Multiple sequence alignment - TraesCS6A01G171300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G171300 chr6A 100.000 3364 0 0 4110 7473 181898723 181895360 0.000000e+00 6213.0
1 TraesCS6A01G171300 chr6A 100.000 2843 0 0 1 2843 181902832 181899990 0.000000e+00 5251.0
2 TraesCS6A01G171300 chr6A 100.000 851 0 0 3072 3922 181899761 181898911 0.000000e+00 1572.0
3 TraesCS6A01G171300 chr6A 96.429 168 4 1 5891 6056 584908880 584909047 7.390000e-70 276.0
4 TraesCS6A01G171300 chr6A 89.560 182 16 3 5891 6069 591827959 591828140 2.100000e-55 228.0
5 TraesCS6A01G171300 chr6B 90.431 2508 97 52 379 2843 239291055 239288648 0.000000e+00 3169.0
6 TraesCS6A01G171300 chr6B 96.566 1718 45 6 4110 5820 239287509 239285799 0.000000e+00 2833.0
7 TraesCS6A01G171300 chr6B 93.568 1306 37 19 6176 7473 239285664 239284398 0.000000e+00 1903.0
8 TraesCS6A01G171300 chr6B 96.454 846 25 2 3082 3922 239288391 239287546 0.000000e+00 1391.0
9 TraesCS6A01G171300 chr6B 87.603 121 13 2 210 328 239291187 239291067 1.010000e-28 139.0
10 TraesCS6A01G171300 chr6B 86.022 93 9 3 6061 6149 239285753 239285661 6.170000e-16 97.1
11 TraesCS6A01G171300 chr6D 97.235 1736 42 5 4110 5843 139312426 139310695 0.000000e+00 2935.0
12 TraesCS6A01G171300 chr6D 95.205 1418 41 9 6058 7473 139310700 139309308 0.000000e+00 2217.0
13 TraesCS6A01G171300 chr6D 91.721 1232 43 20 356 1574 139316037 139314852 0.000000e+00 1655.0
14 TraesCS6A01G171300 chr6D 96.588 850 24 2 3078 3922 139313314 139312465 0.000000e+00 1404.0
15 TraesCS6A01G171300 chr6D 92.540 630 27 6 1640 2268 139314600 139313990 0.000000e+00 885.0
16 TraesCS6A01G171300 chr6D 96.318 516 17 2 2330 2843 139313904 139313389 0.000000e+00 846.0
17 TraesCS6A01G171300 chr6D 95.522 134 6 0 77 210 139316435 139316302 1.630000e-51 215.0
18 TraesCS6A01G171300 chr6D 97.872 94 2 0 2263 2356 139313904 139313997 6.000000e-36 163.0
19 TraesCS6A01G171300 chr6D 91.803 61 1 2 5838 5894 38896878 38896818 1.730000e-11 82.4
20 TraesCS6A01G171300 chr7A 97.126 174 2 2 5891 6062 121929833 121929661 2.640000e-74 291.0
21 TraesCS6A01G171300 chr7A 87.075 147 19 0 5403 5549 566541485 566541631 4.640000e-37 167.0
22 TraesCS6A01G171300 chr5D 96.532 173 3 2 5891 6061 51999286 51999115 4.410000e-72 283.0
23 TraesCS6A01G171300 chr5D 97.576 165 4 0 5891 6055 544792950 544792786 4.410000e-72 283.0
24 TraesCS6A01G171300 chr5D 97.546 163 2 1 5891 6051 381562022 381562184 2.050000e-70 278.0
25 TraesCS6A01G171300 chr1A 94.857 175 8 1 5891 6064 521852959 521853133 9.550000e-69 272.0
26 TraesCS6A01G171300 chr1A 91.262 103 7 2 5964 6066 7664882 7664982 1.010000e-28 139.0
27 TraesCS6A01G171300 chr1A 94.737 57 0 1 5839 5892 521852936 521852992 1.340000e-12 86.1
28 TraesCS6A01G171300 chr3A 95.322 171 6 2 5891 6060 401557395 401557564 3.440000e-68 270.0
29 TraesCS6A01G171300 chr3A 93.333 180 11 1 5893 6071 11688695 11688874 1.600000e-66 265.0
30 TraesCS6A01G171300 chr3A 93.333 180 11 1 5893 6071 11714030 11714209 1.600000e-66 265.0
31 TraesCS6A01G171300 chr3A 90.722 194 15 3 5891 6082 425145352 425145544 9.620000e-64 255.0
32 TraesCS6A01G171300 chr3A 98.824 85 1 0 5965 6049 36477677 36477761 1.300000e-32 152.0
33 TraesCS6A01G171300 chr3A 93.750 96 5 1 5965 6060 32562987 32563081 7.820000e-30 143.0
34 TraesCS6A01G171300 chr7D 89.116 147 16 0 5403 5549 500630263 500630409 4.610000e-42 183.0
35 TraesCS6A01G171300 chr7B 86.395 147 20 0 5403 5549 528766987 528767133 2.160000e-35 161.0
36 TraesCS6A01G171300 chr7B 79.894 189 35 3 4272 4457 528766046 528766234 1.310000e-27 135.0
37 TraesCS6A01G171300 chrUn 94.792 96 4 1 5965 6060 32482685 32482591 1.680000e-31 148.0
38 TraesCS6A01G171300 chr5A 90.110 91 2 4 5964 6054 3326941 3327024 2.200000e-20 111.0
39 TraesCS6A01G171300 chr1D 92.063 63 1 2 5833 5892 284242744 284242683 1.340000e-12 86.1
40 TraesCS6A01G171300 chr5B 80.412 97 9 2 2220 2314 44985705 44985617 1.740000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G171300 chr6A 181895360 181902832 7472 True 4345.333333 6213 100.000000 1 7473 3 chr6A.!!$R1 7472
1 TraesCS6A01G171300 chr6B 239284398 239291187 6789 True 1588.683333 3169 91.774000 210 7473 6 chr6B.!!$R1 7263
2 TraesCS6A01G171300 chr6D 139309308 139316435 7127 True 1451.000000 2935 95.018429 77 7473 7 chr6D.!!$R2 7396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.029567 CTAGAGCTTGTACCGGCGAG 59.970 60.0 9.30 0.06 0.00 5.03 F
53 54 0.244450 TACCGGCGAGTTGTAACTGG 59.756 55.0 9.30 2.18 39.88 4.00 F
377 522 0.261696 AAAGCCTGTGTGGAAAGGGT 59.738 50.0 0.00 0.00 46.12 4.34 F
1388 1568 0.447801 CTTTTCGGCCGGTGATTGAG 59.552 55.0 27.83 9.99 0.00 3.02 F
1759 2127 0.749454 GCAGGAATCTGGCGACCAAT 60.749 55.0 0.00 0.00 41.19 3.16 F
3183 3604 0.849094 ATGCCACCACCCCCTAGAAA 60.849 55.0 0.00 0.00 0.00 2.52 F
3779 4202 0.604578 TCCGGCACAAGGTAGTACAC 59.395 55.0 0.00 0.00 0.00 2.90 F
4959 5389 1.361668 GGTACTGTGTGGAGCATGCG 61.362 60.0 13.01 0.00 0.00 4.73 F
5686 6116 1.565305 CTACGCCTCAGCTTCATGAC 58.435 55.0 0.00 0.00 36.60 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1568 1.953772 CACGGGGTACTGGCAAAAC 59.046 57.895 0.00 0.00 0.00 2.43 R
1417 1598 2.186076 GATACGAGACAAGAAGCACGG 58.814 52.381 0.00 0.00 0.00 4.94 R
2091 2462 1.735571 CGTTGTGGGAAAAGTATCCGG 59.264 52.381 0.00 0.00 40.62 5.14 R
3251 3672 0.890683 CCATTCTTGCCACCTTGACC 59.109 55.000 0.00 0.00 0.00 4.02 R
3458 3879 1.057636 CAGCAGCAAGAAAACATGCG 58.942 50.000 0.00 0.00 46.98 4.73 R
4334 4757 0.181824 AAGCCACGGTGTAAGGTGTT 59.818 50.000 7.45 0.00 32.30 3.32 R
5725 6155 1.597663 GATTTCGCAGGGTACATTCCG 59.402 52.381 0.00 0.00 0.00 4.30 R
6034 6489 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06 R
6971 7436 0.038526 ACAATTCTTGCTGCTGCTGC 60.039 50.000 22.51 22.51 40.48 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.635765 TGTCTAATCTAAAAGAACAAATGGCT 57.364 30.769 0.00 0.00 0.00 4.75
26 27 9.733556 TGTCTAATCTAAAAGAACAAATGGCTA 57.266 29.630 0.00 0.00 0.00 3.93
