Multiple sequence alignment - TraesCS6A01G171500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G171500 chr6A 100.000 2860 0 0 1 2860 182419602 182416743 0.000000e+00 5282
1 TraesCS6A01G171500 chr6A 92.987 1868 83 23 566 2395 137393776 137391919 0.000000e+00 2680
2 TraesCS6A01G171500 chr6A 93.643 582 17 4 1 582 137492694 137492133 0.000000e+00 852
3 TraesCS6A01G171500 chr2A 96.082 2399 85 5 3 2395 778649533 778651928 0.000000e+00 3901
4 TraesCS6A01G171500 chr3B 94.688 1619 57 10 1 1596 473236450 473238062 0.000000e+00 2486
5 TraesCS6A01G171500 chr3B 92.543 979 61 12 1424 2395 473237924 473238897 0.000000e+00 1393
6 TraesCS6A01G171500 chr7B 94.266 1622 66 7 1 1596 51884562 51886182 0.000000e+00 2455
7 TraesCS6A01G171500 chr7B 91.837 980 67 11 1423 2396 51886043 51887015 0.000000e+00 1354
8 TraesCS6A01G171500 chr7B 81.517 633 84 21 2 602 73168533 73169164 9.210000e-135 490
9 TraesCS6A01G171500 chr7A 94.500 1600 65 7 1 1596 126149309 126150889 0.000000e+00 2446
10 TraesCS6A01G171500 chr7A 89.836 974 71 16 1429 2395 126150757 126151709 0.000000e+00 1225
11 TraesCS6A01G171500 chr6B 94.074 1620 70 9 1 1596 48080247 48081864 0.000000e+00 2436
12 TraesCS6A01G171500 chr6B 91.212 990 73 13 1423 2406 48081725 48082706 0.000000e+00 1334
13 TraesCS6A01G171500 chr4B 93.762 1619 75 8 1 1596 321542796 321544411 0.000000e+00 2407
14 TraesCS6A01G171500 chr4B 93.730 1595 74 8 25 1596 587099150 587100741 0.000000e+00 2368
15 TraesCS6A01G171500 chr4B 91.895 987 58 17 1424 2398 321544273 321545249 0.000000e+00 1360
16 TraesCS6A01G171500 chr4B 91.726 979 70 11 1423 2396 587100604 587101576 0.000000e+00 1349
17 TraesCS6A01G171500 chr6D 91.213 956 68 10 1455 2399 16251830 16252780 0.000000e+00 1286
18 TraesCS6A01G171500 chr5A 81.321 1590 217 43 7 1549 514148865 514147309 0.000000e+00 1218
19 TraesCS6A01G171500 chr4D 93.376 468 28 3 2395 2860 32008467 32008001 0.000000e+00 689
20 TraesCS6A01G171500 chr5D 93.191 470 28 3 2395 2860 351821761 351822230 0.000000e+00 688
21 TraesCS6A01G171500 chr2D 93.177 469 29 2 2395 2860 636579876 636579408 0.000000e+00 686
22 TraesCS6A01G171500 chr2D 92.964 469 30 2 2395 2860 568371016 568370548 0.000000e+00 680
23 TraesCS6A01G171500 chr7D 92.964 469 30 2 2395 2860 281406589 281406121 0.000000e+00 680
24 TraesCS6A01G171500 chr7D 92.766 470 29 5 2395 2860 374764502 374764970 0.000000e+00 675
25 TraesCS6A01G171500 chr7D 82.196 601 78 12 2 574 83759531 83760130 9.210000e-135 490
26 TraesCS6A01G171500 chr1D 92.964 469 28 4 2396 2860 442652280 442651813 0.000000e+00 678
27 TraesCS6A01G171500 chr1D 92.537 469 32 3 2395 2860 101629581 101630049 0.000000e+00 669
28 TraesCS6A01G171500 chr1D 92.537 469 32 2 2395 2860 216190520 216190988 0.000000e+00 669


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G171500 chr6A 182416743 182419602 2859 True 5282.0 5282 100.0000 1 2860 1 chr6A.!!$R3 2859
1 TraesCS6A01G171500 chr6A 137391919 137393776 1857 True 2680.0 2680 92.9870 566 2395 1 chr6A.!!$R1 1829
2 TraesCS6A01G171500 chr6A 137492133 137492694 561 True 852.0 852 93.6430 1 582 1 chr6A.!!$R2 581
3 TraesCS6A01G171500 chr2A 778649533 778651928 2395 False 3901.0 3901 96.0820 3 2395 1 chr2A.!!$F1 2392
4 TraesCS6A01G171500 chr3B 473236450 473238897 2447 False 1939.5 2486 93.6155 1 2395 2 chr3B.!!$F1 2394
5 TraesCS6A01G171500 chr7B 51884562 51887015 2453 False 1904.5 2455 93.0515 1 2396 2 chr7B.!!$F2 2395
6 TraesCS6A01G171500 chr7B 73168533 73169164 631 False 490.0 490 81.5170 2 602 1 chr7B.!!$F1 600
7 TraesCS6A01G171500 chr7A 126149309 126151709 2400 False 1835.5 2446 92.1680 1 2395 2 chr7A.!!$F1 2394
8 TraesCS6A01G171500 chr6B 48080247 48082706 2459 False 1885.0 2436 92.6430 1 2406 2 chr6B.!!$F1 2405
9 TraesCS6A01G171500 chr4B 321542796 321545249 2453 False 1883.5 2407 92.8285 1 2398 2 chr4B.!!$F1 2397
10 TraesCS6A01G171500 chr4B 587099150 587101576 2426 False 1858.5 2368 92.7280 25 2396 2 chr4B.!!$F2 2371
11 TraesCS6A01G171500 chr6D 16251830 16252780 950 False 1286.0 1286 91.2130 1455 2399 1 chr6D.!!$F1 944
12 TraesCS6A01G171500 chr5A 514147309 514148865 1556 True 1218.0 1218 81.3210 7 1549 1 chr5A.!!$R1 1542
13 TraesCS6A01G171500 chr7D 83759531 83760130 599 False 490.0 490 82.1960 2 574 1 chr7D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 977 1.151668 CTGAAGGCTTTGGTGAGACG 58.848 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2412 2569 0.033699 AAATCCCTGCTTCCCTCTGC 60.034 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
609 659 4.095410 TCCTTGTTAATGCTGAATTGCG 57.905 40.909 0.00 0.00 35.36 4.85
612 662 3.913548 TGTTAATGCTGAATTGCGTGT 57.086 38.095 0.00 0.00 35.36 4.49
682 732 3.671716 ACCGGAAGATGTTGTACCTTTC 58.328 45.455 9.46 0.00 0.00 2.62
684 734 3.007635 CGGAAGATGTTGTACCTTTCCC 58.992 50.000 0.00 0.00 0.00 3.97
734 813 6.508777 TCGTTGCCTTTTTGTATAGCTTTTT 58.491 32.000 0.00 0.00 0.00 1.94
897 977 1.151668 CTGAAGGCTTTGGTGAGACG 58.848 55.000 0.00 0.00 0.00 4.18
971 1051 3.454082 GAGGACTTGATCTCAACAGGGAT 59.546 47.826 0.00 0.00 0.00 3.85
1109 1189 3.472283 AGATGTCAATAGCCAGCTGAG 57.528 47.619 17.39 6.56 0.00 3.35
1251 1332 1.068741 CTTAGCTTTACCGGGAGCGAT 59.931 52.381 17.43 7.21 43.53 4.58
1255 1336 1.272769 GCTTTACCGGGAGCGATATCT 59.727 52.381 6.32 0.00 0.00 1.98
1262 1343 1.341531 CGGGAGCGATATCTTTGAGGT 59.658 52.381 0.34 0.00 0.00 3.85
1267 1348 3.201290 AGCGATATCTTTGAGGTTGCAG 58.799 45.455 0.34 0.00 0.00 4.41
1299 1380 4.751098 GCTAAAGCTCCAGATCAGATGAAG 59.249 45.833 0.00 0.00 38.21 3.02
1445 1540 3.897505 TCTGATTGGCTAGCTGCTATACA 59.102 43.478 15.72 9.34 42.39 2.29
1942 2090 5.914635 CGATGAAAAAGCTACTTTGCAAGAA 59.085 36.000 0.00 0.00 33.64 2.52
2001 2149 9.707957 ATAATTTTGGGGACTAATCATGTTGTA 57.292 29.630 0.00 0.00 0.00 2.41
2209 2364 8.442632 TGTCAAATTGCATGAATTTAAAACCA 57.557 26.923 0.00 0.00 41.50 3.67
2355 2512 0.768622 CCCCAGTGACCTGTTACCAA 59.231 55.000 0.00 0.00 36.95 3.67
2388 2545 1.971695 CCGGCCAGAGAACCAAACC 60.972 63.158 2.24 0.00 0.00 3.27
2399 2556 3.842436 GAGAACCAAACCCCTCCTAAGTA 59.158 47.826 0.00 0.00 0.00 2.24
2401 2558 3.572661 ACCAAACCCCTCCTAAGTAGA 57.427 47.619 0.00 0.00 0.00 2.59
2402 2559 4.090027 ACCAAACCCCTCCTAAGTAGAT 57.910 45.455 0.00 0.00 0.00 1.98
2403 2560 5.230746 ACCAAACCCCTCCTAAGTAGATA 57.769 43.478 0.00 0.00 0.00 1.98
2405 2562 4.593634 CCAAACCCCTCCTAAGTAGATAGG 59.406 50.000 0.00 0.00 43.29 2.57
2406 2563 3.546429 ACCCCTCCTAAGTAGATAGGC 57.454 52.381 0.00 0.00 41.93 3.93
2407 2564 2.112151 ACCCCTCCTAAGTAGATAGGCC 59.888 54.545 0.00 0.00 41.93 5.19
2408 2565 2.111972 CCCCTCCTAAGTAGATAGGCCA 59.888 54.545 5.01 0.00 41.93 5.36
2409 2566 3.246167 CCCCTCCTAAGTAGATAGGCCAT 60.246 52.174 5.01 0.00 41.93 4.40
2410 2567 4.430441 CCCTCCTAAGTAGATAGGCCATT 58.570 47.826 5.01 0.00 41.93 3.16
2411 2568 4.846940 CCCTCCTAAGTAGATAGGCCATTT 59.153 45.833 5.01 0.00 41.93 2.32
2412 2569 5.280215 CCCTCCTAAGTAGATAGGCCATTTG 60.280 48.000 5.01 0.00 41.93 2.32
2413 2570 5.228945 TCCTAAGTAGATAGGCCATTTGC 57.771 43.478 5.01 0.00 41.93 3.68
