesCS6A01G172700 chr1D 90.533 750 55 6 1420 2169 458884972 458884239 0.000000e+00 977
25 TraesCS6A01G172700 chr1B 93.725 749 47 0 1414 2162 371505828 371506576 0.000000e+00 1123
26 TraesCS6A01G172700 chr7A 91.812 745 44 5 1419 2162 78105702 78106430 0.000000e+00 1022
27 TraesCS6A01G172700 chr7D 88.731 772 55 7 1419 2169 105200580 105199820 0.000000e+00 915
28 TraesCS6A01G172700 chr4D 83.951 324 39 6 184 501 94418221 94417905 5.140000e-77 298
29 TraesCS6A01G172700 chr5B 89.714 175 17 1 1989 2162 6261396 6261570 3.180000e-54 222
30 TraesCS6A01G172700 chr3B 89.595 173 18 0 1990 2162 503034293 503034465 1.140000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G172700 chr6A 184394189 184396647 2458 False 4542 4542 100.000 1 2459 1 chr6A.!!$F1 2458
1 TraesCS6A01G172700 chr4A 45153829 45155070 1241 False 1742 1742 92.122 183 1414 1 chr4A.!!$F1 1231
2 TraesCS6A01G172700 chr4A 45207490 45208059 569 False 730 730 89.608 1576 2162 1 chr4A.!!$F2 586
3 TraesCS6A01G172700 chr3D 437820010 437821246 1236 False 1676 1676 91.252 183 1414 1 chr3D.!!$F3 1231
4 TraesCS6A01G172700 chr3D 365034732 365035390 658 False 939 939 92.342 1500 2162 1 chr3D.!!$F2 662
5 TraesCS6A01G172700 chr3D 428599893 428600563 670 True 833 833 88.953 1476 2162 1 chr3D.!!$R2 686
6 TraesCS6A01G172700 chr5D 557769863 557771076 1213 True 1526 1526 89.410 183 1406 1 chr5D.!!$R3 1223
7 TraesCS6A01G172700 chr5D 425018258 425018993 735 True 1029 1029 91.733 1419 2168 1 chr5D.!!$R1 749
8 TraesCS6A01G172700 chr5A 170085287 170086505 1218 False 1502 1502 88.943 183 1406 1 chr5A.!!$F1 1223
9 TraesCS6A01G172700 chr3A 726486752 726487957 1205 True 1441 1441 88.221 183 1406 1 chr3A.!!$R1 1223
10 TraesCS6A01G172700 chr2D 35520625 35521485 860 True 1382 1382 95.703 557 1414 1 chr2D.!!$R1 857
11 TraesCS6A01G172700 chr2D 243145663 243146770 1107 True 1295 1295 87.744 183 1305 1 chr2D.!!$R3 1122
12 TraesCS6A01G172700 chr2D 443129703 443130471 768 True 1029 1029 91.287 1419 2166 1 chr2D.!!$R4 747
13 TraesCS6A01G172700 chr2D 480757130 480757857 727 True 1018 1018 91.757 1426 2165 1 chr2D.!!$R6 739
14 TraesCS6A01G172700 chr6D 131698016 131698883 867 True 1341 1341 94.585 549 1414 1 chr6D.!!$R1 865
15 TraesCS6A01G172700 chr6D 397362798 397363520 722 False 1005 1005 91.455 1412 2160 1 chr6D.!!$F1 748
16 TraesCS6A01G172700 chr1D 493699037 493699962 925 False 1290 1290 91.819 480 1406 1 chr1D.!!$F1 926
17 TraesCS6A01G172700 chr1D 458884239 458884972 733 True 977 977 90.533 1420 2169 1 chr1D.!!$R1 749
18 TraesCS6A01G172700 chr1B 371505828 371506576 748 False 1123 1123 93.725 1414 2162 1 chr1B.!!$F1 748
19 TraesCS6A01G172700 chr7A 78105702 78106430 728 False 1022 1022 91.812 1419 2162 1 chr7A.!!$F1 743
20 TraesCS6A01G172700 chr7D 105199820 105200580 760 True 915 915 88.731 1419 2169 1 chr7D.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.03601 AGAAACCTCGATGTGGCTGG 60.036 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1840 0.323542 ACCACCGGTGTTTTGAACCA 60.324 50.0 31.8 0.0 37.57 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.029642 AGAATCTGTATTTTTAACTGTCACCG 57.970 34.615 0.00 0.00 0.00 4.94
34 35 7.876068 AGAATCTGTATTTTTAACTGTCACCGA 59.124 33.333 0.00 0.00 0.00 4.69
35 36 7.972832 ATCTGTATTTTTAACTGTCACCGAA 57.027 32.000 0.00 0.00 0.00 4.30
36 37 7.789273 TCTGTATTTTTAACTGTCACCGAAA 57.211 32.000 0.00 0.00 0.00 3.46
37 38 8.385898 TCTGTATTTTTAACTGTCACCGAAAT 57.614 30.769 0.00 0.00 0.00 2.17
38 39 9.491675 TCTGTATTTTTAACTGTCACCGAAATA 57.508 29.630 0.00 0.00 0.00 1.40
39 40 9.755064 CTGTATTTTTAACTGTCACCGAAATAG 57.245 33.333 0.00 0.00 0.00 1.73
40 41 9.491675 TGTATTTTTAACTGTCACCGAAATAGA 57.508 29.630 0.00 0.00 0.00 1.98
43 44 6.476243 TTTAACTGTCACCGAAATAGAAGC 57.524 37.500 0.00 0.00 0.00 3.86
44 45 3.678056 ACTGTCACCGAAATAGAAGCA 57.322 42.857 0.00 0.00 0.00 3.91
45 46 4.002906 ACTGTCACCGAAATAGAAGCAA 57.997 40.909 0.00 0.00 0.00 3.91
46 47 4.385825 ACTGTCACCGAAATAGAAGCAAA 58.614 39.130 0.00 0.00 0.00 3.68
47 48 4.452455 ACTGTCACCGAAATAGAAGCAAAG 59.548 41.667 0.00 0.00 0.00 2.77
48 49 3.751175 TGTCACCGAAATAGAAGCAAAGG 59.249 43.478 0.00 0.00 0.00 3.11
49 50 2.747446 TCACCGAAATAGAAGCAAAGGC 59.253 45.455 0.00 0.00 41.61 4.35
50 51 2.487762 CACCGAAATAGAAGCAAAGGCA 59.512 45.455 0.00 0.00 44.61 4.75
51 52 2.488153 ACCGAAATAGAAGCAAAGGCAC 59.512 45.455 0.00 0.00 44.61 5.01
52 53 2.476185 CCGAAATAGAAGCAAAGGCACG 60.476 50.000 0.00 0.00 44.61 5.34
53 54 2.159627 CGAAATAGAAGCAAAGGCACGT 59.840 45.455 0.00 0.00 44.61 4.49
54 55 3.369756 CGAAATAGAAGCAAAGGCACGTA 59.630 43.478 0.00 0.00 44.61 3.57
55 56 4.648970 GAAATAGAAGCAAAGGCACGTAC 58.351 43.478 0.00 0.00 44.61 3.67
56 57 2.088950 TAGAAGCAAAGGCACGTACC 57.911 50.000 0.00 0.00 44.61 3.34
57 58 0.396811 AGAAGCAAAGGCACGTACCT 59.603 50.000 0.00 0.00 44.61 3.08
58 59 0.517316 GAAGCAAAGGCACGTACCTG 59.483 55.000 8.45 0.00 44.61 4.00
59 60 0.179029 AAGCAAAGGCACGTACCTGT 60.179 50.000 8.45 0.00 44.61 4.00
60 61 0.602905 AGCAAAGGCACGTACCTGTC 60.603 55.000 8.45 0.61 44.61 3.51
61 62 1.574702 GCAAAGGCACGTACCTGTCC 61.575 60.000 8.45 0.00 39.93 4.02
62 63 0.953960 CAAAGGCACGTACCTGTCCC 60.954 60.000 8.45 0.00 39.93 4.46
63 64 1.412453 AAAGGCACGTACCTGTCCCA 61.412 55.000 8.45 0.00 39.93 4.37
64 65 1.412453 AAGGCACGTACCTGTCCCAA 61.412 55.000 8.45 0.00 39.93 4.12
65 66 1.670083 GGCACGTACCTGTCCCAAC 60.670 63.158 0.00 0.00 0.00 3.77
66 67 1.370064 GCACGTACCTGTCCCAACT 59.630 57.895 0.00 0.00 0.00 3.16
67 68 0.250166 GCACGTACCTGTCCCAACTT 60.250 55.000 0.00 0.00 0.00 2.66
68 69 1.812708 GCACGTACCTGTCCCAACTTT 60.813 52.381 0.00 0.00 0.00 2.66
69 70 1.871039 CACGTACCTGTCCCAACTTTG 59.129 52.381 0.00 0.00 0.00 2.77
80 81 3.717842 CAACTTTGGAGGGTCCGAA 57.282 52.632 0.00 0.00 40.17 4.30
81 82 2.200373 CAACTTTGGAGGGTCCGAAT 57.800 50.000 0.00 0.00 39.13 3.34
82 83 2.084546 CAACTTTGGAGGGTCCGAATC 58.915 52.381 0.00 0.00 39.13 2.52
83 84 0.249398 ACTTTGGAGGGTCCGAATCG 59.751 55.000 0.00 0.00 39.13 3.34
84 85 1.078708 TTTGGAGGGTCCGAATCGC 60.079 57.895 0.00 0.00 40.17 4.58
85 86 2.845752 TTTGGAGGGTCCGAATCGCG 62.846 60.000 0.00 0.00 40.17 5.87
136 137 4.241555 GCGCGGGTCCATGGAGAT 62.242 66.667 16.81 0.00 0.00 2.75
137 138 2.280389 CGCGGGTCCATGGAGATG 60.280 66.667 16.81 8.72 0.00 2.90
148 149 3.205784 CATGGAGATGGAGGAGAAACC 57.794 52.381 0.00 0.00 39.35 3.27
158 159 2.768834 GGAGAAACCTCGATGTGGC 58.231 57.895 0.00 0.00 35.41 5.01