30 31 6.743575 TCTAAAAGAACAAATGGCTAGAGC 57.256 37.500 0.00 0.00 41.14 4.09
31 32 6.476378 TCTAAAAGAACAAATGGCTAGAGCT 58.524 36.000 0.81 0.00 41.70 4.09
32 33 6.942576 TCTAAAAGAACAAATGGCTAGAGCTT 59.057 34.615 0.81 0.00 41.70 3.74
33 34 5.382618 AAAGAACAAATGGCTAGAGCTTG 57.617 39.130 0.81 1.27 41.70 4.01
34 35 4.026356 AGAACAAATGGCTAGAGCTTGT 57.974 40.909 0.81 1.90 38.18 3.16
35 36 5.165961 AGAACAAATGGCTAGAGCTTGTA 57.834 39.130 7.74 0.00 36.40 2.41
36 37 4.938226 AGAACAAATGGCTAGAGCTTGTAC 59.062 41.667 7.74 0.00 36.40 2.90
37 38 3.610911 ACAAATGGCTAGAGCTTGTACC 58.389 45.455 5.99 0.00 35.90 3.34
38 39 2.604046 AATGGCTAGAGCTTGTACCG 57.396 50.000 0.81 0.00 41.70 4.02
39 40 0.753262 ATGGCTAGAGCTTGTACCGG 59.247 55.000 0.00 0.00 41.70 5.28
40 41 1.227292 GGCTAGAGCTTGTACCGGC 60.227 63.158 0.00 0.00 41.70 6.13
41 42 1.589196 GCTAGAGCTTGTACCGGCG 60.589 63.158 0.00 0.00 38.21 6.46
42 43 2.001361 GCTAGAGCTTGTACCGGCGA 62.001 60.000 9.30 0.00 38.21 5.54
43 44 0.029567 CTAGAGCTTGTACCGGCGAG 59.970 60.000 9.30 0.06 0.00 5.03
44 45 0.679002 TAGAGCTTGTACCGGCGAGT 60.679 55.000 9.30 7.43 0.00 4.18
45 46 1.080025 GAGCTTGTACCGGCGAGTT 60.080 57.895 9.30 0.00 0.00 3.01
46 47 1.352156 GAGCTTGTACCGGCGAGTTG 61.352 60.000 9.30 0.00 0.00 3.16
47 48 1.666872 GCTTGTACCGGCGAGTTGT 60.667 57.895 9.30 0.00 0.00 3.32
48 49 0.388907 GCTTGTACCGGCGAGTTGTA 60.389 55.000 9.30 0.00 0.00 2.41
49 50 1.936203 GCTTGTACCGGCGAGTTGTAA 60.936 52.381 9.30 0.77 0.00 2.41
50 51 1.723003 CTTGTACCGGCGAGTTGTAAC 59.277 52.381 9.30 0.36 0.00 2.50
51 52 0.961019 TGTACCGGCGAGTTGTAACT 59.039 50.000 9.30 0.00 43.16 2.24
52 53 1.336148 TGTACCGGCGAGTTGTAACTG 60.336 52.381 9.30 0.00 39.88 3.16
53 54 0.244450 TACCGGCGAGTTGTAACTGG 59.756 55.000 9.30 2.18 39.88 4.00
68 69 8.669394 GTTGTAACTGGCAACTCAATAATTAC 57.331 34.615 0.00 0.00 41.94 1.89
69 70 8.512138 GTTGTAACTGGCAACTCAATAATTACT 58.488 33.333 0.00 0.00 41.94 2.24
70 71 8.263940 TGTAACTGGCAACTCAATAATTACTC 57.736 34.615 0.00 0.00 37.61 2.59
71 72 6.422776 AACTGGCAACTCAATAATTACTCG 57.577 37.500 0.00 0.00 37.61 4.18
72 73 5.730550 ACTGGCAACTCAATAATTACTCGA 58.269 37.500 0.00 0.00 37.61 4.04
73 74 6.170506 ACTGGCAACTCAATAATTACTCGAA 58.829 36.000 0.00 0.00 37.61 3.71
74 75 6.653320 ACTGGCAACTCAATAATTACTCGAAA 59.347 34.615 0.00 0.00 37.61 3.46
75 76 7.336931 ACTGGCAACTCAATAATTACTCGAAAT 59.663 33.333 0.00 0.00 37.61 2.17
103 104 2.822399 CCACCGGCAGGATCTACC 59.178 66.667 10.86 0.00 41.02 3.18
104 105 2.063979 CCACCGGCAGGATCTACCA 61.064 63.158 10.86 0.00 42.04 3.25
124 125 1.173913 AACACGGCCTGGAATTTAGC 58.826 50.000 0.00 0.00 0.00 3.09
126 127 1.340991 ACACGGCCTGGAATTTAGCAT 60.341 47.619 0.00 0.00 0.00 3.79
128 129 1.340991 ACGGCCTGGAATTTAGCATGT 60.341 47.619 0.00 0.00 0.00 3.21
219 220 2.292267 GCAAGTGGATCATGAACCGAT 58.708 47.619 16.43 5.36 0.00 4.18
223 224 4.327982 AGTGGATCATGAACCGATAGTG 57.672 45.455 16.43 0.00 0.00 2.74
227 228 4.161377 TGGATCATGAACCGATAGTGAACA 59.839 41.667 16.43 0.00 0.00 3.18
340 485 1.225855 CGCAAGTAAAGCCTGTGTGA 58.774 50.000 0.00 0.00 0.00 3.58
341 486 1.069906 CGCAAGTAAAGCCTGTGTGAC 60.070 52.381 0.00 0.00 0.00 3.67
342 487 2.222027 GCAAGTAAAGCCTGTGTGACT 58.778 47.619 0.00 0.00 0.00 3.41
343 488 2.618709 GCAAGTAAAGCCTGTGTGACTT 59.381 45.455 0.00 0.00 0.00 3.01
344 489 3.066760 GCAAGTAAAGCCTGTGTGACTTT 59.933 43.478 0.00 0.00 37.40 2.66
345 490 4.789802 GCAAGTAAAGCCTGTGTGACTTTC 60.790 45.833 0.00 0.00 35.38 2.62
346 491 4.150897 AGTAAAGCCTGTGTGACTTTCA 57.849 40.909 0.00 0.00 35.38 2.69
348 493 4.947388 AGTAAAGCCTGTGTGACTTTCAAA 59.053 37.500 0.00 0.00 35.38 2.69
349 494 4.799564 AAAGCCTGTGTGACTTTCAAAA 57.200 36.364 0.00 0.00 0.00 2.44
350 495 4.799564 AAGCCTGTGTGACTTTCAAAAA 57.200 36.364 0.00 0.00 0.00 1.94
377 522 0.261696 AAAGCCTGTGTGGAAAGGGT 59.738 50.000 0.00 0.00 46.12 4.34
380 525 2.260869 CCTGTGTGGAAAGGGTGCG 61.261 63.158 0.00 0.00 38.35 5.34
418 563 9.442047 AGAATCTCATTTGACCAAGTTAACTAG 57.558 33.333 8.92 6.29 0.00 2.57
458 605 4.175516 ACACAAAGCACAAAATCACTGTG 58.824 39.130 0.17 0.17 45.71 3.66
640 790 2.264109 TTTAAGACGCGAGCAGAGAG 57.736 50.000 15.93 0.00 0.00 3.20
641 791 1.450025 TTAAGACGCGAGCAGAGAGA 58.550 50.000 15.93 0.00 0.00 3.10
642 792 1.010580 TAAGACGCGAGCAGAGAGAG 58.989 55.000 15.93 0.00 0.00 3.20
643 793 0.675208 AAGACGCGAGCAGAGAGAGA 60.675 55.000 15.93 0.00 0.00 3.10
644 794 1.089481 AGACGCGAGCAGAGAGAGAG 61.089 60.000 15.93 0.00 0.00 3.20
645 795 1.078778 ACGCGAGCAGAGAGAGAGA 60.079 57.895 15.93 0.00 0.00 3.10
646 796 1.089481 ACGCGAGCAGAGAGAGAGAG 61.089 60.000 15.93 0.00 0.00 3.20
647 797 0.809636 CGCGAGCAGAGAGAGAGAGA 60.810 60.000 0.00 0.00 0.00 3.10
650 800 2.477825 CGAGCAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
668 818 5.276440 AGAGAGAGAGAGAGAGAGAGAGTT 58.724 45.833 0.00 0.00 0.00 3.01
669 819 6.436027 AGAGAGAGAGAGAGAGAGAGAGTTA 58.564 44.000 0.00 0.00 0.00 2.24
670 820 6.897966 AGAGAGAGAGAGAGAGAGAGAGTTAA 59.102 42.308 0.00 0.00 0.00 2.01
764 919 1.449246 CTCCTCTTTCCGCTGCCTG 60.449 63.158 0.00 0.00 0.00 4.85
1117 1297 3.486252 CTCCGCTTCCGATCCCGAC 62.486 68.421 0.00 0.00 38.22 4.79
1145 1325 2.854214 CTGTTGATCTCTCGCGCGC 61.854 63.158 27.95 23.91 0.00 6.86
1181 1361 4.142600 GCGATAATTAATGATGCCTGGGTC 60.143 45.833 0.00 0.00 0.00 4.46
1183 1363 2.683211 ATTAATGATGCCTGGGTCCC 57.317 50.000 0.00 0.00 0.00 4.46
1337 1517 4.096382 GTCACCGAAATGTAAGCATCCATT 59.904 41.667 0.00 0.00 33.50 3.16
1344 1524 2.279741 TGTAAGCATCCATTCTCGCAC 58.720 47.619 0.00 0.00 0.00 5.34
1388 1568 0.447801 CTTTTCGGCCGGTGATTGAG 59.552 55.000 27.83 9.99 0.00 3.02
1401 1581 3.057526 GGTGATTGAGTTTTGCCAGTACC 60.058 47.826 0.00 0.00 0.00 3.34
1417 1598 1.692173 TACCCCGTGCATCCTAAGCC 61.692 60.000 0.00 0.00 0.00 4.35
1418 1599 2.203209 CCCGTGCATCCTAAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
1453 1634 1.745653 GTATCCAACAGCAAGCTTCCC 59.254 52.381 0.00 0.00 0.00 3.97
1526 1707 3.817647 ACTCAAAACATTGTGAGAGCTCC 59.182 43.478 17.03 2.40 43.32 4.70