2414 2571 4.658435 TCCTAAGTAGATAGGCCATTTGCA 59.342 41.667 5.01 0.00 41.93 4.08
2415 2572 4.999950 CCTAAGTAGATAGGCCATTTGCAG 59.000 45.833 5.01 0.00 43.89 4.41
2416 2573 4.778213 AAGTAGATAGGCCATTTGCAGA 57.222 40.909 5.01 0.00 43.89 4.26
2417 2574 4.348863 AGTAGATAGGCCATTTGCAGAG 57.651 45.455 5.01 0.00 43.89 3.35
2418 2575 2.653234 AGATAGGCCATTTGCAGAGG 57.347 50.000 5.01 0.00 43.89 3.69
2419 2576 1.144503 AGATAGGCCATTTGCAGAGGG 59.855 52.381 5.01 3.08 43.89 4.30
2420 2577 1.143684 GATAGGCCATTTGCAGAGGGA 59.856 52.381 12.76 0.00 43.89 4.20
2421 2578 0.998928 TAGGCCATTTGCAGAGGGAA 59.001 50.000 12.76 0.00 43.89 3.97
2422 2579 0.324091 AGGCCATTTGCAGAGGGAAG 60.324 55.000 12.76 0.00 43.89 3.46
2423 2580 1.514553 GCCATTTGCAGAGGGAAGC 59.485 57.895 12.76 0.00 40.77 3.86
2424 2581 1.252904 GCCATTTGCAGAGGGAAGCA 61.253 55.000 12.76 0.00 40.77 3.91
2425 2582 0.815734 CCATTTGCAGAGGGAAGCAG 59.184 55.000 0.79 0.00 42.39 4.24
2426 2583 0.815734 CATTTGCAGAGGGAAGCAGG 59.184 55.000 0.00 0.00 42.39 4.85
2427 2584 0.324091 ATTTGCAGAGGGAAGCAGGG 60.324 55.000 0.00 0.00 42.39 4.45
2428 2585 1.426251 TTTGCAGAGGGAAGCAGGGA 61.426 55.000 0.00 0.00 42.39 4.20
2429 2586 1.210204 TTGCAGAGGGAAGCAGGGAT 61.210 55.000 0.00 0.00 42.39 3.85
2430 2587 1.210204 TGCAGAGGGAAGCAGGGATT 61.210 55.000 0.00 0.00 35.51 3.01
2431 2588 0.033699 GCAGAGGGAAGCAGGGATTT 60.034 55.000 0.00 0.00 0.00 2.17
2432 2589 1.760192 CAGAGGGAAGCAGGGATTTG 58.240 55.000 0.00 0.00 0.00 2.32
2433 2590 0.033699 AGAGGGAAGCAGGGATTTGC 60.034 55.000 0.00 0.00 44.41 3.68
2434 2591 0.323725 GAGGGAAGCAGGGATTTGCA 60.324 55.000 0.52 0.00 46.47 4.08
2435 2592 0.114954 AGGGAAGCAGGGATTTGCAA 59.885 50.000 0.00 0.00 46.47 4.08
2436 2593 0.975887 GGGAAGCAGGGATTTGCAAA 59.024 50.000 15.44 15.44 46.47 3.68
2437 2594 1.066645 GGGAAGCAGGGATTTGCAAAG 60.067 52.381 18.19 4.53 46.47 2.77
2438 2595 1.066645 GGAAGCAGGGATTTGCAAAGG 60.067 52.381 18.19 5.73 46.47 3.11
2439 2596 1.620323 GAAGCAGGGATTTGCAAAGGT 59.380 47.619 18.19 6.15 46.47 3.50
2440 2597 0.971386 AGCAGGGATTTGCAAAGGTG 59.029 50.000 18.19 12.19 46.47 4.00
2449 2606 3.272031 GCAAAGGTGCCAGAGCTC 58.728 61.111 5.27 5.27 45.68 4.09
2450 2607 2.684843 GCAAAGGTGCCAGAGCTCG 61.685 63.158 8.37 3.24 45.68 5.03
2451 2608 1.004560 CAAAGGTGCCAGAGCTCGA 60.005 57.895 8.37 0.00 40.80 4.04
2452 2609 1.018226 CAAAGGTGCCAGAGCTCGAG 61.018 60.000 8.45 8.45 40.80 4.04
2453 2610 1.476007 AAAGGTGCCAGAGCTCGAGT 61.476 55.000 15.13 0.23 40.80 4.18
2454 2611 1.476007 AAGGTGCCAGAGCTCGAGTT 61.476 55.000 15.13 8.18 40.80 3.01
2455 2612 1.004440 GGTGCCAGAGCTCGAGTTT 60.004 57.895 15.13 2.46 40.80 2.66
2456 2613 0.603975 GGTGCCAGAGCTCGAGTTTT 60.604 55.000 15.13 0.00 40.80 2.43
2457 2614 1.230324 GTGCCAGAGCTCGAGTTTTT 58.770 50.000 15.13 0.00 40.80 1.94
2458 2615 2.413837 GTGCCAGAGCTCGAGTTTTTA 58.586 47.619 15.13 0.00 40.80 1.52
2459 2616 2.806244 GTGCCAGAGCTCGAGTTTTTAA 59.194 45.455 15.13 0.00 40.80 1.52
2460 2617 3.250040 GTGCCAGAGCTCGAGTTTTTAAA 59.750 43.478 15.13 0.00 40.80 1.52
2461 2618 3.880490 TGCCAGAGCTCGAGTTTTTAAAA 59.120 39.130 15.13 0.00 40.80 1.52
2462 2619 4.219802 GCCAGAGCTCGAGTTTTTAAAAC 58.780 43.478 15.13 12.16 35.50 2.43
2463 2620 4.261031 GCCAGAGCTCGAGTTTTTAAAACA 60.261 41.667 20.62 1.73 35.50 2.83
2464 2621 5.444122 CCAGAGCTCGAGTTTTTAAAACAG 58.556 41.667 20.62 14.30 0.00 3.16
2465 2622 5.236478 CCAGAGCTCGAGTTTTTAAAACAGA 59.764 40.000 20.62 17.12 0.00 3.41
2466 2623 6.358762 CAGAGCTCGAGTTTTTAAAACAGAG 58.641 40.000 26.23 26.23 33.46 3.35
2467 2624 6.201044 CAGAGCTCGAGTTTTTAAAACAGAGA 59.799 38.462 30.57 21.25 32.67 3.10
2468 2625 6.931840 AGAGCTCGAGTTTTTAAAACAGAGAT 59.068 34.615 30.57 27.75 32.67 2.75
2469 2626 8.088981 AGAGCTCGAGTTTTTAAAACAGAGATA 58.911 33.333 30.57 11.35 32.67 1.98
2470 2627 8.603242 AGCTCGAGTTTTTAAAACAGAGATAA 57.397 30.769 30.57 10.61 32.67 1.75
2471 2628 9.052759 AGCTCGAGTTTTTAAAACAGAGATAAA 57.947 29.630 30.57 9.65 32.67 1.40
2472 2629 9.827411 GCTCGAGTTTTTAAAACAGAGATAAAT 57.173 29.630 30.57 10.15 32.67 1.40
2500 2657 6.899393 TTTTGAGAGGTATGCTTTCATTGT 57.101 33.333 0.00 0.00 34.22 2.71
2501 2658 6.500684 TTTGAGAGGTATGCTTTCATTGTC 57.499 37.500 0.00 0.00 34.22 3.18
2502 2659 5.164620 TGAGAGGTATGCTTTCATTGTCA 57.835 39.130 0.00 0.00 34.22 3.58
2503 2660 5.559770 TGAGAGGTATGCTTTCATTGTCAA 58.440 37.500 0.00 0.00 34.22 3.18
2504 2661 5.412594 TGAGAGGTATGCTTTCATTGTCAAC 59.587 40.000 0.00 0.00 34.22 3.18
2505 2662 5.316167 AGAGGTATGCTTTCATTGTCAACA 58.684 37.500 0.00 0.00 34.22 3.33
2506 2663 5.948162 AGAGGTATGCTTTCATTGTCAACAT 59.052 36.000 0.00 0.00 34.22 2.71
2507 2664 7.112122 AGAGGTATGCTTTCATTGTCAACATA 58.888 34.615 0.00 0.00 34.22 2.29
2508 2665 7.611467 AGAGGTATGCTTTCATTGTCAACATAA 59.389 33.333 0.00 0.00 34.22 1.90
2509 2666 7.538575 AGGTATGCTTTCATTGTCAACATAAC 58.461 34.615 0.00 0.00 34.22 1.89
2510 2667 7.176515 AGGTATGCTTTCATTGTCAACATAACA 59.823 33.333 8.53 0.00 34.22 2.41
2511 2668 7.812191 GGTATGCTTTCATTGTCAACATAACAA 59.188 33.333 0.00 0.00 40.63 2.83
2512 2669 7.642071 ATGCTTTCATTGTCAACATAACAAC 57.358 32.000 0.00 0.00 39.29 3.32
2513 2670 5.982516 TGCTTTCATTGTCAACATAACAACC 59.017 36.000 0.00 0.00 39.29 3.77
2514 2671 5.982516 GCTTTCATTGTCAACATAACAACCA 59.017 36.000 0.00 0.00 39.29 3.67
2515 2672 6.478344 GCTTTCATTGTCAACATAACAACCAA 59.522 34.615 0.00 0.00 39.29 3.67
2516 2673 7.171337 GCTTTCATTGTCAACATAACAACCAAT 59.829 33.333 0.00 0.00 39.29 3.16
2517 2674 9.689976 CTTTCATTGTCAACATAACAACCAATA 57.310 29.630 0.00 0.00 39.29 1.90
2533 2690 9.886132 AACAACCAATATATATCGGTATCTTCC 57.114 33.333 5.76 0.00 0.00 3.46
2534 2691 9.042450 ACAACCAATATATATCGGTATCTTCCA 57.958 33.333 5.76 0.00 0.00 3.53
2537 2694 8.150945 ACCAATATATATCGGTATCTTCCATGC 58.849 37.037 3.35 0.00 0.00 4.06
2538 2695 8.370940 CCAATATATATCGGTATCTTCCATGCT 58.629 37.037 0.00 0.00 0.00 3.79
2541 2698 7.898014 ATATATCGGTATCTTCCATGCTACA 57.102 36.000 0.00 0.00 0.00 2.74
2542 2699 6.798427 ATATCGGTATCTTCCATGCTACAT 57.202 37.500 0.00 0.00 0.00 2.29
2543 2700 7.898014 ATATCGGTATCTTCCATGCTACATA 57.102 36.000 0.00 0.00 0.00 2.29
2544 2701 5.386958 TCGGTATCTTCCATGCTACATAC 57.613 43.478 0.00 0.00 0.00 2.39
2545 2702 4.830600 TCGGTATCTTCCATGCTACATACA 59.169 41.667 0.00 0.00 0.00 2.29
2546 2703 5.480422 TCGGTATCTTCCATGCTACATACAT 59.520 40.000 0.00 0.00 0.00 2.29
2547 2704 6.014584 TCGGTATCTTCCATGCTACATACATT 60.015 38.462 0.00 0.00 0.00 2.71
2548 2705 7.177744 TCGGTATCTTCCATGCTACATACATTA 59.822 37.037 0.00 0.00 0.00 1.90
2549 2706 7.981789 CGGTATCTTCCATGCTACATACATTAT 59.018 37.037 0.00 0.00 0.00 1.28
2553 2710 7.331026 TCTTCCATGCTACATACATTATAGGC 58.669 38.462 0.00 0.00 0.00 3.93
2554 2711 5.660460 TCCATGCTACATACATTATAGGCG 58.340 41.667 0.00 0.00 0.00 5.52
2555 2712 4.811024 CCATGCTACATACATTATAGGCGG 59.189 45.833 0.00 0.00 0.00 6.13
2556 2713 5.419542 CATGCTACATACATTATAGGCGGT 58.580 41.667 0.00 0.00 0.00 5.68
2557 2714 5.477607 TGCTACATACATTATAGGCGGTT 57.522 39.130 0.00 0.00 0.00 4.44
2558 2715 5.475719 TGCTACATACATTATAGGCGGTTC 58.524 41.667 0.00 0.00 0.00 3.62