159 160 0.250513 GGAGAAACCTCGATGTGGCT 59.749 55.000 0.00 0.00 35.41 4.75
160 161 1.363744 GAGAAACCTCGATGTGGCTG 58.636 55.000 0.00 0.00 0.00 4.85
161 162 0.036010 AGAAACCTCGATGTGGCTGG 60.036 55.000 0.00 0.00 0.00 4.85
162 163 1.648467 GAAACCTCGATGTGGCTGGC 61.648 60.000 0.00 0.00 0.00 4.85
163 164 3.958147 AACCTCGATGTGGCTGGCG 62.958 63.158 0.00 0.00 0.00 5.69
209 210 5.594725 GCATCTCGAATAGAGGGTCCATATA 59.405 44.000 0.00 0.00 46.82 0.86
316 324 5.527582 GCCTCCTCGTGATGTAAAATACAAT 59.472 40.000 0.00 0.00 42.76 2.71
324 332 6.019398 CGTGATGTAAAATACAATACCTCGCA 60.019 38.462 0.00 0.00 42.76 5.10
336 344 7.452880 ACAATACCTCGCAATGCAAATATAT 57.547 32.000 5.91 0.00 0.00 0.86
341 349 7.870509 ACCTCGCAATGCAAATATATATCAT 57.129 32.000 5.91 0.00 0.00 2.45
411 419 1.885887 CACTTCATTTCCTTTCCCGCA 59.114 47.619 0.00 0.00 0.00 5.69
412 420 2.493278 CACTTCATTTCCTTTCCCGCAT 59.507 45.455 0.00 0.00 0.00 4.73
698 749 3.943691 AACCGTAGCCGCAACCCA 61.944 61.111 0.00 0.00 0.00 4.51
713 767 0.542232 ACCCAGCCGACAGTTCTACT 60.542 55.000 0.00 0.00 0.00 2.57
817 871 2.108075 ACCACACATCCATTCCTCAACA 59.892 45.455 0.00 0.00 0.00 3.33
819 873 3.765511 CCACACATCCATTCCTCAACATT 59.234 43.478 0.00 0.00 0.00 2.71
1108 1165 1.303309 CGATGAGGGCTTCATTGTCC 58.697 55.000 13.74 0.00 46.51 4.02
1135 1192 5.885912 GGAAGAAGTGGAAATTATAGCACCA 59.114 40.000 0.00 0.00 0.00 4.17
1248 1305 4.507756 CGCATCAAGGAGTATTTCGATGAA 59.492 41.667 0.00 0.00 33.66 2.57
1273 1330 3.040147 ACACAAGTGGTATCTTCCGTG 57.960 47.619 5.08 0.00 31.82 4.94
1523 1601 2.676471 GGTGGCTTCGGTGGCAAT 60.676 61.111 6.42 0.00 44.02 3.56
1741 1840 3.259374 GGTGGAGATGATGATCGTACCAT 59.741 47.826 13.44 0.00 35.39 3.55
1948 2051 1.211449 CAATGCAAAACCGCGGCTA 59.789 52.632 28.58 5.47 33.35 3.93
1989 2095 2.511879 GCGCGACCGTTTTCATATTTT 58.488 42.857 12.10 0.00 36.67 1.82
2053 2182 5.825532 TGGACCATCAATTTGAACCATCTA 58.174 37.500 2.68 0.00 0.00 1.98
2098 2227 1.651138 CGCAAAACGCACTTTTTGACA 59.349 42.857 14.38 0.00 45.54 3.58
2127 2256 7.602265 CCAAATTTTACATCTTCGGTTTTGGAT 59.398 33.333 4.95 0.00 41.83 3.41
2169 2298 6.209986 ATCTATTGAAGATGCTCTGAGGAGAG 59.790 42.308 6.83 0.00 43.62 3.20
2170 2299 2.386779 TGAAGATGCTCTGAGGAGAGG 58.613 52.381 6.83 0.00 45.40 3.69
2174 2303 1.309347 TGCTCTGAGGAGAGGAGGG 59.691 63.158 6.83 0.00 45.40 4.30
2175 2304 1.309688 GCTCTGAGGAGAGGAGGGT 59.690 63.158 6.83 0.00 45.40 4.34
2176 2305 1.042559 GCTCTGAGGAGAGGAGGGTG 61.043 65.000 6.83 0.00 45.40 4.61
2177 2306 0.334676 CTCTGAGGAGAGGAGGGTGT 59.665 60.000 0.00 0.00 42.03 4.16
2178 2307 0.040351 TCTGAGGAGAGGAGGGTGTG 59.960 60.000 0.00 0.00 0.00 3.82
2179 2308 0.975040 CTGAGGAGAGGAGGGTGTGG 60.975 65.000 0.00 0.00 0.00 4.17
2180 2309 1.388531 GAGGAGAGGAGGGTGTGGA 59.611 63.158 0.00 0.00 0.00 4.02
2181 2310 0.686112 GAGGAGAGGAGGGTGTGGAG 60.686 65.000 0.00 0.00 0.00 3.86
2182 2311 1.687493 GGAGAGGAGGGTGTGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
2183 2312 1.079438 GAGAGGAGGGTGTGGAGGT 59.921 63.158 0.00 0.00 0.00 3.85
2184 2313 1.229336 AGAGGAGGGTGTGGAGGTG 60.229 63.158 0.00 0.00 0.00 4.00
2185 2314 2.203998 AGGAGGGTGTGGAGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
2186 2315 2.203938 GGAGGGTGTGGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
2187 2316 2.593956 GGAGGGTGTGGAGGTGGAC 61.594 68.421 0.00 0.00 0.00 4.02
2188 2317 2.923035 AGGGTGTGGAGGTGGACG 60.923 66.667 0.00 0.00 0.00 4.79
2189 2318 2.920912 GGGTGTGGAGGTGGACGA 60.921 66.667 0.00 0.00 0.00 4.20
2190 2319 2.342648 GGTGTGGAGGTGGACGAC 59.657 66.667 0.00 0.00 0.00 4.34
2191 2320 2.207924 GGTGTGGAGGTGGACGACT 61.208 63.158 0.00 0.00 0.00 4.18
2192 2321 1.006102 GTGTGGAGGTGGACGACTG 60.006 63.158 0.00 0.00 0.00 3.51
2193 2322 2.048127 GTGGAGGTGGACGACTGC 60.048 66.667 0.00 0.00 0.00 4.40
2194 2323 2.203640 TGGAGGTGGACGACTGCT 60.204 61.111 0.00 0.00 0.00 4.24
2195 2324 1.076014 TGGAGGTGGACGACTGCTA 59.924 57.895 0.00 0.00 0.00 3.49
2196 2325 0.965866 TGGAGGTGGACGACTGCTAG 60.966 60.000 0.00 0.00 0.00 3.42
2197 2326 1.668101 GGAGGTGGACGACTGCTAGG 61.668 65.000 0.00 0.00 0.00 3.02
2198 2327 0.680280 GAGGTGGACGACTGCTAGGA 60.680 60.000 0.00 0.00 0.00 2.94
2199 2328 0.681564 AGGTGGACGACTGCTAGGAG 60.682 60.000 10.09 10.09 0.00 3.69
2200 2329 0.680280 GGTGGACGACTGCTAGGAGA 60.680 60.000 19.21 0.00 0.00 3.71
2201 2330 0.452585 GTGGACGACTGCTAGGAGAC 59.547 60.000 19.21 11.09 0.00 3.36
2202 2331 1.025113 TGGACGACTGCTAGGAGACG 61.025 60.000 28.14 28.14 37.20 4.18
2203 2332 1.716826 GGACGACTGCTAGGAGACGG 61.717 65.000 31.33 17.99 35.78 4.79
2204 2333 0.743701 GACGACTGCTAGGAGACGGA 60.744 60.000 31.33 0.00 35.78 4.69
2205 2334 0.745128 ACGACTGCTAGGAGACGGAG 60.745 60.000 31.33 14.75 35.78 4.63
2206 2335 1.440938 CGACTGCTAGGAGACGGAGG 61.441 65.000 23.92 0.84 0.00 4.30
2207 2336 1.076632 ACTGCTAGGAGACGGAGGG 60.077 63.158 19.21 0.00 0.00 4.30
2208 2337 1.227664 CTGCTAGGAGACGGAGGGA 59.772 63.158 5.08 0.00 0.00 4.20
2209 2338 0.821711 CTGCTAGGAGACGGAGGGAG 60.822 65.000 5.08 0.00 0.00 4.30
2210 2339 1.279749 TGCTAGGAGACGGAGGGAGA 61.280 60.000 0.00 0.00 0.00 3.71
2211 2340 0.820482 GCTAGGAGACGGAGGGAGAC 60.820 65.000 0.00 0.00 0.00 3.36
2224 2353 3.442996 GGAGACCACAGATCAACGG 57.557 57.895 0.00 0.00 0.00 4.44
2225 2354 0.741221 GGAGACCACAGATCAACGGC 60.741 60.000 0.00 0.00 0.00 5.68
2226 2355 0.741221 GAGACCACAGATCAACGGCC 60.741 60.000 0.00 0.00 0.00 6.13
2227 2356 1.003839 GACCACAGATCAACGGCCA 60.004 57.895 2.24 0.00 0.00 5.36
2228 2357 1.003355 ACCACAGATCAACGGCCAG 60.003 57.895 2.24 0.00 0.00 4.85
2229 2358 1.746615 CCACAGATCAACGGCCAGG 60.747 63.158 2.24 0.00 0.00 4.45
2230 2359 1.296392 CACAGATCAACGGCCAGGA 59.704 57.895 2.24 0.00 0.00 3.86
2231 2360 0.742281 CACAGATCAACGGCCAGGAG 60.742 60.000 2.24 0.00 0.00 3.69
2232 2361 1.153289 CAGATCAACGGCCAGGAGG 60.153 63.158 2.24 0.00 38.23 4.30
2233 2362 2.190578 GATCAACGGCCAGGAGGG 59.809 66.667 2.24 0.00 40.85 4.30
2234 2363 2.610859 ATCAACGGCCAGGAGGGT 60.611 61.111 2.24 0.00 39.65 4.34
2235 2364 2.876368 GATCAACGGCCAGGAGGGTG 62.876 65.000 2.24 0.00 39.65 4.61
2236 2365 3.953775 CAACGGCCAGGAGGGTGT 61.954 66.667 2.24 0.00 39.65 4.16
2237 2366 3.637273 AACGGCCAGGAGGGTGTC 61.637 66.667 2.24 0.00 39.65 3.67
2249 2378 3.830192 GGTGTCCGACCCGCGTAT 61.830 66.667 4.92 0.00 39.10 3.06
2250 2379 2.182537 GTGTCCGACCCGCGTATT 59.817 61.111 4.92 0.00 38.67 1.89
2251 2380 1.446618 GTGTCCGACCCGCGTATTT 60.447 57.895 4.92 0.00 38.67 1.40