1620 1803 2.029649 CAGGGATTTGAGCAACAACCAG 60.030 50.000 0.00 0.00 38.29 4.00
1741 2109 2.703416 TCACTCTGAATGTGGTGATGC 58.297 47.619 0.00 0.00 34.38 3.91
1759 2127 0.749454 GCAGGAATCTGGCGACCAAT 60.749 55.000 0.00 0.00 41.19 3.16
1802 2170 3.219176 ACTCCATATCCAACATGGCTG 57.781 47.619 0.00 0.00 42.36 4.85
1804 2172 1.214923 TCCATATCCAACATGGCTGCA 59.785 47.619 0.50 0.00 42.36 4.41
1872 2240 7.798516 GGTTTTATATGCACGACTATGAATGTG 59.201 37.037 0.00 0.00 35.48 3.21
1874 2242 8.432110 TTTATATGCACGACTATGAATGTGTT 57.568 30.769 0.00 0.00 34.86 3.32
1983 2351 3.308530 CGATTTGTTTGGAAACCTCAGC 58.691 45.455 0.00 0.00 38.11 4.26
2025 2393 4.022503 GGCATCTTCAAACTCTGCTCTTTT 60.023 41.667 0.00 0.00 33.43 2.27
2026 2394 5.508657 GGCATCTTCAAACTCTGCTCTTTTT 60.509 40.000 0.00 0.00 33.43 1.94
2091 2462 5.050837 GCAATTTTGTCATCCACACACTTTC 60.051 40.000 0.00 0.00 33.41 2.62
2103 2474 4.083484 CCACACACTTTCCGGATACTTTTC 60.083 45.833 4.15 0.00 0.00 2.29
2351 2747 9.522804 CTACTACCTAATCATCTCTGTTTTGAC 57.477 37.037 0.00 0.00 0.00 3.18
2682 3078 5.531287 GGTTCTGTCAATGTTCTAAGTGGTT 59.469 40.000 0.00 0.00 0.00 3.67
2708 3104 3.022406 CCTTACTACCCTGTAAGCGAGT 58.978 50.000 8.42 0.00 44.66 4.18
2714 3110 3.418684 ACCCTGTAAGCGAGTTTTCAT 57.581 42.857 0.00 0.00 0.00 2.57
2715 3111 3.751518 ACCCTGTAAGCGAGTTTTCATT 58.248 40.909 0.00 0.00 0.00 2.57
2716 3112 4.142038 ACCCTGTAAGCGAGTTTTCATTT 58.858 39.130 0.00 0.00 0.00 2.32
2717 3113 4.583073 ACCCTGTAAGCGAGTTTTCATTTT 59.417 37.500 0.00 0.00 0.00 1.82
2718 3114 5.154222 CCCTGTAAGCGAGTTTTCATTTTC 58.846 41.667 0.00 0.00 0.00 2.29
2719 3115 5.278266 CCCTGTAAGCGAGTTTTCATTTTCA 60.278 40.000 0.00 0.00 0.00 2.69
2720 3116 5.853282 CCTGTAAGCGAGTTTTCATTTTCAG 59.147 40.000 0.00 0.00 0.00 3.02
2721 3117 5.757886 TGTAAGCGAGTTTTCATTTTCAGG 58.242 37.500 0.00 0.00 0.00 3.86
2722 3118 3.288809 AGCGAGTTTTCATTTTCAGGC 57.711 42.857 0.00 0.00 0.00 4.85
2723 3119 2.622942 AGCGAGTTTTCATTTTCAGGCA 59.377 40.909 0.00 0.00 0.00 4.75
2724 3120 2.982470 GCGAGTTTTCATTTTCAGGCAG 59.018 45.455 0.00 0.00 0.00 4.85
2725 3121 2.982470 CGAGTTTTCATTTTCAGGCAGC 59.018 45.455 0.00 0.00 0.00 5.25
2736 3135 3.829886 TTCAGGCAGCAATTTAACTCG 57.170 42.857 0.00 0.00 0.00 4.18
2743 3142 3.058224 GCAGCAATTTAACTCGTCCTGTT 60.058 43.478 0.00 0.00 0.00 3.16
3118 3539 8.709496 GTTGCAATTACAACTGTAGACTTAAC 57.291 34.615 13.32 0.00 45.20 2.01
3183 3604 0.849094 ATGCCACCACCCCCTAGAAA 60.849 55.000 0.00 0.00 0.00 2.52
3226 3647 0.972471 CTGGGGGAAGTGGAAATGCC 60.972 60.000 0.00 0.00 37.10 4.40
3391 3812 1.069823 AGGAAGGATGATAGCAGCACG 59.930 52.381 0.00 0.00 30.33 5.34
3458 3879 4.508662 AGGTACTGCACTTTCTTATGCTC 58.491 43.478 0.00 0.00 42.55 4.26
3526 3947 7.440556 GCTATTTTCAATCAGCTGAGATACTGA 59.559 37.037 22.96 15.11 46.34 3.41
3551 3974 3.909776 AGCTTAAGGCAACCGTAAAAC 57.090 42.857 4.29 0.00 44.79 2.43
3622 4045 8.690203 TGAAAATCATGTTCTTCTACCTTCAA 57.310 30.769 0.00 0.00 0.00 2.69
3677 4100 7.827819 TTGTAAGATAATTGAGTTCTGACCG 57.172 36.000 0.00 0.00 0.00 4.79
3721 4144 2.181975 AGTGCCTTTTGCCTGCATAAT 58.818 42.857 0.00 0.00 40.16 1.28
3763 4186 2.291365 TGATTCATGATGCAACCTCCG 58.709 47.619 0.00 0.00 0.00 4.63
3775 4198 1.125711 AACCTCCGGCACAAGGTAGT 61.126 55.000 12.67 0.00 42.40 2.73
3779 4202 0.604578 TCCGGCACAAGGTAGTACAC 59.395 55.000 0.00 0.00 0.00 2.90
4153 4576 3.187227 ACTGAATTGATTGCACACTCGTC 59.813 43.478 0.00 0.00 0.00 4.20
4334 4757 3.153919 GACAAAGGTTCCCATAACTGCA 58.846 45.455 0.00 0.00 0.00 4.41
4486 4909 7.548196 TCCTGCCGTTTTAAATGAGTTATAG 57.452 36.000 0.00 0.00 0.00 1.31
4543 4970 2.116827 AACGTCAAGTTTGTGGGTGA 57.883 45.000 0.00 0.00 40.88 4.02
4563 4990 4.033009 TGACTGAATCAGCTCTATTCCCA 58.967 43.478 10.62 7.83 34.37 4.37
4585 5015 3.731652 TTTTTGCCAATCTGGAGTGTG 57.268 42.857 0.00 0.00 40.96 3.82
4932 5362 1.882311 GCATCCAAACATCGTGCCA 59.118 52.632 0.00 0.00 0.00 4.92
4959 5389 1.361668 GGTACTGTGTGGAGCATGCG 61.362 60.000 13.01 0.00 0.00 4.73
5202 5632 2.270257 GCATGAGGTGTGCTTGCCA 61.270 57.895 0.00 0.00 39.45 4.92
5351 5781 8.701908 AATACATCCAAGTACCGAGATAGTTA 57.298 34.615 0.00 0.00 0.00 2.24
5399 5829 4.131596 TGCACTAACTACTTGGTTTGTCC 58.868 43.478 0.00 0.00 34.18 4.02
5686 6116 1.565305 CTACGCCTCAGCTTCATGAC 58.435 55.000 0.00 0.00 36.60 3.06
5805 6235 2.038164 AGGTACCGTCTTTCTTTGGGAC 59.962 50.000 6.18 0.00 34.39 4.46
5824 6279 4.757149 GGGACAGATATTCAGTTGTATGGC 59.243 45.833 0.00 0.00 0.00 4.40
5837 6292 8.236585 TCAGTTGTATGGCAGCATTTAATAAT 57.763 30.769 0.00 0.00 0.00 1.28
5838 6293 8.694540 TCAGTTGTATGGCAGCATTTAATAATT 58.305 29.630 0.00 0.00 0.00 1.40
5839 6294 9.316730 CAGTTGTATGGCAGCATTTAATAATTT 57.683 29.630 0.00 0.00 0.00 1.82
5881 6336 7.193377 CACATGATGTGCTATAAGTATTGCA 57.807 36.000 13.15 3.73 41.89 4.08
5891 6346 8.818141 TGCTATAAGTATTGCACATCTAAGTC 57.182 34.615 3.73 0.00 38.99 3.01
5892 6347 8.642432 TGCTATAAGTATTGCACATCTAAGTCT 58.358 33.333 3.73 0.00 38.99 3.24
5913 6368 8.183104 AGTCTAGATGTGCTATAAGTATTGCA 57.817 34.615 0.00 3.73 40.96 4.08
5923 6378 8.818141 TGCTATAAGTATTGCACATCTAAGTC 57.182 34.615 3.73 0.00 38.99 3.01
5924 6379 7.872993 TGCTATAAGTATTGCACATCTAAGTCC 59.127 37.037 3.73 0.00 38.99 3.85
5925 6380 8.091449 GCTATAAGTATTGCACATCTAAGTCCT 58.909 37.037 0.00 0.00 35.12 3.85
5928 6383 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
5929 6384 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
5930 6385 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
5931 6386 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
5932 6387 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
5933 6388 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
5934 6389 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
5935 6390 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
5936 6391 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
5937 6392 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
5938 6393 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
5939 6394 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