2559 2716 4.868734 GCTACATACATTATAGGCGGTTCC 59.131 45.833 0.00 0.00 0.00 3.62
2560 2717 4.967084 ACATACATTATAGGCGGTTCCA 57.033 40.909 0.00 0.00 37.29 3.53
2561 2718 5.298989 ACATACATTATAGGCGGTTCCAA 57.701 39.130 0.00 0.00 37.29 3.53
2562 2719 5.686753 ACATACATTATAGGCGGTTCCAAA 58.313 37.500 0.00 0.00 37.29 3.28
2563 2720 6.123651 ACATACATTATAGGCGGTTCCAAAA 58.876 36.000 0.00 0.00 37.29 2.44
2564 2721 4.976224 ACATTATAGGCGGTTCCAAAAC 57.024 40.909 0.00 0.00 37.29 2.43
2565 2722 4.337145 ACATTATAGGCGGTTCCAAAACA 58.663 39.130 0.00 0.00 37.10 2.83
2566 2723 4.398044 ACATTATAGGCGGTTCCAAAACAG 59.602 41.667 0.00 0.00 37.10 3.16
2567 2724 2.871096 ATAGGCGGTTCCAAAACAGA 57.129 45.000 0.00 0.00 37.10 3.41
2568 2725 2.642154 TAGGCGGTTCCAAAACAGAA 57.358 45.000 0.00 0.00 37.10 3.02
2569 2726 1.995376 AGGCGGTTCCAAAACAGAAT 58.005 45.000 0.00 0.00 37.10 2.40
2570 2727 1.613437 AGGCGGTTCCAAAACAGAATG 59.387 47.619 0.00 0.00 39.07 2.67
2571 2728 1.336795 GGCGGTTCCAAAACAGAATGG 60.337 52.381 0.00 0.00 37.10 3.16
2572 2729 1.339929 GCGGTTCCAAAACAGAATGGT 59.660 47.619 0.00 0.00 38.54 3.55
2573 2730 2.554893 GCGGTTCCAAAACAGAATGGTA 59.445 45.455 0.00 0.00 27.21 3.25
2574 2731 3.004944 GCGGTTCCAAAACAGAATGGTAA 59.995 43.478 0.00 0.00 27.21 2.85
2575 2732 4.500035 GCGGTTCCAAAACAGAATGGTAAA 60.500 41.667 0.00 0.00 27.21 2.01
2576 2733 5.219633 CGGTTCCAAAACAGAATGGTAAAG 58.780 41.667 0.00 0.00 27.21 1.85
2577 2734 5.221165 CGGTTCCAAAACAGAATGGTAAAGT 60.221 40.000 0.00 0.00 27.21 2.66
2578 2735 6.578944 GGTTCCAAAACAGAATGGTAAAGTT 58.421 36.000 0.00 0.00 27.21 2.66
2579 2736 7.045416 GGTTCCAAAACAGAATGGTAAAGTTT 58.955 34.615 0.00 0.00 27.21 2.66
2580 2737 8.198778 GGTTCCAAAACAGAATGGTAAAGTTTA 58.801 33.333 0.00 0.00 27.21 2.01
2581 2738 9.758651 GTTCCAAAACAGAATGGTAAAGTTTAT 57.241 29.630 0.00 0.00 27.21 1.40
2587 2744 7.949690 ACAGAATGGTAAAGTTTATAACCCC 57.050 36.000 0.00 0.00 43.62 4.95
2588 2745 7.471890 ACAGAATGGTAAAGTTTATAACCCCA 58.528 34.615 0.00 1.74 43.62 4.96
2589 2746 7.395206 ACAGAATGGTAAAGTTTATAACCCCAC 59.605 37.037 0.00 0.00 43.62 4.61
2590 2747 6.893554 AGAATGGTAAAGTTTATAACCCCACC 59.106 38.462 0.00 0.00 0.00 4.61
2591 2748 5.595814 TGGTAAAGTTTATAACCCCACCA 57.404 39.130 0.00 0.00 34.99 4.17
2592 2749 5.323581 TGGTAAAGTTTATAACCCCACCAC 58.676 41.667 0.00 0.00 33.46 4.16
2593 2750 4.706476 GGTAAAGTTTATAACCCCACCACC 59.294 45.833 0.00 0.00 0.00 4.61
2594 2751 4.472690 AAAGTTTATAACCCCACCACCA 57.527 40.909 0.00 0.00 0.00 4.17
2595 2752 4.472690 AAGTTTATAACCCCACCACCAA 57.527 40.909 0.00 0.00 0.00 3.67
2596 2753 3.770046 AGTTTATAACCCCACCACCAAC 58.230 45.455 0.00 0.00 0.00 3.77
2597 2754 3.140519 AGTTTATAACCCCACCACCAACA 59.859 43.478 0.00 0.00 0.00 3.33
2598 2755 3.896272 GTTTATAACCCCACCACCAACAA 59.104 43.478 0.00 0.00 0.00 2.83
2599 2756 2.302587 ATAACCCCACCACCAACAAG 57.697 50.000 0.00 0.00 0.00 3.16
2600 2757 0.468400 TAACCCCACCACCAACAAGC 60.468 55.000 0.00 0.00 0.00 4.01
2601 2758 2.123511 CCCCACCACCAACAAGCA 60.124 61.111 0.00 0.00 0.00 3.91
2602 2759 2.498056 CCCCACCACCAACAAGCAC 61.498 63.158 0.00 0.00 0.00 4.40
2603 2760 1.756172 CCCACCACCAACAAGCACA 60.756 57.895 0.00 0.00 0.00 4.57
2604 2761 1.437160 CCACCACCAACAAGCACAC 59.563 57.895 0.00 0.00 0.00 3.82
2605 2762 1.037030 CCACCACCAACAAGCACACT 61.037 55.000 0.00 0.00 0.00 3.55
2606 2763 0.381801 CACCACCAACAAGCACACTC 59.618 55.000 0.00 0.00 0.00 3.51
2607 2764 0.751643 ACCACCAACAAGCACACTCC 60.752 55.000 0.00 0.00 0.00 3.85
2608 2765 0.751277 CCACCAACAAGCACACTCCA 60.751 55.000 0.00 0.00 0.00 3.86
2609 2766 0.381801 CACCAACAAGCACACTCCAC 59.618 55.000 0.00 0.00 0.00 4.02
2610 2767 1.095228 ACCAACAAGCACACTCCACG 61.095 55.000 0.00 0.00 0.00 4.94
2611 2768 1.648720 CAACAAGCACACTCCACGG 59.351 57.895 0.00 0.00 0.00 4.94
2612 2769 2.186826 AACAAGCACACTCCACGGC 61.187 57.895 0.00 0.00 0.00 5.68
2613 2770 2.281070 CAAGCACACTCCACGGCT 60.281 61.111 0.00 0.00 38.45 5.52
2614 2771 2.281070 AAGCACACTCCACGGCTG 60.281 61.111 0.00 0.00 36.58 4.85
2615 2772 3.832237 AAGCACACTCCACGGCTGG 62.832 63.158 0.00 0.00 36.58 4.85
2616 2773 4.626081 GCACACTCCACGGCTGGT 62.626 66.667 0.00 0.00 38.90 4.00
2617 2774 2.357517 CACACTCCACGGCTGGTC 60.358 66.667 0.00 0.00 38.90 4.02
2618 2775 3.626924 ACACTCCACGGCTGGTCC 61.627 66.667 0.00 0.00 38.90 4.46
2627 2784 4.150994 GGCTGGTCCGAAACAACA 57.849 55.556 0.00 0.00 0.00 3.33
2628 2785 1.949257 GGCTGGTCCGAAACAACAG 59.051 57.895 0.00 0.00 0.00 3.16
2629 2786 1.515521 GGCTGGTCCGAAACAACAGG 61.516 60.000 0.00 0.00 0.00 4.00
2630 2787 0.818040 GCTGGTCCGAAACAACAGGT 60.818 55.000 0.00 0.00 0.00 4.00
2631 2788 1.541670 GCTGGTCCGAAACAACAGGTA 60.542 52.381 0.00 0.00 0.00 3.08
2632 2789 2.140717 CTGGTCCGAAACAACAGGTAC 58.859 52.381 0.00 0.00 0.00 3.34
2633 2790 1.202675 TGGTCCGAAACAACAGGTACC 60.203 52.381 2.73 2.73 0.00 3.34
2634 2791 1.202675 GGTCCGAAACAACAGGTACCA 60.203 52.381 15.94 0.00 0.00 3.25
2635 2792 2.551504 GGTCCGAAACAACAGGTACCAT 60.552 50.000 15.94 0.00 0.00 3.55
2636 2793 2.740447 GTCCGAAACAACAGGTACCATC 59.260 50.000 15.94 0.00 0.00 3.51
2637 2794 2.081462 CCGAAACAACAGGTACCATCC 58.919 52.381 15.94 0.00 0.00 3.51
2638 2795 2.551287 CCGAAACAACAGGTACCATCCA 60.551 50.000 15.94 0.00 0.00 3.41
2639 2796 3.142951 CGAAACAACAGGTACCATCCAA 58.857 45.455 15.94 0.00 0.00 3.53
2640 2797 3.058501 CGAAACAACAGGTACCATCCAAC 60.059 47.826 15.94 0.00 0.00 3.77
2641 2798 3.876309 AACAACAGGTACCATCCAACT 57.124 42.857 15.94 0.00 0.00 3.16
2642 2799 4.986054 AACAACAGGTACCATCCAACTA 57.014 40.909 15.94 0.00 0.00 2.24
2643 2800 4.986054 ACAACAGGTACCATCCAACTAA 57.014 40.909 15.94 0.00 0.00 2.24
2644 2801 4.648651 ACAACAGGTACCATCCAACTAAC 58.351 43.478 15.94 0.00 0.00 2.34
2645 2802 4.103469 ACAACAGGTACCATCCAACTAACA 59.897 41.667 15.94 0.00 0.00 2.41
2646 2803 4.986054 ACAGGTACCATCCAACTAACAA 57.014 40.909 15.94 0.00 0.00 2.83
2647 2804 4.648651 ACAGGTACCATCCAACTAACAAC 58.351 43.478 15.94 0.00 0.00 3.32
2648 2805 4.103469 ACAGGTACCATCCAACTAACAACA 59.897 41.667 15.94 0.00 0.00 3.33
2649 2806 4.695455 CAGGTACCATCCAACTAACAACAG 59.305 45.833 15.94 0.00 0.00 3.16
2650 2807 4.349930 AGGTACCATCCAACTAACAACAGT 59.650 41.667 15.94 0.00 0.00 3.55
2651 2808 4.694037 GGTACCATCCAACTAACAACAGTC 59.306 45.833 7.15 0.00 0.00 3.51
2652 2809 3.751518 ACCATCCAACTAACAACAGTCC 58.248 45.455 0.00 0.00 0.00 3.85
2653 2810 3.394606 ACCATCCAACTAACAACAGTCCT 59.605 43.478 0.00 0.00 0.00 3.85
2654 2811 3.753272 CCATCCAACTAACAACAGTCCTG 59.247 47.826 0.00 0.00 0.00 3.86
2655 2812 3.485463 TCCAACTAACAACAGTCCTGG 57.515 47.619 0.00 0.00 30.62 4.45
2656 2813 2.105821 TCCAACTAACAACAGTCCTGGG 59.894 50.000 0.00 0.00 30.44 4.45
2657 2814 2.504367 CAACTAACAACAGTCCTGGGG 58.496 52.381 0.00 0.00 34.19 4.96
2658 2815 1.064825 ACTAACAACAGTCCTGGGGG 58.935 55.000 0.00 0.00 34.19 5.40
2678 2835 6.398234 GGGGGTTTTGTTTGCAATTATTTT 57.602 33.333 0.00 0.00 34.18 1.82
2679 2836 6.212235 GGGGGTTTTGTTTGCAATTATTTTG 58.788 36.000 0.00 0.00 34.18 2.44
2680 2837 6.039829 GGGGGTTTTGTTTGCAATTATTTTGA 59.960 34.615 0.00 0.00 34.18 2.69