2252 2381 1.446445 TGTCCGACCCGCGTATTTG 60.446 57.895 4.92 0.00 38.67 2.32
2253 2382 2.169146 GTCCGACCCGCGTATTTGG 61.169 63.158 4.92 0.00 38.67 3.28
2258 2387 3.598327 CCCGCGTATTTGGGCTTT 58.402 55.556 4.92 0.00 38.90 3.51
2259 2388 1.138671 CCCGCGTATTTGGGCTTTG 59.861 57.895 4.92 0.00 38.90 2.77
2260 2389 1.138671 CCGCGTATTTGGGCTTTGG 59.861 57.895 4.92 0.00 0.00 3.28
2261 2390 1.591504 CCGCGTATTTGGGCTTTGGT 61.592 55.000 4.92 0.00 0.00 3.67
2262 2391 0.242555 CGCGTATTTGGGCTTTGGTT 59.757 50.000 0.00 0.00 0.00 3.67
2263 2392 1.336424 CGCGTATTTGGGCTTTGGTTT 60.336 47.619 0.00 0.00 0.00 3.27
2264 2393 2.761559 GCGTATTTGGGCTTTGGTTTT 58.238 42.857 0.00 0.00 0.00 2.43
2265 2394 2.734606 GCGTATTTGGGCTTTGGTTTTC 59.265 45.455 0.00 0.00 0.00 2.29
2266 2395 3.554129 GCGTATTTGGGCTTTGGTTTTCT 60.554 43.478 0.00 0.00 0.00 2.52
2267 2396 4.234574 CGTATTTGGGCTTTGGTTTTCTC 58.765 43.478 0.00 0.00 0.00 2.87
2268 2397 4.022329 CGTATTTGGGCTTTGGTTTTCTCT 60.022 41.667 0.00 0.00 0.00 3.10
2269 2398 4.607293 ATTTGGGCTTTGGTTTTCTCTC 57.393 40.909 0.00 0.00 0.00 3.20
2270 2399 1.995376 TGGGCTTTGGTTTTCTCTCC 58.005 50.000 0.00 0.00 0.00 3.71
2271 2400 1.216678 TGGGCTTTGGTTTTCTCTCCA 59.783 47.619 0.00 0.00 0.00 3.86
2272 2401 1.613925 GGGCTTTGGTTTTCTCTCCAC 59.386 52.381 0.00 0.00 33.12 4.02
2273 2402 2.306847 GGCTTTGGTTTTCTCTCCACA 58.693 47.619 0.00 0.00 33.12 4.17
2274 2403 2.693074 GGCTTTGGTTTTCTCTCCACAA 59.307 45.455 0.00 0.00 33.12 3.33
2275 2404 3.321968 GGCTTTGGTTTTCTCTCCACAAT 59.678 43.478 0.00 0.00 33.12 2.71
2276 2405 4.522789 GGCTTTGGTTTTCTCTCCACAATA 59.477 41.667 0.00 0.00 33.12 1.90
2277 2406 5.335976 GGCTTTGGTTTTCTCTCCACAATAG 60.336 44.000 0.00 0.00 33.12 1.73
2278 2407 5.473504 GCTTTGGTTTTCTCTCCACAATAGA 59.526 40.000 0.00 0.00 33.12 1.98
2279 2408 6.151817 GCTTTGGTTTTCTCTCCACAATAGAT 59.848 38.462 0.00 0.00 33.12 1.98
2280 2409 7.452880 TTTGGTTTTCTCTCCACAATAGATG 57.547 36.000 0.00 0.00 33.12 2.90
2281 2410 6.373005 TGGTTTTCTCTCCACAATAGATGA 57.627 37.500 0.00 0.00 0.00 2.92
2282 2411 6.778821 TGGTTTTCTCTCCACAATAGATGAA 58.221 36.000 0.00 0.00 0.00 2.57
2283 2412 6.655003 TGGTTTTCTCTCCACAATAGATGAAC 59.345 38.462 0.00 0.00 0.00 3.18
2284 2413 6.183360 GGTTTTCTCTCCACAATAGATGAACG 60.183 42.308 0.00 0.00 0.00 3.95
2285 2414 4.655762 TCTCTCCACAATAGATGAACGG 57.344 45.455 0.00 0.00 0.00 4.44
2286 2415 3.384789 TCTCTCCACAATAGATGAACGGG 59.615 47.826 0.00 0.00 0.00 5.28
2287 2416 3.371034 TCTCCACAATAGATGAACGGGA 58.629 45.455 0.00 0.00 0.00 5.14
2288 2417 3.772572 TCTCCACAATAGATGAACGGGAA 59.227 43.478 0.00 0.00 0.00 3.97
2289 2418 4.224147 TCTCCACAATAGATGAACGGGAAA 59.776 41.667 0.00 0.00 0.00 3.13
2290 2419 4.513442 TCCACAATAGATGAACGGGAAAG 58.487 43.478 0.00 0.00 0.00 2.62
2291 2420 3.627577 CCACAATAGATGAACGGGAAAGG 59.372 47.826 0.00 0.00 0.00 3.11
2292 2421 3.627577 CACAATAGATGAACGGGAAAGGG 59.372 47.826 0.00 0.00 0.00 3.95
2293 2422 3.214328 CAATAGATGAACGGGAAAGGGG 58.786 50.000 0.00 0.00 0.00 4.79
2294 2423 2.257391 TAGATGAACGGGAAAGGGGA 57.743 50.000 0.00 0.00 0.00 4.81
2295 2424 1.368374 AGATGAACGGGAAAGGGGAA 58.632 50.000 0.00 0.00 0.00 3.97
2296 2425 1.282157 AGATGAACGGGAAAGGGGAAG 59.718 52.381 0.00 0.00 0.00 3.46
2297 2426 1.004394 GATGAACGGGAAAGGGGAAGT 59.996 52.381 0.00 0.00 0.00 3.01
2298 2427 0.109723 TGAACGGGAAAGGGGAAGTG 59.890 55.000 0.00 0.00 0.00 3.16
2299 2428 0.109913 GAACGGGAAAGGGGAAGTGT 59.890 55.000 0.00 0.00 0.00 3.55
2300 2429 1.348696 GAACGGGAAAGGGGAAGTGTA 59.651 52.381 0.00 0.00 0.00 2.90
2301 2430 1.437397 ACGGGAAAGGGGAAGTGTAA 58.563 50.000 0.00 0.00 0.00 2.41
2302 2431 1.990327 ACGGGAAAGGGGAAGTGTAAT 59.010 47.619 0.00 0.00 0.00 1.89
2303 2432 3.183801 ACGGGAAAGGGGAAGTGTAATA 58.816 45.455 0.00 0.00 0.00 0.98
2304 2433 3.588396 ACGGGAAAGGGGAAGTGTAATAA 59.412 43.478 0.00 0.00 0.00 1.40
2305 2434 4.196971 CGGGAAAGGGGAAGTGTAATAAG 58.803 47.826 0.00 0.00 0.00 1.73
2306 2435 4.324022 CGGGAAAGGGGAAGTGTAATAAGT 60.324 45.833 0.00 0.00 0.00 2.24
2307 2436 5.104817 CGGGAAAGGGGAAGTGTAATAAGTA 60.105 44.000 0.00 0.00 0.00 2.24
2308 2437 6.576840 CGGGAAAGGGGAAGTGTAATAAGTAA 60.577 42.308 0.00 0.00 0.00 2.24
2309 2438 6.827251 GGGAAAGGGGAAGTGTAATAAGTAAG 59.173 42.308 0.00 0.00 0.00 2.34
2310 2439 6.827251 GGAAAGGGGAAGTGTAATAAGTAAGG 59.173 42.308 0.00 0.00 0.00 2.69
2311 2440 5.970501 AGGGGAAGTGTAATAAGTAAGGG 57.029 43.478 0.00 0.00 0.00 3.95
2312 2441 5.606761 AGGGGAAGTGTAATAAGTAAGGGA 58.393 41.667 0.00 0.00 0.00 4.20
2313 2442 6.034003 AGGGGAAGTGTAATAAGTAAGGGAA 58.966 40.000 0.00 0.00 0.00 3.97
2314 2443 6.069789 AGGGGAAGTGTAATAAGTAAGGGAAC 60.070 42.308 0.00 0.00 0.00 3.62
2315 2444 6.296605 GGGGAAGTGTAATAAGTAAGGGAACA 60.297 42.308 0.00 0.00 0.00 3.18
2316 2445 7.344134 GGGAAGTGTAATAAGTAAGGGAACAT 58.656 38.462 0.00 0.00 0.00 2.71
2317 2446 7.498239 GGGAAGTGTAATAAGTAAGGGAACATC 59.502 40.741 0.00 0.00 0.00 3.06
2318 2447 8.265764 GGAAGTGTAATAAGTAAGGGAACATCT 58.734 37.037 0.00 0.00 0.00 2.90
2319 2448 9.315525 GAAGTGTAATAAGTAAGGGAACATCTC 57.684 37.037 0.00 0.00 0.00 2.75
2320 2449 7.793036 AGTGTAATAAGTAAGGGAACATCTCC 58.207 38.462 0.00 0.00 44.54 3.71
2321 2450 6.700520 GTGTAATAAGTAAGGGAACATCTCCG 59.299 42.308 0.00 0.00 46.51 4.63
2322 2451 4.957684 ATAAGTAAGGGAACATCTCCGG 57.042 45.455 0.00 0.00 46.51 5.14
2323 2452 2.249309 AGTAAGGGAACATCTCCGGT 57.751 50.000 0.00 0.00 46.51 5.28
2324 2453 2.547990 AGTAAGGGAACATCTCCGGTT 58.452 47.619 0.00 0.00 46.51 4.44
2325 2454 2.236395 AGTAAGGGAACATCTCCGGTTG 59.764 50.000 0.00 0.30 46.51 3.77
2326 2455 0.328258 AAGGGAACATCTCCGGTTGG 59.672 55.000 0.00 0.00 46.51 3.77
2327 2456 0.546747 AGGGAACATCTCCGGTTGGA 60.547 55.000 0.00 0.00 46.51 3.53
2328 2457 0.326927 GGGAACATCTCCGGTTGGAA 59.673 55.000 0.00 0.00 45.87 3.53
2329 2458 1.064685 GGGAACATCTCCGGTTGGAAT 60.065 52.381 0.00 0.00 45.87 3.01
2330 2459 2.620627 GGGAACATCTCCGGTTGGAATT 60.621 50.000 0.00 0.00 45.87 2.17
2331 2460 2.423538 GGAACATCTCCGGTTGGAATTG 59.576 50.000 0.00 0.00 45.87 2.32
2332 2461 2.128771 ACATCTCCGGTTGGAATTGG 57.871 50.000 0.00 0.00 45.87 3.16
2333 2462 1.340991 ACATCTCCGGTTGGAATTGGG 60.341 52.381 0.00 0.00 45.87 4.12
2334 2463 0.395724 ATCTCCGGTTGGAATTGGGC 60.396 55.000 0.00 0.00 45.87 5.36
2335 2464 2.036572 TCCGGTTGGAATTGGGCC 59.963 61.111 0.00 0.00 42.85 5.80
2336 2465 2.037208 CCGGTTGGAATTGGGCCT 59.963 61.111 4.53 0.00 37.49 5.19
2337 2466 1.609210 CCGGTTGGAATTGGGCCTT 60.609 57.895 4.53 0.00 37.49 4.35