5945 6400 8.899427 AGTCCTATGTCATTGATCTTATGTTG 57.101 34.615 0.00 0.00 0.00 3.33
5946 6401 8.708378 AGTCCTATGTCATTGATCTTATGTTGA 58.292 33.333 0.00 0.00 0.00 3.18
5947 6402 8.986847 GTCCTATGTCATTGATCTTATGTTGAG 58.013 37.037 0.00 0.00 0.00 3.02
5948 6403 8.927411 TCCTATGTCATTGATCTTATGTTGAGA 58.073 33.333 0.00 0.00 0.00 3.27
5949 6404 9.722184 CCTATGTCATTGATCTTATGTTGAGAT 57.278 33.333 0.00 0.00 36.60 2.75
5952 6407 8.134905 TGTCATTGATCTTATGTTGAGATTCG 57.865 34.615 0.00 0.00 34.13 3.34
5953 6408 7.765819 TGTCATTGATCTTATGTTGAGATTCGT 59.234 33.333 0.00 0.00 34.13 3.85
5954 6409 8.060679 GTCATTGATCTTATGTTGAGATTCGTG 58.939 37.037 0.00 0.00 34.13 4.35
5955 6410 7.765819 TCATTGATCTTATGTTGAGATTCGTGT 59.234 33.333 0.00 0.00 34.13 4.49
5956 6411 9.034544 CATTGATCTTATGTTGAGATTCGTGTA 57.965 33.333 0.00 0.00 34.13 2.90
5957 6412 8.634475 TTGATCTTATGTTGAGATTCGTGTAG 57.366 34.615 0.00 0.00 34.13 2.74
5958 6413 7.996385 TGATCTTATGTTGAGATTCGTGTAGA 58.004 34.615 0.00 0.00 34.13 2.59
5959 6414 8.633561 TGATCTTATGTTGAGATTCGTGTAGAT 58.366 33.333 0.00 0.00 34.13 1.98
5997 6452 9.512588 TTTTTCTCTTTCTCTCTATGCTTGATT 57.487 29.630 0.00 0.00 0.00 2.57
5998 6453 8.715191 TTTCTCTTTCTCTCTATGCTTGATTC 57.285 34.615 0.00 0.00 0.00 2.52
5999 6454 7.415592 TCTCTTTCTCTCTATGCTTGATTCA 57.584 36.000 0.00 0.00 0.00 2.57
6000 6455 7.264221 TCTCTTTCTCTCTATGCTTGATTCAC 58.736 38.462 0.00 0.00 0.00 3.18
6001 6456 7.123997 TCTCTTTCTCTCTATGCTTGATTCACT 59.876 37.037 0.00 0.00 0.00 3.41
6002 6457 7.264221 TCTTTCTCTCTATGCTTGATTCACTC 58.736 38.462 0.00 0.00 0.00 3.51
6003 6458 6.535963 TTCTCTCTATGCTTGATTCACTCA 57.464 37.500 0.00 0.00 0.00 3.41
6004 6459 5.900425 TCTCTCTATGCTTGATTCACTCAC 58.100 41.667 0.00 0.00 32.17 3.51
6005 6460 5.655974 TCTCTCTATGCTTGATTCACTCACT 59.344 40.000 0.00 0.00 32.17 3.41
6006 6461 6.154192 TCTCTCTATGCTTGATTCACTCACTT 59.846 38.462 0.00 0.00 32.17 3.16
6007 6462 7.340487 TCTCTCTATGCTTGATTCACTCACTTA 59.660 37.037 0.00 0.00 32.17 2.24
6008 6463 7.487484 TCTCTATGCTTGATTCACTCACTTAG 58.513 38.462 0.00 0.00 32.17 2.18
6009 6464 7.340487 TCTCTATGCTTGATTCACTCACTTAGA 59.660 37.037 0.00 0.00 32.17 2.10
6010 6465 8.016301 TCTATGCTTGATTCACTCACTTAGAT 57.984 34.615 0.00 0.00 32.17 1.98
6011 6466 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
6012 6467 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
6013 6468 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
6014 6469 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
6015 6470 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
6016 6471 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
6017 6472 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
6018 6473 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
6019 6474 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
6020 6475 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
6021 6476 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
6022 6477 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
6023 6478 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
6024 6479 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
6025 6480 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
6026 6481 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
6027 6482 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
6049 6504 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
6053 6508 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
6054 6509 1.152118 TGTGCCCTAGACACACCCT 60.152 57.895 12.81 0.00 42.88 4.34
6055 6510 0.766674 TGTGCCCTAGACACACCCTT 60.767 55.000 12.81 0.00 42.88 3.95
6056 6511 1.272807 GTGCCCTAGACACACCCTTA 58.727 55.000 10.07 0.00 37.96 2.69
6199 6658 5.136816 ACAAAGCAAATGCATGTGTCATA 57.863 34.783 18.15 0.00 45.16 2.15
6206 6665 6.808212 AGCAAATGCATGTGTCATAAAGTTAC 59.192 34.615 18.15 0.00 45.16 2.50
6217 6676 5.193679 GTCATAAAGTTACCCTGGCTCATT 58.806 41.667 0.00 0.00 0.00 2.57
6223 6682 5.104259 AGTTACCCTGGCTCATTTCTTAG 57.896 43.478 0.00 0.00 0.00 2.18
6379 6838 2.125391 GTGCGCCTGATGCAGAGA 60.125 61.111 4.18 0.00 44.21 3.10
6415 6874 0.678048 GGCAATCAGGCGAGGAACTT 60.678 55.000 0.00 0.00 41.55 2.66
6442 6901 1.202582 TCTTACAGAGCTCCAGAACGC 59.797 52.381 10.93 0.00 0.00 4.84
6452 6911 0.173481 TCCAGAACGCGAAGGAGATG 59.827 55.000 15.93 0.99 0.00 2.90
6483 6942 6.453092 ACATTTCCTTCTGAGCATTTTCTTG 58.547 36.000 0.00 0.00 0.00 3.02
6514 6973 1.978580 GTGAAAAGGAGGTCTGAGGGA 59.021 52.381 0.00 0.00 0.00 4.20
6540 6999 2.712057 CAAGAATTGGGTGACTGCAC 57.288 50.000 0.00 0.00 43.94 4.57
6650 7109 7.474398 TCAATTATGCTCATTCTTCTCTTCG 57.526 36.000 0.00 0.00 0.00 3.79
6703 7162 2.887152 ACTGTGTTCTCAAATCAAGGGC 59.113 45.455 0.00 0.00 0.00 5.19
6791 7250 8.021396 GGATGTCAAACAAGTACATACCTTTTC 58.979 37.037 0.00 0.00 34.09 2.29
6799 7258 5.193099 AGTACATACCTTTTCCTTGGCAT 57.807 39.130 0.00 0.00 0.00 4.40
6971 7436 7.295930 TGAACTATACATCTCAATAGCGTACG 58.704 38.462 11.84 11.84 0.00 3.67
6972 7437 5.629097 ACTATACATCTCAATAGCGTACGC 58.371 41.667 32.17 32.17 42.33 4.42
6973 7438 2.863401 ACATCTCAATAGCGTACGCA 57.137 45.000 38.58 25.48 44.88 5.24
6986 7451 1.301637 TACGCAGCAGCAGCAAGAA 60.302 52.632 10.77 0.00 45.49 2.52
6987 7452 0.674581 TACGCAGCAGCAGCAAGAAT 60.675 50.000 10.77 0.00 45.49 2.40
6988 7453 1.211969 CGCAGCAGCAGCAAGAATT 59.788 52.632 10.77 0.00 45.49 2.17
6989 7454 1.071019 CGCAGCAGCAGCAAGAATTG 61.071 55.000 10.77 0.00 45.84 2.32
6990 7455 0.038526 GCAGCAGCAGCAAGAATTGT 60.039 50.000 4.63 0.00 44.59 2.71
7051 7516 5.180304 GCTAGCAGTGCTATTTAAATCCTCC 59.820 44.000 24.66 0.00 40.54 4.30
7053 7518 5.372373 AGCAGTGCTATTTAAATCCTCCTC 58.628 41.667 18.11 0.00 36.99 3.71
7054 7519 5.131809 AGCAGTGCTATTTAAATCCTCCTCT 59.868 40.000 18.11 0.00 36.99 3.69
7055 7520 5.825151 GCAGTGCTATTTAAATCCTCCTCTT 59.175 40.000 8.18 0.00 0.00 2.85
7056 7521 6.319911 GCAGTGCTATTTAAATCCTCCTCTTT 59.680 38.462 8.18 0.00 0.00 2.52