2681 2838 7.255766 GGGGGTTTTGTTTGCAATTATTTTGAT 60.256 33.333 0.00 0.00 34.18 2.57
2682 2839 8.140628 GGGGTTTTGTTTGCAATTATTTTGATT 58.859 29.630 0.00 0.00 34.18 2.57
2683 2840 9.526713 GGGTTTTGTTTGCAATTATTTTGATTT 57.473 25.926 0.00 0.00 34.18 2.17
2699 2856 7.727331 TTTTGATTTGATTTGAACATGGGAC 57.273 32.000 0.00 0.00 0.00 4.46
2700 2857 6.669125 TTGATTTGATTTGAACATGGGACT 57.331 33.333 0.00 0.00 0.00 3.85
2701 2858 6.028146 TGATTTGATTTGAACATGGGACTG 57.972 37.500 0.00 0.00 0.00 3.51
2702 2859 4.870123 TTTGATTTGAACATGGGACTGG 57.130 40.909 0.00 0.00 0.00 4.00
2703 2860 2.806434 TGATTTGAACATGGGACTGGG 58.194 47.619 0.00 0.00 0.00 4.45
2704 2861 1.478105 GATTTGAACATGGGACTGGGC 59.522 52.381 0.00 0.00 0.00 5.36
2705 2862 0.187117 TTTGAACATGGGACTGGGCA 59.813 50.000 0.00 0.00 0.00 5.36
2706 2863 0.409092 TTGAACATGGGACTGGGCAT 59.591 50.000 0.00 0.00 0.00 4.40
2707 2864 0.034186 TGAACATGGGACTGGGCATC 60.034 55.000 0.00 0.00 0.00 3.91
2708 2865 0.753111 GAACATGGGACTGGGCATCC 60.753 60.000 0.00 0.00 35.28 3.51
2718 2875 2.192175 GGGCATCCCGGTTACCAG 59.808 66.667 0.00 0.00 32.13 4.00
2719 2876 2.516225 GGCATCCCGGTTACCAGC 60.516 66.667 0.00 0.00 0.00 4.85
2720 2877 2.516225 GCATCCCGGTTACCAGCC 60.516 66.667 0.00 0.00 0.00 4.85
2721 2878 2.994699 CATCCCGGTTACCAGCCA 59.005 61.111 0.00 0.00 0.00 4.75
2722 2879 1.531748 CATCCCGGTTACCAGCCAT 59.468 57.895 0.00 0.00 0.00 4.40
2723 2880 0.106719 CATCCCGGTTACCAGCCATT 60.107 55.000 0.00 0.00 0.00 3.16
2724 2881 0.629058 ATCCCGGTTACCAGCCATTT 59.371 50.000 0.00 0.00 0.00 2.32
2725 2882 0.406361 TCCCGGTTACCAGCCATTTT 59.594 50.000 0.00 0.00 0.00 1.82
2726 2883 0.815095 CCCGGTTACCAGCCATTTTC 59.185 55.000 0.00 0.00 0.00 2.29
2727 2884 1.615919 CCCGGTTACCAGCCATTTTCT 60.616 52.381 0.00 0.00 0.00 2.52
2728 2885 1.743394 CCGGTTACCAGCCATTTTCTC 59.257 52.381 1.13 0.00 0.00 2.87
2729 2886 1.396996 CGGTTACCAGCCATTTTCTCG 59.603 52.381 1.13 0.00 0.00 4.04
2730 2887 2.433436 GGTTACCAGCCATTTTCTCGT 58.567 47.619 0.00 0.00 0.00 4.18
2731 2888 2.161609 GGTTACCAGCCATTTTCTCGTG 59.838 50.000 0.00 0.00 0.00 4.35
2732 2889 3.071479 GTTACCAGCCATTTTCTCGTGA 58.929 45.455 0.00 0.00 0.00 4.35
2733 2890 2.270352 ACCAGCCATTTTCTCGTGAA 57.730 45.000 0.00 0.00 0.00 3.18
2734 2891 2.795329 ACCAGCCATTTTCTCGTGAAT 58.205 42.857 0.02 0.00 31.56 2.57
2735 2892 2.489329 ACCAGCCATTTTCTCGTGAATG 59.511 45.455 0.02 0.00 33.97 2.67
2736 2893 2.749076 CCAGCCATTTTCTCGTGAATGA 59.251 45.455 0.02 0.00 35.74 2.57
2737 2894 3.379372 CCAGCCATTTTCTCGTGAATGAT 59.621 43.478 0.02 0.00 35.74 2.45
2738 2895 4.348656 CAGCCATTTTCTCGTGAATGATG 58.651 43.478 0.02 8.46 35.74 3.07
2739 2896 4.095334 CAGCCATTTTCTCGTGAATGATGA 59.905 41.667 18.16 0.00 35.74 2.92
2740 2897 4.334759 AGCCATTTTCTCGTGAATGATGAG 59.665 41.667 18.16 12.41 38.89 2.90
2741 2898 4.595116 CCATTTTCTCGTGAATGATGAGC 58.405 43.478 18.16 0.00 37.59 4.26
2742 2899 4.095334 CCATTTTCTCGTGAATGATGAGCA 59.905 41.667 18.16 0.00 37.59 4.26
2743 2900 4.934075 TTTTCTCGTGAATGATGAGCAG 57.066 40.909 0.02 0.00 37.59 4.24
2744 2901 3.874392 TTCTCGTGAATGATGAGCAGA 57.126 42.857 0.00 0.00 37.59 4.26
2745 2902 3.433513 TCTCGTGAATGATGAGCAGAG 57.566 47.619 0.00 0.00 37.59 3.35
2746 2903 2.757314 TCTCGTGAATGATGAGCAGAGT 59.243 45.455 0.00 0.00 37.59 3.24
2747 2904 3.114809 CTCGTGAATGATGAGCAGAGTC 58.885 50.000 0.00 0.00 30.78 3.36
2748 2905 2.159184 TCGTGAATGATGAGCAGAGTCC 60.159 50.000 0.00 0.00 0.00 3.85
2749 2906 2.417787 CGTGAATGATGAGCAGAGTCCA 60.418 50.000 0.00 0.00 0.00 4.02
2750 2907 2.935201 GTGAATGATGAGCAGAGTCCAC 59.065 50.000 0.00 0.00 0.00 4.02
2751 2908 2.836372 TGAATGATGAGCAGAGTCCACT 59.164 45.455 0.00 0.00 0.00 4.00
2752 2909 3.118847 TGAATGATGAGCAGAGTCCACTC 60.119 47.826 0.00 0.00 43.17 3.51
2753 2910 1.928868 TGATGAGCAGAGTCCACTCA 58.071 50.000 13.45 13.45 45.21 3.41
2756 2913 1.928868 TGAGCAGAGTCCACTCATCA 58.071 50.000 9.39 7.21 45.21 3.07
2757 2914 2.464782 TGAGCAGAGTCCACTCATCAT 58.535 47.619 9.39 0.00 45.21 2.45
2758 2915 2.167900 TGAGCAGAGTCCACTCATCATG 59.832 50.000 9.39 0.07 45.21 3.07
2759 2916 2.429971 GAGCAGAGTCCACTCATCATGA 59.570 50.000 9.39 0.00 45.21 3.07
2760 2917 7.190573 ATGAGCAGAGTCCACTCATCATGAG 62.191 48.000 13.53 13.53 45.68 2.90
2775 2932 6.705302 TCATCATGAGAATAACCCATCTAGC 58.295 40.000 0.09 0.00 0.00 3.42
2776 2933 6.270695 TCATCATGAGAATAACCCATCTAGCA 59.729 38.462 0.09 0.00 0.00 3.49
2777 2934 6.692849 TCATGAGAATAACCCATCTAGCAT 57.307 37.500 0.00 0.00 0.00 3.79
2778 2935 6.470278 TCATGAGAATAACCCATCTAGCATG 58.530 40.000 0.00 0.00 0.00 4.06
2779 2936 5.233083 TGAGAATAACCCATCTAGCATGG 57.767 43.478 12.00 12.00 38.88 3.66
2780 2937 4.907269 TGAGAATAACCCATCTAGCATGGA 59.093 41.667 17.78 4.14 41.64 3.41
2781 2938 5.369404 TGAGAATAACCCATCTAGCATGGAA 59.631 40.000 17.78 7.55 41.64 3.53
2782 2939 5.874093 AGAATAACCCATCTAGCATGGAAG 58.126 41.667 17.78 8.44 41.64 3.46
2783 2940 5.608437 AGAATAACCCATCTAGCATGGAAGA 59.392 40.000 17.78 6.91 41.64 2.87
2784 2941 6.274200 AGAATAACCCATCTAGCATGGAAGAT 59.726 38.462 17.78 8.33 41.64 2.40
2785 2942 7.459125 AGAATAACCCATCTAGCATGGAAGATA 59.541 37.037 17.78 8.82 41.64 1.98
2786 2943 7.761981 ATAACCCATCTAGCATGGAAGATAT 57.238 36.000 17.78 10.08 41.64 1.63
2787 2944 6.460103 AACCCATCTAGCATGGAAGATATT 57.540 37.500 17.78 4.90 41.64 1.28
2788 2945 5.813383 ACCCATCTAGCATGGAAGATATTG 58.187 41.667 17.78 5.89 41.64 1.90
2789 2946 4.639310 CCCATCTAGCATGGAAGATATTGC 59.361 45.833 17.78 0.00 41.64 3.56
2790 2947 4.639310 CCATCTAGCATGGAAGATATTGCC 59.361 45.833 13.14 0.00 41.64 4.52
2791 2948 4.980339 TCTAGCATGGAAGATATTGCCA 57.020 40.909 0.00 0.00 35.71 4.92
2792 2949 4.903054 TCTAGCATGGAAGATATTGCCAG 58.097 43.478 0.00 0.00 35.71 4.85
2793 2950 2.236766 AGCATGGAAGATATTGCCAGC 58.763 47.619 0.00 0.00 35.71 4.85
2794 2951 1.271656 GCATGGAAGATATTGCCAGCC 59.728 52.381 0.00 0.00 34.74 4.85
2795 2952 1.891150 CATGGAAGATATTGCCAGCCC 59.109 52.381 0.00 0.00 34.74 5.19
2796 2953 1.225373 TGGAAGATATTGCCAGCCCT 58.775 50.000 0.00 0.00 0.00 5.19
2797 2954 2.417652 TGGAAGATATTGCCAGCCCTA 58.582 47.619 0.00 0.00 0.00 3.53
2798 2955 2.373169 TGGAAGATATTGCCAGCCCTAG 59.627 50.000 0.00 0.00 0.00 3.02
2799 2956 2.373502 GGAAGATATTGCCAGCCCTAGT 59.626 50.000 0.00 0.00 0.00 2.57
2800 2957 3.181439 GGAAGATATTGCCAGCCCTAGTT 60.181 47.826 0.00 0.00 0.00 2.24
2801 2958 3.498774 AGATATTGCCAGCCCTAGTTG 57.501 47.619 0.00 0.00 0.00 3.16
2802 2959 2.107204 AGATATTGCCAGCCCTAGTTGG 59.893 50.000 1.79 1.79 46.67 3.77
2803 2960 1.295020 TATTGCCAGCCCTAGTTGGT 58.705 50.000 6.93 0.00 45.72 3.67
2804 2961 1.295020 ATTGCCAGCCCTAGTTGGTA 58.705 50.000 6.93 0.81 45.72 3.25
2805 2962 0.326927 TTGCCAGCCCTAGTTGGTAC 59.673 55.000 6.93 0.00 45.72 3.34
2806 2963 0.838554 TGCCAGCCCTAGTTGGTACA 60.839 55.000 0.00 0.00 45.72 2.90
2807 2964 0.546598 GCCAGCCCTAGTTGGTACAT 59.453 55.000 0.00 0.00 45.72 2.29
2808 2965 1.747206 GCCAGCCCTAGTTGGTACATG 60.747 57.143 0.00 0.00 45.72 3.21
2809 2966 1.837439 CCAGCCCTAGTTGGTACATGA 59.163 52.381 0.00 0.00 39.43 3.07