2338 2467 1.604147 CCGGTTGGAATTGGGCCTTC 61.604 60.000 4.53 0.15 37.49 3.46
2339 2468 1.604147 CGGTTGGAATTGGGCCTTCC 61.604 60.000 15.83 15.83 42.15 3.46
2340 2469 1.604147 GGTTGGAATTGGGCCTTCCG 61.604 60.000 17.11 0.00 44.29 4.30
2341 2470 0.898326 GTTGGAATTGGGCCTTCCGT 60.898 55.000 17.11 0.00 44.29 4.69
2342 2471 0.897863 TTGGAATTGGGCCTTCCGTG 60.898 55.000 17.11 0.00 44.29 4.94
2343 2472 2.052104 GGAATTGGGCCTTCCGTGG 61.052 63.158 8.65 0.00 38.76 4.94
2344 2473 1.001393 GAATTGGGCCTTCCGTGGA 60.001 57.895 4.53 0.00 38.76 4.02
2345 2474 0.610785 GAATTGGGCCTTCCGTGGAA 60.611 55.000 4.53 0.68 38.76 3.53
2346 2475 0.898326 AATTGGGCCTTCCGTGGAAC 60.898 55.000 4.53 0.00 38.76 3.62
2347 2476 2.075355 ATTGGGCCTTCCGTGGAACA 62.075 55.000 4.53 0.00 38.76 3.18
2348 2477 2.114411 GGGCCTTCCGTGGAACAA 59.886 61.111 0.84 0.00 44.16 2.83
2349 2478 1.304134 GGGCCTTCCGTGGAACAAT 60.304 57.895 0.84 0.00 44.16 2.71
2350 2479 0.898326 GGGCCTTCCGTGGAACAATT 60.898 55.000 0.84 0.00 44.16 2.32
2351 2480 1.614850 GGGCCTTCCGTGGAACAATTA 60.615 52.381 0.84 0.00 44.16 1.40
2352 2481 1.743394 GGCCTTCCGTGGAACAATTAG 59.257 52.381 0.00 0.00 44.16 1.73
2353 2482 2.617021 GGCCTTCCGTGGAACAATTAGA 60.617 50.000 0.00 0.00 44.16 2.10
2354 2483 2.678336 GCCTTCCGTGGAACAATTAGAG 59.322 50.000 0.00 0.00 44.16 2.43
2355 2484 2.678336 CCTTCCGTGGAACAATTAGAGC 59.322 50.000 0.00 0.00 44.16 4.09
2356 2485 3.334691 CTTCCGTGGAACAATTAGAGCA 58.665 45.455 0.00 0.00 44.16 4.26
2357 2486 3.627395 TCCGTGGAACAATTAGAGCAT 57.373 42.857 0.00 0.00 44.16 3.79
2358 2487 3.531538 TCCGTGGAACAATTAGAGCATC 58.468 45.455 0.00 0.00 44.16 3.91
2360 2489 3.310774 CCGTGGAACAATTAGAGCATCTG 59.689 47.826 0.00 0.00 45.64 2.90
2361 2490 4.183865 CGTGGAACAATTAGAGCATCTGA 58.816 43.478 0.00 0.00 45.64 3.27
2362 2491 4.269603 CGTGGAACAATTAGAGCATCTGAG 59.730 45.833 0.00 0.00 45.64 3.35
2363 2492 4.034975 GTGGAACAATTAGAGCATCTGAGC 59.965 45.833 0.00 0.00 45.64 4.26
2364 2493 4.323715 TGGAACAATTAGAGCATCTGAGCA 60.324 41.667 0.00 0.00 41.40 4.26
2365 2494 5.804120 TGGAACAATTAGAGCATCTGAGCAA 60.804 40.000 0.00 0.00 41.40 3.91
2366 2495 7.788585 TGGAACAATTAGAGCATCTGAGCAAC 61.789 42.308 0.00 0.00 41.40 4.17
2367 2496 9.849279 TGGAACAATTAGAGCATCTGAGCAACT 62.849 40.741 0.00 0.00 41.40 3.16
2372 2501 2.472816 GAGCATCTGAGCAACTCTAGC 58.527 52.381 0.00 0.00 36.85 3.42
2373 2502 1.829849 AGCATCTGAGCAACTCTAGCA 59.170 47.619 0.00 0.00 36.85 3.49
2374 2503 2.159071 AGCATCTGAGCAACTCTAGCAG 60.159 50.000 0.00 0.00 36.85 4.24
2375 2504 2.159128 GCATCTGAGCAACTCTAGCAGA 60.159 50.000 0.00 0.00 39.61 4.26
2376 2505 3.493002 GCATCTGAGCAACTCTAGCAGAT 60.493 47.826 0.00 0.00 44.59 2.90
2377 2506 4.695396 CATCTGAGCAACTCTAGCAGATT 58.305 43.478 0.00 0.00 42.58 2.40
2378 2507 4.815533 TCTGAGCAACTCTAGCAGATTT 57.184 40.909 0.00 0.00 31.24 2.17
2379 2508 4.753233 TCTGAGCAACTCTAGCAGATTTC 58.247 43.478 0.00 0.00 31.24 2.17
2380 2509 4.221482 TCTGAGCAACTCTAGCAGATTTCA 59.779 41.667 0.00 0.00 31.24 2.69
2381 2510 5.095145 TGAGCAACTCTAGCAGATTTCAT 57.905 39.130 0.00 0.00 0.00 2.57
2382 2511 6.097412 TCTGAGCAACTCTAGCAGATTTCATA 59.903 38.462 0.00 0.00 31.24 2.15
2383 2512 6.643388 TGAGCAACTCTAGCAGATTTCATAA 58.357 36.000 0.00 0.00 0.00 1.90
2384 2513 7.105588 TGAGCAACTCTAGCAGATTTCATAAA 58.894 34.615 0.00 0.00 0.00 1.40
2385 2514 7.065085 TGAGCAACTCTAGCAGATTTCATAAAC 59.935 37.037 0.00 0.00 0.00 2.01
2386 2515 6.317391 AGCAACTCTAGCAGATTTCATAAACC 59.683 38.462 0.00 0.00 0.00 3.27
2387 2516 6.317391 GCAACTCTAGCAGATTTCATAAACCT 59.683 38.462 0.00 0.00 0.00 3.50
2388 2517 7.148171 GCAACTCTAGCAGATTTCATAAACCTT 60.148 37.037 0.00 0.00 0.00 3.50
2389 2518 8.394121 CAACTCTAGCAGATTTCATAAACCTTC 58.606 37.037 0.00 0.00 0.00 3.46
2390 2519 6.758886 ACTCTAGCAGATTTCATAAACCTTCG 59.241 38.462 0.00 0.00 0.00 3.79
2391 2520 6.640518 TCTAGCAGATTTCATAAACCTTCGT 58.359 36.000 0.00 0.00 0.00 3.85
2392 2521 5.803020 AGCAGATTTCATAAACCTTCGTC 57.197 39.130 0.00 0.00 0.00 4.20
2393 2522 4.636206 AGCAGATTTCATAAACCTTCGTCC 59.364 41.667 0.00 0.00 0.00 4.79
2394 2523 4.636206 GCAGATTTCATAAACCTTCGTCCT 59.364 41.667 0.00 0.00 0.00 3.85
2395 2524 5.123979 GCAGATTTCATAAACCTTCGTCCTT 59.876 40.000 0.00 0.00 0.00 3.36
2396 2525 6.349363 GCAGATTTCATAAACCTTCGTCCTTT 60.349 38.462 0.00 0.00 0.00 3.11
2397 2526 7.148306 GCAGATTTCATAAACCTTCGTCCTTTA 60.148 37.037 0.00 0.00 0.00 1.85
2398 2527 8.726988 CAGATTTCATAAACCTTCGTCCTTTAA 58.273 33.333 0.00 0.00 0.00 1.52
2399 2528 9.292195 AGATTTCATAAACCTTCGTCCTTTAAA 57.708 29.630 0.00 0.00 0.00 1.52
2400 2529 9.902196 GATTTCATAAACCTTCGTCCTTTAAAA 57.098 29.630 0.00 0.00 0.00 1.52
2402 2531 9.902196 TTTCATAAACCTTCGTCCTTTAAAATC 57.098 29.630 0.00 0.00 0.00 2.17
2403 2532 8.624367 TCATAAACCTTCGTCCTTTAAAATCA 57.376 30.769 0.00 0.00 0.00 2.57
2404 2533 9.238368 TCATAAACCTTCGTCCTTTAAAATCAT 57.762 29.630 0.00 0.00 0.00 2.45
2405 2534 9.855021 CATAAACCTTCGTCCTTTAAAATCATT 57.145 29.630 0.00 0.00 0.00 2.57
2425 2554 7.561237 TCATTTTAAAGATACTGCAAAACGC 57.439 32.000 0.00 0.00 42.89 4.84
2426 2555 7.367285 TCATTTTAAAGATACTGCAAAACGCT 58.633 30.769 0.00 0.00 43.06 5.07
2427 2556 7.865385 TCATTTTAAAGATACTGCAAAACGCTT 59.135 29.630 0.00 0.00 43.06 4.68
2428 2557 7.995463 TTTTAAAGATACTGCAAAACGCTTT 57.005 28.000 0.00 0.00 43.06 3.51
2429 2558 7.995463 TTTAAAGATACTGCAAAACGCTTTT 57.005 28.000 0.00 0.00 43.06 2.27
2430 2559 9.517609 TTTTAAAGATACTGCAAAACGCTTTTA 57.482 25.926 0.00 0.00 43.06 1.52
2431 2560 6.986424 AAAGATACTGCAAAACGCTTTTAC 57.014 33.333 0.00 0.00 43.06 2.01
2432 2561 5.682943 AGATACTGCAAAACGCTTTTACA 57.317 34.783 0.00 0.00 43.06 2.41
2433 2562 6.067263 AGATACTGCAAAACGCTTTTACAA 57.933 33.333 0.00 0.00 43.06 2.41
2434 2563 6.677913 AGATACTGCAAAACGCTTTTACAAT 58.322 32.000 0.00 0.00 43.06 2.71
2435 2564 6.582295 AGATACTGCAAAACGCTTTTACAATG 59.418 34.615 0.00 0.00 43.06 2.82
2436 2565 4.429108 ACTGCAAAACGCTTTTACAATGT 58.571 34.783 0.00 0.00 43.06 2.71
2437 2566 4.867608 ACTGCAAAACGCTTTTACAATGTT 59.132 33.333 0.00 0.00 43.06 2.71
2438 2567 5.005299 ACTGCAAAACGCTTTTACAATGTTC 59.995 36.000 0.00 0.00 43.06 3.18
2439 2568 5.105752 TGCAAAACGCTTTTACAATGTTCT 58.894 33.333 0.00 0.00 43.06 3.01
2440 2569 5.005203 TGCAAAACGCTTTTACAATGTTCTG 59.995 36.000 0.00 0.00 43.06 3.02
2441 2570 5.005299 GCAAAACGCTTTTACAATGTTCTGT 59.995 36.000 0.00 0.00 37.77 3.41
2442 2571 6.454981 GCAAAACGCTTTTACAATGTTCTGTT 60.455 34.615 0.00 0.00 37.77 3.16