7057 7522 7.680588 GCAGTGCTATTTAAATCCTCCTCTTTG 60.681 40.741 8.18 0.00 0.00 2.77
7058 7523 6.319911 AGTGCTATTTAAATCCTCCTCTTTGC 59.680 38.462 3.39 0.00 0.00 3.68
7059 7524 5.594317 TGCTATTTAAATCCTCCTCTTTGCC 59.406 40.000 3.39 0.00 0.00 4.52
7060 7525 5.594317 GCTATTTAAATCCTCCTCTTTGCCA 59.406 40.000 3.39 0.00 0.00 4.92
7061 7526 6.266330 GCTATTTAAATCCTCCTCTTTGCCAT 59.734 38.462 3.39 0.00 0.00 4.40
7062 7527 6.721704 ATTTAAATCCTCCTCTTTGCCATC 57.278 37.500 0.00 0.00 0.00 3.51
7063 7528 3.744940 AAATCCTCCTCTTTGCCATCA 57.255 42.857 0.00 0.00 0.00 3.07
7064 7529 3.967467 AATCCTCCTCTTTGCCATCAT 57.033 42.857 0.00 0.00 0.00 2.45
7065 7530 5.393068 AAATCCTCCTCTTTGCCATCATA 57.607 39.130 0.00 0.00 0.00 2.15
7066 7531 4.637387 ATCCTCCTCTTTGCCATCATAG 57.363 45.455 0.00 0.00 0.00 2.23
7070 7535 5.247110 TCCTCCTCTTTGCCATCATAGATAC 59.753 44.000 0.00 0.00 31.49 2.24
7071 7536 5.139435 TCCTCTTTGCCATCATAGATACG 57.861 43.478 0.00 0.00 31.49 3.06
7109 7575 1.347062 TGCCAAAATCAAAGACCCCC 58.653 50.000 0.00 0.00 0.00 5.40
7238 7704 0.182061 TGGCCATGATCTCCAGCTTC 59.818 55.000 0.00 0.00 0.00 3.86
7241 7707 1.270732 GCCATGATCTCCAGCTTCGAT 60.271 52.381 0.00 0.00 0.00 3.59
7289 7755 1.424493 GCCCGAACATCAAGAGCTCG 61.424 60.000 8.37 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.635765 AGCCATTTGTTCTTTTAGATTAGACA 57.364 30.769 0.00 0.00 0.00 3.41
4 5 8.893727 GCTCTAGCCATTTGTTCTTTTAGATTA 58.106 33.333 0.00 0.00 34.31 1.75
5 6 7.613411 AGCTCTAGCCATTTGTTCTTTTAGATT 59.387 33.333 0.00 0.00 43.38 2.40
6 7 7.115414 AGCTCTAGCCATTTGTTCTTTTAGAT 58.885 34.615 0.00 0.00 43.38 1.98
7 8 6.476378 AGCTCTAGCCATTTGTTCTTTTAGA 58.524 36.000 0.00 0.00 43.38 2.10
8 9 6.749923 AGCTCTAGCCATTTGTTCTTTTAG 57.250 37.500 0.00 0.00 43.38 1.85
9 10 6.490040 ACAAGCTCTAGCCATTTGTTCTTTTA 59.510 34.615 0.00 0.00 43.38 1.52
10 11 5.302823 ACAAGCTCTAGCCATTTGTTCTTTT 59.697 36.000 0.00 0.00 43.38 2.27
11 12 4.829492 ACAAGCTCTAGCCATTTGTTCTTT 59.171 37.500 0.00 0.00 43.38 2.52
12 13 4.401925 ACAAGCTCTAGCCATTTGTTCTT 58.598 39.130 0.00 0.00 43.38 2.52
13 14 4.026356 ACAAGCTCTAGCCATTTGTTCT 57.974 40.909 0.00 0.00 43.38 3.01
14 15 4.095036 GGTACAAGCTCTAGCCATTTGTTC 59.905 45.833 11.74 7.97 43.38 3.18
15 16 4.010349 GGTACAAGCTCTAGCCATTTGTT 58.990 43.478 11.74 0.59 43.38 2.83
16 17 3.610911 GGTACAAGCTCTAGCCATTTGT 58.389 45.455 11.36 11.36 43.38 2.83
17 18 2.609459 CGGTACAAGCTCTAGCCATTTG 59.391 50.000 0.00 0.00 43.38 2.32
18 19 2.420129 CCGGTACAAGCTCTAGCCATTT 60.420 50.000 0.00 0.00 43.38 2.32
19 20 1.139058 CCGGTACAAGCTCTAGCCATT 59.861 52.381 0.00 0.00 43.38 3.16
20 21 0.753262 CCGGTACAAGCTCTAGCCAT 59.247 55.000 0.00 0.00 43.38 4.40
21 22 1.956629 GCCGGTACAAGCTCTAGCCA 61.957 60.000 1.90 0.00 43.38 4.75
22 23 1.227292 GCCGGTACAAGCTCTAGCC 60.227 63.158 1.90 0.00 43.38 3.93
23 24 1.589196 CGCCGGTACAAGCTCTAGC 60.589 63.158 1.90 0.00 42.49 3.42
24 25 0.029567 CTCGCCGGTACAAGCTCTAG 59.970 60.000 1.90 0.00 0.00 2.43
25 26 0.679002 ACTCGCCGGTACAAGCTCTA 60.679 55.000 1.90 0.00 0.00 2.43
26 27 1.533469 AACTCGCCGGTACAAGCTCT 61.533 55.000 1.90 0.00 0.00 4.09
27 28 1.080025 AACTCGCCGGTACAAGCTC 60.080 57.895 1.90 0.00 0.00 4.09
28 29 1.374252 CAACTCGCCGGTACAAGCT 60.374 57.895 1.90 0.00 0.00 3.74
29 30 0.388907 TACAACTCGCCGGTACAAGC 60.389 55.000 1.90 0.00 0.00 4.01
30 31 1.723003 GTTACAACTCGCCGGTACAAG 59.277 52.381 1.90 0.00 0.00 3.16
31 32 1.340889 AGTTACAACTCGCCGGTACAA 59.659 47.619 1.90 0.00 32.86 2.41
32 33 0.961019 AGTTACAACTCGCCGGTACA 59.039 50.000 1.90 0.00 32.86 2.90
33 34 1.343506 CAGTTACAACTCGCCGGTAC 58.656 55.000 1.90 0.00 37.08 3.34
34 35 0.244450 CCAGTTACAACTCGCCGGTA 59.756 55.000 1.90 0.00 37.08 4.02
35 36 1.005394 CCAGTTACAACTCGCCGGT 60.005 57.895 1.90 0.00 37.08 5.28
36 37 2.388232 GCCAGTTACAACTCGCCGG 61.388 63.158 0.00 0.00 37.20 6.13
37 38 1.225376 TTGCCAGTTACAACTCGCCG 61.225 55.000 8.86 0.00 41.60 6.46
38 39 0.237498 GTTGCCAGTTACAACTCGCC 59.763 55.000 8.86 0.00 41.60 5.54
39 40 3.748021 GTTGCCAGTTACAACTCGC 57.252 52.632 4.94 4.94 43.23 5.03
43 44 8.512138 AGTAATTATTGAGTTGCCAGTTACAAC 58.488 33.333 0.00 0.00 46.18 3.32
44 45 8.630054 AGTAATTATTGAGTTGCCAGTTACAA 57.370 30.769 0.00 0.00 0.00 2.41
45 46 7.064134 CGAGTAATTATTGAGTTGCCAGTTACA 59.936 37.037 0.00 0.00 0.00 2.41
46 47 7.277098 TCGAGTAATTATTGAGTTGCCAGTTAC 59.723 37.037 0.00 0.00 0.00 2.50
47 48 7.324935 TCGAGTAATTATTGAGTTGCCAGTTA 58.675 34.615 0.00 0.00 0.00 2.24
48 49 6.170506 TCGAGTAATTATTGAGTTGCCAGTT 58.829 36.000 0.00 0.00 0.00 3.16
49 50 5.730550 TCGAGTAATTATTGAGTTGCCAGT 58.269 37.500 0.00 0.00 0.00 4.00
50 51 6.662414 TTCGAGTAATTATTGAGTTGCCAG 57.338 37.500 0.00 0.00 0.00 4.85
51 52 7.471721 CATTTCGAGTAATTATTGAGTTGCCA 58.528 34.615 0.00 0.00 0.00 4.92
52 53 6.414987 GCATTTCGAGTAATTATTGAGTTGCC 59.585 38.462 0.00 0.00 0.00 4.52
53 54 6.414987 GGCATTTCGAGTAATTATTGAGTTGC 59.585 38.462 0.00 1.65 0.00 4.17
54 55 6.912591 GGGCATTTCGAGTAATTATTGAGTTG 59.087 38.462 0.00 0.00 0.00 3.16
55 56 6.601613 TGGGCATTTCGAGTAATTATTGAGTT 59.398 34.615 0.00 0.00 0.00 3.01
56 57 6.119536 TGGGCATTTCGAGTAATTATTGAGT 58.880 36.000 0.00 0.00 0.00 3.41
57 58 6.618287 TGGGCATTTCGAGTAATTATTGAG 57.382 37.500 0.00 0.00 0.00 3.02
58 59 6.601613 AGTTGGGCATTTCGAGTAATTATTGA 59.398 34.615 0.00 0.00 0.00 2.57
59 60 6.692681 CAGTTGGGCATTTCGAGTAATTATTG 59.307 38.462 0.00 0.00 0.00 1.90
60 61 6.183360 CCAGTTGGGCATTTCGAGTAATTATT 60.183 38.462 0.00 0.00 0.00 1.40
61 62 5.299279 CCAGTTGGGCATTTCGAGTAATTAT 59.701 40.000 0.00 0.00 0.00 1.28
62 63 4.638421 CCAGTTGGGCATTTCGAGTAATTA 59.362 41.667 0.00 0.00 0.00 1.40
63 64 3.443681 CCAGTTGGGCATTTCGAGTAATT 59.556 43.478 0.00 0.00 0.00 1.40
64 65 3.016736 CCAGTTGGGCATTTCGAGTAAT 58.983 45.455 0.00 0.00 0.00 1.89
65 66 2.432444 CCAGTTGGGCATTTCGAGTAA 58.568 47.619 0.00 0.00 0.00 2.24
66 67 2.107950 CCAGTTGGGCATTTCGAGTA 57.892 50.000 0.00 0.00 0.00 2.59
67 68 2.946947 CCAGTTGGGCATTTCGAGT 58.053 52.632 0.00 0.00 0.00 4.18
103 104 2.671070 GCTAAATTCCAGGCCGTGTTTG 60.671 50.000 0.00 0.00 0.00 2.93