2810 2967 2.158900 CCAGCCCTAGTTGGTACATGAG 60.159 54.545 0.00 0.00 39.43 2.90
2811 2968 1.486726 AGCCCTAGTTGGTACATGAGC 59.513 52.381 0.00 0.00 39.30 4.26
2812 2969 1.209504 GCCCTAGTTGGTACATGAGCA 59.790 52.381 0.00 0.00 39.30 4.26
2813 2970 2.355716 GCCCTAGTTGGTACATGAGCAA 60.356 50.000 0.00 2.62 43.21 3.91
2814 2971 3.685550 GCCCTAGTTGGTACATGAGCAAT 60.686 47.826 0.00 0.00 46.72 3.56
2815 2972 4.526970 CCCTAGTTGGTACATGAGCAATT 58.473 43.478 0.00 5.17 46.72 2.32
2816 2973 4.576463 CCCTAGTTGGTACATGAGCAATTC 59.424 45.833 0.00 0.00 46.72 2.17
2817 2974 4.271049 CCTAGTTGGTACATGAGCAATTCG 59.729 45.833 0.00 0.00 46.72 3.34
2818 2975 3.937814 AGTTGGTACATGAGCAATTCGA 58.062 40.909 0.00 0.00 46.72 3.71
2819 2976 3.935203 AGTTGGTACATGAGCAATTCGAG 59.065 43.478 0.00 0.00 46.72 4.04
2820 2977 2.279741 TGGTACATGAGCAATTCGAGC 58.720 47.619 0.00 0.00 30.90 5.03
2821 2978 2.279741 GGTACATGAGCAATTCGAGCA 58.720 47.619 0.00 0.00 0.00 4.26
2822 2979 2.874701 GGTACATGAGCAATTCGAGCAT 59.125 45.455 0.00 0.00 0.00 3.79
2823 2980 4.058124 GGTACATGAGCAATTCGAGCATA 58.942 43.478 0.00 0.00 0.00 3.14
2824 2981 4.084328 GGTACATGAGCAATTCGAGCATAC 60.084 45.833 0.00 0.00 0.00 2.39
2825 2982 3.534554 ACATGAGCAATTCGAGCATACA 58.465 40.909 0.00 0.00 0.00 2.29
2826 2983 3.940852 ACATGAGCAATTCGAGCATACAA 59.059 39.130 0.00 0.00 0.00 2.41
2827 2984 4.395854 ACATGAGCAATTCGAGCATACAAA 59.604 37.500 0.00 0.00 0.00 2.83
2828 2985 5.106197 ACATGAGCAATTCGAGCATACAAAA 60.106 36.000 0.00 0.00 0.00 2.44
2829 2986 4.722194 TGAGCAATTCGAGCATACAAAAC 58.278 39.130 0.00 0.00 0.00 2.43
2830 2987 4.215185 TGAGCAATTCGAGCATACAAAACA 59.785 37.500 0.00 0.00 0.00 2.83
2831 2988 5.106197 TGAGCAATTCGAGCATACAAAACAT 60.106 36.000 0.00 0.00 0.00 2.71
2832 2989 6.093357 TGAGCAATTCGAGCATACAAAACATA 59.907 34.615 0.00 0.00 0.00 2.29
2833 2990 7.031226 AGCAATTCGAGCATACAAAACATAT 57.969 32.000 0.00 0.00 0.00 1.78
2834 2991 7.483307 AGCAATTCGAGCATACAAAACATATT 58.517 30.769 0.00 0.00 0.00 1.28
2835 2992 8.620416 AGCAATTCGAGCATACAAAACATATTA 58.380 29.630 0.00 0.00 0.00 0.98
2836 2993 9.398170 GCAATTCGAGCATACAAAACATATTAT 57.602 29.630 0.00 0.00 0.00 1.28
2859 3016 4.790765 ATTTGAAGGCTTAGAGTTTGGC 57.209 40.909 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.963747 CGCAAGAACATTCCGGAAAC 58.036 50.000 23.08 12.81 43.02 2.78
609 659 8.079809 ACTACAATAACAATAACAAGGCAACAC 58.920 33.333 0.00 0.00 41.41 3.32
612 662 8.172352 ACACTACAATAACAATAACAAGGCAA 57.828 30.769 0.00 0.00 0.00 4.52
682 732 7.745620 ATAATAGAAACAATAAGAAGGCGGG 57.254 36.000 0.00 0.00 0.00 6.13
734 813 8.830915 AGGAACTTAGTCTCTGATAGAAATGA 57.169 34.615 0.00 0.00 31.04 2.57
897 977 4.681074 TTCATTTTCCAAGTTTCCCACC 57.319 40.909 0.00 0.00 0.00 4.61
931 1011 4.712337 GTCCTCTTCCTCATGTTCCTCTTA 59.288 45.833 0.00 0.00 0.00 2.10
971 1051 2.616634 ATCGACAGACCGTCTAGCTA 57.383 50.000 0.00 0.00 42.98 3.32
1109 1189 3.193267 ACCCACATATTGTGTCACATTGC 59.807 43.478 6.48 0.00 46.45 3.56
1229 1310 0.178301 GCTCCCGGTAAAGCTAAGCT 59.822 55.000 12.15 0.00 42.56 3.74
1251 1332 2.877097 TGGCTGCAACCTCAAAGATA 57.123 45.000 7.82 0.00 0.00 1.98
1255 1336 3.617045 GCAAATATGGCTGCAACCTCAAA 60.617 43.478 7.82 0.00 38.48 2.69
1262 1343 3.448301 AGCTTTAGCAAATATGGCTGCAA 59.552 39.130 11.36 0.00 45.16 4.08
1267 1348 3.885297 TCTGGAGCTTTAGCAAATATGGC 59.115 43.478 4.33 0.00 45.16 4.40
1299 1380 1.146637 CTAGAAGCGCAGGCATCATC 58.853 55.000 11.47 0.00 43.41 2.92
1445 1540 8.217799 AGCTAGTCAAGTAGAGATTACAGATCT 58.782 37.037 0.00 0.00 0.00 2.75
1942 2090 3.782992 AGTCCAAAGGCCAATTTCAGAT 58.217 40.909 5.01 0.00 0.00 2.90
1993 2141 9.213819 CAACAACAATTCGAGATATACAACATG 57.786 33.333 0.00 0.00 0.00 3.21
1998 2146 8.771920 ACTTCAACAACAATTCGAGATATACA 57.228 30.769 0.00 0.00 0.00 2.29
2001 2149 7.819415 TCAGACTTCAACAACAATTCGAGATAT 59.181 33.333 0.00 0.00 0.00 1.63
2131 2285 7.330262 TCACTAGCACATATTCAAACTCATCA 58.670 34.615 0.00 0.00 0.00 3.07
2209 2364 3.070734 AGACAACTCTCACATGCAGAACT 59.929 43.478 0.00 0.00 0.00 3.01
2388 2545 3.544698 TGGCCTATCTACTTAGGAGGG 57.455 52.381 3.32 0.00 41.18 4.30
2399 2556 1.144503 CCCTCTGCAAATGGCCTATCT 59.855 52.381 3.32 0.00 43.89 1.98
2401 2558 1.225373 TCCCTCTGCAAATGGCCTAT 58.775 50.000 3.32 0.00 43.89 2.57
2402 2559 0.998928 TTCCCTCTGCAAATGGCCTA 59.001 50.000 3.32 0.00 43.89 3.93
2403 2560 0.324091 CTTCCCTCTGCAAATGGCCT 60.324 55.000 3.32 0.00 43.89 5.19
2405 2562 1.252904 TGCTTCCCTCTGCAAATGGC 61.253 55.000 0.00 0.00 45.13 4.40
2406 2563 0.815734 CTGCTTCCCTCTGCAAATGG 59.184 55.000 0.00 0.00 38.81 3.16
2407 2564 0.815734 CCTGCTTCCCTCTGCAAATG 59.184 55.000 0.00 0.00 38.81 2.32
2408 2565 0.324091 CCCTGCTTCCCTCTGCAAAT 60.324 55.000 0.00 0.00 38.81 2.32
2409 2566 1.075482 CCCTGCTTCCCTCTGCAAA 59.925 57.895 0.00 0.00 38.81 3.68
2410 2567 1.210204 ATCCCTGCTTCCCTCTGCAA 61.210 55.000 0.00 0.00 38.81 4.08
2411 2568 1.210204 AATCCCTGCTTCCCTCTGCA 61.210 55.000 0.00 0.00 37.63 4.41
2412 2569 0.033699 AAATCCCTGCTTCCCTCTGC 60.034 55.000 0.00 0.00 0.00 4.26
2413 2570 1.760192 CAAATCCCTGCTTCCCTCTG 58.240 55.000 0.00 0.00 0.00 3.35
2414 2571 0.033699 GCAAATCCCTGCTTCCCTCT 60.034 55.000 0.00 0.00 39.34 3.69
2415 2572 0.323725 TGCAAATCCCTGCTTCCCTC 60.324 55.000 0.00 0.00 43.07 4.30
2416 2573 0.114954 TTGCAAATCCCTGCTTCCCT 59.885 50.000 0.00 0.00 43.07 4.20
2417 2574 0.975887 TTTGCAAATCCCTGCTTCCC 59.024 50.000 8.05 0.00 43.07 3.97
2418 2575 1.066645 CCTTTGCAAATCCCTGCTTCC 60.067 52.381 13.23 0.00 43.07 3.46
2419 2576 1.620323 ACCTTTGCAAATCCCTGCTTC 59.380 47.619 13.23 0.00 43.07 3.86
2420 2577 1.345415 CACCTTTGCAAATCCCTGCTT 59.655 47.619 13.23 0.00 43.07 3.91
2421 2578 0.971386 CACCTTTGCAAATCCCTGCT 59.029 50.000 13.23 0.00 43.07 4.24
2422 2579 3.520187 CACCTTTGCAAATCCCTGC 57.480 52.632 13.23 0.00 42.95 4.85
2433 2590 1.004560 TCGAGCTCTGGCACCTTTG 60.005 57.895 12.85 0.00 41.70 2.77
2434 2591 1.294780 CTCGAGCTCTGGCACCTTT 59.705 57.895 12.85 0.00 41.70 3.11
2435 2592 1.476007 AACTCGAGCTCTGGCACCTT 61.476 55.000 13.61 0.00 41.70 3.50
2436 2593 1.476007 AAACTCGAGCTCTGGCACCT 61.476 55.000 13.61 0.00 41.70 4.00
2437 2594 0.603975 AAAACTCGAGCTCTGGCACC 60.604 55.000 13.61 0.00 41.70 5.01
2438 2595 1.230324 AAAAACTCGAGCTCTGGCAC 58.770 50.000 13.61 0.00 41.70 5.01
2439 2596 2.831685 TAAAAACTCGAGCTCTGGCA 57.168 45.000 13.61 0.00 41.70 4.92
2440 2597 4.219802 GTTTTAAAAACTCGAGCTCTGGC 58.780 43.478 13.61 0.00 39.06 4.85
2441 2598 5.236478 TCTGTTTTAAAAACTCGAGCTCTGG 59.764 40.000 13.61 6.70 0.00 3.86
2442 2599 6.201044 TCTCTGTTTTAAAAACTCGAGCTCTG 59.799 38.462 13.61 7.09 0.00 3.35
2443 2600 6.281405 TCTCTGTTTTAAAAACTCGAGCTCT 58.719 36.000 13.61 0.00 0.00 4.09
2444 2601 6.526566 TCTCTGTTTTAAAAACTCGAGCTC 57.473 37.500 13.61 2.73 0.00 4.09
2445 2602 8.603242 TTATCTCTGTTTTAAAAACTCGAGCT 57.397 30.769 13.61 0.00 0.00 4.09
2446 2603 9.827411 ATTTATCTCTGTTTTAAAAACTCGAGC 57.173 29.630 13.61 0.00 0.00 5.03
2474 2631 9.193806 ACAATGAAAGCATACCTCTCAAAATAT 57.806 29.630 0.00 0.00 33.44 1.28
2475 2632 8.579850 ACAATGAAAGCATACCTCTCAAAATA 57.420 30.769 0.00 0.00 33.44 1.40