2443 2572 7.452231 CAAAACGCTTTTACAATGTTCTGTTT 58.548 30.769 0.00 0.00 0.00 2.83
2444 2573 7.589574 AAACGCTTTTACAATGTTCTGTTTT 57.410 28.000 0.00 0.00 0.00 2.43
2445 2574 7.589574 AACGCTTTTACAATGTTCTGTTTTT 57.410 28.000 0.00 0.00 0.00 1.94
2446 2575 8.690680 AACGCTTTTACAATGTTCTGTTTTTA 57.309 26.923 0.00 0.00 0.00 1.52
2447 2576 8.690680 ACGCTTTTACAATGTTCTGTTTTTAA 57.309 26.923 0.00 0.00 0.00 1.52
2448 2577 8.588789 ACGCTTTTACAATGTTCTGTTTTTAAC 58.411 29.630 0.00 0.00 0.00 2.01
2449 2578 8.053653 CGCTTTTACAATGTTCTGTTTTTAACC 58.946 33.333 0.00 0.00 0.00 2.85
2450 2579 8.874816 GCTTTTACAATGTTCTGTTTTTAACCA 58.125 29.630 0.00 0.00 0.00 3.67
2456 2585 8.878769 ACAATGTTCTGTTTTTAACCAAATGAC 58.121 29.630 0.00 0.00 0.00 3.06
2457 2586 8.877779 CAATGTTCTGTTTTTAACCAAATGACA 58.122 29.630 0.00 0.00 0.00 3.58
2458 2587 9.612066 AATGTTCTGTTTTTAACCAAATGACAT 57.388 25.926 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.146984 CGGTGACAGTTAAAAATACAGATTCTA 57.853 33.333 0.00 0.00 0.00 2.10
8 9 7.876068 TCGGTGACAGTTAAAAATACAGATTCT 59.124 33.333 0.00 0.00 0.00 2.40
9 10 8.025243 TCGGTGACAGTTAAAAATACAGATTC 57.975 34.615 0.00 0.00 0.00 2.52
10 11 7.972832 TCGGTGACAGTTAAAAATACAGATT 57.027 32.000 0.00 0.00 0.00 2.40
11 12 7.972832 TTCGGTGACAGTTAAAAATACAGAT 57.027 32.000 0.00 0.00 0.00 2.90
12 13 7.789273 TTTCGGTGACAGTTAAAAATACAGA 57.211 32.000 0.00 0.00 0.00 3.41
13 14 9.755064 CTATTTCGGTGACAGTTAAAAATACAG 57.245 33.333 0.00 0.00 0.00 2.74
14 15 9.491675 TCTATTTCGGTGACAGTTAAAAATACA 57.508 29.630 0.00 0.00 0.00 2.29
17 18 8.021396 GCTTCTATTTCGGTGACAGTTAAAAAT 58.979 33.333 0.00 0.00 0.00 1.82
18 19 7.012515 TGCTTCTATTTCGGTGACAGTTAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
19 20 6.483974 TGCTTCTATTTCGGTGACAGTTAAAA 59.516 34.615 0.00 0.00 0.00 1.52
20 21 5.992829 TGCTTCTATTTCGGTGACAGTTAAA 59.007 36.000 0.00 0.00 0.00 1.52
21 22 5.543714 TGCTTCTATTTCGGTGACAGTTAA 58.456 37.500 0.00 0.00 0.00 2.01
22 23 5.142061 TGCTTCTATTTCGGTGACAGTTA 57.858 39.130 0.00 0.00 0.00 2.24
23 24 4.002906 TGCTTCTATTTCGGTGACAGTT 57.997 40.909 0.00 0.00 0.00 3.16
24 25 3.678056 TGCTTCTATTTCGGTGACAGT 57.322 42.857 0.00 0.00 0.00 3.55
25 26 4.142816 CCTTTGCTTCTATTTCGGTGACAG 60.143 45.833 0.00 0.00 0.00 3.51
26 27 3.751175 CCTTTGCTTCTATTTCGGTGACA 59.249 43.478 0.00 0.00 0.00 3.58
27 28 3.426292 GCCTTTGCTTCTATTTCGGTGAC 60.426 47.826 0.00 0.00 33.53 3.67
28 29 2.747446 GCCTTTGCTTCTATTTCGGTGA 59.253 45.455 0.00 0.00 33.53 4.02
29 30 2.487762 TGCCTTTGCTTCTATTTCGGTG 59.512 45.455 0.00 0.00 38.71 4.94
30 31 2.488153 GTGCCTTTGCTTCTATTTCGGT 59.512 45.455 0.00 0.00 38.71 4.69
31 32 2.476185 CGTGCCTTTGCTTCTATTTCGG 60.476 50.000 0.00 0.00 38.71 4.30
32 33 2.159627 ACGTGCCTTTGCTTCTATTTCG 59.840 45.455 0.00 0.00 38.71 3.46
33 34 3.831715 ACGTGCCTTTGCTTCTATTTC 57.168 42.857 0.00 0.00 38.71 2.17
34 35 3.439129 GGTACGTGCCTTTGCTTCTATTT 59.561 43.478 16.23 0.00 38.71 1.40
35 36 3.007635 GGTACGTGCCTTTGCTTCTATT 58.992 45.455 16.23 0.00 38.71 1.73
36 37 2.236395 AGGTACGTGCCTTTGCTTCTAT 59.764 45.455 20.57 0.00 34.71 1.98
37 38 1.621814 AGGTACGTGCCTTTGCTTCTA 59.378 47.619 20.57 0.00 34.71 2.10
38 39 0.396811 AGGTACGTGCCTTTGCTTCT 59.603 50.000 20.57 0.00 34.71 2.85
39 40 0.517316 CAGGTACGTGCCTTTGCTTC 59.483 55.000 23.75 0.00 36.58 3.86
40 41 0.179029 ACAGGTACGTGCCTTTGCTT 60.179 50.000 23.75 0.00 36.58 3.91
41 42 0.602905 GACAGGTACGTGCCTTTGCT 60.603 55.000 23.75 5.55 36.58 3.91
42 43 1.574702 GGACAGGTACGTGCCTTTGC 61.575 60.000 23.75 18.50 36.58 3.68
43 44 0.953960 GGGACAGGTACGTGCCTTTG 60.954 60.000 23.75 16.03 43.62 2.77
44 45 1.373812 GGGACAGGTACGTGCCTTT 59.626 57.895 23.75 17.58 43.62 3.11
45 46 1.412453 TTGGGACAGGTACGTGCCTT 61.412 55.000 23.75 14.18 46.85 4.35
46 47 1.839747 TTGGGACAGGTACGTGCCT 60.840 57.895 20.57 20.57 46.85 4.75
47 48 1.670083 GTTGGGACAGGTACGTGCC 60.670 63.158 15.72 15.72 46.91 5.01
48 49 0.250166 AAGTTGGGACAGGTACGTGC 60.250 55.000 15.25 8.20 42.39 5.34
49 50 1.871039 CAAAGTTGGGACAGGTACGTG 59.129 52.381 13.84 13.84 42.39 4.49
50 51 1.202722 CCAAAGTTGGGACAGGTACGT 60.203 52.381 1.83 0.00 44.70 3.57
51 52 1.519408 CCAAAGTTGGGACAGGTACG 58.481 55.000 1.83 0.00 44.70 3.67
62 63 2.084546 GATTCGGACCCTCCAAAGTTG 58.915 52.381 0.00 0.00 35.91 3.16
63 64 1.338769 CGATTCGGACCCTCCAAAGTT 60.339 52.381 0.00 0.00 35.91 2.66
64 65 0.249398 CGATTCGGACCCTCCAAAGT 59.751 55.000 0.00 0.00 35.91 2.66
65 66 1.090052 GCGATTCGGACCCTCCAAAG 61.090 60.000 8.34 0.00 35.91 2.77
66 67 1.078708 GCGATTCGGACCCTCCAAA 60.079 57.895 8.34 0.00 35.91 3.28
67 68 2.582436 GCGATTCGGACCCTCCAA 59.418 61.111 8.34 0.00 35.91 3.53
68 69 3.833645 CGCGATTCGGACCCTCCA 61.834 66.667 0.00 0.00 35.91 3.86
119 120 4.241555 ATCTCCATGGACCCGCGC 62.242 66.667 11.44 0.00 0.00 6.86
120 121 2.280389 CATCTCCATGGACCCGCG 60.280 66.667 11.44 0.00 0.00 6.46
128 129 2.776536 AGGTTTCTCCTCCATCTCCATG 59.223 50.000 0.00 0.00 44.42 3.66
129 130 3.142579 AGGTTTCTCCTCCATCTCCAT 57.857 47.619 0.00 0.00 44.42 3.41
130 131 2.649742 AGGTTTCTCCTCCATCTCCA 57.350 50.000 0.00 0.00 44.42 3.86
140 141 0.250513 AGCCACATCGAGGTTTCTCC 59.749 55.000 0.00 0.00 36.70 3.71
141 142 1.363744 CAGCCACATCGAGGTTTCTC 58.636 55.000 0.00 0.00 36.69 2.87
142 143 0.036010 CCAGCCACATCGAGGTTTCT 60.036 55.000 0.00 0.00 0.00 2.52
143 144 1.648467 GCCAGCCACATCGAGGTTTC 61.648 60.000 0.00 0.00 0.00 2.78
144 145 1.675641 GCCAGCCACATCGAGGTTT 60.676 57.895 0.00 0.00 0.00 3.27
145 146 2.045926 GCCAGCCACATCGAGGTT 60.046 61.111 0.00 0.00 0.00 3.50
146 147 4.457496 CGCCAGCCACATCGAGGT 62.457 66.667 0.00 0.00 0.00 3.85
165 166 4.735132 TCGGTCCGCTCAAAGCCG 62.735 66.667 6.34 0.00 38.18 5.52
166 167 2.815647 CTCGGTCCGCTCAAAGCC 60.816 66.667 6.34 0.00 38.18 4.35
167 168 1.807573 CTCTCGGTCCGCTCAAAGC 60.808 63.158 6.34 0.00 38.02 3.51
168 169 1.807573 GCTCTCGGTCCGCTCAAAG 60.808 63.158 6.34 0.00 0.00 2.77
169 170 1.888436 ATGCTCTCGGTCCGCTCAAA 61.888 55.000 6.34 0.00 0.00 2.69
170 171 2.284798 GATGCTCTCGGTCCGCTCAA 62.285 60.000 6.34 0.00 0.00 3.02
171 172 2.755876 ATGCTCTCGGTCCGCTCA 60.756 61.111 6.34 1.76 0.00 4.26
172 173 2.026879 GATGCTCTCGGTCCGCTC 59.973 66.667 6.34 0.00 0.00 5.03
173 174 2.441164 AGATGCTCTCGGTCCGCT 60.441 61.111 6.34 0.00 0.00 5.52
174 175 2.026879 GAGATGCTCTCGGTCCGC 59.973 66.667 6.34 0.00 33.35 5.54
181 182 3.153919 ACCCTCTATTCGAGATGCTCTC 58.846 50.000 3.80 3.80 42.62 3.20
222 223 6.636562 TTTTGCCTCATACGGTTTAAAAGA 57.363 33.333 0.00 0.00 0.00 2.52