104 105 1.544246 GCTAAATTCCAGGCCGTGTTT 59.456 47.619 0.00 0.00 0.00 2.83
124 125 3.555547 TGAAAACACACGTCTCTCACATG 59.444 43.478 0.00 0.00 0.00 3.21
126 127 3.239587 TGAAAACACACGTCTCTCACA 57.760 42.857 0.00 0.00 0.00 3.58
207 208 5.463392 CGAATGTTCACTATCGGTTCATGAT 59.537 40.000 0.00 0.00 0.00 2.45
213 214 4.817517 AGTTCGAATGTTCACTATCGGTT 58.182 39.130 0.00 0.00 36.05 4.44
219 220 7.820386 TGGCTAATTTAGTTCGAATGTTCACTA 59.180 33.333 0.00 0.00 0.00 2.74
223 224 8.911247 AAATGGCTAATTTAGTTCGAATGTTC 57.089 30.769 0.00 0.00 36.69 3.18
227 228 8.956426 TGAGAAAATGGCTAATTTAGTTCGAAT 58.044 29.630 0.00 0.00 37.51 3.34
278 422 6.544622 TCGTTAACCACAACAAAGTTACAAG 58.455 36.000 0.00 0.00 0.00 3.16
329 474 4.799564 TTTTTGAAAGTCACACAGGCTT 57.200 36.364 0.00 0.00 46.12 4.35
349 494 4.532834 TCCACACAGGCTTTACTCTTTTT 58.467 39.130 0.00 0.00 37.29 1.94
350 495 4.164843 TCCACACAGGCTTTACTCTTTT 57.835 40.909 0.00 0.00 37.29 2.27
351 496 3.857157 TCCACACAGGCTTTACTCTTT 57.143 42.857 0.00 0.00 37.29 2.52
352 497 3.857157 TTCCACACAGGCTTTACTCTT 57.143 42.857 0.00 0.00 37.29 2.85
353 498 3.496870 CCTTTCCACACAGGCTTTACTCT 60.497 47.826 0.00 0.00 37.29 3.24
354 499 2.814336 CCTTTCCACACAGGCTTTACTC 59.186 50.000 0.00 0.00 37.29 2.59
377 522 0.605319 ATTCTTCCGTTGCTTCCGCA 60.605 50.000 0.00 0.00 46.24 5.69
380 525 2.699954 TGAGATTCTTCCGTTGCTTCC 58.300 47.619 0.00 0.00 0.00 3.46
418 563 5.449107 TGTGTTTGACTGAGGAGTAGTAC 57.551 43.478 0.00 0.00 30.16 2.73
423 568 2.945668 GCTTTGTGTTTGACTGAGGAGT 59.054 45.455 0.00 0.00 33.98 3.85
512 662 2.788191 AAGAAAGGTGAGCGCGAGGG 62.788 60.000 12.10 0.00 0.00 4.30
555 705 3.176708 CCAGCGCTTCTGATTTGATTTG 58.823 45.455 7.50 0.00 45.72 2.32
556 706 2.165030 CCCAGCGCTTCTGATTTGATTT 59.835 45.455 7.50 0.00 45.72 2.17
557 707 1.747355 CCCAGCGCTTCTGATTTGATT 59.253 47.619 7.50 0.00 45.72 2.57
558 708 1.065199 TCCCAGCGCTTCTGATTTGAT 60.065 47.619 7.50 0.00 45.72 2.57
559 709 0.324614 TCCCAGCGCTTCTGATTTGA 59.675 50.000 7.50 0.00 45.72 2.69
567 717 3.130160 CTTGGCTCCCAGCGCTTC 61.130 66.667 7.50 0.00 43.62 3.86
640 790 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
641 791 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
642 792 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
643 793 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
644 794 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
645 795 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
646 796 5.606348 AACTCTCTCTCTCTCTCTCTCTC 57.394 47.826 0.00 0.00 0.00 3.20
647 797 7.682787 ATTAACTCTCTCTCTCTCTCTCTCT 57.317 40.000 0.00 0.00 0.00 3.10
650 800 9.262358 GACTTATTAACTCTCTCTCTCTCTCTC 57.738 40.741 0.00 0.00 0.00 3.20
737 887 1.754226 CGGAAAGAGGAGAGAGAAGGG 59.246 57.143 0.00 0.00 0.00 3.95
738 888 1.136110 GCGGAAAGAGGAGAGAGAAGG 59.864 57.143 0.00 0.00 0.00 3.46
739 889 2.099405 AGCGGAAAGAGGAGAGAGAAG 58.901 52.381 0.00 0.00 0.00 2.85
764 919 4.166011 CGGCGCAAACAGCTAGCC 62.166 66.667 12.13 0.00 43.74 3.93
822 977 1.000771 CTCCTCCCACTCACCGAGA 60.001 63.158 0.00 0.00 33.32 4.04
895 1050 4.382320 GCTTGTACCGCCGGTCCA 62.382 66.667 14.44 4.01 37.09 4.02
1127 1307 2.854214 GCGCGCGAGAGATCAACAG 61.854 63.158 37.18 0.00 0.00 3.16
1337 1517 4.373116 GGGTTGAGGCGTGCGAGA 62.373 66.667 0.00 0.00 0.00 4.04
1388 1568 1.953772 CACGGGGTACTGGCAAAAC 59.046 57.895 0.00 0.00 0.00 2.43
1401 1581 2.203209 GGGCTTAGGATGCACGGG 60.203 66.667 0.00 0.00 0.00 5.28
1417 1598 2.186076 GATACGAGACAAGAAGCACGG 58.814 52.381 0.00 0.00 0.00 4.94
1418 1599 2.186076 GGATACGAGACAAGAAGCACG 58.814 52.381 0.00 0.00 0.00 5.34
1453 1634 4.760047 CCGTTCAGCCCTGTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
1526 1707 2.669569 CAGTGGGCGAGTTGTGGG 60.670 66.667 0.00 0.00 0.00 4.61
1620 1803 6.625960 GCTGGTAAGGAATTGAACCTTGAATC 60.626 42.308 9.13 0.00 45.74 2.52
1741 2109 2.620251 TATTGGTCGCCAGATTCCTG 57.380 50.000 0.00 0.00 40.09 3.86
1759 2127 4.860802 TGGGAGATTGCCAGAGAAATTA 57.139 40.909 0.00 0.00 30.85 1.40
1802 2170 7.903431 CGTATTTTCTTACAGGTACTCAATTGC 59.097 37.037 0.00 0.00 34.60 3.56
1804 2172 9.498176 AACGTATTTTCTTACAGGTACTCAATT 57.502 29.630 0.00 0.00 34.60 2.32
1983 2351 4.380531 TGCCTTACAACTCTGAAAGTGAG 58.619 43.478 0.00 0.00 38.58 3.51
2091 2462 1.735571 CGTTGTGGGAAAAGTATCCGG 59.264 52.381 0.00 0.00 40.62 5.14
2182 2553 5.887598 TGTGAAGCCAGCAAATGAGTTATAT 59.112 36.000 0.00 0.00 0.00 0.86
2351 2747 3.317711 TGTTTGAAGGGTACAAGTGCATG 59.682 43.478 0.00 0.00 0.00 4.06
2553 2949 8.909671 CAAATTGTGCTCTTAAGAAAATCACTC 58.090 33.333 18.94 5.22 0.00 3.51
2682 3078 3.708121 GCTTACAGGGTAGTAAGGCCTAA 59.292 47.826 5.16 0.00 46.94 2.69
2708 3104 7.498570 AGTTAAATTGCTGCCTGAAAATGAAAA 59.501 29.630 0.00 0.00 0.00 2.29
2714 3110 4.037446 ACGAGTTAAATTGCTGCCTGAAAA 59.963 37.500 0.00 0.00 0.00 2.29
2715 3111 3.568007 ACGAGTTAAATTGCTGCCTGAAA 59.432 39.130 0.00 0.00 0.00 2.69
2716 3112 3.146066 ACGAGTTAAATTGCTGCCTGAA 58.854 40.909 0.00 0.00 0.00 3.02
2717 3113 2.742053 GACGAGTTAAATTGCTGCCTGA 59.258 45.455 0.00 0.00 0.00 3.86
2718 3114 2.159517 GGACGAGTTAAATTGCTGCCTG 60.160 50.000 0.00 0.00 0.00 4.85
2719 3115 2.084546 GGACGAGTTAAATTGCTGCCT 58.915 47.619 0.00 0.00 0.00 4.75
2720 3116 2.084546 AGGACGAGTTAAATTGCTGCC 58.915 47.619 0.00 0.00 0.00 4.85
2721 3117 2.484264 ACAGGACGAGTTAAATTGCTGC 59.516 45.455 0.00 0.00 31.04 5.25
2722 3118 4.024048 ACAACAGGACGAGTTAAATTGCTG 60.024 41.667 0.00 0.00 33.91 4.41
2723 3119 4.134563 ACAACAGGACGAGTTAAATTGCT 58.865 39.130 0.00 0.00 0.00 3.91
2724 3120 4.483476 ACAACAGGACGAGTTAAATTGC 57.517 40.909 0.00 0.00 0.00 3.56
2725 3121 5.173131 GCAAACAACAGGACGAGTTAAATTG 59.827 40.000 0.00 0.00 0.00 2.32
2736 3135 6.346838 GCATTTTATCAAGCAAACAACAGGAC 60.347 38.462 0.00 0.00 0.00 3.85
2743 3142 6.991938 AGGTTAGCATTTTATCAAGCAAACA 58.008 32.000 0.00 0.00 0.00 2.83
3071 3471 8.726988 GCAACAAGTTATTAGAATGTTCTACCA 58.273 33.333 2.08 0.00 39.36 3.25
3072 3472 8.726988 TGCAACAAGTTATTAGAATGTTCTACC 58.273 33.333 2.08 0.00 39.36 3.18