2476 2633 7.177216 TGACAATGAAAGCATACCTCTCAAAAT 59.823 33.333 0.00 0.00 33.44 1.82
2477 2634 6.489700 TGACAATGAAAGCATACCTCTCAAAA 59.510 34.615 0.00 0.00 33.44 2.44
2478 2635 6.003326 TGACAATGAAAGCATACCTCTCAAA 58.997 36.000 0.00 0.00 33.44 2.69
2479 2636 5.559770 TGACAATGAAAGCATACCTCTCAA 58.440 37.500 0.00 0.00 33.44 3.02
2480 2637 5.164620 TGACAATGAAAGCATACCTCTCA 57.835 39.130 0.00 0.00 33.44 3.27
2481 2638 5.412594 TGTTGACAATGAAAGCATACCTCTC 59.587 40.000 0.00 0.00 33.44 3.20
2482 2639 5.316167 TGTTGACAATGAAAGCATACCTCT 58.684 37.500 0.00 0.00 33.44 3.69
2483 2640 5.627499 TGTTGACAATGAAAGCATACCTC 57.373 39.130 0.00 0.00 33.44 3.85
2484 2641 7.176515 TGTTATGTTGACAATGAAAGCATACCT 59.823 33.333 0.00 0.00 33.44 3.08
2485 2642 7.312154 TGTTATGTTGACAATGAAAGCATACC 58.688 34.615 0.00 0.00 33.44 2.73
2486 2643 8.638565 GTTGTTATGTTGACAATGAAAGCATAC 58.361 33.333 0.00 0.00 39.03 2.39
2487 2644 7.812191 GGTTGTTATGTTGACAATGAAAGCATA 59.188 33.333 0.00 0.00 39.03 3.14
2488 2645 6.646240 GGTTGTTATGTTGACAATGAAAGCAT 59.354 34.615 0.00 0.00 39.03 3.79
2489 2646 5.982516 GGTTGTTATGTTGACAATGAAAGCA 59.017 36.000 0.00 0.00 39.03 3.91
2490 2647 5.982516 TGGTTGTTATGTTGACAATGAAAGC 59.017 36.000 0.00 0.00 39.03 3.51
2491 2648 8.592105 ATTGGTTGTTATGTTGACAATGAAAG 57.408 30.769 0.00 0.00 39.03 2.62
2507 2664 9.886132 GGAAGATACCGATATATATTGGTTGTT 57.114 33.333 31.21 23.24 46.04 2.83
2508 2665 9.042450 TGGAAGATACCGATATATATTGGTTGT 57.958 33.333 31.21 22.53 46.04 3.32
2512 2669 8.370940 AGCATGGAAGATACCGATATATATTGG 58.629 37.037 22.87 22.87 42.03 3.16
2515 2672 9.588096 TGTAGCATGGAAGATACCGATATATAT 57.412 33.333 0.00 0.00 29.63 0.86
2516 2673 8.990163 TGTAGCATGGAAGATACCGATATATA 57.010 34.615 0.00 0.00 29.63 0.86
2517 2674 7.898014 TGTAGCATGGAAGATACCGATATAT 57.102 36.000 0.00 0.00 29.63 0.86
2518 2675 7.898014 ATGTAGCATGGAAGATACCGATATA 57.102 36.000 0.00 0.00 29.63 0.86
2519 2676 6.798427 ATGTAGCATGGAAGATACCGATAT 57.202 37.500 0.00 0.00 29.63 1.63
2520 2677 6.661805 TGTATGTAGCATGGAAGATACCGATA 59.338 38.462 0.00 0.00 29.63 2.92
2521 2678 5.480422 TGTATGTAGCATGGAAGATACCGAT 59.520 40.000 0.00 0.00 29.63 4.18
2522 2679 4.830600 TGTATGTAGCATGGAAGATACCGA 59.169 41.667 0.00 0.00 29.63 4.69
2523 2680 5.134202 TGTATGTAGCATGGAAGATACCG 57.866 43.478 0.00 0.00 29.63 4.02
2527 2684 7.989741 GCCTATAATGTATGTAGCATGGAAGAT 59.010 37.037 0.00 0.00 0.00 2.40
2528 2685 7.331026 GCCTATAATGTATGTAGCATGGAAGA 58.669 38.462 0.00 0.00 0.00 2.87
2529 2686 6.256539 CGCCTATAATGTATGTAGCATGGAAG 59.743 42.308 0.00 0.00 0.00 3.46
2530 2687 6.106003 CGCCTATAATGTATGTAGCATGGAA 58.894 40.000 0.00 0.00 0.00 3.53
2531 2688 5.395214 CCGCCTATAATGTATGTAGCATGGA 60.395 44.000 0.00 0.00 0.00 3.41
2532 2689 4.811024 CCGCCTATAATGTATGTAGCATGG 59.189 45.833 0.00 0.00 0.00 3.66
2533 2690 5.419542 ACCGCCTATAATGTATGTAGCATG 58.580 41.667 0.00 0.00 0.00 4.06
2534 2691 5.677319 ACCGCCTATAATGTATGTAGCAT 57.323 39.130 0.00 0.00 0.00 3.79
2535 2692 5.475719 GAACCGCCTATAATGTATGTAGCA 58.524 41.667 0.00 0.00 0.00 3.49
2536 2693 4.868734 GGAACCGCCTATAATGTATGTAGC 59.131 45.833 0.00 0.00 0.00 3.58
2537 2694 6.032956 TGGAACCGCCTATAATGTATGTAG 57.967 41.667 0.00 0.00 37.63 2.74
2538 2695 6.422344 TTGGAACCGCCTATAATGTATGTA 57.578 37.500 0.00 0.00 37.63 2.29
2539 2696 4.967084 TGGAACCGCCTATAATGTATGT 57.033 40.909 0.00 0.00 37.63 2.29
2540 2697 6.038825 TGTTTTGGAACCGCCTATAATGTATG 59.961 38.462 0.00 0.00 37.63 2.39
2541 2698 6.123651 TGTTTTGGAACCGCCTATAATGTAT 58.876 36.000 0.00 0.00 37.63 2.29
2542 2699 5.498393 TGTTTTGGAACCGCCTATAATGTA 58.502 37.500 0.00 0.00 37.63 2.29
2543 2700 4.337145 TGTTTTGGAACCGCCTATAATGT 58.663 39.130 0.00 0.00 37.63 2.71
2544 2701 4.638421 TCTGTTTTGGAACCGCCTATAATG 59.362 41.667 0.00 0.00 37.63 1.90
2545 2702 4.850680 TCTGTTTTGGAACCGCCTATAAT 58.149 39.130 0.00 0.00 37.63 1.28
2546 2703 4.289238 TCTGTTTTGGAACCGCCTATAA 57.711 40.909 0.00 0.00 37.63 0.98
2547 2704 3.985019 TCTGTTTTGGAACCGCCTATA 57.015 42.857 0.00 0.00 37.63 1.31
2548 2705 2.871096 TCTGTTTTGGAACCGCCTAT 57.129 45.000 0.00 0.00 37.63 2.57
2549 2706 2.642154 TTCTGTTTTGGAACCGCCTA 57.358 45.000 0.00 0.00 37.63 3.93
2550 2707 1.613437 CATTCTGTTTTGGAACCGCCT 59.387 47.619 0.00 0.00 37.63 5.52
2551 2708 1.336795 CCATTCTGTTTTGGAACCGCC 60.337 52.381 0.00 0.00 34.81 6.13
2552 2709 1.339929 ACCATTCTGTTTTGGAACCGC 59.660 47.619 0.00 0.00 36.79 5.68
2553 2710 4.839668 TTACCATTCTGTTTTGGAACCG 57.160 40.909 0.00 0.00 36.79 4.44
2554 2711 6.156748 ACTTTACCATTCTGTTTTGGAACC 57.843 37.500 0.00 0.00 36.79 3.62
2555 2712 9.758651 ATAAACTTTACCATTCTGTTTTGGAAC 57.241 29.630 0.00 0.00 36.79 3.62
2561 2718 8.809066 GGGGTTATAAACTTTACCATTCTGTTT 58.191 33.333 0.00 0.00 35.43 2.83
2562 2719 7.951245 TGGGGTTATAAACTTTACCATTCTGTT 59.049 33.333 0.00 0.00 32.20 3.16
2563 2720 7.395206 GTGGGGTTATAAACTTTACCATTCTGT 59.605 37.037 0.00 0.00 32.20 3.41
2564 2721 7.147966 GGTGGGGTTATAAACTTTACCATTCTG 60.148 40.741 13.10 0.00 32.20 3.02
2565 2722 6.893554 GGTGGGGTTATAAACTTTACCATTCT 59.106 38.462 13.10 0.00 32.20 2.40
2566 2723 6.664384 TGGTGGGGTTATAAACTTTACCATTC 59.336 38.462 15.37 6.49 34.75 2.67
2567 2724 6.438108 GTGGTGGGGTTATAAACTTTACCATT 59.562 38.462 19.54 0.00 38.52 3.16
2568 2725 5.953548 GTGGTGGGGTTATAAACTTTACCAT 59.046 40.000 19.54 0.00 38.52 3.55
2569 2726 5.323581 GTGGTGGGGTTATAAACTTTACCA 58.676 41.667 15.37 15.37 36.11 3.25
2570 2727 4.706476 GGTGGTGGGGTTATAAACTTTACC 59.294 45.833 0.00 7.32 0.00 2.85
2571 2728 5.323581 TGGTGGTGGGGTTATAAACTTTAC 58.676 41.667 0.00 0.00 0.00 2.01
2572 2729 5.595814 TGGTGGTGGGGTTATAAACTTTA 57.404 39.130 0.00 0.00 0.00 1.85
2573 2730 4.472690 TGGTGGTGGGGTTATAAACTTT 57.527 40.909 0.00 0.00 0.00 2.66
2574 2731 4.154176 GTTGGTGGTGGGGTTATAAACTT 58.846 43.478 0.00 0.00 0.00 2.66
2575 2732 3.140519 TGTTGGTGGTGGGGTTATAAACT 59.859 43.478 0.00 0.00 0.00 2.66
2576 2733 3.498334 TGTTGGTGGTGGGGTTATAAAC 58.502 45.455 0.00 0.00 0.00 2.01
2577 2734 3.897657 TGTTGGTGGTGGGGTTATAAA 57.102 42.857 0.00 0.00 0.00 1.40
2578 2735 3.768878 CTTGTTGGTGGTGGGGTTATAA 58.231 45.455 0.00 0.00 0.00 0.98
2579 2736 2.555670 GCTTGTTGGTGGTGGGGTTATA 60.556 50.000 0.00 0.00 0.00 0.98
2580 2737 1.825641 GCTTGTTGGTGGTGGGGTTAT 60.826 52.381 0.00 0.00 0.00 1.89
2581 2738 0.468400 GCTTGTTGGTGGTGGGGTTA 60.468 55.000 0.00 0.00 0.00 2.85
2582 2739 1.760480 GCTTGTTGGTGGTGGGGTT 60.760 57.895 0.00 0.00 0.00 4.11
2583 2740 2.123468 GCTTGTTGGTGGTGGGGT 60.123 61.111 0.00 0.00 0.00 4.95
2584 2741 2.123511 TGCTTGTTGGTGGTGGGG 60.124 61.111 0.00 0.00 0.00 4.96
2585 2742 1.756172 TGTGCTTGTTGGTGGTGGG 60.756 57.895 0.00 0.00 0.00 4.61
2586 2743 1.037030 AGTGTGCTTGTTGGTGGTGG 61.037 55.000 0.00 0.00 0.00 4.61
2587 2744 0.381801 GAGTGTGCTTGTTGGTGGTG 59.618 55.000 0.00 0.00 0.00 4.17
2588 2745 0.751643 GGAGTGTGCTTGTTGGTGGT 60.752 55.000 0.00 0.00 0.00 4.16
2589 2746 0.751277 TGGAGTGTGCTTGTTGGTGG 60.751 55.000 0.00 0.00 0.00 4.61
2590 2747 0.381801 GTGGAGTGTGCTTGTTGGTG 59.618 55.000 0.00 0.00 0.00 4.17
2591 2748 1.095228 CGTGGAGTGTGCTTGTTGGT 61.095 55.000 0.00 0.00 0.00 3.67