288 296 4.147449 CATCACGAGGAGGCCGCA 62.147 66.667 9.31 0.00 0.00 5.69
316 324 8.962884 ATGATATATATTTGCATTGCGAGGTA 57.037 30.769 3.84 0.36 0.00 3.08
635 683 4.436998 CCCTTCGCCGACTTCGCT 62.437 66.667 0.00 0.00 38.18 4.93
642 690 4.728110 TCCTCGTCCCTTCGCCGA 62.728 66.667 0.00 0.00 0.00 5.54
698 749 0.528470 GCTGAGTAGAACTGTCGGCT 59.472 55.000 10.54 0.00 39.17 5.52
713 767 2.831894 TAGAGACCTTCGCCGGCTGA 62.832 60.000 26.68 20.38 0.00 4.26
796 850 2.108075 TGTTGAGGAATGGATGTGTGGT 59.892 45.455 0.00 0.00 0.00 4.16
867 922 2.034066 CATGTTGGAGGCGGTGGT 59.966 61.111 0.00 0.00 0.00 4.16
964 1021 0.234625 ACACTACAATTGCACGCACG 59.765 50.000 5.05 0.00 0.00 5.34
1108 1165 6.038714 GTGCTATAATTTCCACTTCTTCCCTG 59.961 42.308 0.00 0.00 0.00 4.45
1135 1192 2.170397 TGCATATCAACACATCCTCCGT 59.830 45.455 0.00 0.00 0.00 4.69
1248 1305 2.543777 AGATACCACTTGTGTTGCGT 57.456 45.000 0.00 0.00 0.00 5.24
1406 1463 3.716195 CCCATGGCACCACGGAGA 61.716 66.667 6.09 0.00 29.60 3.71
1407 1464 4.033776 ACCCATGGCACCACGGAG 62.034 66.667 6.09 0.00 29.60 4.63
1454 1511 5.449297 TGGAACCTCCAATCATGTTCATA 57.551 39.130 0.00 0.00 45.00 2.15
1479 1536 1.203523 GTTTCCGCCAAATGCACCATA 59.796 47.619 0.00 0.00 41.33 2.74
1523 1601 0.679640 CGCCAAAGCCACCTTCCATA 60.680 55.000 0.00 0.00 34.57 2.74
1647 1746 2.420022 CACCACCGAAACCATCTTCATC 59.580 50.000 0.00 0.00 0.00 2.92
1678 1777 0.600255 AACAAGCGGTGAACTCTCGG 60.600 55.000 0.00 0.00 0.00 4.63
1741 1840 0.323542 ACCACCGGTGTTTTGAACCA 60.324 50.000 31.80 0.00 37.57 3.67
1807 1906 4.272504 TCGTCTCAATCAAAGTTTTTCGCT 59.727 37.500 0.00 0.00 0.00 4.93
1948 2051 2.123769 TGCTGCCAGCCACTGTTT 60.124 55.556 15.29 0.00 41.51 2.83
2005 2133 7.893124 AATTTGCAACTCCAATAGATGATCT 57.107 32.000 0.00 0.00 29.65 2.75
2008 2136 6.436847 TCCAAATTTGCAACTCCAATAGATGA 59.563 34.615 12.92 0.00 29.65 2.92
2053 2182 4.008074 TCGAGAAAAGCTCAACTCCAAT 57.992 40.909 0.00 0.00 44.15 3.16
2070 2199 2.499732 GCGTTTTGCGGCTTCGAG 60.500 61.111 0.00 0.00 41.69 4.04
2079 2208 2.666022 ACTGTCAAAAAGTGCGTTTTGC 59.334 40.909 15.09 11.76 44.56 3.68
2098 2227 6.894339 AACCGAAGATGTAAAATTTGGACT 57.106 33.333 0.00 0.00 32.63 3.85
2127 2256 6.431543 TCAATAGATGGTTTAAAGTTTGGCGA 59.568 34.615 0.00 0.00 0.00 5.54
2162 2291 0.686112 CTCCACACCCTCCTCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
2169 2298 2.203938 TCCACCTCCACACCCTCC 60.204 66.667 0.00 0.00 0.00 4.30
2170 2299 2.943978 CGTCCACCTCCACACCCTC 61.944 68.421 0.00 0.00 0.00 4.30
2171 2300 2.923035 CGTCCACCTCCACACCCT 60.923 66.667 0.00 0.00 0.00 4.34
2172 2301 2.920912 TCGTCCACCTCCACACCC 60.921 66.667 0.00 0.00 0.00 4.61
2173 2302 2.207924 AGTCGTCCACCTCCACACC 61.208 63.158 0.00 0.00 0.00 4.16
2174 2303 1.006102 CAGTCGTCCACCTCCACAC 60.006 63.158 0.00 0.00 0.00 3.82
2175 2304 2.867855 GCAGTCGTCCACCTCCACA 61.868 63.158 0.00 0.00 0.00 4.17
2176 2305 1.248785 TAGCAGTCGTCCACCTCCAC 61.249 60.000 0.00 0.00 0.00 4.02
2177 2306 0.965866 CTAGCAGTCGTCCACCTCCA 60.966 60.000 0.00 0.00 0.00 3.86
2178 2307 1.668101 CCTAGCAGTCGTCCACCTCC 61.668 65.000 0.00 0.00 0.00 4.30
2179 2308 0.680280 TCCTAGCAGTCGTCCACCTC 60.680 60.000 0.00 0.00 0.00 3.85
2180 2309 0.681564 CTCCTAGCAGTCGTCCACCT 60.682 60.000 0.00 0.00 0.00 4.00
2181 2310 0.680280 TCTCCTAGCAGTCGTCCACC 60.680 60.000 0.00 0.00 0.00 4.61
2182 2311 0.452585 GTCTCCTAGCAGTCGTCCAC 59.547 60.000 0.00 0.00 0.00 4.02
2183 2312 1.025113 CGTCTCCTAGCAGTCGTCCA 61.025 60.000 0.00 0.00 0.00 4.02
2184 2313 1.716826 CCGTCTCCTAGCAGTCGTCC 61.717 65.000 0.00 0.00 0.00 4.79
2185 2314 0.743701 TCCGTCTCCTAGCAGTCGTC 60.744 60.000 0.00 0.00 0.00 4.20
2186 2315 0.745128 CTCCGTCTCCTAGCAGTCGT 60.745 60.000 0.00 0.00 0.00 4.34
2187 2316 1.440938 CCTCCGTCTCCTAGCAGTCG 61.441 65.000 0.00 0.00 0.00 4.18
2188 2317 1.104577 CCCTCCGTCTCCTAGCAGTC 61.105 65.000 0.00 0.00 0.00 3.51
2189 2318 1.076632 CCCTCCGTCTCCTAGCAGT 60.077 63.158 0.00 0.00 0.00 4.40
2190 2319 0.821711 CTCCCTCCGTCTCCTAGCAG 60.822 65.000 0.00 0.00 0.00 4.24
2191 2320 1.227664 CTCCCTCCGTCTCCTAGCA 59.772 63.158 0.00 0.00 0.00 3.49
2192 2321 0.820482 GTCTCCCTCCGTCTCCTAGC 60.820 65.000 0.00 0.00 0.00 3.42
2193 2322 0.179012 GGTCTCCCTCCGTCTCCTAG 60.179 65.000 0.00 0.00 0.00 3.02
2194 2323 0.917821 TGGTCTCCCTCCGTCTCCTA 60.918 60.000 0.00 0.00 0.00 2.94
2195 2324 2.239439 TGGTCTCCCTCCGTCTCCT 61.239 63.158 0.00 0.00 0.00 3.69
2196 2325 2.053277 GTGGTCTCCCTCCGTCTCC 61.053 68.421 0.00 0.00 0.00 3.71
2197 2326 1.304217 TGTGGTCTCCCTCCGTCTC 60.304 63.158 0.00 0.00 0.00 3.36
2198 2327 1.304547 CTGTGGTCTCCCTCCGTCT 60.305 63.158 0.00 0.00 0.00 4.18
2199 2328 0.684805 ATCTGTGGTCTCCCTCCGTC 60.685 60.000 0.00 0.00 0.00 4.79
2200 2329 0.684805 GATCTGTGGTCTCCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
2201 2330 0.684479 TGATCTGTGGTCTCCCTCCG 60.684 60.000 0.00 0.00 0.00 4.63
2202 2331 1.208293 GTTGATCTGTGGTCTCCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
2203 2332 1.134965 CGTTGATCTGTGGTCTCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
2204 2333 0.898320 CGTTGATCTGTGGTCTCCCT 59.102 55.000 0.00 0.00 0.00 4.20
2205 2334 0.108138 CCGTTGATCTGTGGTCTCCC 60.108 60.000 0.00 0.00 0.00 4.30
2206 2335 0.741221 GCCGTTGATCTGTGGTCTCC 60.741 60.000 0.00 0.00 0.00 3.71
2207 2336 0.741221 GGCCGTTGATCTGTGGTCTC 60.741 60.000 0.00 0.00 0.00 3.36
2208 2337 1.296715 GGCCGTTGATCTGTGGTCT 59.703 57.895 0.00 0.00 0.00 3.85
2209 2338 1.003839 TGGCCGTTGATCTGTGGTC 60.004 57.895 0.00 0.00 0.00 4.02
2210 2339 1.003355 CTGGCCGTTGATCTGTGGT 60.003 57.895 0.00 0.00 0.00 4.16
2211 2340 1.746615 CCTGGCCGTTGATCTGTGG 60.747 63.158 0.00 0.00 0.00 4.17
2212 2341 0.742281 CTCCTGGCCGTTGATCTGTG 60.742 60.000 0.00 0.00 0.00 3.66
2213 2342 1.599047 CTCCTGGCCGTTGATCTGT 59.401 57.895 0.00 0.00 0.00 3.41
2214 2343 1.153289 CCTCCTGGCCGTTGATCTG 60.153 63.158 0.00 0.00 0.00 2.90
2215 2344 2.370445 CCCTCCTGGCCGTTGATCT 61.370 63.158 0.00 0.00 0.00 2.75
2216 2345 2.190578 CCCTCCTGGCCGTTGATC 59.809 66.667 0.00 0.00 0.00 2.92
2217 2346 2.610859 ACCCTCCTGGCCGTTGAT 60.611 61.111 0.00 0.00 37.83 2.57
2218 2347 3.636231 CACCCTCCTGGCCGTTGA 61.636 66.667 0.00 0.00 37.83 3.18
2219 2348 3.901797 GACACCCTCCTGGCCGTTG 62.902 68.421 0.00 0.00 37.83 4.10
2220 2349 3.637273 GACACCCTCCTGGCCGTT 61.637 66.667 0.00 0.00 37.83 4.44
2224 2353 4.083862 GTCGGACACCCTCCTGGC 62.084 72.222 2.62 0.00 36.80 4.85
2225 2354 3.391382 GGTCGGACACCCTCCTGG 61.391 72.222 10.76 0.00 39.69 4.45