3251 3672 0.890683 CCATTCTTGCCACCTTGACC 59.109 55.000 0.00 0.00 0.00 4.02
3391 3812 5.714806 TGGACCTACAAAATCTTTGGATTCC 59.285 40.000 0.00 0.00 40.86 3.01
3458 3879 1.057636 CAGCAGCAAGAAAACATGCG 58.942 50.000 0.00 0.00 46.98 4.73
3551 3974 2.227388 GACCCAATCAAACAGCACTCAG 59.773 50.000 0.00 0.00 0.00 3.35
3677 4100 2.089980 TGACACTTAGGCTCTACGGAC 58.910 52.381 0.00 0.00 0.00 4.79
3721 4144 2.653726 AGTGTGCCATGTGAGTTTTGA 58.346 42.857 0.00 0.00 0.00 2.69
3775 4198 6.436218 TCTTGATGTCAAAGGCTAGTAGTGTA 59.564 38.462 0.00 0.00 35.15 2.90
3779 4202 6.577103 TGATCTTGATGTCAAAGGCTAGTAG 58.423 40.000 0.00 0.00 35.15 2.57
3869 4292 9.283420 CTATTGAGTGCATATTACAGACTATCG 57.717 37.037 0.00 0.00 0.00 2.92
4122 4545 8.365210 GTGTGCAATCAATTCAGTTAAAATACG 58.635 33.333 0.00 0.00 0.00 3.06
4139 4562 1.783284 TGACTGACGAGTGTGCAATC 58.217 50.000 0.00 0.00 30.16 2.67
4334 4757 0.181824 AAGCCACGGTGTAAGGTGTT 59.818 50.000 7.45 0.00 32.30 3.32
4486 4909 3.756963 GACTTGTTATTCCACCAGGGTTC 59.243 47.826 0.00 0.00 38.11 3.62
4527 4954 2.639065 TCAGTCACCCACAAACTTGAC 58.361 47.619 0.00 0.00 38.95 3.18
4535 4962 1.002430 GAGCTGATTCAGTCACCCACA 59.998 52.381 14.90 0.00 33.43 4.17
4543 4970 5.643421 AATGGGAATAGAGCTGATTCAGT 57.357 39.130 14.90 2.39 35.40 3.41
4576 5006 7.144722 TGCATAAAATAGTTTCACACTCCAG 57.855 36.000 0.00 0.00 36.88 3.86
4655 5085 5.777732 TGGGCAGTGTAACCAATTCTTATTT 59.222 36.000 1.56 0.00 37.80 1.40
4959 5389 5.126396 ACTCATAAACAAGAAGCCTTTGC 57.874 39.130 0.00 0.00 37.95 3.68
5167 5597 6.997655 CCTCATGCAGGTATCTATACAAAGA 58.002 40.000 0.00 0.00 37.53 2.52
5399 5829 4.202367 ACCACTTCAGTAGAAACCTGGAAG 60.202 45.833 0.00 0.00 36.03 3.46
5603 6033 2.858745 ACAGCCGTACAAAGGTCATTT 58.141 42.857 0.00 0.00 0.00 2.32
5615 6045 1.890489 TCTAGAACTGCAACAGCCGTA 59.110 47.619 0.00 0.00 34.37 4.02
5686 6116 4.813161 ACCATCTTAGAAAGTGCATCGATG 59.187 41.667 21.27 21.27 0.00 3.84
5725 6155 1.597663 GATTTCGCAGGGTACATTCCG 59.402 52.381 0.00 0.00 0.00 4.30
5805 6235 4.818005 TGCTGCCATACAACTGAATATCTG 59.182 41.667 0.00 0.00 0.00 2.90
5866 6321 8.642432 AGACTTAGATGTGCAATACTTATAGCA 58.358 33.333 0.00 0.00 34.10 3.49
5887 6342 8.642432 TGCAATACTTATAGCACATCTAGACTT 58.358 33.333 0.00 0.00 31.05 3.01
5888 6343 8.183104 TGCAATACTTATAGCACATCTAGACT 57.817 34.615 0.00 0.00 31.05 3.24
5898 6353 7.872993 GGACTTAGATGTGCAATACTTATAGCA 59.127 37.037 0.00 0.00 34.10 3.49
5899 6354 8.091449 AGGACTTAGATGTGCAATACTTATAGC 58.909 37.037 0.00 0.00 0.00 2.97
5902 6357 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
5903 6358 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
5904 6359 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
5905 6360 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
5906 6361 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
5907 6362 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
5908 6363 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
5909 6364 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
5910 6365 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
5911 6366 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
5912 6367 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
5913 6368 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
5919 6374 9.334947 CAACATAAGATCAATGACATAGGACTT 57.665 33.333 13.33 0.00 0.00 3.01
5920 6375 8.708378 TCAACATAAGATCAATGACATAGGACT 58.292 33.333 13.33 0.00 0.00 3.85
5921 6376 8.893219 TCAACATAAGATCAATGACATAGGAC 57.107 34.615 13.33 0.00 0.00 3.85
5922 6377 8.927411 TCTCAACATAAGATCAATGACATAGGA 58.073 33.333 13.33 0.00 0.00 2.94
5923 6378 9.722184 ATCTCAACATAAGATCAATGACATAGG 57.278 33.333 13.33 0.00 0.00 2.57
5926 6381 8.771766 CGAATCTCAACATAAGATCAATGACAT 58.228 33.333 13.33 0.00 32.29 3.06
5927 6382 7.765819 ACGAATCTCAACATAAGATCAATGACA 59.234 33.333 13.33 0.00 32.29 3.58
5928 6383 8.060679 CACGAATCTCAACATAAGATCAATGAC 58.939 37.037 13.33 0.00 32.29 3.06
5929 6384 7.765819 ACACGAATCTCAACATAAGATCAATGA 59.234 33.333 13.33 0.00 32.29 2.57
5930 6385 7.913423 ACACGAATCTCAACATAAGATCAATG 58.087 34.615 0.00 0.75 32.29 2.82
5931 6386 9.254133 CTACACGAATCTCAACATAAGATCAAT 57.746 33.333 0.00 0.00 32.29 2.57
5932 6387 8.466798 TCTACACGAATCTCAACATAAGATCAA 58.533 33.333 0.00 0.00 32.29 2.57
5933 6388 7.996385 TCTACACGAATCTCAACATAAGATCA 58.004 34.615 0.00 0.00 32.29 2.92
5971 6426 9.512588 AATCAAGCATAGAGAGAAAGAGAAAAA 57.487 29.630 0.00 0.00 0.00 1.94
5972 6427 9.160496 GAATCAAGCATAGAGAGAAAGAGAAAA 57.840 33.333 0.00 0.00 0.00 2.29
5973 6428 8.316946 TGAATCAAGCATAGAGAGAAAGAGAAA 58.683 33.333 0.00 0.00 0.00 2.52
5974 6429 7.763528 GTGAATCAAGCATAGAGAGAAAGAGAA 59.236 37.037 0.00 0.00 0.00 2.87
5975 6430 7.123997 AGTGAATCAAGCATAGAGAGAAAGAGA 59.876 37.037 0.00 0.00 0.00 3.10
5976 6431 7.267128 AGTGAATCAAGCATAGAGAGAAAGAG 58.733 38.462 0.00 0.00 0.00 2.85
5977 6432 7.093596 TGAGTGAATCAAGCATAGAGAGAAAGA 60.094 37.037 0.00 0.00 34.02 2.52
5978 6433 7.010367 GTGAGTGAATCAAGCATAGAGAGAAAG 59.990 40.741 0.00 0.00 40.43 2.62
5979 6434 6.815641 GTGAGTGAATCAAGCATAGAGAGAAA 59.184 38.462 0.00 0.00 40.43 2.52
5980 6435 6.154192 AGTGAGTGAATCAAGCATAGAGAGAA 59.846 38.462 0.00 0.00 40.43 2.87
5981 6436 5.655974 AGTGAGTGAATCAAGCATAGAGAGA 59.344 40.000 0.00 0.00 40.43 3.10
5982 6437 5.904941 AGTGAGTGAATCAAGCATAGAGAG 58.095 41.667 0.00 0.00 40.43 3.20
5983 6438 5.929058 AGTGAGTGAATCAAGCATAGAGA 57.071 39.130 0.00 0.00 40.43 3.10
5984 6439 7.487484 TCTAAGTGAGTGAATCAAGCATAGAG 58.513 38.462 0.00 0.00 40.43 2.43
5985 6440 7.410120 TCTAAGTGAGTGAATCAAGCATAGA 57.590 36.000 0.00 0.00 40.43 1.98
5986 6441 7.710044 ACATCTAAGTGAGTGAATCAAGCATAG 59.290 37.037 0.00 0.00 40.43 2.23
5987 6442 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
5988 6443 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
5989 6444 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
5990 6445 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
5991 6446 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