2592 2749 1.648720 CGTGGAGTGTGCTTGTTGG 59.351 57.895 0.00 0.00 0.00 3.77
2593 2750 1.648720 CCGTGGAGTGTGCTTGTTG 59.351 57.895 0.00 0.00 0.00 3.33
2594 2751 2.186826 GCCGTGGAGTGTGCTTGTT 61.187 57.895 0.00 0.00 0.00 2.83
2595 2752 2.591715 GCCGTGGAGTGTGCTTGT 60.592 61.111 0.00 0.00 0.00 3.16
2596 2753 2.281070 AGCCGTGGAGTGTGCTTG 60.281 61.111 0.00 0.00 0.00 4.01
2597 2754 2.281070 CAGCCGTGGAGTGTGCTT 60.281 61.111 0.00 0.00 30.08 3.91
2610 2767 1.515521 CCTGTTGTTTCGGACCAGCC 61.516 60.000 0.00 0.00 0.00 4.85
2611 2768 0.818040 ACCTGTTGTTTCGGACCAGC 60.818 55.000 0.00 0.00 0.00 4.85
2612 2769 2.140717 GTACCTGTTGTTTCGGACCAG 58.859 52.381 0.00 0.00 0.00 4.00
2613 2770 1.202675 GGTACCTGTTGTTTCGGACCA 60.203 52.381 4.06 0.00 0.00 4.02
2614 2771 1.202675 TGGTACCTGTTGTTTCGGACC 60.203 52.381 14.36 0.00 0.00 4.46
2615 2772 2.243602 TGGTACCTGTTGTTTCGGAC 57.756 50.000 14.36 0.00 0.00 4.79
2616 2773 2.289819 GGATGGTACCTGTTGTTTCGGA 60.290 50.000 14.36 0.00 0.00 4.55
2617 2774 2.081462 GGATGGTACCTGTTGTTTCGG 58.919 52.381 14.36 0.00 0.00 4.30
2618 2775 2.773487 TGGATGGTACCTGTTGTTTCG 58.227 47.619 14.36 0.00 0.00 3.46
2619 2776 4.142038 AGTTGGATGGTACCTGTTGTTTC 58.858 43.478 14.36 0.00 0.00 2.78
2620 2777 4.178956 AGTTGGATGGTACCTGTTGTTT 57.821 40.909 14.36 0.00 0.00 2.83
2621 2778 3.876309 AGTTGGATGGTACCTGTTGTT 57.124 42.857 14.36 0.00 0.00 2.83
2622 2779 4.103469 TGTTAGTTGGATGGTACCTGTTGT 59.897 41.667 14.36 0.00 0.00 3.32
2623 2780 4.647611 TGTTAGTTGGATGGTACCTGTTG 58.352 43.478 14.36 0.00 0.00 3.33
2624 2781 4.986054 TGTTAGTTGGATGGTACCTGTT 57.014 40.909 14.36 0.00 0.00 3.16
2625 2782 4.103469 TGTTGTTAGTTGGATGGTACCTGT 59.897 41.667 14.36 1.24 0.00 4.00
2626 2783 4.647611 TGTTGTTAGTTGGATGGTACCTG 58.352 43.478 14.36 0.00 0.00 4.00
2627 2784 4.349930 ACTGTTGTTAGTTGGATGGTACCT 59.650 41.667 14.36 0.00 0.00 3.08
2628 2785 4.648651 ACTGTTGTTAGTTGGATGGTACC 58.351 43.478 4.43 4.43 0.00 3.34
2629 2786 4.694037 GGACTGTTGTTAGTTGGATGGTAC 59.306 45.833 0.00 0.00 0.00 3.34
2630 2787 4.595781 AGGACTGTTGTTAGTTGGATGGTA 59.404 41.667 0.00 0.00 0.00 3.25
2631 2788 3.394606 AGGACTGTTGTTAGTTGGATGGT 59.605 43.478 0.00 0.00 0.00 3.55
2632 2789 3.753272 CAGGACTGTTGTTAGTTGGATGG 59.247 47.826 0.00 0.00 0.00 3.51
2633 2790 3.753272 CCAGGACTGTTGTTAGTTGGATG 59.247 47.826 0.00 0.00 32.64 3.51
2634 2791 3.244911 CCCAGGACTGTTGTTAGTTGGAT 60.245 47.826 0.00 0.00 32.64 3.41
2635 2792 2.105821 CCCAGGACTGTTGTTAGTTGGA 59.894 50.000 0.00 0.00 32.64 3.53
2636 2793 2.504367 CCCAGGACTGTTGTTAGTTGG 58.496 52.381 0.00 0.00 31.34 3.77
2637 2794 2.504367 CCCCAGGACTGTTGTTAGTTG 58.496 52.381 0.00 0.00 0.00 3.16
2638 2795 1.423921 CCCCCAGGACTGTTGTTAGTT 59.576 52.381 0.00 0.00 33.47 2.24
2639 2796 1.064825 CCCCCAGGACTGTTGTTAGT 58.935 55.000 0.00 0.00 33.47 2.24
2640 2797 3.957288 CCCCCAGGACTGTTGTTAG 57.043 57.895 0.00 0.00 33.47 2.34
2655 2812 6.039829 TCAAAATAATTGCAAACAAAACCCCC 59.960 34.615 1.71 0.00 39.77 5.40
2656 2813 7.032377 TCAAAATAATTGCAAACAAAACCCC 57.968 32.000 1.71 0.00 39.77 4.95
2657 2814 9.526713 AAATCAAAATAATTGCAAACAAAACCC 57.473 25.926 1.71 0.00 39.77 4.11
2673 2830 9.434420 GTCCCATGTTCAAATCAAATCAAAATA 57.566 29.630 0.00 0.00 0.00 1.40
2674 2831 8.158789 AGTCCCATGTTCAAATCAAATCAAAAT 58.841 29.630 0.00 0.00 0.00 1.82
2675 2832 7.441760 CAGTCCCATGTTCAAATCAAATCAAAA 59.558 33.333 0.00 0.00 0.00 2.44
2676 2833 6.930164 CAGTCCCATGTTCAAATCAAATCAAA 59.070 34.615 0.00 0.00 0.00 2.69
2677 2834 6.457355 CAGTCCCATGTTCAAATCAAATCAA 58.543 36.000 0.00 0.00 0.00 2.57
2678 2835 5.047164 CCAGTCCCATGTTCAAATCAAATCA 60.047 40.000 0.00 0.00 0.00 2.57
2679 2836 5.413499 CCAGTCCCATGTTCAAATCAAATC 58.587 41.667 0.00 0.00 0.00 2.17
2680 2837 4.223477 CCCAGTCCCATGTTCAAATCAAAT 59.777 41.667 0.00 0.00 0.00 2.32
2681 2838 3.577848 CCCAGTCCCATGTTCAAATCAAA 59.422 43.478 0.00 0.00 0.00 2.69
2682 2839 3.164268 CCCAGTCCCATGTTCAAATCAA 58.836 45.455 0.00 0.00 0.00 2.57
2683 2840 2.806434 CCCAGTCCCATGTTCAAATCA 58.194 47.619 0.00 0.00 0.00 2.57
2684 2841 1.478105 GCCCAGTCCCATGTTCAAATC 59.522 52.381 0.00 0.00 0.00 2.17
2685 2842 1.203162 TGCCCAGTCCCATGTTCAAAT 60.203 47.619 0.00 0.00 0.00 2.32
2686 2843 0.187117 TGCCCAGTCCCATGTTCAAA 59.813 50.000 0.00 0.00 0.00 2.69
2687 2844 0.409092 ATGCCCAGTCCCATGTTCAA 59.591 50.000 0.00 0.00 0.00 2.69
2688 2845 0.034186 GATGCCCAGTCCCATGTTCA 60.034 55.000 0.00 0.00 0.00 3.18
2689 2846 0.753111 GGATGCCCAGTCCCATGTTC 60.753 60.000 0.00 0.00 0.00 3.18
2690 2847 1.307647 GGATGCCCAGTCCCATGTT 59.692 57.895 0.00 0.00 0.00 2.71
2691 2848 3.010144 GGATGCCCAGTCCCATGT 58.990 61.111 0.00 0.00 0.00 3.21
2696 2853 2.372074 TAACCGGGATGCCCAGTCC 61.372 63.158 6.32 0.00 45.83 3.85
2697 2854 1.153229 GTAACCGGGATGCCCAGTC 60.153 63.158 6.32 0.00 45.83 3.51
2698 2855 2.676265 GGTAACCGGGATGCCCAGT 61.676 63.158 6.32 0.00 45.83 4.00
2699 2856 2.192175 GGTAACCGGGATGCCCAG 59.808 66.667 6.32 0.00 45.83 4.45
2700 2857 2.611172 TGGTAACCGGGATGCCCA 60.611 61.111 6.32 0.91 45.83 5.36
2701 2858 2.192175 CTGGTAACCGGGATGCCC 59.808 66.667 6.32 0.00 41.09 5.36
2702 2859 2.516225 GCTGGTAACCGGGATGCC 60.516 66.667 6.32 8.16 0.00 4.40
2703 2860 2.516225 GGCTGGTAACCGGGATGC 60.516 66.667 6.32 0.00 0.00 3.91
2704 2861 0.106719 AATGGCTGGTAACCGGGATG 60.107 55.000 6.32 0.00 0.00 3.51
2705 2862 0.629058 AAATGGCTGGTAACCGGGAT 59.371 50.000 6.32 0.00 0.00 3.85
2706 2863 0.406361 AAAATGGCTGGTAACCGGGA 59.594 50.000 6.32 0.00 0.00 5.14
2707 2864 0.815095 GAAAATGGCTGGTAACCGGG 59.185 55.000 6.32 0.00 0.00 5.73
2708 2865 1.743394 GAGAAAATGGCTGGTAACCGG 59.257 52.381 0.00 0.00 0.00 5.28
2709 2866 1.396996 CGAGAAAATGGCTGGTAACCG 59.603 52.381 0.00 0.00 0.00 4.44
2710 2867 2.161609 CACGAGAAAATGGCTGGTAACC 59.838 50.000 0.00 0.00 0.00 2.85
2711 2868 3.071479 TCACGAGAAAATGGCTGGTAAC 58.929 45.455 0.00 0.00 0.00 2.50
2712 2869 3.410631 TCACGAGAAAATGGCTGGTAA 57.589 42.857 0.00 0.00 0.00 2.85
2713 2870 3.410631 TTCACGAGAAAATGGCTGGTA 57.589 42.857 0.00 0.00 0.00 3.25
2714 2871 2.270352 TTCACGAGAAAATGGCTGGT 57.730 45.000 0.00 0.00 0.00 4.00
2715 2872 2.749076 TCATTCACGAGAAAATGGCTGG 59.251 45.455 0.00 0.00 37.29 4.85
2716 2873 4.095334 TCATCATTCACGAGAAAATGGCTG 59.905 41.667 15.92 4.20 37.29 4.85
2717 2874 4.264253 TCATCATTCACGAGAAAATGGCT 58.736 39.130 15.92 0.00 37.29 4.75
2718 2875 4.595116 CTCATCATTCACGAGAAAATGGC 58.405 43.478 15.92 0.00 37.29 4.40
2719 2876 4.095334 TGCTCATCATTCACGAGAAAATGG 59.905 41.667 15.92 10.63 37.29 3.16
2720 2877 5.064325 TCTGCTCATCATTCACGAGAAAATG 59.936 40.000 12.19 12.19 37.29 2.32
2721 2878 5.181009 TCTGCTCATCATTCACGAGAAAAT 58.819 37.500 0.00 0.00 37.29 1.82
2722 2879 4.568956 TCTGCTCATCATTCACGAGAAAA 58.431 39.130 0.00 0.00 37.29 2.29
2723 2880 4.179298 CTCTGCTCATCATTCACGAGAAA 58.821 43.478 0.00 0.00 37.29 2.52
2724 2881 3.194329 ACTCTGCTCATCATTCACGAGAA 59.806 43.478 0.00 0.00 38.31 2.87
2725 2882 2.757314 ACTCTGCTCATCATTCACGAGA 59.243 45.455 0.00 0.00 0.00 4.04
2726 2883 3.114809 GACTCTGCTCATCATTCACGAG 58.885 50.000 0.00 0.00 0.00 4.18