2232 2361 2.840717 AAATACGCGGGTCGGACACC 62.841 60.000 12.47 7.91 45.97 4.16
2233 2362 1.446618 AAATACGCGGGTCGGACAC 60.447 57.895 12.47 5.20 43.86 3.67
2234 2363 1.446445 CAAATACGCGGGTCGGACA 60.446 57.895 12.47 0.00 43.86 4.02
2235 2364 2.169146 CCAAATACGCGGGTCGGAC 61.169 63.158 12.47 0.00 43.86 4.79
2236 2365 2.184836 CCAAATACGCGGGTCGGA 59.815 61.111 12.47 0.00 43.86 4.55
2237 2366 2.893404 CCCAAATACGCGGGTCGG 60.893 66.667 12.47 5.87 43.86 4.79
2238 2367 3.569690 GCCCAAATACGCGGGTCG 61.570 66.667 12.47 0.00 45.07 4.79
2239 2368 1.310216 AAAGCCCAAATACGCGGGTC 61.310 55.000 12.47 0.00 45.07 4.46
2240 2369 1.303806 AAAGCCCAAATACGCGGGT 60.304 52.632 12.47 10.91 45.07 5.28
2241 2370 1.138671 CAAAGCCCAAATACGCGGG 59.861 57.895 12.47 0.82 46.15 6.13
2242 2371 1.138671 CCAAAGCCCAAATACGCGG 59.861 57.895 12.47 0.00 0.00 6.46
2243 2372 0.242555 AACCAAAGCCCAAATACGCG 59.757 50.000 3.53 3.53 0.00 6.01
2244 2373 2.448926 AAACCAAAGCCCAAATACGC 57.551 45.000 0.00 0.00 0.00 4.42
2245 2374 4.022329 AGAGAAAACCAAAGCCCAAATACG 60.022 41.667 0.00 0.00 0.00 3.06
2246 2375 5.468540 AGAGAAAACCAAAGCCCAAATAC 57.531 39.130 0.00 0.00 0.00 1.89
2247 2376 4.526650 GGAGAGAAAACCAAAGCCCAAATA 59.473 41.667 0.00 0.00 0.00 1.40
2248 2377 3.324846 GGAGAGAAAACCAAAGCCCAAAT 59.675 43.478 0.00 0.00 0.00 2.32
2249 2378 2.698274 GGAGAGAAAACCAAAGCCCAAA 59.302 45.455 0.00 0.00 0.00 3.28
2250 2379 2.316108 GGAGAGAAAACCAAAGCCCAA 58.684 47.619 0.00 0.00 0.00 4.12
2251 2380 1.216678 TGGAGAGAAAACCAAAGCCCA 59.783 47.619 0.00 0.00 32.93 5.36
2252 2381 1.613925 GTGGAGAGAAAACCAAAGCCC 59.386 52.381 0.00 0.00 37.94 5.19
2253 2382 2.306847 TGTGGAGAGAAAACCAAAGCC 58.693 47.619 0.00 0.00 37.94 4.35
2254 2383 4.590850 ATTGTGGAGAGAAAACCAAAGC 57.409 40.909 0.00 0.00 37.94 3.51
2255 2384 7.391554 TCATCTATTGTGGAGAGAAAACCAAAG 59.608 37.037 0.00 0.00 37.94 2.77
2256 2385 7.230747 TCATCTATTGTGGAGAGAAAACCAAA 58.769 34.615 0.00 0.00 37.94 3.28
2257 2386 6.778821 TCATCTATTGTGGAGAGAAAACCAA 58.221 36.000 0.00 0.00 37.94 3.67
2258 2387 6.373005 TCATCTATTGTGGAGAGAAAACCA 57.627 37.500 0.00 0.00 0.00 3.67
2259 2388 6.183360 CGTTCATCTATTGTGGAGAGAAAACC 60.183 42.308 0.00 0.00 28.90 3.27
2260 2389 6.183360 CCGTTCATCTATTGTGGAGAGAAAAC 60.183 42.308 0.00 0.00 0.00 2.43
2261 2390 5.874810 CCGTTCATCTATTGTGGAGAGAAAA 59.125 40.000 0.00 0.00 0.00 2.29
2262 2391 5.419542 CCGTTCATCTATTGTGGAGAGAAA 58.580 41.667 0.00 0.00 0.00 2.52
2263 2392 4.141937 CCCGTTCATCTATTGTGGAGAGAA 60.142 45.833 0.00 0.00 0.00 2.87
2264 2393 3.384789 CCCGTTCATCTATTGTGGAGAGA 59.615 47.826 0.00 0.00 0.00 3.10
2265 2394 3.384789 TCCCGTTCATCTATTGTGGAGAG 59.615 47.826 0.00 0.00 0.00 3.20
2266 2395 3.371034 TCCCGTTCATCTATTGTGGAGA 58.629 45.455 0.00 0.00 0.00 3.71
2267 2396 3.819564 TCCCGTTCATCTATTGTGGAG 57.180 47.619 0.00 0.00 0.00 3.86
2268 2397 4.513442 CTTTCCCGTTCATCTATTGTGGA 58.487 43.478 0.00 0.00 0.00 4.02
2269 2398 3.627577 CCTTTCCCGTTCATCTATTGTGG 59.372 47.826 0.00 0.00 0.00 4.17
2270 2399 3.627577 CCCTTTCCCGTTCATCTATTGTG 59.372 47.826 0.00 0.00 0.00 3.33
2271 2400 3.371595 CCCCTTTCCCGTTCATCTATTGT 60.372 47.826 0.00 0.00 0.00 2.71
2272 2401 3.118038 TCCCCTTTCCCGTTCATCTATTG 60.118 47.826 0.00 0.00 0.00 1.90
2273 2402 3.120108 TCCCCTTTCCCGTTCATCTATT 58.880 45.455 0.00 0.00 0.00 1.73
2274 2403 2.771688 TCCCCTTTCCCGTTCATCTAT 58.228 47.619 0.00 0.00 0.00 1.98
2275 2404 2.257391 TCCCCTTTCCCGTTCATCTA 57.743 50.000 0.00 0.00 0.00 1.98
2276 2405 1.282157 CTTCCCCTTTCCCGTTCATCT 59.718 52.381 0.00 0.00 0.00 2.90
2277 2406 1.004394 ACTTCCCCTTTCCCGTTCATC 59.996 52.381 0.00 0.00 0.00 2.92
2278 2407 1.073098 ACTTCCCCTTTCCCGTTCAT 58.927 50.000 0.00 0.00 0.00 2.57
2279 2408 0.109723 CACTTCCCCTTTCCCGTTCA 59.890 55.000 0.00 0.00 0.00 3.18
2280 2409 0.109913 ACACTTCCCCTTTCCCGTTC 59.890 55.000 0.00 0.00 0.00 3.95
2281 2410 1.437397 TACACTTCCCCTTTCCCGTT 58.563 50.000 0.00 0.00 0.00 4.44
2282 2411 1.437397 TTACACTTCCCCTTTCCCGT 58.563 50.000 0.00 0.00 0.00 5.28
2283 2412 2.801077 ATTACACTTCCCCTTTCCCG 57.199 50.000 0.00 0.00 0.00 5.14
2284 2413 5.188988 ACTTATTACACTTCCCCTTTCCC 57.811 43.478 0.00 0.00 0.00 3.97
2285 2414 6.827251 CCTTACTTATTACACTTCCCCTTTCC 59.173 42.308 0.00 0.00 0.00 3.13
2286 2415 6.827251 CCCTTACTTATTACACTTCCCCTTTC 59.173 42.308 0.00 0.00 0.00 2.62
2287 2416 6.506413 TCCCTTACTTATTACACTTCCCCTTT 59.494 38.462 0.00 0.00 0.00 3.11
2288 2417 6.034003 TCCCTTACTTATTACACTTCCCCTT 58.966 40.000 0.00 0.00 0.00 3.95
2289 2418 5.606761 TCCCTTACTTATTACACTTCCCCT 58.393 41.667 0.00 0.00 0.00 4.79
2290 2419 5.963214 TCCCTTACTTATTACACTTCCCC 57.037 43.478 0.00 0.00 0.00 4.81
2291 2420 6.714278 TGTTCCCTTACTTATTACACTTCCC 58.286 40.000 0.00 0.00 0.00 3.97
2292 2421 8.265764 AGATGTTCCCTTACTTATTACACTTCC 58.734 37.037 0.00 0.00 0.00 3.46
2293 2422 9.315525 GAGATGTTCCCTTACTTATTACACTTC 57.684 37.037 0.00 0.00 0.00 3.01
2294 2423 8.265764 GGAGATGTTCCCTTACTTATTACACTT 58.734 37.037 0.00 0.00 40.37 3.16
2295 2424 7.417570 CGGAGATGTTCCCTTACTTATTACACT 60.418 40.741 0.00 0.00 43.63 3.55
2296 2425 6.700520 CGGAGATGTTCCCTTACTTATTACAC 59.299 42.308 0.00 0.00 43.63 2.90
2297 2426 6.183360 CCGGAGATGTTCCCTTACTTATTACA 60.183 42.308 0.00 0.00 43.63 2.41
2298 2427 6.183360 ACCGGAGATGTTCCCTTACTTATTAC 60.183 42.308 9.46 0.00 43.63 1.89
2299 2428 5.901276 ACCGGAGATGTTCCCTTACTTATTA 59.099 40.000 9.46 0.00 43.63 0.98
2300 2429 4.720273 ACCGGAGATGTTCCCTTACTTATT 59.280 41.667 9.46 0.00 43.63 1.40
2301 2430 4.296056 ACCGGAGATGTTCCCTTACTTAT 58.704 43.478 9.46 0.00 43.63 1.73
2302 2431 3.716431 ACCGGAGATGTTCCCTTACTTA 58.284 45.455 9.46 0.00 43.63 2.24
2303 2432 2.547990 ACCGGAGATGTTCCCTTACTT 58.452 47.619 9.46 0.00 43.63 2.24
2304 2433 2.236395 CAACCGGAGATGTTCCCTTACT 59.764 50.000 9.46 0.00 43.63 2.24
2305 2434 2.629051 CAACCGGAGATGTTCCCTTAC 58.371 52.381 9.46 0.00 43.63 2.34
2306 2435 1.557832 CCAACCGGAGATGTTCCCTTA 59.442 52.381 9.46 0.00 43.63 2.69
2307 2436 0.328258 CCAACCGGAGATGTTCCCTT 59.672 55.000 9.46 0.00 43.63 3.95
2308 2437 0.546747 TCCAACCGGAGATGTTCCCT 60.547 55.000 9.46 0.00 43.63 4.20
2309 2438 0.326927 TTCCAACCGGAGATGTTCCC 59.673 55.000 9.46 0.00 44.10 3.97
2310 2439 2.420058 ATTCCAACCGGAGATGTTCC 57.580 50.000 9.46 0.00 44.10 3.62
2311 2440 2.423538 CCAATTCCAACCGGAGATGTTC 59.576 50.000 9.46 0.00 44.10 3.18
2312 2441 2.446435 CCAATTCCAACCGGAGATGTT 58.554 47.619 9.46 0.00 44.10 2.71