5992 6447 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
5993 6448 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
5994 6449 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
5995 6450 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
5996 6451 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
5997 6452 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
5998 6453 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
5999 6454 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
6000 6455 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
6001 6456 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
6002 6457 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
6003 6458 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
6028 6483 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
6029 6484 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
6030 6485 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
6031 6486 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
6032 6487 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
6033 6488 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
6034 6489 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
6035 6490 0.547712 AGGGTGTGTCTAGGGCACAT 60.548 55.000 18.92 5.97 46.66 3.21
6036 6491 0.766674 AAGGGTGTGTCTAGGGCACA 60.767 55.000 14.22 14.22 43.60 4.57
6037 6492 1.272807 TAAGGGTGTGTCTAGGGCAC 58.727 55.000 10.20 10.20 37.37 5.01
6038 6493 2.263895 ATAAGGGTGTGTCTAGGGCA 57.736 50.000 0.00 0.00 0.00 5.36
6039 6494 3.646736 AAATAAGGGTGTGTCTAGGGC 57.353 47.619 0.00 0.00 0.00 5.19
6040 6495 9.338622 CTTTTATAAATAAGGGTGTGTCTAGGG 57.661 37.037 0.00 0.00 0.00 3.53
6090 6549 6.808212 CCACGTAAGATTGCAAGAATTTGAAT 59.192 34.615 4.94 0.00 43.62 2.57
6095 6554 3.758554 AGCCACGTAAGATTGCAAGAATT 59.241 39.130 4.94 2.03 43.62 2.17
6109 6568 7.875554 TGCAATATTAATCAGATTAGCCACGTA 59.124 33.333 3.05 0.00 0.00 3.57
6152 6611 6.992063 AATCGAAGCAACTCAAACATAGAT 57.008 33.333 0.00 0.00 0.00 1.98
6188 6647 4.096382 CCAGGGTAACTTTATGACACATGC 59.904 45.833 0.00 0.00 0.00 4.06
6199 6658 4.388577 AGAAATGAGCCAGGGTAACTTT 57.611 40.909 0.00 0.00 0.00 2.66
6206 6665 7.830099 ATAAATTCTAAGAAATGAGCCAGGG 57.170 36.000 0.00 0.00 0.00 4.45
6379 6838 0.318762 GCCGCCTTACTATGCTAGCT 59.681 55.000 17.23 4.07 0.00 3.32
6415 6874 2.708861 TGGAGCTCTGTAAGAAAACCCA 59.291 45.455 14.64 0.00 46.34 4.51
6442 6901 0.735471 TGTCTCTCGCATCTCCTTCG 59.265 55.000 0.00 0.00 0.00 3.79
6452 6911 3.186119 CTCAGAAGGAAATGTCTCTCGC 58.814 50.000 0.00 0.00 0.00 5.03
6483 6942 4.202253 ACCTCCTTTTCACTTTTGCCATTC 60.202 41.667 0.00 0.00 0.00 2.67
6514 6973 5.278957 GCAGTCACCCAATTCTTGTATTTGT 60.279 40.000 0.00 0.00 0.00 2.83
6540 6999 6.372381 TGAACAACTCATGTATCCAGTTCATG 59.628 38.462 13.12 0.00 42.99 3.07
6562 7021 3.194861 CTCAACCGTCTGAACAACTGAA 58.805 45.455 0.00 0.00 0.00 3.02
6563 7022 2.483013 CCTCAACCGTCTGAACAACTGA 60.483 50.000 0.00 0.00 0.00 3.41
6564 7023 1.867233 CCTCAACCGTCTGAACAACTG 59.133 52.381 0.00 0.00 0.00 3.16
6565 7024 1.760613 TCCTCAACCGTCTGAACAACT 59.239 47.619 0.00 0.00 0.00 3.16
6566 7025 2.234300 TCCTCAACCGTCTGAACAAC 57.766 50.000 0.00 0.00 0.00 3.32
6567 7026 2.367241 TGATCCTCAACCGTCTGAACAA 59.633 45.455 0.00 0.00 0.00 2.83
6568 7027 1.967779 TGATCCTCAACCGTCTGAACA 59.032 47.619 0.00 0.00 0.00 3.18
6569 7028 2.743636 TGATCCTCAACCGTCTGAAC 57.256 50.000 0.00 0.00 0.00 3.18
6650 7109 4.263018 AGTAGACTACCCCGAACAAAAC 57.737 45.455 9.06 0.00 0.00 2.43
6703 7162 1.917955 CCGACTAACATGCTGTACACG 59.082 52.381 0.00 0.00 0.00 4.49
6760 7219 5.749596 TGTACTTGTTTGACATCCAACAG 57.250 39.130 0.00 0.00 33.85 3.16
6791 7250 0.179129 GATGGAACGCAATGCCAAGG 60.179 55.000 0.00 0.00 34.95 3.61
6799 7258 3.270027 CATGAAGTAGGATGGAACGCAA 58.730 45.455 0.00 0.00 0.00 4.85
6927 7392 6.004574 AGTTCATATACTGAGGTATCGCTCA 58.995 40.000 0.00 0.00 39.19 4.26
6970 7435 1.071019 CAATTCTTGCTGCTGCTGCG 61.071 55.000 23.38 12.38 43.34 5.18
6971 7436 0.038526 ACAATTCTTGCTGCTGCTGC 60.039 50.000 22.51 22.51 40.48 5.25
6972 7437 3.777465 ATACAATTCTTGCTGCTGCTG 57.223 42.857 17.00 7.82 40.48 4.41
6973 7438 3.508793 ACAATACAATTCTTGCTGCTGCT 59.491 39.130 17.00 0.00 40.48 4.24
6986 7451 7.126421 ACCTCCAGAGAGATGTAACAATACAAT 59.874 37.037 0.00 0.00 43.39 2.71
6987 7452 6.440647 ACCTCCAGAGAGATGTAACAATACAA 59.559 38.462 0.00 0.00 43.39 2.41
6988 7453 5.958380 ACCTCCAGAGAGATGTAACAATACA 59.042 40.000 0.00 0.00 43.39 2.29
6989 7454 6.461788 GGACCTCCAGAGAGATGTAACAATAC 60.462 46.154 0.00 0.00 43.39 1.89
6990 7455 5.598830 GGACCTCCAGAGAGATGTAACAATA 59.401 44.000 0.00 0.00 43.39 1.90
7051 7516 6.447162 TGTACGTATCTATGATGGCAAAGAG 58.553 40.000 0.00 0.00 0.00 2.85
7053 7518 7.658179 AATGTACGTATCTATGATGGCAAAG 57.342 36.000 0.00 0.00 0.00 2.77
7054 7519 7.713073 TCAAATGTACGTATCTATGATGGCAAA 59.287 33.333 0.00 0.00 0.00 3.68
7055 7520 7.213678 TCAAATGTACGTATCTATGATGGCAA 58.786 34.615 0.00 0.00 0.00 4.52
7056 7521 6.754193 TCAAATGTACGTATCTATGATGGCA 58.246 36.000 0.00 0.00 0.00 4.92
7057 7522 7.090808 TCTCAAATGTACGTATCTATGATGGC 58.909 38.462 0.00 0.00 0.00 4.40
7058 7523 9.476202 TTTCTCAAATGTACGTATCTATGATGG 57.524 33.333 0.00 0.00 0.00 3.51
7061 7526 9.031360 GCTTTTCTCAAATGTACGTATCTATGA 57.969 33.333 0.00 1.49 0.00 2.15
7062 7527 9.035607 AGCTTTTCTCAAATGTACGTATCTATG 57.964 33.333 0.00 0.00 0.00 2.23
7065 7530 9.035607 CATAGCTTTTCTCAAATGTACGTATCT 57.964 33.333 0.00 0.00 0.00 1.98
7066 7531 7.794349 GCATAGCTTTTCTCAAATGTACGTATC 59.206 37.037 0.00 0.00 0.00 2.24
7070 7535 5.163764 TGGCATAGCTTTTCTCAAATGTACG 60.164 40.000 0.00 0.00 0.00 3.67
7071 7536 6.194796 TGGCATAGCTTTTCTCAAATGTAC 57.805 37.500 0.00 0.00 0.00 2.90
7109 7575 7.012421 TGCATTTCTCATCTCAAGATCTTCATG 59.988 37.037 4.57 8.40 31.21 3.07
7238 7704 1.154413 GCACGCTTCCAACACATCG 60.154 57.895 0.00 0.00 0.00 3.84
7241 7707 3.947841 GCGCACGCTTCCAACACA 61.948 61.111 7.96 0.00 38.26 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.