2727 2884 2.159184 GGACTCTGCTCATCATTCACGA 60.159 50.000 0.00 0.00 0.00 4.35
2728 2885 2.200067 GGACTCTGCTCATCATTCACG 58.800 52.381 0.00 0.00 0.00 4.35
2729 2886 2.935201 GTGGACTCTGCTCATCATTCAC 59.065 50.000 0.00 0.00 0.00 3.18
2730 2887 2.836372 AGTGGACTCTGCTCATCATTCA 59.164 45.455 0.00 0.00 0.00 2.57
2731 2888 3.118847 TGAGTGGACTCTGCTCATCATTC 60.119 47.826 8.24 0.00 43.25 2.67
2732 2889 2.836372 TGAGTGGACTCTGCTCATCATT 59.164 45.455 8.24 0.00 43.25 2.57
2733 2890 2.464782 TGAGTGGACTCTGCTCATCAT 58.535 47.619 8.24 0.00 43.25 2.45
2734 2891 1.928868 TGAGTGGACTCTGCTCATCA 58.071 50.000 8.24 0.00 43.25 3.07
2737 2894 1.928868 TGATGAGTGGACTCTGCTCA 58.071 50.000 8.24 5.95 43.25 4.26
2738 2895 2.429971 TCATGATGAGTGGACTCTGCTC 59.570 50.000 8.24 3.74 43.25 4.26
2739 2896 2.431419 CTCATGATGAGTGGACTCTGCT 59.569 50.000 14.17 0.00 43.25 4.24
2740 2897 2.429971 TCTCATGATGAGTGGACTCTGC 59.570 50.000 20.82 1.36 44.58 4.26
2741 2898 4.732672 TTCTCATGATGAGTGGACTCTG 57.267 45.455 20.82 0.00 44.58 3.35
2742 2899 6.183360 GGTTATTCTCATGATGAGTGGACTCT 60.183 42.308 20.82 3.64 44.58 3.24
2743 2900 5.988561 GGTTATTCTCATGATGAGTGGACTC 59.011 44.000 20.82 9.23 44.58 3.36
2744 2901 5.163258 GGGTTATTCTCATGATGAGTGGACT 60.163 44.000 20.82 6.34 44.58 3.85
2745 2902 5.059833 GGGTTATTCTCATGATGAGTGGAC 58.940 45.833 20.82 14.60 44.58 4.02
2746 2903 4.721274 TGGGTTATTCTCATGATGAGTGGA 59.279 41.667 20.82 9.74 44.58 4.02
2747 2904 5.039920 TGGGTTATTCTCATGATGAGTGG 57.960 43.478 20.82 0.00 44.58 4.00
2748 2905 6.531923 AGATGGGTTATTCTCATGATGAGTG 58.468 40.000 20.82 0.00 44.58 3.51
2749 2906 6.760440 AGATGGGTTATTCTCATGATGAGT 57.240 37.500 20.82 6.57 44.58 3.41
2750 2907 6.817641 GCTAGATGGGTTATTCTCATGATGAG 59.182 42.308 16.15 16.15 45.59 2.90
2751 2908 6.270695 TGCTAGATGGGTTATTCTCATGATGA 59.729 38.462 0.00 0.00 37.38 2.92
2752 2909 6.470278 TGCTAGATGGGTTATTCTCATGATG 58.530 40.000 0.00 0.00 37.38 3.07
2753 2910 6.692849 TGCTAGATGGGTTATTCTCATGAT 57.307 37.500 0.00 0.00 37.38 2.45
2754 2911 6.470278 CATGCTAGATGGGTTATTCTCATGA 58.530 40.000 0.00 0.00 37.38 3.07
2755 2912 5.646793 CCATGCTAGATGGGTTATTCTCATG 59.353 44.000 11.39 0.00 37.38 3.07
2756 2913 5.549228 TCCATGCTAGATGGGTTATTCTCAT 59.451 40.000 16.48 0.00 40.39 2.90
2757 2914 4.907269 TCCATGCTAGATGGGTTATTCTCA 59.093 41.667 16.48 0.00 39.60 3.27
2758 2915 5.489792 TCCATGCTAGATGGGTTATTCTC 57.510 43.478 16.48 0.00 39.60 2.87
2759 2916 5.608437 TCTTCCATGCTAGATGGGTTATTCT 59.392 40.000 16.48 0.00 39.60 2.40
2760 2917 5.869579 TCTTCCATGCTAGATGGGTTATTC 58.130 41.667 16.48 0.00 39.60 1.75
2761 2918 5.912149 TCTTCCATGCTAGATGGGTTATT 57.088 39.130 16.48 0.00 39.60 1.40
2762 2919 7.761981 ATATCTTCCATGCTAGATGGGTTAT 57.238 36.000 16.48 11.44 39.60 1.89
2763 2920 7.397221 CAATATCTTCCATGCTAGATGGGTTA 58.603 38.462 16.48 6.90 39.60 2.85
2764 2921 6.243900 CAATATCTTCCATGCTAGATGGGTT 58.756 40.000 16.48 7.06 39.60 4.11
2765 2922 5.805751 GCAATATCTTCCATGCTAGATGGGT 60.806 44.000 16.48 7.44 39.60 4.51
2766 2923 4.639310 GCAATATCTTCCATGCTAGATGGG 59.361 45.833 16.48 4.94 39.60 4.00
2767 2924 4.639310 GGCAATATCTTCCATGCTAGATGG 59.361 45.833 14.61 12.51 38.79 3.51
2768 2925 5.250982 TGGCAATATCTTCCATGCTAGATG 58.749 41.667 14.61 0.00 38.79 2.90
2769 2926 5.498393 CTGGCAATATCTTCCATGCTAGAT 58.502 41.667 4.23 11.19 46.50 1.98
2770 2927 4.805272 GCTGGCAATATCTTCCATGCTAGA 60.805 45.833 13.11 0.00 46.50 2.43
2771 2928 3.439476 GCTGGCAATATCTTCCATGCTAG 59.561 47.826 5.72 5.72 46.36 3.42
2772 2929 3.415212 GCTGGCAATATCTTCCATGCTA 58.585 45.455 0.00 0.00 38.79 3.49
2773 2930 2.236766 GCTGGCAATATCTTCCATGCT 58.763 47.619 0.00 0.00 38.79 3.79
2774 2931 1.271656 GGCTGGCAATATCTTCCATGC 59.728 52.381 0.00 0.00 38.06 4.06
2775 2932 1.891150 GGGCTGGCAATATCTTCCATG 59.109 52.381 2.88 0.00 0.00 3.66
2776 2933 1.785208 AGGGCTGGCAATATCTTCCAT 59.215 47.619 2.88 0.00 0.00 3.41
2777 2934 1.225373 AGGGCTGGCAATATCTTCCA 58.775 50.000 2.88 0.00 0.00 3.53
2778 2935 2.373502 ACTAGGGCTGGCAATATCTTCC 59.626 50.000 2.88 0.00 0.00 3.46
2779 2936 3.778954 ACTAGGGCTGGCAATATCTTC 57.221 47.619 2.88 0.00 0.00 2.87
2780 2937 3.435601 CCAACTAGGGCTGGCAATATCTT 60.436 47.826 2.88 0.00 0.00 2.40
2781 2938 2.107204 CCAACTAGGGCTGGCAATATCT 59.893 50.000 2.88 0.00 0.00 1.98
2782 2939 2.158608 ACCAACTAGGGCTGGCAATATC 60.159 50.000 2.88 0.00 43.89 1.63
2783 2940 1.852965 ACCAACTAGGGCTGGCAATAT 59.147 47.619 2.88 0.00 43.89 1.28
2784 2941 1.295020 ACCAACTAGGGCTGGCAATA 58.705 50.000 2.88 0.00 43.89 1.90
2785 2942 1.064685 GTACCAACTAGGGCTGGCAAT 60.065 52.381 2.88 0.00 43.89 3.56
2786 2943 0.326927 GTACCAACTAGGGCTGGCAA 59.673 55.000 2.88 0.00 43.89 4.52
2787 2944 0.838554 TGTACCAACTAGGGCTGGCA 60.839 55.000 2.88 0.00 43.89 4.92
2788 2945 0.546598 ATGTACCAACTAGGGCTGGC 59.453 55.000 7.49 0.00 43.89 4.85
2789 2946 1.837439 TCATGTACCAACTAGGGCTGG 59.163 52.381 6.30 6.30 43.89 4.85
2790 2947 2.743183 GCTCATGTACCAACTAGGGCTG 60.743 54.545 0.00 0.00 43.89 4.85
2791 2948 1.486726 GCTCATGTACCAACTAGGGCT 59.513 52.381 0.00 0.00 43.89 5.19
2792 2949 1.209504 TGCTCATGTACCAACTAGGGC 59.790 52.381 0.00 0.00 43.89 5.19
2793 2950 3.627395 TTGCTCATGTACCAACTAGGG 57.373 47.619 0.00 0.00 43.89 3.53
2794 2951 4.271049 CGAATTGCTCATGTACCAACTAGG 59.729 45.833 0.00 0.00 45.67 3.02
2795 2952 5.109210 TCGAATTGCTCATGTACCAACTAG 58.891 41.667 0.00 0.00 0.00 2.57
2796 2953 5.079689 TCGAATTGCTCATGTACCAACTA 57.920 39.130 0.00 0.00 0.00 2.24
2797 2954 3.935203 CTCGAATTGCTCATGTACCAACT 59.065 43.478 0.00 0.00 0.00 3.16
2798 2955 3.485877 GCTCGAATTGCTCATGTACCAAC 60.486 47.826 0.00 0.00 0.00 3.77
2799 2956 2.677836 GCTCGAATTGCTCATGTACCAA 59.322 45.455 0.00 0.00 0.00 3.67
2800 2957 2.279741 GCTCGAATTGCTCATGTACCA 58.720 47.619 0.00 0.00 0.00 3.25
2801 2958 2.279741 TGCTCGAATTGCTCATGTACC 58.720 47.619 0.00 0.00 0.00 3.34
2802 2959 4.507756 TGTATGCTCGAATTGCTCATGTAC 59.492 41.667 0.00 0.00 0.00 2.90
2803 2960 4.692228 TGTATGCTCGAATTGCTCATGTA 58.308 39.130 0.00 0.00 0.00 2.29
2804 2961 3.534554 TGTATGCTCGAATTGCTCATGT 58.465 40.909 0.00 0.00 0.00 3.21
2805 2962 4.541085 TTGTATGCTCGAATTGCTCATG 57.459 40.909 0.00 0.00 0.00 3.07
2806 2963 5.106197 TGTTTTGTATGCTCGAATTGCTCAT 60.106 36.000 0.00 0.00 0.00 2.90
2807 2964 4.215185 TGTTTTGTATGCTCGAATTGCTCA 59.785 37.500 0.00 0.00 0.00 4.26
2808 2965 4.722194 TGTTTTGTATGCTCGAATTGCTC 58.278 39.130 0.00 0.00 0.00 4.26
2809 2966 4.764679 TGTTTTGTATGCTCGAATTGCT 57.235 36.364 0.00 0.00 0.00 3.91
2810 2967 7.684062 AATATGTTTTGTATGCTCGAATTGC 57.316 32.000 0.00 0.00 0.00 3.56
2833 2990 8.466798 GCCAAACTCTAAGCCTTCAAATAATAA 58.533 33.333 0.00 0.00 0.00 1.40
2834 2991 7.996385 GCCAAACTCTAAGCCTTCAAATAATA 58.004 34.615 0.00 0.00 0.00 0.98
2835 2992 6.867550 GCCAAACTCTAAGCCTTCAAATAAT 58.132 36.000 0.00 0.00 0.00 1.28
2836 2993 6.267496 GCCAAACTCTAAGCCTTCAAATAA 57.733 37.500 0.00 0.00 0.00 1.40
2837 2994 5.897377 GCCAAACTCTAAGCCTTCAAATA 57.103 39.130 0.00 0.00 0.00 1.40
2838 2995 4.790765 GCCAAACTCTAAGCCTTCAAAT 57.209 40.909 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.