2313 2442 1.340991 CCCAATTCCAACCGGAGATGT 60.341 52.381 9.46 0.00 44.10 3.06
2314 2443 1.392589 CCCAATTCCAACCGGAGATG 58.607 55.000 9.46 3.78 44.10 2.90
2315 2444 0.395724 GCCCAATTCCAACCGGAGAT 60.396 55.000 9.46 0.00 44.10 2.75
2316 2445 1.001393 GCCCAATTCCAACCGGAGA 60.001 57.895 9.46 0.00 44.10 3.71
2317 2446 2.052104 GGCCCAATTCCAACCGGAG 61.052 63.158 9.46 0.00 44.10 4.63
2318 2447 2.036572 GGCCCAATTCCAACCGGA 59.963 61.111 9.46 0.00 40.60 5.14
2319 2448 1.604147 GAAGGCCCAATTCCAACCGG 61.604 60.000 0.00 0.00 0.00 5.28
2320 2449 1.604147 GGAAGGCCCAATTCCAACCG 61.604 60.000 15.65 0.00 44.74 4.44
2321 2450 1.604147 CGGAAGGCCCAATTCCAACC 61.604 60.000 19.34 1.94 45.50 3.77
2322 2451 0.898326 ACGGAAGGCCCAATTCCAAC 60.898 55.000 19.34 0.00 45.50 3.77
2323 2452 0.897863 CACGGAAGGCCCAATTCCAA 60.898 55.000 19.34 0.00 45.50 3.53
2324 2453 1.304052 CACGGAAGGCCCAATTCCA 60.304 57.895 19.34 0.00 45.50 3.53
2325 2454 2.052104 CCACGGAAGGCCCAATTCC 61.052 63.158 11.45 11.45 42.41 3.01
2326 2455 0.610785 TTCCACGGAAGGCCCAATTC 60.611 55.000 0.00 0.00 34.14 2.17
2327 2456 0.898326 GTTCCACGGAAGGCCCAATT 60.898 55.000 0.00 0.00 34.49 2.32
2328 2457 1.304134 GTTCCACGGAAGGCCCAAT 60.304 57.895 0.00 0.00 34.49 3.16
2329 2458 2.114411 GTTCCACGGAAGGCCCAA 59.886 61.111 0.00 0.00 34.49 4.12
2330 2459 2.075355 ATTGTTCCACGGAAGGCCCA 62.075 55.000 0.00 0.00 34.49 5.36
2331 2460 0.898326 AATTGTTCCACGGAAGGCCC 60.898 55.000 0.00 0.00 34.49 5.80
2332 2461 1.743394 CTAATTGTTCCACGGAAGGCC 59.257 52.381 0.00 0.00 34.49 5.19
2333 2462 2.678336 CTCTAATTGTTCCACGGAAGGC 59.322 50.000 0.00 0.00 34.49 4.35
2334 2463 2.678336 GCTCTAATTGTTCCACGGAAGG 59.322 50.000 0.00 0.00 34.49 3.46
2335 2464 3.334691 TGCTCTAATTGTTCCACGGAAG 58.665 45.455 0.00 0.00 34.49 3.46
2336 2465 3.410631 TGCTCTAATTGTTCCACGGAA 57.589 42.857 0.00 0.00 0.00 4.30
2337 2466 3.197766 AGATGCTCTAATTGTTCCACGGA 59.802 43.478 0.00 0.00 0.00 4.69
2338 2467 3.310774 CAGATGCTCTAATTGTTCCACGG 59.689 47.826 0.00 0.00 0.00 4.94
2339 2468 4.183865 TCAGATGCTCTAATTGTTCCACG 58.816 43.478 0.00 0.00 0.00 4.94
2340 2469 4.034975 GCTCAGATGCTCTAATTGTTCCAC 59.965 45.833 0.00 0.00 0.00 4.02
2341 2470 4.194640 GCTCAGATGCTCTAATTGTTCCA 58.805 43.478 0.00 0.00 0.00 3.53
2342 2471 4.194640 TGCTCAGATGCTCTAATTGTTCC 58.805 43.478 0.00 0.00 0.00 3.62
2343 2472 5.353678 AGTTGCTCAGATGCTCTAATTGTTC 59.646 40.000 0.00 0.00 0.00 3.18
2344 2473 5.251764 AGTTGCTCAGATGCTCTAATTGTT 58.748 37.500 0.00 0.00 0.00 2.83
2345 2474 4.841422 AGTTGCTCAGATGCTCTAATTGT 58.159 39.130 0.00 0.00 0.00 2.71
2346 2475 5.117584 AGAGTTGCTCAGATGCTCTAATTG 58.882 41.667 0.00 0.00 35.09 2.32
2347 2476 5.356291 AGAGTTGCTCAGATGCTCTAATT 57.644 39.130 0.00 0.00 35.09 1.40
2348 2477 5.509501 GCTAGAGTTGCTCAGATGCTCTAAT 60.510 44.000 0.00 0.00 38.03 1.73
2349 2478 4.202101 GCTAGAGTTGCTCAGATGCTCTAA 60.202 45.833 0.00 0.00 38.03 2.10
2350 2479 3.317711 GCTAGAGTTGCTCAGATGCTCTA 59.682 47.826 0.00 0.00 37.64 2.43
2351 2480 2.101249 GCTAGAGTTGCTCAGATGCTCT 59.899 50.000 0.00 0.00 39.52 4.09
2352 2481 2.159128 TGCTAGAGTTGCTCAGATGCTC 60.159 50.000 0.00 0.00 32.06 4.26
2353 2482 1.829849 TGCTAGAGTTGCTCAGATGCT 59.170 47.619 0.00 0.00 32.06 3.79
2354 2483 2.159128 TCTGCTAGAGTTGCTCAGATGC 60.159 50.000 0.00 0.00 32.06 3.91
2355 2484 3.797451 TCTGCTAGAGTTGCTCAGATG 57.203 47.619 0.00 0.00 32.06 2.90
2356 2485 5.105023 TGAAATCTGCTAGAGTTGCTCAGAT 60.105 40.000 0.00 0.00 43.85 2.90
2357 2486 4.221482 TGAAATCTGCTAGAGTTGCTCAGA 59.779 41.667 0.00 0.00 32.11 3.27
2358 2487 4.502016 TGAAATCTGCTAGAGTTGCTCAG 58.498 43.478 0.00 0.00 32.11 3.35
2359 2488 4.541973 TGAAATCTGCTAGAGTTGCTCA 57.458 40.909 0.00 0.00 32.11 4.26
2360 2489 7.405769 GTTTATGAAATCTGCTAGAGTTGCTC 58.594 38.462 0.00 0.00 32.11 4.26
2361 2490 6.317391 GGTTTATGAAATCTGCTAGAGTTGCT 59.683 38.462 0.00 0.00 32.11 3.91
2362 2491 6.317391 AGGTTTATGAAATCTGCTAGAGTTGC 59.683 38.462 0.00 0.00 32.11 4.17
2363 2492 7.856145 AGGTTTATGAAATCTGCTAGAGTTG 57.144 36.000 0.00 0.00 32.11 3.16
2364 2493 7.278868 CGAAGGTTTATGAAATCTGCTAGAGTT 59.721 37.037 0.00 0.00 34.97 3.01
2365 2494 6.758886 CGAAGGTTTATGAAATCTGCTAGAGT 59.241 38.462 0.00 0.00 30.76 3.24
2366 2495 6.758886 ACGAAGGTTTATGAAATCTGCTAGAG 59.241 38.462 0.00 0.00 30.76 2.43
2367 2496 6.640518 ACGAAGGTTTATGAAATCTGCTAGA 58.359 36.000 0.00 0.00 30.76 2.43
2368 2497 6.018669 GGACGAAGGTTTATGAAATCTGCTAG 60.019 42.308 0.00 0.00 30.76 3.42
2369 2498 5.815740 GGACGAAGGTTTATGAAATCTGCTA 59.184 40.000 0.00 0.00 30.76 3.49
2370 2499 4.636206 GGACGAAGGTTTATGAAATCTGCT 59.364 41.667 0.00 0.00 30.76 4.24
2371 2500 4.636206 AGGACGAAGGTTTATGAAATCTGC 59.364 41.667 0.00 0.00 30.76 4.26
2372 2501 6.743575 AAGGACGAAGGTTTATGAAATCTG 57.256 37.500 0.00 0.00 30.76 2.90
2373 2502 8.857694 TTAAAGGACGAAGGTTTATGAAATCT 57.142 30.769 0.00 0.00 31.88 2.40
2374 2503 9.902196 TTTTAAAGGACGAAGGTTTATGAAATC 57.098 29.630 0.00 0.00 0.00 2.17
2376 2505 9.902196 GATTTTAAAGGACGAAGGTTTATGAAA 57.098 29.630 0.00 0.00 0.00 2.69
2377 2506 9.069082 TGATTTTAAAGGACGAAGGTTTATGAA 57.931 29.630 0.00 0.00 0.00 2.57
2378 2507 8.624367 TGATTTTAAAGGACGAAGGTTTATGA 57.376 30.769 0.00 0.00 0.00 2.15
2379 2508 9.855021 AATGATTTTAAAGGACGAAGGTTTATG 57.145 29.630 0.00 0.00 0.00 1.90
2399 2528 8.647226 GCGTTTTGCAGTATCTTTAAAATGATT 58.353 29.630 0.00 0.00 45.45 2.57
2400 2529 8.173321 GCGTTTTGCAGTATCTTTAAAATGAT 57.827 30.769 0.00 0.00 45.45 2.45
2401 2530 7.561237 GCGTTTTGCAGTATCTTTAAAATGA 57.439 32.000 0.00 0.00 45.45 2.57
2417 2546 5.005299 ACAGAACATTGTAAAAGCGTTTTGC 59.995 36.000 2.19 3.13 46.98 3.68
2418 2547 6.567769 ACAGAACATTGTAAAAGCGTTTTG 57.432 33.333 2.19 0.00 34.19 2.44
2419 2548 7.589574 AAACAGAACATTGTAAAAGCGTTTT 57.410 28.000 2.19 1.29 36.67 2.43
2420 2549 7.589574 AAAACAGAACATTGTAAAAGCGTTT 57.410 28.000 2.53 2.53 0.00 3.60
2421 2550 7.589574 AAAAACAGAACATTGTAAAAGCGTT 57.410 28.000 0.00 0.00 0.00 4.84
2422 2551 8.588789 GTTAAAAACAGAACATTGTAAAAGCGT 58.411 29.630 0.00 0.00 0.00 5.07
2423 2552 8.053653 GGTTAAAAACAGAACATTGTAAAAGCG 58.946 33.333 0.00 0.00 0.00 4.68
2424 2553 8.874816 TGGTTAAAAACAGAACATTGTAAAAGC 58.125 29.630 0.00 0.00 0.00 3.51
2430 2559 8.878769 GTCATTTGGTTAAAAACAGAACATTGT 58.121 29.630 0.00 0.00 0.00 2.71
2431 2560 8.877779 TGTCATTTGGTTAAAAACAGAACATTG 58.122 29.630 0.00 0.00 0.00 2.82
2432 2561 9.612066 ATGTCATTTGGTTAAAAACAGAACATT 57.388 25.926 0.00 0.00 32.54 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.